From 3aaaae1b5de6cb7f97468531514954c156a5a605 Mon Sep 17 00:00:00 2001 From: yebai Date: Sat, 1 Jul 2023 01:28:30 +0000 Subject: [PATCH] Update manifest files --- tutorials/00-introduction/Manifest.toml | 135 ++++++++-------- .../01-gaussian-mixture-model/Manifest.toml | 126 ++++++++------- .../02-logistic-regression/Manifest.toml | 100 ++++++------ .../03-bayesian-neural-network/Manifest.toml | 116 ++++++------- .../04-hidden-markov-model/Manifest.toml | 108 +++++++------ tutorials/05-linear-regression/Manifest.toml | 120 +++++++------- .../06-infinite-mixture-model/Manifest.toml | 104 ++++++------ tutorials/07-poisson-regression/Manifest.toml | 100 ++++++------ .../Manifest.toml | 120 +++++++------- .../09-variational-inference/Manifest.toml | 126 ++++++++------- .../Manifest.toml | 152 +++++++++--------- tutorials/11-probabilistic-pca/Manifest.toml | 112 +++++++------ tutorials/12-gaussian-process/Manifest.toml | 108 +++++++------ .../13-seasonal-time-series/Manifest.toml | 120 +++++++------- tutorials/14-minituring/Manifest.toml | 56 +++---- .../docs-00-getting-started/Manifest.toml | 108 +++++++------ 16 files changed, 951 insertions(+), 860 deletions(-) diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml index 873eef2d8..0c0d9742c 100644 --- a/tutorials/00-introduction/Manifest.toml +++ b/tutorials/00-introduction/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -162,9 +162,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -180,9 +180,9 @@ version = "0.1.7" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "7ebbd653f74504447f1c33b91cd706a69a1b189f" +git-tree-sha1 = "42fe66dbc8f1d09a44aa87f18d26926d06a35f84" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.4" +version = "0.15.3" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -232,9 +232,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -280,21 +280,15 @@ version = "1.15.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" version = "1.0.0" -[[DataValues]] -deps = ["DataValueInterfaces", "Dates"] -git-tree-sha1 = "d88a19299eba280a6d062e135a43f00323ae70bf" -uuid = "e7dc6d0d-1eca-5fa6-8ad6-5aecde8b7ea5" -version = "0.4.13" - [[Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" @@ -338,9 +332,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -381,11 +375,17 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExprTools]] git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" @@ -406,9 +406,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -527,10 +527,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -635,9 +635,9 @@ version = "2.1.91+0" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -819,9 +819,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] @@ -878,10 +878,10 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "6d019f5a0465522bbfdd68ecfad7f86b535d6935" +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.9.0" +version = "0.10.2" [[NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] @@ -890,9 +890,10 @@ uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" version = "0.8.21" [[NaNMath]] -git-tree-sha1 = "b086b7ea07f8e38cf122f5016af580881ac914fe" +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "0.3.7" +version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] @@ -957,6 +958,12 @@ git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" +[[Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.2.15" + [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" @@ -980,9 +987,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1218,9 +1225,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1268,10 +1275,10 @@ uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "1.3.0" [[StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "2b35ba790f1f823872dcf378a6d3c3b520092eac" +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "14ef622cf28b05e38f8af1de57bc9142b03fbfe3" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.1" +version = "0.15.5" [[StringManipulation]] git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" @@ -1331,10 +1338,10 @@ deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "0874c1b5de1b5529b776cfeca3ec0acfada97b1b" +deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "8b552cc0a4132c1ce5cee14197bb57d2109d480f" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.20" +version = "0.2.25" [[TranscodingStreams]] deps = ["Random", "Test"] @@ -1344,9 +1351,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1448,10 +1455,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1460,10 +1467,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1502,16 +1509,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1562,10 +1569,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"] diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml index d5b0eee35..6955da703 100644 --- a/tutorials/01-gaussian-mixture-model/Manifest.toml +++ b/tutorials/01-gaussian-mixture-model/Manifest.toml @@ -1,15 +1,15 @@ # This file is machine-generated - editing it directly is not advised [[ADTypes]] -git-tree-sha1 = "dcfdf328328f2645531c4ddebf841228aef74130" +git-tree-sha1 = "e58c18d2312749847a74f5be80bb0fa53da102bd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.3" +version = "0.1.5" [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -80,9 +80,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -155,9 +155,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -173,9 +173,9 @@ version = "0.1.7" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "a6e6ce44a1e0a781772fc795fb7343b1925e9898" +git-tree-sha1 = "42fe66dbc8f1d09a44aa87f18d26926d06a35f84" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.2" +version = "0.15.3" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -225,9 +225,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -273,9 +273,9 @@ version = "1.15.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -314,10 +314,10 @@ uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" [[Distances]] -deps = ["LinearAlgebra", "Statistics"] -git-tree-sha1 = "a5b88815e6984e9f3256b6ca0dc63109b16a506f" +deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.9.2" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -325,9 +325,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -368,11 +368,17 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExprTools]] git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" @@ -393,9 +399,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -405,9 +411,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "e17cc4dc2d0b0b568e80d937de8ed8341822de67" +git-tree-sha1 = "0b3b52afd0f87b0a3f5ada0466352d125c9db458" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.2.0" +version = "1.2.1" [[FixedPointNumbers]] deps = ["Statistics"] @@ -514,10 +520,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -622,9 +628,9 @@ version = "2.1.91+0" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -646,9 +652,9 @@ version = "3.0.0+1" [[LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "5007c1421563108110bbd57f63d8ad4565808818" +git-tree-sha1 = "7d5788011dd273788146d40eb5b1fbdc199d0296" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "5.2.0" +version = "6.0.1" [[LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -812,9 +818,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] @@ -980,9 +986,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1158,9 +1164,9 @@ version = "1.93.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "660322732becf934bf818792f9740984b375d300" +git-tree-sha1 = "668ed6b2265d1adb36b7239501e9369025bd6c78" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.1" +version = "0.3.2" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1218,9 +1224,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1350,9 +1356,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Tricks]] git-tree-sha1 = "aadb748be58b492045b4f56166b5188aa63ce549" @@ -1413,9 +1419,9 @@ version = "0.2.1" [[UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "ea37e6066bf194ab78f4e747f5245261f17a7175" +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.2" +version = "0.1.3" [[Unzip]] git-tree-sha1 = "34db80951901073501137bdbc3d5a8e7bbd06670" @@ -1465,10 +1471,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1477,10 +1483,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1519,16 +1525,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1579,10 +1585,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"] diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml index d1c143ec9..dc8f0ee6a 100644 --- a/tutorials/02-logistic-regression/Manifest.toml +++ b/tutorials/02-logistic-regression/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -174,9 +174,9 @@ version = "0.10.8" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -192,9 +192,9 @@ version = "0.1.7" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "a6e6ce44a1e0a781772fc795fb7343b1925e9898" +git-tree-sha1 = "42fe66dbc8f1d09a44aa87f18d26926d06a35f84" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.2" +version = "0.15.3" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -244,9 +244,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -298,9 +298,9 @@ version = "1.5.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -350,9 +350,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -393,11 +393,17 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExprTools]] git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" @@ -418,9 +424,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -557,10 +563,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -671,9 +677,9 @@ version = "2.1.91+0" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -861,9 +867,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLDataPattern]] deps = ["LearnBase", "MLLabelUtils", "Random", "SparseArrays", "StatsBase"] @@ -1053,9 +1059,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1314,9 +1320,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1452,9 +1458,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1567,10 +1573,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1579,10 +1585,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1621,16 +1627,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1681,10 +1687,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"] diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml index 303dc0b6e..ff32b74da 100644 --- a/tutorials/03-bayesian-neural-network/Manifest.toml +++ b/tutorials/03-bayesian-neural-network/Manifest.toml @@ -1,15 +1,15 @@ # This file is machine-generated - editing it directly is not advised [[ADTypes]] -git-tree-sha1 = "dcfdf328328f2645531c4ddebf841228aef74130" +git-tree-sha1 = "e58c18d2312749847a74f5be80bb0fa53da102bd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.3" +version = "0.1.5" [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -68,9 +68,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -179,9 +179,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -243,9 +243,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -297,9 +297,9 @@ version = "1.15.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -343,9 +343,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -386,11 +386,17 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExprTools]] git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" @@ -411,9 +417,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -435,9 +441,9 @@ version = "0.1.1" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "e17cc4dc2d0b0b568e80d937de8ed8341822de67" +git-tree-sha1 = "0b3b52afd0f87b0a3f5ada0466352d125c9db458" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.2.0" +version = "1.2.1" [[FixedPointNumbers]] deps = ["Statistics"] @@ -447,9 +453,9 @@ version = "0.8.4" [[Flux]] deps = ["Adapt", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote", "cuDNN"] -git-tree-sha1 = "64005071944bae14fc145661f617eb68b339189c" +git-tree-sha1 = "3e2c3704c2173ab4b1935362384ca878b53d4c34" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.13.16" +version = "0.13.17" [[Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] @@ -510,9 +516,9 @@ version = "3.3.8+0" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "a3351bc577a6b49297248aadc23a4add1097c2ac" +git-tree-sha1 = "2e57b4a4f9cc15e85a24d603256fe08e527f48d1" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.7.1" +version = "8.8.1" [[GPUArraysCore]] deps = ["Adapt"] @@ -562,10 +568,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -676,9 +682,9 @@ version = "0.2.4" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -866,9 +872,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] @@ -1042,9 +1048,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1243,9 +1249,9 @@ version = "1.93.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "660322732becf934bf818792f9740984b375d300" +git-tree-sha1 = "668ed6b2265d1adb36b7239501e9369025bd6c78" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.1" +version = "0.3.2" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1308,9 +1314,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1434,9 +1440,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Tricks]] git-tree-sha1 = "aadb748be58b492045b4f56166b5188aa63ce549" @@ -1543,10 +1549,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1555,10 +1561,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1597,16 +1603,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1657,10 +1663,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"] diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml index ae727e5c1..430b7a0cd 100644 --- a/tutorials/04-hidden-markov-model/Manifest.toml +++ b/tutorials/04-hidden-markov-model/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -162,9 +162,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -180,9 +180,9 @@ version = "0.1.7" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "a6e6ce44a1e0a781772fc795fb7343b1925e9898" +git-tree-sha1 = "42fe66dbc8f1d09a44aa87f18d26926d06a35f84" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.2" +version = "0.15.3" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -232,9 +232,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -280,9 +280,9 @@ version = "1.15.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -332,9 +332,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -375,11 +375,17 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExprTools]] git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" @@ -400,9 +406,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -521,10 +527,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -629,9 +635,9 @@ version = "2.1.91+0" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -653,9 +659,9 @@ version = "3.0.0+1" [[LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "5007c1421563108110bbd57f63d8ad4565808818" +git-tree-sha1 = "7d5788011dd273788146d40eb5b1fbdc199d0296" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "5.2.0" +version = "6.0.1" [[LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -813,9 +819,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] @@ -981,9 +987,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1219,9 +1225,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1345,9 +1351,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1397,9 +1403,9 @@ version = "0.2.1" [[UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "ea37e6066bf194ab78f4e747f5245261f17a7175" +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.2" +version = "0.1.3" [[Unzip]] git-tree-sha1 = "34db80951901073501137bdbc3d5a8e7bbd06670" @@ -1449,10 +1455,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1461,10 +1467,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1503,16 +1509,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1563,10 +1569,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"] diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml index c2d7c3096..6bd80478a 100644 --- a/tutorials/05-linear-regression/Manifest.toml +++ b/tutorials/05-linear-regression/Manifest.toml @@ -1,15 +1,15 @@ # This file is machine-generated - editing it directly is not advised [[ADTypes]] -git-tree-sha1 = "dcfdf328328f2645531c4ddebf841228aef74130" +git-tree-sha1 = "e58c18d2312749847a74f5be80bb0fa53da102bd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.3" +version = "0.1.5" [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -80,9 +80,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -167,9 +167,9 @@ version = "0.10.8" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -185,9 +185,9 @@ version = "0.1.7" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "a6e6ce44a1e0a781772fc795fb7343b1925e9898" +git-tree-sha1 = "42fe66dbc8f1d09a44aa87f18d26926d06a35f84" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.2" +version = "0.15.3" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -237,9 +237,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -297,9 +297,9 @@ version = "1.5.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -349,9 +349,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -392,11 +392,17 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExprTools]] git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" @@ -417,9 +423,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -453,9 +459,9 @@ version = "0.9.20" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "e17cc4dc2d0b0b568e80d937de8ed8341822de67" +git-tree-sha1 = "0b3b52afd0f87b0a3f5ada0466352d125c9db458" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.2.0" +version = "1.2.1" [[FixedPointNumbers]] deps = ["Statistics"] @@ -568,10 +574,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -688,9 +694,9 @@ version = "0.2.4" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -712,9 +718,9 @@ version = "3.0.0+1" [[LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "5007c1421563108110bbd57f63d8ad4565808818" +git-tree-sha1 = "7d5788011dd273788146d40eb5b1fbdc199d0296" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "5.2.0" +version = "6.0.1" [[LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -878,9 +884,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] @@ -1069,9 +1075,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1270,9 +1276,9 @@ version = "1.93.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "660322732becf934bf818792f9740984b375d300" +git-tree-sha1 = "668ed6b2265d1adb36b7239501e9369025bd6c78" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.1" +version = "0.3.2" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1352,9 +1358,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1496,9 +1502,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Tricks]] git-tree-sha1 = "aadb748be58b492045b4f56166b5188aa63ce549" @@ -1559,9 +1565,9 @@ version = "0.2.1" [[UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "ea37e6066bf194ab78f4e747f5245261f17a7175" +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.2" +version = "0.1.3" [[Unzip]] git-tree-sha1 = "34db80951901073501137bdbc3d5a8e7bbd06670" @@ -1622,10 +1628,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1634,10 +1640,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1676,16 +1682,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1736,10 +1742,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"] diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml index 65cfad796..01a7bcc9a 100644 --- a/tutorials/06-infinite-mixture-model/Manifest.toml +++ b/tutorials/06-infinite-mixture-model/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -63,9 +63,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -150,9 +150,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -214,9 +214,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -262,9 +262,9 @@ version = "1.15.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -308,9 +308,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -351,11 +351,17 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExprTools]] git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" @@ -376,9 +382,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -497,10 +503,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -605,9 +611,9 @@ version = "2.1.91+0" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -629,9 +635,9 @@ version = "3.0.0+1" [[LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "5007c1421563108110bbd57f63d8ad4565808818" +git-tree-sha1 = "7d5788011dd273788146d40eb5b1fbdc199d0296" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "5.2.0" +version = "6.0.1" [[LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -789,9 +795,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] @@ -936,9 +942,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1168,9 +1174,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1282,9 +1288,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1334,9 +1340,9 @@ version = "0.2.1" [[UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "ea37e6066bf194ab78f4e747f5245261f17a7175" +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.2" +version = "0.1.3" [[Unzip]] git-tree-sha1 = "34db80951901073501137bdbc3d5a8e7bbd06670" @@ -1380,10 +1386,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1392,10 +1398,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1434,16 +1440,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1494,10 +1500,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"] diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml index d1c143ec9..dc8f0ee6a 100644 --- a/tutorials/07-poisson-regression/Manifest.toml +++ b/tutorials/07-poisson-regression/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -174,9 +174,9 @@ version = "0.10.8" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -192,9 +192,9 @@ version = "0.1.7" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "a6e6ce44a1e0a781772fc795fb7343b1925e9898" +git-tree-sha1 = "42fe66dbc8f1d09a44aa87f18d26926d06a35f84" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.2" +version = "0.15.3" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -244,9 +244,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -298,9 +298,9 @@ version = "1.5.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -350,9 +350,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -393,11 +393,17 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExprTools]] git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" @@ -418,9 +424,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -557,10 +563,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -671,9 +677,9 @@ version = "2.1.91+0" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -861,9 +867,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLDataPattern]] deps = ["LearnBase", "MLLabelUtils", "Random", "SparseArrays", "StatsBase"] @@ -1053,9 +1059,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1314,9 +1320,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1452,9 +1458,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1567,10 +1573,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1579,10 +1585,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1621,16 +1627,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1681,10 +1687,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"] diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml index a746a8e1d..21702f2da 100644 --- a/tutorials/08-multinomial-logistic-regression/Manifest.toml +++ b/tutorials/08-multinomial-logistic-regression/Manifest.toml @@ -1,15 +1,15 @@ # This file is machine-generated - editing it directly is not advised [[ADTypes]] -git-tree-sha1 = "dcfdf328328f2645531c4ddebf841228aef74130" +git-tree-sha1 = "e58c18d2312749847a74f5be80bb0fa53da102bd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.3" +version = "0.1.5" [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -80,9 +80,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -167,9 +167,9 @@ version = "0.10.8" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -185,9 +185,9 @@ version = "0.1.7" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "a6e6ce44a1e0a781772fc795fb7343b1925e9898" +git-tree-sha1 = "42fe66dbc8f1d09a44aa87f18d26926d06a35f84" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.2" +version = "0.15.3" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -237,9 +237,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -291,9 +291,9 @@ version = "1.5.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -343,9 +343,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -386,11 +386,17 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExprTools]] git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" @@ -411,9 +417,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -435,9 +441,9 @@ version = "0.9.20" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "e17cc4dc2d0b0b568e80d937de8ed8341822de67" +git-tree-sha1 = "0b3b52afd0f87b0a3f5ada0466352d125c9db458" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.2.0" +version = "1.2.1" [[FixedPointNumbers]] deps = ["Statistics"] @@ -544,10 +550,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -658,9 +664,9 @@ version = "2.1.91+0" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -682,9 +688,9 @@ version = "3.0.0+1" [[LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "5007c1421563108110bbd57f63d8ad4565808818" +git-tree-sha1 = "7d5788011dd273788146d40eb5b1fbdc199d0296" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "5.2.0" +version = "6.0.1" [[LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -854,9 +860,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLDataPattern]] deps = ["LearnBase", "MLLabelUtils", "Random", "SparseArrays", "StatsBase"] @@ -1046,9 +1052,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1242,9 +1248,9 @@ version = "1.93.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "660322732becf934bf818792f9740984b375d300" +git-tree-sha1 = "668ed6b2265d1adb36b7239501e9369025bd6c78" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.1" +version = "0.3.2" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1308,9 +1314,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1446,9 +1452,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Tricks]] git-tree-sha1 = "aadb748be58b492045b4f56166b5188aa63ce549" @@ -1509,9 +1515,9 @@ version = "0.2.1" [[UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "ea37e6066bf194ab78f4e747f5245261f17a7175" +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.2" +version = "0.1.3" [[Unzip]] git-tree-sha1 = "34db80951901073501137bdbc3d5a8e7bbd06670" @@ -1572,10 +1578,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1584,10 +1590,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1626,16 +1632,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1686,10 +1692,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"] diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml index 51b9d18b4..12bfbe7b8 100644 --- a/tutorials/09-variational-inference/Manifest.toml +++ b/tutorials/09-variational-inference/Manifest.toml @@ -1,15 +1,15 @@ # This file is machine-generated - editing it directly is not advised [[ADTypes]] -git-tree-sha1 = "dcfdf328328f2645531c4ddebf841228aef74130" +git-tree-sha1 = "e58c18d2312749847a74f5be80bb0fa53da102bd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.3" +version = "0.1.5" [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -80,9 +80,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -203,9 +203,9 @@ version = "0.10.8" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -221,9 +221,9 @@ version = "0.1.7" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "a6e6ce44a1e0a781772fc795fb7343b1925e9898" +git-tree-sha1 = "42fe66dbc8f1d09a44aa87f18d26926d06a35f84" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.2" +version = "0.15.3" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -273,9 +273,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -339,9 +339,9 @@ version = "1.5.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -380,10 +380,10 @@ uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" [[Distances]] -deps = ["LinearAlgebra", "Statistics"] -git-tree-sha1 = "a5b88815e6984e9f3256b6ca0dc63109b16a506f" +deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.9.2" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -391,9 +391,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -434,11 +434,17 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExprTools]] git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" @@ -459,9 +465,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -495,9 +501,9 @@ version = "0.9.20" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "e17cc4dc2d0b0b568e80d937de8ed8341822de67" +git-tree-sha1 = "0b3b52afd0f87b0a3f5ada0466352d125c9db458" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.2.0" +version = "1.2.1" [[FixedPointNumbers]] deps = ["Statistics"] @@ -507,9 +513,9 @@ version = "0.8.4" [[Flux]] deps = ["Adapt", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote", "cuDNN"] -git-tree-sha1 = "64005071944bae14fc145661f617eb68b339189c" +git-tree-sha1 = "3e2c3704c2173ab4b1935362384ca878b53d4c34" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.13.16" +version = "0.13.17" [[Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] @@ -576,9 +582,9 @@ version = "1.8.3" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "a3351bc577a6b49297248aadc23a4add1097c2ac" +git-tree-sha1 = "2e57b4a4f9cc15e85a24d603256fe08e527f48d1" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.7.1" +version = "8.8.1" [[GPUArraysCore]] deps = ["Adapt"] @@ -628,10 +634,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -753,9 +759,9 @@ version = "0.2.4" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -943,9 +949,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] @@ -1146,9 +1152,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1365,9 +1371,9 @@ version = "1.93.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "660322732becf934bf818792f9740984b375d300" +git-tree-sha1 = "668ed6b2265d1adb36b7239501e9369025bd6c78" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.1" +version = "0.3.2" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1447,9 +1453,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1609,9 +1615,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Tricks]] git-tree-sha1 = "aadb748be58b492045b4f56166b5188aa63ce549" @@ -1735,10 +1741,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1747,10 +1753,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1789,16 +1795,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1849,10 +1855,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"] diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml index 0230a994f..e8a926595 100644 --- a/tutorials/10-bayesian-differential-equations/Manifest.toml +++ b/tutorials/10-bayesian-differential-equations/Manifest.toml @@ -1,15 +1,15 @@ # This file is machine-generated - editing it directly is not advised [[ADTypes]] -git-tree-sha1 = "dcfdf328328f2645531c4ddebf841228aef74130" +git-tree-sha1 = "e58c18d2312749847a74f5be80bb0fa53da102bd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.3" +version = "0.1.5" [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -86,9 +86,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -98,9 +98,9 @@ version = "0.1.29" [[ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "1d9e98721e71dcf4db5a7d34f55d8aa07c43468f" +git-tree-sha1 = "9e5ad0f651c1be8a355e4d327e9cb3bc135d1b73" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.0.6" +version = "1.0.8" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -202,9 +202,9 @@ version = "0.3.11" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -226,9 +226,9 @@ version = "0.1.12" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "a6e6ce44a1e0a781772fc795fb7343b1925e9898" +git-tree-sha1 = "42fe66dbc8f1d09a44aa87f18d26926d06a35f84" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.2" +version = "0.15.3" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -278,9 +278,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -332,9 +332,9 @@ version = "1.15.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -368,9 +368,9 @@ version = "0.4.0" [[DiffEqBase]] deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "0a7dd11dd243a1f8c71f72f2e5fd54c0bfdeaaab" +git-tree-sha1 = "62c41421bd0facc43dfe4e9776135fe21fd1e1b9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.125.1" +version = "6.126.0" [[DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] @@ -380,9 +380,9 @@ version = "2.26.1" [[DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "50f82e2a705a544af539acc6a03674a4d7eee1d8" +git-tree-sha1 = "26594c6ec8416fb6ef3ed8828fd29c98b10bfaad" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.17.1" +version = "5.17.2" [[DiffResults]] deps = ["StaticArraysCore"] @@ -414,9 +414,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -481,11 +481,17 @@ git-tree-sha1 = "b83b072e7a5eee2050800658f5676b0ff7b37dc6" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" version = "0.0.53+0" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExponentialUtilities]] deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "Printf", "SnoopPrecompile", "SparseArrays", "libblastrampoline_jll"] @@ -512,9 +518,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -541,9 +547,9 @@ version = "1.2.9" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "e17cc4dc2d0b0b568e80d937de8ed8341822de67" +git-tree-sha1 = "0b3b52afd0f87b0a3f5ada0466352d125c9db458" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.2.0" +version = "1.2.1" [[FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"] @@ -616,9 +622,9 @@ version = "3.3.8+0" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "a3351bc577a6b49297248aadc23a4add1097c2ac" +git-tree-sha1 = "2e57b4a4f9cc15e85a24d603256fe08e527f48d1" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.7.1" +version = "8.8.1" [[GPUArraysCore]] deps = ["Adapt"] @@ -680,10 +686,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -816,9 +822,9 @@ version = "0.4.0" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -997,9 +1003,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[LinearSolve]] deps = ["ArrayInterface", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "d4514497594519b3c20e93a609389fddb4ee39ab" +git-tree-sha1 = "c6a6f78167d7b7c19dfb7148161d7f1962a0b361" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.1.13" +version = "2.2.1" [[LogDensityProblems]] deps = ["ArgCheck", "DocStringExtensions", "Random", "Requires", "UnPack"] @@ -1024,9 +1030,9 @@ version = "0.4.9" [[LoopVectorization]] deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "SpecialFunctions", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "3bb62b5003bc7d2d49f26663484267dc49fa1bf5" +git-tree-sha1 = "e4eed22d70ac91d7a4bf9e0f6902383061d17105" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.159" +version = "0.12.162" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] @@ -1042,9 +1048,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] @@ -1262,9 +1268,9 @@ version = "0.12.3" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1511,15 +1517,15 @@ version = "1.93.0" [[SciMLNLSolve]] deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"] -git-tree-sha1 = "2d00015fa0a190220dc5605406b85073f6634391" +git-tree-sha1 = "9dfc8e9e3d58c0c74f1a821c762b5349da13eccf" uuid = "e9a6253c-8580-4d32-9898-8661bb511710" -version = "0.1.7" +version = "0.1.8" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "6a657a73322170eec86fb427661dbee079b85bff" +git-tree-sha1 = "668ed6b2265d1adb36b7239501e9369025bd6c78" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.2.12" +version = "0.3.2" [[SciMLSensitivity]] deps = ["Adapt", "ArrayInterface", "Cassette", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SparseDiffTools", "StaticArraysCore", "Statistics", "StochasticDiffEq", "Tracker", "TruncatedStacktraces", "Zygote", "ZygoteRules"] @@ -1570,9 +1576,9 @@ version = "1.1.0" [[SimpleNonlinearSolve]] deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PrecompileTools", "Reexport", "Requires", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "7c55a3e65aad4ce6e610409cdd564b8d590b9726" +git-tree-sha1 = "56aa73a93cdca493af5155a0338a864ed314222b" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.15" +version = "0.1.16" [[SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -1618,9 +1624,9 @@ version = "0.3.9" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1699,9 +1705,9 @@ version = "6.61.1" [[StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "602a8bef17c744f1de965979398597dfa50e1a2f" +git-tree-sha1 = "26316a9a43d32ecd0c5b342cb36dc86305c73e53" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.4.15" +version = "0.4.16" [[StringManipulation]] git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" @@ -1790,9 +1796,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[ThreadingUtilities]] deps = ["ManualMemory"] -git-tree-sha1 = "c97f60dd4f2331e1a495527f80d242501d2f9865" +git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.1" +version = "0.5.2" [[TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -1814,9 +1820,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[TreeViews]] deps = ["Test"] @@ -1953,10 +1959,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1965,10 +1971,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -2007,16 +2013,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -2067,10 +2073,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"] diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml index fd62cc938..09d93c72f 100644 --- a/tutorials/11-probabilistic-pca/Manifest.toml +++ b/tutorials/11-probabilistic-pca/Manifest.toml @@ -1,15 +1,15 @@ # This file is machine-generated - editing it directly is not advised [[ADTypes]] -git-tree-sha1 = "dcfdf328328f2645531c4ddebf841228aef74130" +git-tree-sha1 = "e58c18d2312749847a74f5be80bb0fa53da102bd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.3" +version = "0.1.5" [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -80,9 +80,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -155,9 +155,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -173,9 +173,9 @@ version = "0.1.7" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "a6e6ce44a1e0a781772fc795fb7343b1925e9898" +git-tree-sha1 = "42fe66dbc8f1d09a44aa87f18d26926d06a35f84" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.2" +version = "0.15.3" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -225,9 +225,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -279,9 +279,9 @@ version = "1.5.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -331,9 +331,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -374,11 +374,17 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExprTools]] git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" @@ -399,9 +405,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -411,9 +417,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "e17cc4dc2d0b0b568e80d937de8ed8341822de67" +git-tree-sha1 = "0b3b52afd0f87b0a3f5ada0466352d125c9db458" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.2.0" +version = "1.2.1" [[FixedPointNumbers]] deps = ["Statistics"] @@ -520,10 +526,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -634,9 +640,9 @@ version = "2.1.91+0" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -824,9 +830,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] @@ -992,9 +998,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1182,9 +1188,9 @@ version = "1.93.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "660322732becf934bf818792f9740984b375d300" +git-tree-sha1 = "668ed6b2265d1adb36b7239501e9369025bd6c78" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.1" +version = "0.3.2" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1248,9 +1254,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1380,9 +1386,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Tricks]] git-tree-sha1 = "aadb748be58b492045b4f56166b5188aa63ce549" @@ -1495,10 +1501,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1507,10 +1513,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1549,16 +1555,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1609,10 +1615,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"] diff --git a/tutorials/12-gaussian-process/Manifest.toml b/tutorials/12-gaussian-process/Manifest.toml index 8cae02479..fe18c7766 100644 --- a/tutorials/12-gaussian-process/Manifest.toml +++ b/tutorials/12-gaussian-process/Manifest.toml @@ -1,15 +1,15 @@ # This file is machine-generated - editing it directly is not advised [[ADTypes]] -git-tree-sha1 = "dcfdf328328f2645531c4ddebf841228aef74130" +git-tree-sha1 = "e58c18d2312749847a74f5be80bb0fa53da102bd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.3" +version = "0.1.5" [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractGPs]] deps = ["ChainRulesCore", "Distributions", "FillArrays", "IrrationalConstants", "KernelFunctions", "LinearAlgebra", "PDMats", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"] @@ -74,9 +74,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -161,9 +161,9 @@ version = "0.10.8" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -225,9 +225,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -279,9 +279,9 @@ version = "1.5.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -331,9 +331,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -374,11 +374,17 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExprTools]] git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" @@ -399,9 +405,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -423,9 +429,9 @@ version = "0.9.20" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "e17cc4dc2d0b0b568e80d937de8ed8341822de67" +git-tree-sha1 = "0b3b52afd0f87b0a3f5ada0466352d125c9db458" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.2.0" +version = "1.2.1" [[FixedPointNumbers]] deps = ["Statistics"] @@ -532,10 +538,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -646,9 +652,9 @@ version = "2.1.91+0" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -842,9 +848,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] @@ -995,9 +1001,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1197,9 +1203,9 @@ version = "1.93.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "660322732becf934bf818792f9740984b375d300" +git-tree-sha1 = "668ed6b2265d1adb36b7239501e9369025bd6c78" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.1" +version = "0.3.2" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1263,9 +1269,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1389,9 +1395,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Tricks]] git-tree-sha1 = "aadb748be58b492045b4f56166b5188aa63ce549" @@ -1509,10 +1515,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1521,10 +1527,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1563,16 +1569,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1623,10 +1629,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"] diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml index b3e4df558..6955da703 100644 --- a/tutorials/13-seasonal-time-series/Manifest.toml +++ b/tutorials/13-seasonal-time-series/Manifest.toml @@ -1,15 +1,15 @@ # This file is machine-generated - editing it directly is not advised [[ADTypes]] -git-tree-sha1 = "dcfdf328328f2645531c4ddebf841228aef74130" +git-tree-sha1 = "e58c18d2312749847a74f5be80bb0fa53da102bd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.3" +version = "0.1.5" [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -80,9 +80,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -155,9 +155,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -173,9 +173,9 @@ version = "0.1.7" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "a6e6ce44a1e0a781772fc795fb7343b1925e9898" +git-tree-sha1 = "42fe66dbc8f1d09a44aa87f18d26926d06a35f84" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.2" +version = "0.15.3" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -225,9 +225,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -273,9 +273,9 @@ version = "1.15.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -325,9 +325,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -368,11 +368,17 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExprTools]] git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" @@ -393,9 +399,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -405,9 +411,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "e17cc4dc2d0b0b568e80d937de8ed8341822de67" +git-tree-sha1 = "0b3b52afd0f87b0a3f5ada0466352d125c9db458" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.2.0" +version = "1.2.1" [[FixedPointNumbers]] deps = ["Statistics"] @@ -514,10 +520,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -622,9 +628,9 @@ version = "2.1.91+0" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -646,9 +652,9 @@ version = "3.0.0+1" [[LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "5007c1421563108110bbd57f63d8ad4565808818" +git-tree-sha1 = "7d5788011dd273788146d40eb5b1fbdc199d0296" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "5.2.0" +version = "6.0.1" [[LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -812,9 +818,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] @@ -980,9 +986,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1158,9 +1164,9 @@ version = "1.93.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "660322732becf934bf818792f9740984b375d300" +git-tree-sha1 = "668ed6b2265d1adb36b7239501e9369025bd6c78" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.1" +version = "0.3.2" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1218,9 +1224,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1350,9 +1356,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Tricks]] git-tree-sha1 = "aadb748be58b492045b4f56166b5188aa63ce549" @@ -1413,9 +1419,9 @@ version = "0.2.1" [[UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "ea37e6066bf194ab78f4e747f5245261f17a7175" +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.2" +version = "0.1.3" [[Unzip]] git-tree-sha1 = "34db80951901073501137bdbc3d5a8e7bbd06670" @@ -1465,10 +1471,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1477,10 +1483,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1519,16 +1525,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1579,10 +1585,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"] diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml index 41afb804b..d11a626cc 100644 --- a/tutorials/14-minituring/Manifest.toml +++ b/tutorials/14-minituring/Manifest.toml @@ -2,15 +2,15 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "a21654aa796bcc993284dace0d17d1022774c0a3" +git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.1" +version = "4.4.2" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] @@ -63,9 +63,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -133,9 +133,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -167,9 +167,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -204,9 +204,9 @@ version = "1.15.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -250,9 +250,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -300,9 +300,9 @@ version = "0.1.9" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -434,9 +434,9 @@ version = "1.4.1" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -446,9 +446,9 @@ version = "0.6.7" [[LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "5007c1421563108110bbd57f63d8ad4565808818" +git-tree-sha1 = "7d5788011dd273788146d40eb5b1fbdc199d0296" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "5.2.0" +version = "6.0.1" [[LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -540,9 +540,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] @@ -810,9 +810,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -912,9 +912,9 @@ version = "0.2.25" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker", "ZygoteRules"] @@ -941,9 +941,9 @@ version = "0.2.1" [[UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "ea37e6066bf194ab78f4e747f5245261f17a7175" +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.2" +version = "0.1.3" [[WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml index ae727e5c1..430b7a0cd 100644 --- a/tutorials/docs-00-getting-started/Manifest.toml +++ b/tutorials/docs-00-getting-started/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d3f758863a47ceef2248d136657cb9c033603641" +git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.8" +version = "7.4.11" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -162,9 +162,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "61549d9b52c88df34d21bd306dba1d43bb039c87" +git-tree-sha1 = "1cdf290d4feec68824bfb84f4bfc9f3aba185647" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.51.0" +version = "1.51.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -180,9 +180,9 @@ version = "0.1.7" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "a6e6ce44a1e0a781772fc795fb7343b1925e9898" +git-tree-sha1 = "42fe66dbc8f1d09a44aa87f18d26926d06a35f84" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.2" +version = "0.15.3" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -232,9 +232,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -280,9 +280,9 @@ version = "1.15.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.14" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -332,9 +332,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b" +git-tree-sha1 = "e76a3281de2719d7c81ed62c6ea7057380c87b1d" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.95" +version = "0.25.98" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] @@ -375,11 +375,17 @@ git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.9" + [[Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[ExprTools]] git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" @@ -400,9 +406,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "06bf20fcecd258eccf9a6ef7b99856a4dfe7b64c" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.0" +version = "1.7.1" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -521,10 +527,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e77dbf117412d4f164a464d610ee6050cc75272" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "7f5ef966a02a8fdf3df2ca03108a88447cb3c6f0" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.6" +version = "1.9.8" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -629,9 +635,9 @@ version = "2.1.91+0" [[KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "47be64f040a7ece575c2b5f53ca6da7b548d69f4" +git-tree-sha1 = "b48617c5d764908b5fac493cd907cf33cc11eec1" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.4" +version = "0.9.6" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -653,9 +659,9 @@ version = "3.0.0+1" [[LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "5007c1421563108110bbd57f63d8ad4565808818" +git-tree-sha1 = "7d5788011dd273788146d40eb5b1fbdc199d0296" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "5.2.0" +version = "6.0.1" [[LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -813,9 +819,9 @@ version = "0.2.6" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] @@ -981,9 +987,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "5a6ab2f64388fd1175effdf73fe5933ef1e0bac0" +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.0" +version = "2.7.1" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1219,9 +1225,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1345,9 +1351,9 @@ version = "0.9.13" [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37" +git-tree-sha1 = "a66fb81baec325cf6ccafa243af573b031e87b00" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.76" +version = "0.4.77" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1397,9 +1403,9 @@ version = "0.2.1" [[UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "ea37e6066bf194ab78f4e747f5245261f17a7175" +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.2" +version = "0.1.3" [[Unzip]] git-tree-sha1 = "34db80951901073501137bdbc3d5a8e7bbd06670" @@ -1449,10 +1455,10 @@ uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.11+0" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] @@ -1461,10 +1467,10 @@ uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.4+0" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1503,16 +1509,16 @@ uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.1+0" [[Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.15.0+0" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] @@ -1563,10 +1569,10 @@ uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.0+0" [[Zlib_jll]] deps = ["Libdl"]