total 1.2G -rw-rw-r-- 1 0 Mar 10 13:56 all.out.1b.result -rw-rw-r-- 1 3.0M Mar 10 13:56 all.out.1b.sam -rw-rw-r-- 1 0 Mar 10 13:42 all.out.1.result -rw-rw-r-- 1 3.7M Mar 10 13:42 all.out.1.sam -rw-rw-r-- 1 0 Mar 10 13:56 all.out.b.result -rw-rw-r-- 1 13M Mar 10 13:56 all.out.JS2b.sam -rw-rw-r-- 1 14M Mar 10 13:42 all.out.JS2.sam -rw-rw-r-- 1 1.3M Mar 10 13:39 all.out.JS.Parsered.sam -rw-rw-r-- 1 13M Mar 10 13:39 all.out.JS.sam -rw-rw-r-- 1 0 Mar 10 13:42 all.out.result -rw-rw-r-- 1 5.0K Mar 10 13:56 all.out.um3.colinear.psl -rw-rw-r-- 1 1.4M Mar 10 13:42 all.out.um3.fa -rw-rw-r-- 1 115K Mar 10 13:56 ncls.log -rw-rw-r-- 1 1.4K Mar 10 13:56 ncls.out -rw-rw-r-- 1 33K Mar 10 13:42 out.2b.info -rw-rw-r-- 1 88K Mar 10 13:42 out.2.chi.bed -rw-rw-r-- 1 11K Mar 10 13:40 out.2.info -rw-rw-r-- 1 158K Mar 10 13:40 out.2.info.fa -rw-rw-r-- 1 222K Mar 10 13:42 out.2.info.GRCh37.psl -rw-rw-r-- 1 0 Mar 10 13:56 out.3b.info -rw-rw-r-- 1 0 Mar 10 13:42 out.3.info -rw-rw-r-- 1 0 Mar 10 13:56 out.4b.info -rw-rw-r-- 1 0 Mar 10 13:42 out.4.info -rw-rw-r-- 1 1.9M Mar 10 13:38 out.chi0.bed -rw-rw-r-- 1 91K Mar 10 13:42 out.chi2.bed -rw-rw-r-- 1 88K Mar 10 13:42 out.chi3.bed -rw-rw-r-- 1 1.9M Mar 10 13:39 out.chi.bed -rw-rw-r-- 1 427 Mar 10 13:39 out.chrM.2.psl -rw-rw-r-- 1 427 Mar 10 13:56 out.chrM.um3.psl -rw-rw-r-- 1 20M Mar 10 13:39 out.coding.2.psl -rw-rw-r-- 1 7.5M Mar 10 13:56 out.coding.um3.psl -rw-rw-r-- 1 5.1K Mar 10 13:39 out.colinear.psl -rw-rw-r-- 1 35K Mar 10 13:39 out.info -rw-rw-r-- 1 32K Mar 10 13:42 out.JS1.Idx -rw-rw-r-- 1 33K Mar 10 13:42 out.JS1.preIdx -rw-rw-r-- 1 2.8M Mar 10 13:42 out.JS2.cleaned.info -rw-rw-r-- 1 6.2M Mar 10 13:42 out.JS2.fa -rw-rw-r-- 1 274K Mar 10 13:42 out.JS2.Idx -rw-rw-r-- 1 2.8M Mar 10 13:42 out.JS2.info -rw-rw-r-- 1 304K Mar 10 13:42 out.JS2.info_1 -rw-rw-r-- 1 326K Mar 10 13:42 out.JS2.info_2 -rw-r--r-- 1 31M Mar 10 13:42 out.JS2.ndx -rw-rw-r-- 1 13M Mar 10 13:42 out.JS2.prefa -rw-rw-r-- 1 568K Mar 10 13:42 out.JS2.preIdx -rw-rw-r-- 1 1.3M Mar 10 13:42 out.JS2.result.info -rw-rw-r-- 1 13M Mar 10 13:42 out.JS2.seq -rw-rw-r-- 1 1.3M Mar 10 13:42 out.JS2.seq_1 -rw-rw-r-- 1 1.5M Mar 10 13:42 out.JS2.seq_2 -rw-rw-r-- 1 873K Mar 10 13:39 out.JS.cleaned.info -rw-rw-r-- 1 166K Mar 10 13:39 out.JS.clear.fa -rw-rw-r-- 1 2.0M Mar 10 13:39 out.JS.fa -rw-rw-r-- 1 1.3K Mar 10 13:40 out.JS.GRCh37.2.psl -rw-rw-r-- 1 185K Mar 10 13:40 out.JS.GRCh37.psl -rw-rw-r-- 1 1.7M Mar 10 13:39 out.JS.info -rw-rw-r-- 1 711K Mar 10 13:39 out.JS.info_1 -rw-rw-r-- 1 685K Mar 10 13:39 out.JS.info_2 -rw-r--r-- 1 9.1M Mar 10 13:39 out.JS.ndx -rw-rw-r-- 1 2.0M Mar 10 13:39 out.JS.seq -rw-rw-r-- 1 1.4M Mar 10 13:39 out.JS.seq_1 -rw-rw-r-- 1 4.0M Mar 10 13:39 out.JS.seq12 -rw-rw-r-- 1 1.5M Mar 10 13:39 out.JS.seq_2 -rw-rw-r-- 1 149 Mar 10 13:40 out.linearJS -rw-rw-r-- 1 1.3M Mar 10 13:39 out.lncRNA.2.psl -rw-rw-r-- 1 184K Mar 10 13:56 out.lncRNA.um3.psl -rw-rw-r-- 1 6.3M Mar 10 13:39 out.main_1.JS.sam -rw-rw-r-- 1 1.4M Mar 10 13:42 out.main_1.um3.fastq -rw-rw-r-- 1 6.2M Mar 10 13:39 out.main_2.JS.sam -rw-rw-r-- 1 1.4M Mar 10 13:42 out.main_2.um3.fastq -rw-rw-r-- 1 822M Mar 10 13:35 out.main.bwa.bam -rw-rw-r-- 1 5.4M Mar 10 13:35 out.main.bwa.unmapped_1.fastq -rw-rw-r-- 1 5.4M Mar 10 13:35 out.main.bwa.unmapped_2.fastq -rw-rw-r-- 1 20M Mar 10 13:35 out.main.bwa.unmapped.sam -rw-rw-r-- 1 409K Mar 10 13:35 out.main.bwa.unmapped.sam.id -rw-rw-r-- 1 13M Mar 10 13:56 out.main.JS2b.sam -rw-rw-r-- 1 14M Mar 10 13:42 out.main.JS2.sam -rw-rw-r-- 1 23M Mar 10 13:36 out.main.sam -rw-rw-r-- 1 1.4M Mar 10 13:42 out.main.um3.fa -rw-rw-r-- 1 4.6M Mar 10 13:36 out.main.unmapped_1.fastq -rw-rw-r-- 1 4.6M Mar 10 13:36 out.main.unmapped_2.fastq -rw-rw-r-- 1 4.5M Mar 10 13:36 out.main.unmapped.fa -rw-rw-r-- 1 7.4M Mar 10 13:36 out.main.unmapped.sam -rw-rw-r-- 1 307K Mar 10 13:36 out.main.unmapped.sam.id -rw-rw-r-- 1 3.7M Mar 10 13:42 out.ncl.sam -rw-rw-r-- 1 1.1M Mar 10 13:42 out.PreJS2.bed -rw-rw-r-- 1 992K Mar 10 13:42 out.PreJS2.info -rw-rw-r-- 1 609K Mar 10 13:42 out.PreJS2.info2 -rw-rw-r-- 1 3.1M Mar 10 13:42 out.PreJS2.seq -rw-rw-r-- 1 2.7M Mar 10 13:42 out.PreJS2.seq2 -rw-rw-r-- 1 1.7M Mar 10 13:39 out.preJS.bed -rw-rw-r-- 1 1.6M Mar 10 13:39 out.preJS.info -rw-rw-r-- 1 1.3M Mar 10 13:39 out.preJS.info2 -rw-rw-r-- 1 3.1M Mar 10 13:39 out.preJS.seq -rw-rw-r-- 1 2.9M Mar 10 13:39 out.preJS.seq2 -rw-rw-r-- 1 0 Mar 10 13:42 out.preResult -rw-rw-r-- 1 0 Mar 10 19:13 output.list -rw-rw-r-- 1 0 Mar 10 13:56 out.result -rw-rw-r-- 1 34K Mar 10 13:42 out.result.info -rw-rw-r-- 1 3.0M Mar 10 13:56 out.result.sam -rw-rw-r-- 1 0 Mar 10 13:56 out.result.tmp -rw-rw-r-- 1 0 Mar 10 13:56 out.result.tmp2 -rw-rw-r-- 1 0 Mar 10 13:56 out.result.tmp3 -rw-rw-r-- 1 5.7M Mar 10 13:38 out.rG.non_un.psl -rw-rw-r-- 1 5.7M Mar 10 13:38 out.rG.psl -rw-rw-r-- 1 2.2M Mar 10 13:55 out.rG.um3.psl -rw-rw-r-- 1 11K Mar 10 13:40 out.tmp2.info -rw-rw-r-- 1 33K Mar 10 13:40 out.tmp.info -rw-rw-r-- 1 3.4M Mar 10 13:38 out.unmapped.2.fa -rw-rw-r-- 1 4.5M Mar 10 13:36 out.unmapped.fa -rw-rw-r-- 1 0 Mar 10 13:38 out.un.psl -rw-rw-r-- 1 64K Mar 10 13:42 temp.list -rw-rw-r-- 1 87K Mar 10 13:39 tmp.info