let pytest find all pSTIR tests

Had to rename 2 functions from test_* to *_tests to avoid
pytest flagging up an error

src/common/Utilities.py

@@ -588,7 +588,7 @@ def is_operator_adjoint(operator, num_tests=5, max_err=10e-5, verbose=True):
  return True
 
 
-def test_data_container_algebra(test, x, eps=1e-5):
+def data_container_algebra_tests(test, x, eps=1e-5):
 
  ax = x.as_array()
  ay = numpy.ones_like(ax)

src/xSTIR/pSTIR/tests/CMakeLists.txt

@@ -19,7 +19,7 @@
 #=========================================================================
 
 add_test(NAME PET_TESTS_PYTHON
- COMMAND ${Python_EXECUTABLE} -m pytest --cov=sirf.STIR --cov-config=.coveragerc-STIR src/xSTIR/pSTIR
+ COMMAND ${Python_EXECUTABLE} -m pytest --cov=sirf.STIR --cov-config=.coveragerc-STIR src/xSTIR/pSTIR/tests
  WORKING_DIRECTORY ${CMAKE_SOURCE_DIR})
 #add_test(NAME PET_DEMOS_PYTHON
 # COMMAND ${PYTHON_EXECUTABLE} run_all.py --non-interactive

src/xSTIR/pSTIR/tests/tests_data_container_algebra.py

@@ -15,7 +15,7 @@
 """
 from sirf.STIR import *
 from sirf.Utilities import runner, RE_PYEXT, __license__
-from sirf.Utilities import test_data_container_algebra
+from sirf.Utilities import data_container_algebra_tests
 
 __version__ = "0.2.3"
 __author__ = "Evgueni Ovtchinnikov"
@@ -33,14 +33,14 @@ def test_main(rec=False, verb=False, throw=True):
  AcquisitionData.set_storage_scheme(scheme)
  raw_data_file = existing_filepath(data_path, 'Utahscat600k_ca_seg4.hs')
  ad = AcquisitionData(raw_data_file)
- test_data_container_algebra(test, ad)
+ data_container_algebra_tests(test, ad)
 
  image_size = (31, 111, 111)
  voxel_size = (3.375, 3, 3)
  image = ImageData()
  image.initialise(image_size, voxel_size)
  image.fill(1.0)
- test_data_container_algebra(test, image)
+ data_container_algebra_tests(test, image)
 
  return test.failed, test.ntest
 

src/xSTIR/pSTIR/tests/tests_qp_lc_rdp.py

@@ -20,7 +20,7 @@
 __author__ = "Imraj Singh, Evgueni Ovtchinnikov, Kris Thielemans"
 
 
-def test_Hessian(test, prior, x, eps=1e-3):
+def Hessian_test(test, prior, x, eps=1e-3):
  """Checks that grad(x + dx) - grad(x) is close to H(x)*dx
  """
  if x.norm() > 0:
@@ -84,7 +84,7 @@ def test_main(rec=False, verb=False, throw=True):
 
  if isinstance(prior, sirf.STIR.RelativeDifferencePrior):
  prior.set_epsilon(im.max()*.01)
- test_Hessian(test, prior, im, 0.03)
+ Hessian_test(test, prior, im, 0.03)
 
  return test.failed, test.ntest