diff --git a/recipes/busco/0001-Set-conda-distribution.patch b/recipes/busco/0001-Set-conda-distribution.patch new file mode 100644 index 0000000000000..b8a0ac5f2531e --- /dev/null +++ b/recipes/busco/0001-Set-conda-distribution.patch @@ -0,0 +1,23 @@ +--- a/src/busco/run_BUSCO.py ++++ b/src/busco/run_BUSCO.py +@@ -121,18 +121,12 @@ class BuscoMaster: + logger.debug("File upload failed. Status code: {}".format(response.status)) + + def get_dist_info(self): +- if ( # todo: fix +- "conda" in __file__ +- and os.environ("CONDA_DEFAULT_ENV") +- and os.environ("CONDA_PREFIX") +- ): +- self.run_data["distribution"] = "conda" +- elif os.path.exists("/.dockerenv"): ++ if os.path.exists("/.dockerenv"): + self.run_data["distribution"] = "docker" + elif os.path.exists("/.singularity.d"): + self.run_data["distribution"] = "singularity" + else: +- self.run_data["distribution"] = "manual" ++ self.run_data["distribution"] = "conda" + + def get_download_url(self): + if self.config.getboolean("busco_run", "offline"): diff --git a/recipes/busco/meta.yaml b/recipes/busco/meta.yaml index 515c990c241e1..a6261567bb48f 100644 --- a/recipes/busco/meta.yaml +++ b/recipes/busco/meta.yaml @@ -1,6 +1,6 @@ {% set name = "busco" %} -{% set version = "5.6.1" %} -{% set sha256 = "1129d8dd1779455b77c47a926650e1974aaca58eeb9e6b3b6e4a706154ab2da8" %} +{% set version = "5.7.0" %} +{% set sha256 = "dbd9e07a5fb42583bd6ddbbfe06c420d5317a6f3698e6f4be0f53baa6c3ccc5e" %} package: name: busco @@ -26,7 +26,7 @@ requirements: - blast >=2.10.1 # There is a multithreading problem for all BLAST versions between 2.4 and 2.10.0 - hmmer >=3.1b2 # sepp needs this version - augustus >=3.3 - - biopython + - biopython >=1.79 - prodigal - sepp >=4.3.10 - dendropy <4.6.0 # necessary temporarily until SEPP updates their codebase or recipe @@ -41,7 +41,7 @@ requirements: - blast >=2.10.1 # There is a multithreading problem for all BLAST versions between 2.4 and 2.10.0 - hmmer >=3.1b2 # sepp needs this version - augustus >=3.3 - - biopython + - biopython >=1.79 - r-base - r-ggplot2 >=2.2.1 - prodigal