diff --git a/modules/skyline.nf b/modules/skyline.nf index 318acb5..1bc5c8c 100644 --- a/modules/skyline.nf +++ b/modules/skyline.nf @@ -19,13 +19,13 @@ process SKYLINE_ADD_LIB { wine SkylineCmd \ --in="${skyline_template_zipfile.baseName}" \ - --log-file=skyline_add_library.log \ --import-fasta="${fasta}" \ --add-library-path="${blib}" \ --out="results.sky" \ --save \ --share-zip="results.sky.zip" \ - --share-type="complete" + --share-type="complete" \ + 2>&1 | tee skyline_add_library.log \ """ stub: