From 48ddd55f987bde18d36adc25cc81f533205d5dfc Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Sat, 4 Feb 2023 09:12:52 +0100 Subject: [PATCH 1/7] Update manifest files (#382) Co-authored-by: yebai --- tutorials/00-introduction/Manifest.toml | 20 ++--- .../01-gaussian-mixture-model/Manifest.toml | 20 ++--- .../02-logistic-regression/Manifest.toml | 20 ++--- .../03-bayesian-neural-network/Manifest.toml | 49 +++++++------ .../04-hidden-markov-model/Manifest.toml | 20 ++--- tutorials/05-linear-regression/Manifest.toml | 20 ++--- .../06-infinite-mixture-model/Manifest.toml | 20 ++--- tutorials/07-poisson-regression/Manifest.toml | 20 ++--- .../Manifest.toml | 20 ++--- .../09-variational-inference/Manifest.toml | 73 ++++++------------- .../Manifest.toml | 52 ++++++------- tutorials/11-probabilistic-pca/Manifest.toml | 20 ++--- tutorials/12-gaussian-process/Manifest.toml | 31 ++++---- .../13-seasonal-time-series/Manifest.toml | 20 ++--- tutorials/14-minituring/Manifest.toml | 16 ++-- .../docs-00-getting-started/Manifest.toml | 20 ++--- 16 files changed, 207 insertions(+), 234 deletions(-) diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml index 3a78565d5..4476e5a46 100644 --- a/tutorials/00-introduction/Manifest.toml +++ b/tutorials/00-introduction/Manifest.toml @@ -215,9 +215,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -765,9 +765,9 @@ version = "0.4.9" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -880,9 +880,9 @@ version = "0.5.4" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +945,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -978,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[Preferences]] deps = ["TOML"] diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml index 3a78565d5..4476e5a46 100644 --- a/tutorials/01-gaussian-mixture-model/Manifest.toml +++ b/tutorials/01-gaussian-mixture-model/Manifest.toml @@ -215,9 +215,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -765,9 +765,9 @@ version = "0.4.9" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -880,9 +880,9 @@ version = "0.5.4" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +945,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -978,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[Preferences]] deps = ["TOML"] diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml index 719ea1883..8e86ca1da 100644 --- a/tutorials/02-logistic-regression/Manifest.toml +++ b/tutorials/02-logistic-regression/Manifest.toml @@ -227,9 +227,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -813,9 +813,9 @@ version = "0.4.9" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -952,9 +952,9 @@ version = "0.5.4" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1017,9 +1017,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1050,9 +1050,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[PooledArrays]] deps = ["DataAPI", "Future"] diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml index 46aece023..eab00b855 100644 --- a/tutorials/03-bayesian-neural-network/Manifest.toml +++ b/tutorials/03-bayesian-neural-network/Manifest.toml @@ -208,10 +208,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[Compat]] -deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] -git-tree-sha1 = "78bee250c6826e1cf805a88b7f1e86025275d208" +deps = ["Dates", "LinearAlgebra", "UUIDs"] +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "3.46.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -476,9 +476,9 @@ version = "3.3.8+0" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "494f1e456000c00c93dde79b38094e023f639dac" +git-tree-sha1 = "4dfaff044eb2ce11a897fecd85538310e60b91e6" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.6.1" +version = "8.6.2" [[GPUArraysCore]] deps = ["Adapt"] @@ -807,9 +807,9 @@ version = "0.4.9" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -835,10 +835,10 @@ uuid = "d8e11817-5142-5d16-987a-aa16d5891078" version = "0.4.16" [[MLUtils]] -deps = ["ChainRulesCore", "DataAPI", "DelimitedFiles", "FLoops", "FoldsThreads", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] -git-tree-sha1 = "82c1104919d664ab1024663ad851701415300c5f" +deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "FoldsThreads", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] +git-tree-sha1 = "266c67f773feb756474c2c4a7424ea5363290300" uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.3.1" +version = "0.4.0" [[MacroTools]] deps = ["Markdown", "Random"] @@ -928,9 +928,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -939,10 +939,10 @@ uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.5+1" [[OneHotArrays]] -deps = ["Adapt", "ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "MLUtils", "NNlib"] -git-tree-sha1 = "aee0130122fa7c1f3d394231376f07869f1e097c" +deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] +git-tree-sha1 = "f511fca956ed9e70b80cd3417bb8c2dde4b68644" uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" -version = "0.2.0" +version = "0.2.3" [[OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -989,9 +989,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1022,9 +1022,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[Preferences]] deps = ["TOML"] @@ -1038,10 +1038,10 @@ uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" version = "0.2.0" [[PrettyTables]] -deps = ["Crayons", "Formatting", "Markdown", "Reexport", "Tables"] -git-tree-sha1 = "dfb54c4e414caa595a1f2ed759b160f5a3ddcba5" +deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "1.3.1" +version = "2.2.2" [[Printf]] deps = ["Unicode"] @@ -1293,6 +1293,11 @@ git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "1.1.1" +[[StringManipulation]] +git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.0" + [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml index 3a78565d5..4476e5a46 100644 --- a/tutorials/04-hidden-markov-model/Manifest.toml +++ b/tutorials/04-hidden-markov-model/Manifest.toml @@ -215,9 +215,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -765,9 +765,9 @@ version = "0.4.9" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -880,9 +880,9 @@ version = "0.5.4" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +945,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -978,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[Preferences]] deps = ["TOML"] diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml index 874ce1581..94f3def5d 100644 --- a/tutorials/05-linear-regression/Manifest.toml +++ b/tutorials/05-linear-regression/Manifest.toml @@ -233,9 +233,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -843,9 +843,9 @@ version = "0.4.9" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -981,9 +981,9 @@ version = "0.5.4" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1046,9 +1046,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1079,9 +1079,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[PooledArrays]] deps = ["DataAPI", "Future"] diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml index 8ff3afd48..c858026f6 100644 --- a/tutorials/06-infinite-mixture-model/Manifest.toml +++ b/tutorials/06-infinite-mixture-model/Manifest.toml @@ -197,9 +197,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -735,9 +735,9 @@ version = "0.4.9" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -833,9 +833,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -894,9 +894,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -927,9 +927,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[Preferences]] deps = ["TOML"] diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml index 719ea1883..8e86ca1da 100644 --- a/tutorials/07-poisson-regression/Manifest.toml +++ b/tutorials/07-poisson-regression/Manifest.toml @@ -227,9 +227,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -813,9 +813,9 @@ version = "0.4.9" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -952,9 +952,9 @@ version = "0.5.4" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1017,9 +1017,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1050,9 +1050,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[PooledArrays]] deps = ["DataAPI", "Future"] diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml index ca5804440..c39a62cb7 100644 --- a/tutorials/08-multinomial-logistic-regression/Manifest.toml +++ b/tutorials/08-multinomial-logistic-regression/Manifest.toml @@ -227,9 +227,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -807,9 +807,9 @@ version = "0.4.9" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -946,9 +946,9 @@ version = "0.5.4" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1011,9 +1011,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1044,9 +1044,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[PooledArrays]] deps = ["DataAPI", "Future"] diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml index 8b1bfd389..a48601fa3 100644 --- a/tutorials/09-variational-inference/Manifest.toml +++ b/tutorials/09-variational-inference/Manifest.toml @@ -138,11 +138,6 @@ git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" uuid = "76274a88-744f-5084-9051-94815aaf08c4" version = "0.10.6" -[[BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" @@ -256,9 +251,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -386,9 +381,9 @@ version = "0.6.43" [[DocStringExtensions]] deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "b19534d1895d702889b219c382a6e18010797f0b" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.8.6" [[Downloads]] deps = ["ArgTools", "LibCURL", "NetworkOptions"] @@ -565,9 +560,9 @@ version = "1.8.1" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "494f1e456000c00c93dde79b38094e023f639dac" +git-tree-sha1 = "4dfaff044eb2ce11a897fecd85538310e60b91e6" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.6.1" +version = "8.6.2" [[GPUArraysCore]] deps = ["Adapt"] @@ -617,10 +612,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "37e4657cd56b11abe3d10cd4a1ec5fbdb4180263" +deps = ["Base64", "Dates", "IniFile", "MbedTLS", "Sockets"] +git-tree-sha1 = "c7ec02c4c6a039a98a15f955462cd7aea5df4508" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.7.4" +version = "0.8.19" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -907,9 +902,9 @@ version = "0.4.9" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -1051,9 +1046,9 @@ version = "0.5.4" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1075,12 +1070,6 @@ uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -[[OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "6503b77492fd7fcb9379bf73cd31035670e3c509" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.3.3" - [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" @@ -1122,9 +1111,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1155,9 +1144,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1272,10 +1261,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "Tables", "ZygoteRules"] +git-tree-sha1 = "a5ce741acddc02f0d4fc6505463ca89697d7fb23" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.32.3" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1322,10 +1311,10 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "Tables"] +git-tree-sha1 = "fe89a8113ea445bcff9ee570077830674babb534" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.81.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1373,11 +1362,6 @@ git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" version = "1.0.3" -[[SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - [[SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" @@ -1487,12 +1471,6 @@ version = "0.6.14" deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" -[[SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" - [[TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" @@ -1571,11 +1549,6 @@ git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" -[[URIs]] -git-tree-sha1 = "ac00576f90d8a259f2c9d823e91d1de3fd44d348" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.1" - [[UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml index b2cc6473f..6e0fbe700 100644 --- a/tutorials/10-bayesian-differential-equations/Manifest.toml +++ b/tutorials/10-bayesian-differential-equations/Manifest.toml @@ -297,9 +297,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -371,9 +371,9 @@ version = "0.1.2" [[DelayDiffEq]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "UnPack"] -git-tree-sha1 = "478408ad9195fce93f2837a18519fbe7f7795b6d" +git-tree-sha1 = "d94e9902cf38131d596a7644b8aa128cf172d9a1" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.40.5" +version = "5.40.6" [[DelimitedFiles]] deps = ["Mmap"] @@ -484,9 +484,9 @@ version = "1.0.4" [[Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "Printf", "Random"] -git-tree-sha1 = "2e3f8d30ab0825f3b293b33093ca3262d0f20500" +git-tree-sha1 = "4806f20cb6c9b71546c3afa2c9fefc8190bfdc61" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.10.15" +version = "0.10.16" [[EnzymeCore]] deps = ["Adapt"] @@ -635,9 +635,9 @@ version = "3.3.8+0" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "494f1e456000c00c93dde79b38094e023f639dac" +git-tree-sha1 = "4dfaff044eb2ce11a897fecd85538310e60b91e6" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.6.1" +version = "8.6.2" [[GPUArraysCore]] deps = ["Adapt"] @@ -1042,15 +1042,15 @@ version = "0.4.9" [[LoopVectorization]] deps = ["ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDDualNumbers", "SIMDTypes", "SLEEFPirates", "SnoopPrecompile", "SpecialFunctions", "Static", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "c3a7202222318121bf1db4547a27a1afd0cf9b88" +git-tree-sha1 = "f127dff5c29692069c8ada8267864d252d417821" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.148" +version = "0.12.149" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -1197,9 +1197,9 @@ version = "0.5.4" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1258,9 +1258,9 @@ version = "1.4.1" [[OrdinaryDiffEq]] deps = ["Adapt", "ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceGPUArrays", "ArrayInterfaceStaticArrays", "ArrayInterfaceStaticArraysCore", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SimpleNonlinearSolve", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "0e9df1f4a5fee8c9a6e1349f363eae68b35bbe00" +git-tree-sha1 = "f1f22e8a603a188ca76ae39a5f6caf560bd3d024" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.40.1" +version = "6.41.0" [[PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1280,9 +1280,9 @@ version = "0.12.3" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1313,9 +1313,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[PoissonRandom]] deps = ["Random"] @@ -1535,9 +1535,9 @@ version = "0.1.3" [[SciMLSensitivity]] deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceTracker", "Cassette", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SimpleNonlinearSolve", "StaticArrays", "Statistics", "StochasticDiffEq", "Tracker", "Zygote", "ZygoteRules"] -git-tree-sha1 = "87fd15ed1a5e35beddc7d330063faa833febacf3" +git-tree-sha1 = "afb47752f1eb30c89fdcf8d7fd761e508c3ef43d" uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.18.0" +version = "7.19.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1582,9 +1582,9 @@ version = "1.1.0" [[SimpleNonlinearSolve]] deps = ["ArrayInterfaceCore", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "Reexport", "SciMLBase", "SnoopPrecompile", "StaticArraysCore"] -git-tree-sha1 = "8a3219de74d2ec30c03d239bd2e0ae7d69978103" +git-tree-sha1 = "9b941eeecd4f051f5656383fbebe7f7d0a89fc0d" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.8" +version = "0.1.9" [[SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -1731,9 +1731,9 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" [[Sundials]] deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "Reexport", "SciMLBase", "SnoopPrecompile", "SparseArrays", "Sundials_jll"] -git-tree-sha1 = "016f524e060573d77bb8d60cbbb3ffbc7205804b" +git-tree-sha1 = "3b96c84832be31fce33de760a2cd5f4fdc050c23" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "4.12.0" +version = "4.13.0" [[Sundials_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "OpenBLAS_jll", "Pkg", "SuiteSparse_jll"] diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml index e4948beed..659e922c3 100644 --- a/tutorials/11-probabilistic-pca/Manifest.toml +++ b/tutorials/11-probabilistic-pca/Manifest.toml @@ -215,9 +215,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -771,9 +771,9 @@ version = "0.4.9" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -886,9 +886,9 @@ version = "0.5.4" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -951,9 +951,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -984,9 +984,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[PooledArrays]] deps = ["DataAPI", "Future"] diff --git a/tutorials/12-gaussian-process/Manifest.toml b/tutorials/12-gaussian-process/Manifest.toml index 98e5b003a..7c6095aef 100644 --- a/tutorials/12-gaussian-process/Manifest.toml +++ b/tutorials/12-gaussian-process/Manifest.toml @@ -121,10 +121,10 @@ uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.8+0" [[CSV]] -deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "SnoopPrecompile", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "c700cce799b51c9045473de751e9319bdd1c6e94" +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings"] +git-tree-sha1 = "c5fd7cd27ac4aed0acf4b73948f0110ff2a854b2" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.9" +version = "0.10.7" [[Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -210,9 +210,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -784,9 +784,9 @@ version = "0.4.9" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -888,9 +888,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -943,9 +943,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -976,9 +976,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1377,11 +1377,6 @@ git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" version = "0.5.5" -[[WorkerUtilities]] -git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" -uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" -version = "1.6.1" - [[XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] git-tree-sha1 = "93c41695bc1c08c46c5899f4fe06d6ead504bb73" diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml index 3a78565d5..4476e5a46 100644 --- a/tutorials/13-seasonal-time-series/Manifest.toml +++ b/tutorials/13-seasonal-time-series/Manifest.toml @@ -215,9 +215,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -765,9 +765,9 @@ version = "0.4.9" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -880,9 +880,9 @@ version = "0.5.4" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +945,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -978,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[Preferences]] deps = ["TOML"] diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml index dc15e3856..d2d65eb89 100644 --- a/tutorials/14-minituring/Manifest.toml +++ b/tutorials/14-minituring/Manifest.toml @@ -150,9 +150,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -295,9 +295,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "deed294cde3de20ae0b2e0355a6c4e1c6a5ceffc" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.12.8" [[Formatting]] deps = ["Printf"] @@ -493,9 +493,9 @@ version = "1.0.0" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -580,9 +580,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[OpenLibm_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml index 3a78565d5..4476e5a46 100644 --- a/tutorials/docs-00-getting-started/Manifest.toml +++ b/tutorials/docs-00-getting-started/Manifest.toml @@ -215,9 +215,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "00a2cccc7f098ff3b66806862d275ca3db9e6e5a" +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.5.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -765,9 +765,9 @@ version = "0.4.9" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8577f598f0991e7bdf9472a8a59938b1e253b493" +git-tree-sha1 = "c659f7508035a7bdd5102aef2de028ab035f289a" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "5.6.1" +version = "5.7.1" [[MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -880,9 +880,9 @@ version = "0.5.4" [[OffsetArrays]] deps = ["Adapt"] -git-tree-sha1 = "f71d8950b724e9ff6110fc948dff5a329f901d64" +git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.8" +version = "1.12.9" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +945,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" +git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.3" +version = "2.5.4" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -978,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "0a3a23e0c67adf9433111467b0522077c596de58" +git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.3" +version = "1.38.4" [[Preferences]] deps = ["TOML"] From 3c891bff6e3561bed36f73258a5b0123bb95f91e Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Sat, 11 Feb 2023 11:04:59 +0000 Subject: [PATCH 2/7] Update manifest files (#383) Co-authored-by: yebai --- tutorials/00-introduction/Manifest.toml | 69 +++++--- .../01-gaussian-mixture-model/Manifest.toml | 69 +++++--- .../02-logistic-regression/Manifest.toml | 69 +++++--- .../03-bayesian-neural-network/Manifest.toml | 131 +++++++++----- .../04-hidden-markov-model/Manifest.toml | 69 +++++--- tutorials/05-linear-regression/Manifest.toml | 73 +++++--- .../06-infinite-mixture-model/Manifest.toml | 69 +++++--- tutorials/07-poisson-regression/Manifest.toml | 69 +++++--- .../Manifest.toml | 69 +++++--- .../09-variational-inference/Manifest.toml | 137 +++++++++------ .../Manifest.toml | 162 +++++++++--------- tutorials/11-probabilistic-pca/Manifest.toml | 69 +++++--- tutorials/12-gaussian-process/Manifest.toml | 69 +++++--- .../13-seasonal-time-series/Manifest.toml | 69 +++++--- tutorials/14-minituring/Manifest.toml | 24 +-- .../docs-00-getting-started/Manifest.toml | 69 +++++--- 16 files changed, 784 insertions(+), 502 deletions(-) diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml index 4476e5a46..54d734425 100644 --- a/tutorials/00-introduction/Manifest.toml +++ b/tutorials/00-introduction/Manifest.toml @@ -145,9 +145,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -470,15 +470,15 @@ version = "0.1.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -655,6 +655,12 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -750,9 +756,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -843,9 +849,9 @@ version = "0.10.0" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -906,9 +912,9 @@ version = "1.3.3" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +951,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -978,9 +984,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[Preferences]] deps = ["TOML"] @@ -1018,9 +1024,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1060,10 +1066,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.37.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1110,10 +1116,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.84.0" + +[[SciMLOperators]] +deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.1.21" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1189,9 +1201,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1313,6 +1325,11 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml index 4476e5a46..54d734425 100644 --- a/tutorials/01-gaussian-mixture-model/Manifest.toml +++ b/tutorials/01-gaussian-mixture-model/Manifest.toml @@ -145,9 +145,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -470,15 +470,15 @@ version = "0.1.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -655,6 +655,12 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -750,9 +756,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -843,9 +849,9 @@ version = "0.10.0" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -906,9 +912,9 @@ version = "1.3.3" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +951,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -978,9 +984,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[Preferences]] deps = ["TOML"] @@ -1018,9 +1024,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1060,10 +1066,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.37.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1110,10 +1116,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.84.0" + +[[SciMLOperators]] +deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.1.21" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1189,9 +1201,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1313,6 +1325,11 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml index 8e86ca1da..0413b2a08 100644 --- a/tutorials/02-logistic-regression/Manifest.toml +++ b/tutorials/02-logistic-regression/Manifest.toml @@ -157,9 +157,9 @@ version = "0.10.7" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -506,15 +506,15 @@ version = "0.1.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -697,6 +697,12 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -798,9 +804,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -915,9 +921,9 @@ version = "0.10.0" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -978,9 +984,9 @@ version = "1.3.3" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1017,9 +1023,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1050,9 +1056,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1096,9 +1102,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1150,10 +1156,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.37.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1200,10 +1206,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.84.0" + +[[SciMLOperators]] +deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.1.21" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1284,9 +1296,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1420,6 +1432,11 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml index eab00b855..e68b59ebc 100644 --- a/tutorials/03-bayesian-neural-network/Manifest.toml +++ b/tutorials/03-bayesian-neural-network/Manifest.toml @@ -25,9 +25,9 @@ version = "0.4.4" [[Accessors]] deps = ["Compat", "CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Requires", "StaticArrays", "Test"] -git-tree-sha1 = "f3d4132fa63a6c62ab19b5765daf87ce2d36076c" +git-tree-sha1 = "b9661b900b50ba475145b311a9a0ef9d2a9c85ea" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.25" +version = "0.1.26" [[Adapt]] deps = ["LinearAlgebra"] @@ -96,9 +96,9 @@ version = "0.4.6" [[BFloat16s]] deps = ["LinearAlgebra", "Printf", "Random", "Test"] -git-tree-sha1 = "a598ecb0d717092b5539dbbe890c98bac842b072" +git-tree-sha1 = "dbf84058d0a8cbbadee18d25cf606934b22d7c66" uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" -version = "0.2.0" +version = "0.4.2" [[BangBang]] deps = ["Compat", "ConstructionBase", "Future", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables", "ZygoteRules"] @@ -132,10 +132,34 @@ uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.4.2" [[CUDA]] -deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "TimerOutputs"] -git-tree-sha1 = "6717cb9a3425ebb7b31ca4f832823615d175f64a" +deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions"] +git-tree-sha1 = "edff14c60784c8f7191a62a23b15a421185bc8a8" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "3.13.1" +version = "4.0.1" + +[[CUDA_Driver_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] +git-tree-sha1 = "75d7896d1ec079ef10d3aee8f3668c11354c03a1" +uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" +version = "0.2.0+0" + +[[CUDA_Runtime_Discovery]] +deps = ["Libdl"] +git-tree-sha1 = "58dd8ec29f54f08c04b052d2c2fa6760b4f4b3a4" +uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" +version = "0.1.1" + +[[CUDA_Runtime_jll]] +deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] +git-tree-sha1 = "d3e6ccd30f84936c1a3a53d622d85d7d3f9b9486" +uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" +version = "0.2.3+2" + +[[CUDNN_jll]] +deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] +git-tree-sha1 = "57011df4fce448828165e566af9befa2ea94350a" +uuid = "62b44479-cb7b-5706-934f-f13b2eb2e645" +version = "8.6.0+3" [[Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -151,9 +175,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -407,9 +431,9 @@ version = "0.8.4" [[Flux]] deps = ["Adapt", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "OneHotArrays", "Optimisers", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "Zygote"] -git-tree-sha1 = "518b553ec3776dde058aebd2750c109d04ee5593" +git-tree-sha1 = "c258e51850ac1fdc465f62380a61995d4a66d603" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.13.11" +version = "0.13.12" [[FoldsThreads]] deps = ["Accessors", "FunctionWrappers", "InitialValues", "SplittablesBase", "Transducers"] @@ -488,21 +512,21 @@ version = "0.1.3" [[GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "48832a7cacbe56e591a7bef690c78b9d00bcc692" +git-tree-sha1 = "95185985a5d2388c6d0fedb06181ad4ddd40e0cb" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.17.1" +version = "0.17.2" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -665,9 +689,9 @@ version = "3.0.0+1" [[LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "b8ae281340f0d3e973aae7b96fb7502b0119b376" +git-tree-sha1 = "df115c31f5c163697eede495918d8e85045c8f04" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "4.15.0" +version = "4.16.0" [[LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] @@ -697,6 +721,12 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -792,9 +822,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -890,15 +920,15 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NNlibCUDA]] -deps = ["Adapt", "CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics"] -git-tree-sha1 = "b05a082b08a3af0e5c576883bc6dfb6513e7e478" +deps = ["Adapt", "CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics", "cuDNN"] +git-tree-sha1 = "f94a9684394ff0d325cc12b06da7032d8be01aaf" uuid = "a00861dc-f156-4864-bf3c-e6376f28a68d" -version = "0.2.6" +version = "0.2.7" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -950,9 +980,9 @@ uuid = "05823500-19ac-5b8b-9628-191a04bc5112" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -989,9 +1019,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1022,9 +1052,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[Preferences]] deps = ["TOML"] @@ -1067,9 +1097,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1121,10 +1151,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.37.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1177,10 +1207,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.84.0" + +[[SciMLOperators]] +deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.1.21" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1256,9 +1292,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1368,6 +1404,11 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" @@ -1575,6 +1616,12 @@ git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" uuid = "700de1a5-db45-46bc-99cf-38207098b444" version = "0.2.2" +[[cuDNN]] +deps = ["CEnum", "CUDA", "CUDNN_jll"] +git-tree-sha1 = "c0ffcb38d1e8c0bbcd3dab2559cf9c369130b2f2" +uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" +version = "1.0.1" + [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml index 4476e5a46..54d734425 100644 --- a/tutorials/04-hidden-markov-model/Manifest.toml +++ b/tutorials/04-hidden-markov-model/Manifest.toml @@ -145,9 +145,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -470,15 +470,15 @@ version = "0.1.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -655,6 +655,12 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -750,9 +756,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -843,9 +849,9 @@ version = "0.10.0" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -906,9 +912,9 @@ version = "1.3.3" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +951,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -978,9 +984,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[Preferences]] deps = ["TOML"] @@ -1018,9 +1024,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1060,10 +1066,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.37.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1110,10 +1116,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.84.0" + +[[SciMLOperators]] +deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.1.21" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1189,9 +1201,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1313,6 +1325,11 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml index 94f3def5d..1fa574950 100644 --- a/tutorials/05-linear-regression/Manifest.toml +++ b/tutorials/05-linear-regression/Manifest.toml @@ -25,9 +25,9 @@ version = "0.4.4" [[Accessors]] deps = ["Compat", "CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Requires", "StaticArrays", "Test"] -git-tree-sha1 = "f3d4132fa63a6c62ab19b5765daf87ce2d36076c" +git-tree-sha1 = "b9661b900b50ba475145b311a9a0ef9d2a9c85ea" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.25" +version = "0.1.26" [[Adapt]] deps = ["LinearAlgebra"] @@ -163,9 +163,9 @@ version = "0.10.7" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -536,15 +536,15 @@ version = "0.1.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -733,6 +733,12 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -828,9 +834,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -938,9 +944,9 @@ version = "0.10.0" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -1007,9 +1013,9 @@ version = "1.3.3" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1046,9 +1052,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1079,9 +1085,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1130,9 +1136,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1184,10 +1190,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.37.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1234,10 +1240,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.84.0" + +[[SciMLOperators]] +deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.1.21" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1329,9 +1341,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1465,6 +1477,11 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml index c858026f6..32de7ba92 100644 --- a/tutorials/06-infinite-mixture-model/Manifest.toml +++ b/tutorials/06-infinite-mixture-model/Manifest.toml @@ -133,9 +133,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -440,15 +440,15 @@ version = "0.1.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -625,6 +625,12 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -720,9 +726,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -807,9 +813,9 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -855,9 +861,9 @@ version = "1.3.3" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -894,9 +900,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -927,9 +933,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[Preferences]] deps = ["TOML"] @@ -967,9 +973,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1009,10 +1015,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.37.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1059,10 +1065,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.84.0" + +[[SciMLOperators]] +deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.1.21" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1132,9 +1144,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1244,6 +1256,11 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml index 8e86ca1da..0413b2a08 100644 --- a/tutorials/07-poisson-regression/Manifest.toml +++ b/tutorials/07-poisson-regression/Manifest.toml @@ -157,9 +157,9 @@ version = "0.10.7" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -506,15 +506,15 @@ version = "0.1.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -697,6 +697,12 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -798,9 +804,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -915,9 +921,9 @@ version = "0.10.0" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -978,9 +984,9 @@ version = "1.3.3" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1017,9 +1023,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1050,9 +1056,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1096,9 +1102,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1150,10 +1156,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.37.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1200,10 +1206,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.84.0" + +[[SciMLOperators]] +deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.1.21" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1284,9 +1296,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1420,6 +1432,11 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml index c39a62cb7..ffed70fba 100644 --- a/tutorials/08-multinomial-logistic-regression/Manifest.toml +++ b/tutorials/08-multinomial-logistic-regression/Manifest.toml @@ -157,9 +157,9 @@ version = "0.10.7" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -500,15 +500,15 @@ version = "0.1.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -691,6 +691,12 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -792,9 +798,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -909,9 +915,9 @@ version = "0.10.0" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -972,9 +978,9 @@ version = "1.3.3" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1011,9 +1017,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1044,9 +1050,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1090,9 +1096,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1144,10 +1150,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.37.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1194,10 +1200,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.84.0" + +[[SciMLOperators]] +deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.1.21" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1273,9 +1285,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1403,6 +1415,11 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml index a48601fa3..90d7913eb 100644 --- a/tutorials/09-variational-inference/Manifest.toml +++ b/tutorials/09-variational-inference/Manifest.toml @@ -25,9 +25,9 @@ version = "0.4.4" [[Accessors]] deps = ["Compat", "CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Requires", "StaticArrays", "Test"] -git-tree-sha1 = "f3d4132fa63a6c62ab19b5765daf87ce2d36076c" +git-tree-sha1 = "b9661b900b50ba475145b311a9a0ef9d2a9c85ea" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.25" +version = "0.1.26" [[Adapt]] deps = ["LinearAlgebra"] @@ -114,9 +114,9 @@ version = "0.4.6" [[BFloat16s]] deps = ["LinearAlgebra", "Printf", "Random", "Test"] -git-tree-sha1 = "a598ecb0d717092b5539dbbe890c98bac842b072" +git-tree-sha1 = "dbf84058d0a8cbbadee18d25cf606934b22d7c66" uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" -version = "0.2.0" +version = "0.4.2" [[BangBang]] deps = ["Compat", "ConstructionBase", "Future", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables", "ZygoteRules"] @@ -156,10 +156,34 @@ uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" version = "0.10.9" [[CUDA]] -deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "TimerOutputs"] -git-tree-sha1 = "6717cb9a3425ebb7b31ca4f832823615d175f64a" +deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions"] +git-tree-sha1 = "edff14c60784c8f7191a62a23b15a421185bc8a8" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "3.13.1" +version = "4.0.1" + +[[CUDA_Driver_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] +git-tree-sha1 = "75d7896d1ec079ef10d3aee8f3668c11354c03a1" +uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" +version = "0.2.0+0" + +[[CUDA_Runtime_Discovery]] +deps = ["Libdl"] +git-tree-sha1 = "58dd8ec29f54f08c04b052d2c2fa6760b4f4b3a4" +uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" +version = "0.1.1" + +[[CUDA_Runtime_jll]] +deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] +git-tree-sha1 = "d3e6ccd30f84936c1a3a53d622d85d7d3f9b9486" +uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" +version = "0.2.3+2" + +[[CUDNN_jll]] +deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] +git-tree-sha1 = "57011df4fce448828165e566af9befa2ea94350a" +uuid = "62b44479-cb7b-5706-934f-f13b2eb2e645" +version = "8.6.0+3" [[Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -181,9 +205,9 @@ version = "0.10.7" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -250,10 +274,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[Compat]] -deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] +git-tree-sha1 = "78bee250c6826e1cf805a88b7f1e86025275d208" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "3.46.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -304,10 +328,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.14.0" [[DataFrames]] -deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d4f69885afa5e6149d0cab3818491565cf41446d" +deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "db2a9cb664fcea7836da4b414c3278d71dd602d2" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.4.4" +version = "1.3.6" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] @@ -485,9 +509,9 @@ version = "0.8.4" [[Flux]] deps = ["Adapt", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "OneHotArrays", "Optimisers", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "Zygote"] -git-tree-sha1 = "518b553ec3776dde058aebd2750c109d04ee5593" +git-tree-sha1 = "c258e51850ac1fdc465f62380a61995d4a66d603" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.13.11" +version = "0.13.12" [[FoldsThreads]] deps = ["Accessors", "FunctionWrappers", "InitialValues", "SplittablesBase", "Transducers"] @@ -572,21 +596,21 @@ version = "0.1.3" [[GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "48832a7cacbe56e591a7bef690c78b9d00bcc692" +git-tree-sha1 = "95185985a5d2388c6d0fedb06181ad4ddd40e0cb" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.17.1" +version = "0.17.2" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -760,9 +784,9 @@ version = "3.0.0+1" [[LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "b8ae281340f0d3e973aae7b96fb7502b0119b376" +git-tree-sha1 = "df115c31f5c163697eede495918d8e85045c8f04" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "4.15.0" +version = "4.16.0" [[LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] @@ -887,9 +911,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -930,10 +954,10 @@ uuid = "d8e11817-5142-5d16-987a-aa16d5891078" version = "0.4.16" [[MLUtils]] -deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "FoldsThreads", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] -git-tree-sha1 = "266c67f773feb756474c2c4a7424ea5363290300" +deps = ["ChainRulesCore", "DataAPI", "DelimitedFiles", "FLoops", "FoldsThreads", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] +git-tree-sha1 = "82c1104919d664ab1024663ad851701415300c5f" uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.4.0" +version = "0.3.1" [[MacroTools]] deps = ["Markdown", "Random"] @@ -997,15 +1021,15 @@ version = "0.10.0" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NNlibCUDA]] -deps = ["Adapt", "CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics"] -git-tree-sha1 = "b05a082b08a3af0e5c576883bc6dfb6513e7e478" +deps = ["Adapt", "CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics", "cuDNN"] +git-tree-sha1 = "f94a9684394ff0d325cc12b06da7032d8be01aaf" uuid = "a00861dc-f156-4864-bf3c-e6376f28a68d" -version = "0.2.6" +version = "0.2.7" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -1057,10 +1081,10 @@ uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.5+1" [[OneHotArrays]] -deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] -git-tree-sha1 = "f511fca956ed9e70b80cd3417bb8c2dde4b68644" +deps = ["Adapt", "ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "MLUtils", "NNlib"] +git-tree-sha1 = "aee0130122fa7c1f3d394231376f07869f1e097c" uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" -version = "0.2.3" +version = "0.2.0" [[OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] @@ -1072,9 +1096,9 @@ uuid = "05823500-19ac-5b8b-9628-191a04bc5112" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1111,9 +1135,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1144,9 +1168,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1166,10 +1190,10 @@ uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" version = "0.2.0" [[PrettyTables]] -deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +deps = ["Crayons", "Formatting", "Markdown", "Reexport", "Tables"] +git-tree-sha1 = "dfb54c4e414caa595a1f2ed759b160f5a3ddcba5" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "1.3.1" [[Printf]] deps = ["Unicode"] @@ -1195,9 +1219,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1407,9 +1431,9 @@ version = "0.8.3" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1456,11 +1480,6 @@ git-tree-sha1 = "e0d5bc26226ab1b7648278169858adcfbd861780" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" version = "0.15.4" -[[StringManipulation]] -git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.0" - [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" @@ -1767,6 +1786,12 @@ git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" uuid = "700de1a5-db45-46bc-99cf-38207098b444" version = "0.2.2" +[[cuDNN]] +deps = ["CEnum", "CUDA", "CUDNN_jll"] +git-tree-sha1 = "c0ffcb38d1e8c0bbcd3dab2559cf9c369130b2f2" +uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" +version = "1.0.1" + [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml index 6e0fbe700..bc995b572 100644 --- a/tutorials/10-bayesian-differential-equations/Manifest.toml +++ b/tutorials/10-bayesian-differential-equations/Manifest.toml @@ -143,10 +143,10 @@ uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" version = "0.4.6" [[BandedMatrices]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b277f5d9737fde7b5dce7f43faf49c80f542806c" +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "SnoopPrecompile", "SparseArrays"] +git-tree-sha1 = "2787b3241b812828933ad5ce722bcbd3cdf23ced" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "0.17.10" +version = "0.17.11" [[BangBang]] deps = ["Compat", "ConstructionBase", "Future", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables", "ZygoteRules"] @@ -221,9 +221,9 @@ version = "0.3.11" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -387,21 +387,21 @@ version = "0.4.0" [[DiffEqBase]] deps = ["ArrayInterfaceCore", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "Static", "StaticArrays", "Statistics", "Tricks", "ZygoteRules"] -git-tree-sha1 = "1e0a1fde551d043af93996a52430c762b32d30c4" +git-tree-sha1 = "eb4002e64e33e49c1c5f36d9af7a867470821dca" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.114.2" +version = "6.115.4" [[DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "485503846a90b59f3b79b39c2d818496bf50d197" +git-tree-sha1 = "096c30c579557dd970546371d04707be1b280451" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.24.3" +version = "2.25.0" [[DiffEqNoiseProcess]] -deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArrays", "Statistics"] -git-tree-sha1 = "1a5c145ea1915b92e0d446c05e375f9c69c0348d" +deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArrays", "Statistics"] +git-tree-sha1 = "2c4ed3eedb87579bfe9f20ecc2440de06b9f3b89" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.15.2" +version = "5.16.0" [[DiffResults]] deps = ["StaticArraysCore"] @@ -484,9 +484,9 @@ version = "1.0.4" [[Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "Printf", "Random"] -git-tree-sha1 = "4806f20cb6c9b71546c3afa2c9fefc8190bfdc61" +git-tree-sha1 = "6249c3e023101edeb71e5c476c8945bd078e29e2" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.10.16" +version = "0.10.18" [[EnzymeCore]] deps = ["Adapt"] @@ -496,9 +496,9 @@ version = "0.1.0" [[Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "bb013ec867173e3a710005374455818eb04afb81" +git-tree-sha1 = "eeca6bf441fcd43a370777a6c3a2b5ae17434099" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.47+0" +version = "0.0.48+0" [[Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -507,10 +507,10 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExponentialUtilities]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceGPUArrays", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "Printf", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "9837d3f3a904c7a7ab9337759c0093d3abea1d81" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceGPUArrays", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "Printf", "SnoopPrecompile", "SparseArrays", "libblastrampoline_jll"] +git-tree-sha1 = "1c06afe6eb356a6148a2e5f07eddaf30f018bd5b" uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.22.0" +version = "1.22.1" [[ExprTools]] git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" @@ -647,21 +647,21 @@ version = "0.1.3" [[GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "48832a7cacbe56e591a7bef690c78b9d00bcc692" +git-tree-sha1 = "95185985a5d2388c6d0fedb06181ad4ddd40e0cb" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.17.1" +version = "0.17.2" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[GenericSchur]] deps = ["LinearAlgebra", "Printf"] @@ -689,9 +689,9 @@ version = "1.3.14+0" [[Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "ba2d094a88b6b287bd25cfa86f301e7693ffae2f" +git-tree-sha1 = "1cf1d7dcb4bc32d7b4a5add4232db3750c27ecb4" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.7.4" +version = "1.8.0" [[Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -876,9 +876,9 @@ version = "3.0.0+1" [[LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "b8ae281340f0d3e973aae7b96fb7502b0119b376" +git-tree-sha1 = "df115c31f5c163697eede495918d8e85045c8f04" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "4.15.0" +version = "4.16.0" [[LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] @@ -914,6 +914,12 @@ git-tree-sha1 = "0ad6f0c51ce004dadc24a28a0dfecfb568e52242" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" version = "0.1.13" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1014,10 +1020,10 @@ deps = ["Libdl"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[LinearSolve]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "FastLapackInterface", "GPUArraysCore", "IterativeSolvers", "KLU", "Krylov", "KrylovKit", "LinearAlgebra", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "Setfield", "SnoopPrecompile", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "960da8a80f9882fb52a5a199e944d3b86f0d2b94" +deps = ["ArrayInterfaceCore", "DocStringExtensions", "FastLapackInterface", "GPUArraysCore", "IterativeSolvers", "KLU", "Krylov", "KrylovKit", "LinearAlgebra", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SnoopPrecompile", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] +git-tree-sha1 = "ed97c2b4e46d02d4c866d3ccfae039a6c09568b1" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "1.34.1" +version = "1.35.0" [[LogDensityProblems]] deps = ["ArgCheck", "DocStringExtensions", "Random", "Requires", "UnPack"] @@ -1027,9 +1033,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -1041,10 +1047,10 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "0.4.9" [[LoopVectorization]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDDualNumbers", "SIMDTypes", "SLEEFPirates", "SnoopPrecompile", "SpecialFunctions", "Static", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "f127dff5c29692069c8ada8267864d252d417821" +deps = ["ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDTypes", "SLEEFPirates", "SnoopPrecompile", "SpecialFunctions", "Static", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "9696a80c21a56b937e3fd89e972f8db5db3186e2" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.149" +version = "0.12.150" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] @@ -1148,9 +1154,9 @@ version = "4.5.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -1223,9 +1229,9 @@ version = "1.3.3" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1258,9 +1264,9 @@ version = "1.4.1" [[OrdinaryDiffEq]] deps = ["Adapt", "ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceGPUArrays", "ArrayInterfaceStaticArrays", "ArrayInterfaceStaticArraysCore", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SimpleNonlinearSolve", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "f1f22e8a603a188ca76ae39a5f6caf560bd3d024" +git-tree-sha1 = "9e846d9c0f66fed04e7617a8bc380918a1ffe7ff" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.41.0" +version = "6.44.0" [[PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1280,9 +1286,9 @@ version = "0.12.3" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1313,9 +1319,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[PoissonRandom]] deps = ["Random"] @@ -1342,10 +1348,10 @@ uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" version = "0.2.4" [[PreallocationTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ForwardDiff"] -git-tree-sha1 = "758f3283aba57c53960c8e1900b4c724bf24ba74" +deps = ["Adapt", "ArrayInterfaceCore", "ForwardDiff", "Requires"] +git-tree-sha1 = "2c7658dd593e3adc118b00429e1048829f1abb8c" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.8" +version = "0.4.11" [[Preferences]] deps = ["TOML"] @@ -1383,9 +1389,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1437,10 +1443,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.37.0" [[RecursiveFactorization]] deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "SnoopPrecompile", "StrideArraysCore", "TriangularSolve"] @@ -1504,12 +1510,6 @@ version = "0.5.5" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -[[SIMDDualNumbers]] -deps = ["ForwardDiff", "IfElse", "SLEEFPirates", "VectorizationBase"] -git-tree-sha1 = "dd4195d308df24f33fb10dde7c22103ba88887fa" -uuid = "3cdde19b-5bb0-4aaf-8931-af3e248e098b" -version = "0.1.1" - [[SIMDTypes]] git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" uuid = "94e857df-77ce-4151-89e5-788b33177be4" @@ -1522,10 +1522,10 @@ uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" version = "0.6.38" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.84.0" [[SciMLNLSolve]] deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"] @@ -1533,11 +1533,17 @@ git-tree-sha1 = "66c7f901dbcad51791136e2d90ee67240256ecde" uuid = "e9a6253c-8580-4d32-9898-8661bb511710" version = "0.1.3" +[[SciMLOperators]] +deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.1.21" + [[SciMLSensitivity]] deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceTracker", "Cassette", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SimpleNonlinearSolve", "StaticArrays", "Statistics", "StochasticDiffEq", "Tracker", "Zygote", "ZygoteRules"] -git-tree-sha1 = "afb47752f1eb30c89fdcf8d7fd761e508c3ef43d" +git-tree-sha1 = "4279785280662e78c69548f1747181a65e7fa6ab" uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.19.0" +version = "7.20.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1582,9 +1588,9 @@ version = "1.1.0" [[SimpleNonlinearSolve]] deps = ["ArrayInterfaceCore", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "Reexport", "SciMLBase", "SnoopPrecompile", "StaticArraysCore"] -git-tree-sha1 = "9b941eeecd4f051f5656383fbebe7f7d0a89fc0d" +git-tree-sha1 = "3f558105e8ef4aac1e22bf30bd1f1e95698bfc95" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.9" +version = "0.1.10" [[SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -1619,9 +1625,9 @@ version = "1.30.0" [[Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] -git-tree-sha1 = "f9ca0222e4c0b7b1520298a0880e2f7101938831" +git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" -version = "0.3.7" +version = "0.3.9" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1643,9 +1649,9 @@ version = "0.8.3" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1694,15 +1700,15 @@ version = "1.11.0" [[StochasticDiffEq]] deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "c35d43a21e91fd53ebe31bd6a3d81745e1c8fca0" +git-tree-sha1 = "bd850e7f02936a2af7b3609042e1ac14d86d0471" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.57.4" +version = "6.57.5" [[StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "ThreadingUtilities"] -git-tree-sha1 = "45190b743cdc6f761da1e079bb15ff103a89069c" +git-tree-sha1 = "8114ba9c3694827838d45ea3c9f6b9ccb4182cf2" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.4.6" +version = "0.4.7" [[StringManipulation]] git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" @@ -1731,9 +1737,9 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" [[Sundials]] deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "Reexport", "SciMLBase", "SnoopPrecompile", "SparseArrays", "Sundials_jll"] -git-tree-sha1 = "3b96c84832be31fce33de760a2cd5f4fdc050c23" +git-tree-sha1 = "e93060234ee07225fdb9f1c61f90b4595f8c5fa6" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "4.13.0" +version = "4.15.0" [[Sundials_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "OpenBLAS_jll", "Pkg", "SuiteSparse_jll"] diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml index 659e922c3..b21e48c9a 100644 --- a/tutorials/11-probabilistic-pca/Manifest.toml +++ b/tutorials/11-probabilistic-pca/Manifest.toml @@ -145,9 +145,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -476,15 +476,15 @@ version = "0.1.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -661,6 +661,12 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -756,9 +762,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -849,9 +855,9 @@ version = "0.10.0" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -912,9 +918,9 @@ version = "1.3.3" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -951,9 +957,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -984,9 +990,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1030,9 +1036,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1072,10 +1078,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.37.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1128,10 +1134,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.84.0" + +[[SciMLOperators]] +deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.1.21" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1207,9 +1219,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1331,6 +1343,11 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/12-gaussian-process/Manifest.toml b/tutorials/12-gaussian-process/Manifest.toml index 7c6095aef..905416923 100644 --- a/tutorials/12-gaussian-process/Manifest.toml +++ b/tutorials/12-gaussian-process/Manifest.toml @@ -146,9 +146,9 @@ version = "0.10.7" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -477,15 +477,15 @@ version = "0.1.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -674,6 +674,12 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -769,9 +775,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -862,9 +868,9 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -904,9 +910,9 @@ uuid = "05823500-19ac-5b8b-9628-191a04bc5112" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -943,9 +949,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -976,9 +982,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1022,9 +1028,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1076,10 +1082,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.37.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1132,10 +1138,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.84.0" + +[[SciMLOperators]] +deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.1.21" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1206,9 +1218,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1324,6 +1336,11 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml index 4476e5a46..54d734425 100644 --- a/tutorials/13-seasonal-time-series/Manifest.toml +++ b/tutorials/13-seasonal-time-series/Manifest.toml @@ -145,9 +145,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -470,15 +470,15 @@ version = "0.1.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -655,6 +655,12 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -750,9 +756,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -843,9 +849,9 @@ version = "0.10.0" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -906,9 +912,9 @@ version = "1.3.3" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +951,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -978,9 +984,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[Preferences]] deps = ["TOML"] @@ -1018,9 +1024,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1060,10 +1066,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.37.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1110,10 +1116,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.84.0" + +[[SciMLOperators]] +deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.1.21" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1189,9 +1201,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1313,6 +1325,11 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml index d2d65eb89..b75e5f19f 100644 --- a/tutorials/14-minituring/Manifest.toml +++ b/tutorials/14-minituring/Manifest.toml @@ -116,9 +116,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -295,9 +295,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "deed294cde3de20ae0b2e0355a6c4e1c6a5ceffc" +git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.12.8" +version = "0.13.7" [[Formatting]] deps = ["Printf"] @@ -478,9 +478,9 @@ version = "2.1.0" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -554,9 +554,9 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -645,9 +645,9 @@ version = "1.7.2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -781,9 +781,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml index 4476e5a46..54d734425 100644 --- a/tutorials/docs-00-getting-started/Manifest.toml +++ b/tutorials/docs-00-getting-started/Manifest.toml @@ -145,9 +145,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" +git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.1" +version = "1.47.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -470,15 +470,15 @@ version = "0.1.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "9e23bd6bb3eb4300cb567bdf63e2c14e5d2ffdbc" +git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.5" +version = "0.71.6" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "aa23c9f9b7c0ba6baeabe966ea1c7d2c7487ef90" +git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.5+0" +version = "0.71.6+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -655,6 +655,12 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -750,9 +756,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "45b288af6956e67e621c5cbb2d75a261ab58300b" +git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.20" +version = "0.3.21" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -843,9 +849,9 @@ version = "0.10.0" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "b488fc28dfae4c8ec3d61a34a0143a4245e7b13b" +git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.16" +version = "0.8.17" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -906,9 +912,9 @@ version = "1.3.3" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004" +git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.19+0" +version = "1.1.20+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +951,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "151d91d63d8d6c1a5789ecb7de51547e00480f1b" +git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.4" +version = "2.5.6" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -978,9 +984,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "87036ff7d1277aa624ce4d211ddd8720116f80bf" +git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.4" +version = "1.38.5" [[Preferences]] deps = ["TOML"] @@ -1018,9 +1024,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "de191bc385072cc6c7ed3ffdc1caeed3f22c74d4" +git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.7.0" +version = "2.8.1" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1060,10 +1066,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "f311e004143b4dc7c5492a2e9b9a1d945058fd8c" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.36.0" +version = "2.37.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1110,10 +1116,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c4e3c4bb8544b2f0bc537baa44925b6b39a8c383" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.1" +version = "1.84.0" + +[[SciMLOperators]] +deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.1.21" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1189,9 +1201,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6954a456979f23d05085727adb17c4551c19ecd1" +git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.12" +version = "1.5.14" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1313,6 +1325,11 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" From 0a4dfa55ed335c38a8df18b07ef337cda3dfdff1 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Sat, 18 Feb 2023 14:14:50 +0100 Subject: [PATCH 3/7] Update manifest files (#384) Co-authored-by: yebai --- tutorials/00-introduction/Manifest.toml | 56 +++++----- .../01-gaussian-mixture-model/Manifest.toml | 56 +++++----- .../02-logistic-regression/Manifest.toml | 62 +++++------ .../03-bayesian-neural-network/Manifest.toml | 60 +++++------ .../04-hidden-markov-model/Manifest.toml | 56 +++++----- tutorials/05-linear-regression/Manifest.toml | 70 ++++++------ .../06-infinite-mixture-model/Manifest.toml | 52 ++++----- tutorials/07-poisson-regression/Manifest.toml | 62 +++++------ .../Manifest.toml | 62 +++++------ .../09-variational-inference/Manifest.toml | 60 +++++------ .../Manifest.toml | 102 +++++++++--------- tutorials/11-probabilistic-pca/Manifest.toml | 68 ++++++------ tutorials/12-gaussian-process/Manifest.toml | 54 +++++----- .../13-seasonal-time-series/Manifest.toml | 56 +++++----- tutorials/14-minituring/Manifest.toml | 24 ++--- .../docs-00-getting-started/Manifest.toml | 56 +++++----- 16 files changed, 481 insertions(+), 475 deletions(-) diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml index 54d734425..df7f1c577 100644 --- a/tutorials/00-introduction/Manifest.toml +++ b/tutorials/00-introduction/Manifest.toml @@ -442,9 +442,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -464,21 +464,21 @@ version = "3.3.8+0" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -523,9 +523,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -843,21 +843,21 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "efe9c8ecab7a6311d4b91568bd6c88897822fabe" +git-tree-sha1 = "91a48569383df24f0fd2baf789df2aade3d0ad80" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.0" +version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] @@ -951,9 +951,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1117,9 +1117,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" +git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.0" +version = "1.84.1" [[SciMLOperators]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1201,9 +1201,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1337,9 +1337,9 @@ uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" [[URIs]] -git-tree-sha1 = "ac00576f90d8a259f2c9d823e91d1de3fd44d348" +git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.1" +version = "1.4.2" [[UUIDs]] deps = ["Random", "SHA"] @@ -1531,10 +1531,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml index 54d734425..df7f1c577 100644 --- a/tutorials/01-gaussian-mixture-model/Manifest.toml +++ b/tutorials/01-gaussian-mixture-model/Manifest.toml @@ -442,9 +442,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -464,21 +464,21 @@ version = "3.3.8+0" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -523,9 +523,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -843,21 +843,21 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "efe9c8ecab7a6311d4b91568bd6c88897822fabe" +git-tree-sha1 = "91a48569383df24f0fd2baf789df2aade3d0ad80" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.0" +version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] @@ -951,9 +951,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1117,9 +1117,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" +git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.0" +version = "1.84.1" [[SciMLOperators]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1201,9 +1201,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1337,9 +1337,9 @@ uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" [[URIs]] -git-tree-sha1 = "ac00576f90d8a259f2c9d823e91d1de3fd44d348" +git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.1" +version = "1.4.2" [[UUIDs]] deps = ["Random", "SHA"] @@ -1531,10 +1531,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml index 0413b2a08..d73f71147 100644 --- a/tutorials/02-logistic-regression/Manifest.toml +++ b/tutorials/02-logistic-regression/Manifest.toml @@ -268,10 +268,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.14.0" [[DataFrames]] -deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d4f69885afa5e6149d0cab3818491565cf41446d" +deps = ["Compat", "DataAPI", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "aa51303df86f8626a962fccb878430cdb0a97eee" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.4.4" +version = "1.5.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] @@ -472,9 +472,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -500,21 +500,21 @@ version = "1.8.1" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -559,9 +559,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -915,21 +915,21 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "efe9c8ecab7a6311d4b91568bd6c88897822fabe" +git-tree-sha1 = "91a48569383df24f0fd2baf789df2aade3d0ad80" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.0" +version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] @@ -1023,9 +1023,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1207,9 +1207,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" +git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.0" +version = "1.84.1" [[SciMLOperators]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1296,9 +1296,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1444,9 +1444,9 @@ uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" [[URIs]] -git-tree-sha1 = "ac00576f90d8a259f2c9d823e91d1de3fd44d348" +git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.1" +version = "1.4.2" [[UUIDs]] deps = ["Random", "SHA"] @@ -1649,10 +1649,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml index e68b59ebc..6e58d62ea 100644 --- a/tutorials/03-bayesian-neural-network/Manifest.toml +++ b/tutorials/03-bayesian-neural-network/Manifest.toml @@ -478,9 +478,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -500,15 +500,15 @@ version = "3.3.8+0" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "4dfaff044eb2ce11a897fecd85538310e60b91e6" +git-tree-sha1 = "a28f752ffab0ccd6660fc7af5ad1c9ad176f45f7" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.6.2" +version = "8.6.3" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] @@ -518,15 +518,15 @@ version = "0.17.2" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -571,9 +571,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -860,15 +860,15 @@ uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" version = "1.8.0" [[MLStyle]] -git-tree-sha1 = "060ef7956fef2dc06b0e63b294f7dbfbcbdc7ea2" +git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" uuid = "d8e11817-5142-5d16-987a-aa16d5891078" -version = "0.4.16" +version = "0.4.17" [[MLUtils]] deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "FoldsThreads", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] -git-tree-sha1 = "266c67f773feb756474c2c4a7424ea5363290300" +git-tree-sha1 = "f69cdbb5b7c630c02481d81d50eac43697084fe0" uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.4.0" +version = "0.4.1" [[MacroTools]] deps = ["Markdown", "Random"] @@ -920,9 +920,9 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NNlibCUDA]] deps = ["Adapt", "CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics", "cuDNN"] @@ -932,9 +932,9 @@ version = "0.2.7" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NameResolution]] deps = ["PrettyPrint"] @@ -1019,9 +1019,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1208,9 +1208,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" +git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.0" +version = "1.84.1" [[SciMLOperators]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1292,9 +1292,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1599,10 +1599,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml index 54d734425..df7f1c577 100644 --- a/tutorials/04-hidden-markov-model/Manifest.toml +++ b/tutorials/04-hidden-markov-model/Manifest.toml @@ -442,9 +442,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -464,21 +464,21 @@ version = "3.3.8+0" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -523,9 +523,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -843,21 +843,21 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "efe9c8ecab7a6311d4b91568bd6c88897822fabe" +git-tree-sha1 = "91a48569383df24f0fd2baf789df2aade3d0ad80" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.0" +version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] @@ -951,9 +951,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1117,9 +1117,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" +git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.0" +version = "1.84.1" [[SciMLOperators]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1201,9 +1201,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1337,9 +1337,9 @@ uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" [[URIs]] -git-tree-sha1 = "ac00576f90d8a259f2c9d823e91d1de3fd44d348" +git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.1" +version = "1.4.2" [[UUIDs]] deps = ["Random", "SHA"] @@ -1531,10 +1531,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml index 1fa574950..90da61733 100644 --- a/tutorials/05-linear-regression/Manifest.toml +++ b/tutorials/05-linear-regression/Manifest.toml @@ -280,10 +280,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.14.0" [[DataFrames]] -deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d4f69885afa5e6149d0cab3818491565cf41446d" +deps = ["Compat", "DataAPI", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "aa51303df86f8626a962fccb878430cdb0a97eee" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.4.4" +version = "1.5.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] @@ -502,9 +502,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -530,21 +530,21 @@ version = "1.8.1" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -589,9 +589,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -872,15 +872,15 @@ uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" version = "1.8.0" [[MLStyle]] -git-tree-sha1 = "060ef7956fef2dc06b0e63b294f7dbfbcbdc7ea2" +git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" uuid = "d8e11817-5142-5d16-987a-aa16d5891078" -version = "0.4.16" +version = "0.4.17" [[MLUtils]] deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "FoldsThreads", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] -git-tree-sha1 = "266c67f773feb756474c2c4a7424ea5363290300" +git-tree-sha1 = "f69cdbb5b7c630c02481d81d50eac43697084fe0" uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.4.0" +version = "0.4.1" [[MacroTools]] deps = ["Markdown", "Random"] @@ -938,21 +938,21 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "efe9c8ecab7a6311d4b91568bd6c88897822fabe" +git-tree-sha1 = "91a48569383df24f0fd2baf789df2aade3d0ad80" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.0" +version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NameResolution]] deps = ["PrettyPrint"] @@ -1052,9 +1052,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1241,9 +1241,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" +git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.0" +version = "1.84.1" [[SciMLOperators]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1341,9 +1341,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1489,9 +1489,9 @@ uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" [[URIs]] -git-tree-sha1 = "ac00576f90d8a259f2c9d823e91d1de3fd44d348" +git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.1" +version = "1.4.2" [[UUIDs]] deps = ["Random", "SHA"] @@ -1694,10 +1694,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml index 32de7ba92..cc60fff52 100644 --- a/tutorials/06-infinite-mixture-model/Manifest.toml +++ b/tutorials/06-infinite-mixture-model/Manifest.toml @@ -412,9 +412,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -434,21 +434,21 @@ version = "3.3.8+0" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -493,9 +493,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -813,15 +813,15 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] @@ -900,9 +900,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1066,9 +1066,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" +git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.0" +version = "1.84.1" [[SciMLOperators]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1144,9 +1144,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1268,9 +1268,9 @@ uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" [[URIs]] -git-tree-sha1 = "ac00576f90d8a259f2c9d823e91d1de3fd44d348" +git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.1" +version = "1.4.2" [[UUIDs]] deps = ["Random", "SHA"] @@ -1456,10 +1456,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml index 0413b2a08..d73f71147 100644 --- a/tutorials/07-poisson-regression/Manifest.toml +++ b/tutorials/07-poisson-regression/Manifest.toml @@ -268,10 +268,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.14.0" [[DataFrames]] -deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d4f69885afa5e6149d0cab3818491565cf41446d" +deps = ["Compat", "DataAPI", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "aa51303df86f8626a962fccb878430cdb0a97eee" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.4.4" +version = "1.5.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] @@ -472,9 +472,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -500,21 +500,21 @@ version = "1.8.1" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -559,9 +559,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -915,21 +915,21 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "efe9c8ecab7a6311d4b91568bd6c88897822fabe" +git-tree-sha1 = "91a48569383df24f0fd2baf789df2aade3d0ad80" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.0" +version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] @@ -1023,9 +1023,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1207,9 +1207,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" +git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.0" +version = "1.84.1" [[SciMLOperators]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1296,9 +1296,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1444,9 +1444,9 @@ uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" [[URIs]] -git-tree-sha1 = "ac00576f90d8a259f2c9d823e91d1de3fd44d348" +git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.1" +version = "1.4.2" [[UUIDs]] deps = ["Random", "SHA"] @@ -1649,10 +1649,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml index ffed70fba..d48d539bd 100644 --- a/tutorials/08-multinomial-logistic-regression/Manifest.toml +++ b/tutorials/08-multinomial-logistic-regression/Manifest.toml @@ -268,10 +268,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.14.0" [[DataFrames]] -deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d4f69885afa5e6149d0cab3818491565cf41446d" +deps = ["Compat", "DataAPI", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "aa51303df86f8626a962fccb878430cdb0a97eee" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.4.4" +version = "1.5.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] @@ -472,9 +472,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -494,21 +494,21 @@ version = "3.3.8+0" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -553,9 +553,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -909,21 +909,21 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "efe9c8ecab7a6311d4b91568bd6c88897822fabe" +git-tree-sha1 = "91a48569383df24f0fd2baf789df2aade3d0ad80" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.0" +version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] @@ -1017,9 +1017,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1201,9 +1201,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" +git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.0" +version = "1.84.1" [[SciMLOperators]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1285,9 +1285,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1427,9 +1427,9 @@ uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" [[URIs]] -git-tree-sha1 = "ac00576f90d8a259f2c9d823e91d1de3fd44d348" +git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.1" +version = "1.4.2" [[UUIDs]] deps = ["Random", "SHA"] @@ -1632,10 +1632,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml index 90d7913eb..b1296c36b 100644 --- a/tutorials/09-variational-inference/Manifest.toml +++ b/tutorials/09-variational-inference/Manifest.toml @@ -285,9 +285,9 @@ uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" [[ComponentArrays]] deps = ["ArrayInterface", "ChainRulesCore", "LinearAlgebra", "Requires"] -git-tree-sha1 = "73fd67f0e4820bdae17e14b4e092dde542f57aab" +git-tree-sha1 = "95657fa9fdb20ecb1a0c9b43dc05deeba622b3de" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.13.6" +version = "0.13.7" [[CompositionsBase]] git-tree-sha1 = "455419f7e328a1a2493cabc6428d79e951349769" @@ -556,9 +556,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -584,15 +584,15 @@ version = "1.8.1" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "4dfaff044eb2ce11a897fecd85538310e60b91e6" +git-tree-sha1 = "a28f752ffab0ccd6660fc7af5ad1c9ad176f45f7" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.6.2" +version = "8.6.3" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] @@ -602,15 +602,15 @@ version = "0.17.2" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -655,9 +655,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -949,9 +949,9 @@ uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" version = "1.8.0" [[MLStyle]] -git-tree-sha1 = "060ef7956fef2dc06b0e63b294f7dbfbcbdc7ea2" +git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" uuid = "d8e11817-5142-5d16-987a-aa16d5891078" -version = "0.4.16" +version = "0.4.17" [[MLUtils]] deps = ["ChainRulesCore", "DataAPI", "DelimitedFiles", "FLoops", "FoldsThreads", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] @@ -1015,15 +1015,15 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "efe9c8ecab7a6311d4b91568bd6c88897822fabe" +git-tree-sha1 = "91a48569383df24f0fd2baf789df2aade3d0ad80" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.0" +version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NNlibCUDA]] deps = ["Adapt", "CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics", "cuDNN"] @@ -1033,9 +1033,9 @@ version = "0.2.7" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NameResolution]] deps = ["PrettyPrint"] @@ -1135,9 +1135,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1431,9 +1431,9 @@ version = "0.8.3" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1769,10 +1769,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml index bc995b572..b189f5f6e 100644 --- a/tutorials/10-bayesian-differential-equations/Manifest.toml +++ b/tutorials/10-bayesian-differential-equations/Manifest.toml @@ -144,9 +144,9 @@ version = "0.4.6" [[BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "SnoopPrecompile", "SparseArrays"] -git-tree-sha1 = "2787b3241b812828933ad5ce722bcbd3cdf23ced" +git-tree-sha1 = "8b0a59f488eb3aceccffa341beeeca9957867919" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "0.17.11" +version = "0.17.14" [[BangBang]] deps = ["Compat", "ConstructionBase", "Future", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables", "ZygoteRules"] @@ -371,9 +371,9 @@ version = "0.1.2" [[DelayDiffEq]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "UnPack"] -git-tree-sha1 = "d94e9902cf38131d596a7644b8aa128cf172d9a1" +git-tree-sha1 = "2954c361da6ff0bbd1d95ed4d549b649eea919ca" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.40.6" +version = "5.40.7" [[DelimitedFiles]] deps = ["Mmap"] @@ -387,15 +387,15 @@ version = "0.4.0" [[DiffEqBase]] deps = ["ArrayInterfaceCore", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "Static", "StaticArrays", "Statistics", "Tricks", "ZygoteRules"] -git-tree-sha1 = "eb4002e64e33e49c1c5f36d9af7a867470821dca" +git-tree-sha1 = "b91fef836ef8c2c4480bce90bb8981e1ac21b444" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.115.4" +version = "6.117.0" [[DiffEqCallbacks]] -deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "096c30c579557dd970546371d04707be1b280451" +deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "b497f63a13fe37e03ed7ac72d71b72aad17b46c4" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.25.0" +version = "2.26.0" [[DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArrays", "Statistics"] @@ -416,10 +416,10 @@ uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.12.2" [[DifferentialEquations]] -deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"] -git-tree-sha1 = "418dad2cfd7377a474326bc86a23cb645fac6527" +deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"] +git-tree-sha1 = "ac145e3d718157c679fc4febf2fcef73ec77b067" uuid = "0c46a032-eb83-5123-abaf-570d42b7fbaa" -version = "7.6.0" +version = "7.7.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -496,9 +496,9 @@ version = "0.1.0" [[Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "eeca6bf441fcd43a370777a6c3a2b5ae17434099" +git-tree-sha1 = "ab56cf1c49ca27bce4e4f7cc91889cedfe83bd03" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.48+0" +version = "0.0.48+1" [[Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -613,9 +613,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -635,15 +635,15 @@ version = "3.3.8+0" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "4dfaff044eb2ce11a897fecd85538310e60b91e6" +git-tree-sha1 = "a28f752ffab0ccd6660fc7af5ad1c9ad176f45f7" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.6.2" +version = "8.6.3" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] @@ -653,15 +653,15 @@ version = "0.17.2" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[GenericSchur]] deps = ["LinearAlgebra", "Printf"] @@ -724,9 +724,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -1136,9 +1136,9 @@ version = "0.2.4" [[MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "efe9c8ecab7a6311d4b91568bd6c88897822fabe" +git-tree-sha1 = "91a48569383df24f0fd2baf789df2aade3d0ad80" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.0" +version = "0.10.1" [[NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1154,15 +1154,15 @@ version = "4.5.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] @@ -1286,9 +1286,9 @@ version = "0.12.3" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1450,9 +1450,9 @@ version = "2.37.0" [[RecursiveFactorization]] deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "SnoopPrecompile", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "315b2c85818eea6ad1b6b84fd4ecb40cd4146665" +git-tree-sha1 = "9088515ad915c99026beb5436d0a09cd8c18163e" uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.17" +version = "0.2.18" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1523,9 +1523,9 @@ version = "0.6.38" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" +git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.0" +version = "1.84.1" [[SciMLNLSolve]] deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"] @@ -1649,9 +1649,9 @@ version = "0.8.3" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1693,10 +1693,10 @@ uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" version = "0.15.4" [[SteadyStateDiffEq]] -deps = ["DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "NLsolve", "Reexport", "SciMLBase"] -git-tree-sha1 = "32d8ad240e065b5c86088c759670cb6bcc96e45a" +deps = ["DiffEqBase", "DiffEqCallbacks", "EnumX", "LinearAlgebra", "Markdown", "NLsolve", "Reexport", "SciMLBase"] +git-tree-sha1 = "a0cdb38cc0207213a95aa6caa40b3c94ab323f05" uuid = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f" -version = "1.11.0" +version = "1.12.0" [[StochasticDiffEq]] deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] @@ -1737,9 +1737,9 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" [[Sundials]] deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "Reexport", "SciMLBase", "SnoopPrecompile", "SparseArrays", "Sundials_jll"] -git-tree-sha1 = "e93060234ee07225fdb9f1c61f90b4595f8c5fa6" +git-tree-sha1 = "c033830e3c6fb4260243fc907b1e7e93421e7ae8" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "4.15.0" +version = "4.15.1" [[Sundials_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "OpenBLAS_jll", "Pkg", "SuiteSparse_jll"] @@ -1849,9 +1849,9 @@ uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" [[URIs]] -git-tree-sha1 = "ac00576f90d8a259f2c9d823e91d1de3fd44d348" +git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.1" +version = "1.4.2" [[UUIDs]] deps = ["Random", "SHA"] @@ -2055,10 +2055,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml index b21e48c9a..3bb64c1de 100644 --- a/tutorials/11-probabilistic-pca/Manifest.toml +++ b/tutorials/11-probabilistic-pca/Manifest.toml @@ -256,10 +256,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.14.0" [[DataFrames]] -deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d4f69885afa5e6149d0cab3818491565cf41446d" +deps = ["Compat", "DataAPI", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "aa51303df86f8626a962fccb878430cdb0a97eee" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.4.4" +version = "1.5.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] @@ -448,9 +448,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -470,21 +470,21 @@ version = "3.3.8+0" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -529,9 +529,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -543,6 +543,12 @@ git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" version = "0.3.1" +[[InlineStrings]] +deps = ["Parsers"] +git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" +version = "1.4.0" + [[InplaceOps]] deps = ["LinearAlgebra", "Test"] git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" @@ -849,21 +855,21 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "efe9c8ecab7a6311d4b91568bd6c88897822fabe" +git-tree-sha1 = "91a48569383df24f0fd2baf789df2aade3d0ad80" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.0" +version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] @@ -957,9 +963,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1135,9 +1141,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" +git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.0" +version = "1.84.1" [[SciMLOperators]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1219,9 +1225,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1355,9 +1361,9 @@ uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" [[URIs]] -git-tree-sha1 = "ac00576f90d8a259f2c9d823e91d1de3fd44d348" +git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.1" +version = "1.4.2" [[UUIDs]] deps = ["Random", "SHA"] @@ -1549,10 +1555,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/12-gaussian-process/Manifest.toml b/tutorials/12-gaussian-process/Manifest.toml index 905416923..385139edf 100644 --- a/tutorials/12-gaussian-process/Manifest.toml +++ b/tutorials/12-gaussian-process/Manifest.toml @@ -251,10 +251,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.14.0" [[DataFrames]] -deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d4f69885afa5e6149d0cab3818491565cf41446d" +deps = ["Compat", "DataAPI", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "aa51303df86f8626a962fccb878430cdb0a97eee" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.4.4" +version = "1.5.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] @@ -449,9 +449,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -471,21 +471,21 @@ version = "3.3.8+0" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -530,9 +530,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -868,15 +868,15 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] @@ -949,9 +949,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1139,9 +1139,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" +git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.0" +version = "1.84.1" [[SciMLOperators]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1218,9 +1218,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1537,10 +1537,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml index 54d734425..df7f1c577 100644 --- a/tutorials/13-seasonal-time-series/Manifest.toml +++ b/tutorials/13-seasonal-time-series/Manifest.toml @@ -442,9 +442,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -464,21 +464,21 @@ version = "3.3.8+0" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -523,9 +523,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -843,21 +843,21 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "efe9c8ecab7a6311d4b91568bd6c88897822fabe" +git-tree-sha1 = "91a48569383df24f0fd2baf789df2aade3d0ad80" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.0" +version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] @@ -951,9 +951,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1117,9 +1117,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" +git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.0" +version = "1.84.1" [[SciMLOperators]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1201,9 +1201,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1337,9 +1337,9 @@ uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" [[URIs]] -git-tree-sha1 = "ac00576f90d8a259f2c9d823e91d1de3fd44d348" +git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.1" +version = "1.4.2" [[UUIDs]] deps = ["Random", "SHA"] @@ -1531,10 +1531,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml index b75e5f19f..a7420f568 100644 --- a/tutorials/14-minituring/Manifest.toml +++ b/tutorials/14-minituring/Manifest.toml @@ -318,9 +318,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -334,9 +334,9 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[HypergeometricFunctions]] deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions", "Test"] @@ -346,9 +346,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[InitialValues]] git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" @@ -554,15 +554,15 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] @@ -781,9 +781,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml index 54d734425..df7f1c577 100644 --- a/tutorials/docs-00-getting-started/Manifest.toml +++ b/tutorials/docs-00-getting-started/Manifest.toml @@ -442,9 +442,9 @@ version = "1.1.3" [[FunctionWrappersWrappers]] deps = ["FunctionWrappers"] -git-tree-sha1 = "a5e6e7f12607e90d71b09e6ce2c965e41b337968" +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.1" +version = "0.1.3" [[Functors]] deps = ["LinearAlgebra"] @@ -464,21 +464,21 @@ version = "3.3.8+0" [[GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "57f7cde02d7a53c9d1d28443b9f11ac5fbe7ebc9" +git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.3" +version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "350c974a2fc6c73792cc337be3ea6a37e5fe5f44" +git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.6" +version = "0.71.7" [[GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b23a8733e5b294a49351b419cb54ff4e5279c330" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.6+0" +version = "0.71.7+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -523,9 +523,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2e99184fca5eb6f075944b04c22edec29beb4778" +git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.7" +version = "0.4.8" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -843,21 +843,21 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "efe9c8ecab7a6311d4b91568bd6c88897822fabe" +git-tree-sha1 = "91a48569383df24f0fd2baf789df2aade3d0ad80" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.0" +version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e69bf048c892296a45083f0abab02ee8cffe1378" +git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.17" +version = "0.8.18" [[NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "a7c3d1da1189a1c2fe843a3bfa04d18d20eb3211" +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.1" +version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] @@ -951,9 +951,9 @@ version = "0.11.16" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "946b56b2135c6c10bbb93efad8a78b699b6383ab" +git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.6" +version = "2.5.7" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1117,9 +1117,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c204bd2e918467bd6cbeea961850ae260e7a5050" +git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.0" +version = "1.84.1" [[SciMLOperators]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1201,9 +1201,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "cee507162ecbb677450f20058ca83bd559b6b752" +git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.14" +version = "1.5.15" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1337,9 +1337,9 @@ uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" [[URIs]] -git-tree-sha1 = "ac00576f90d8a259f2c9d823e91d1de3fd44d348" +git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.1" +version = "1.4.2" [[UUIDs]] deps = ["Random", "SHA"] @@ -1531,10 +1531,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.4+0" [[ZygoteRules]] deps = ["MacroTools"] From aeb10f58fb178ef37d716b695bb9aea91c127187 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Sat, 4 Mar 2023 10:30:22 +0000 Subject: [PATCH 4/7] Update manifest files (#385) Co-authored-by: yebai --- tutorials/00-introduction/Manifest.toml | 178 ++++------ .../01-gaussian-mixture-model/Manifest.toml | 134 ++++---- .../02-logistic-regression/Manifest.toml | 166 ++++------ .../03-bayesian-neural-network/Manifest.toml | 142 ++++---- .../04-hidden-markov-model/Manifest.toml | 134 ++++---- tutorials/05-linear-regression/Manifest.toml | 138 ++++---- .../06-infinite-mixture-model/Manifest.toml | 130 ++++---- tutorials/07-poisson-regression/Manifest.toml | 166 ++++------ .../Manifest.toml | 134 ++++---- .../09-variational-inference/Manifest.toml | 159 ++++----- .../Manifest.toml | 304 ++++++++---------- tutorials/11-probabilistic-pca/Manifest.toml | 134 ++++---- tutorials/12-gaussian-process/Manifest.toml | 153 ++++----- .../13-seasonal-time-series/Manifest.toml | 134 ++++---- tutorials/14-minituring/Manifest.toml | 86 ++--- .../docs-00-getting-started/Manifest.toml | 134 ++++---- 16 files changed, 1152 insertions(+), 1274 deletions(-) diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml index df7f1c577..a09b1d579 100644 --- a/tutorials/00-introduction/Manifest.toml +++ b/tutorials/00-introduction/Manifest.toml @@ -14,9 +14,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -24,10 +24,10 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -73,6 +73,12 @@ git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" +[[ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.2.0" + [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" @@ -116,14 +122,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" - -[[BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.10.7" [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -145,9 +146,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -157,9 +158,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] @@ -167,12 +168,6 @@ git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" version = "0.14.3" -[[CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "9c209fb7536406834aa938fb149964b985de6c83" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.1" - [[ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "Random", "SnoopPrecompile"] git-tree-sha1 = "aa3edc8f8dea6cbfa176ee12f7c2fc82f0608ed3" @@ -236,9 +231,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -299,9 +294,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -315,9 +310,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -327,9 +322,9 @@ version = "0.6.43" [[DocStringExtensions]] deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "b19534d1895d702889b219c382a6e18010797f0b" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.8.6" [[Downloads]] deps = ["ArgTools", "LibCURL", "NetworkOptions"] @@ -348,10 +343,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -395,9 +390,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "deed294cde3de20ae0b2e0355a6c4e1c6a5ceffc" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.12.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -419,9 +414,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -504,10 +499,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "37e4657cd56b11abe3d10cd4a1ec5fbdb4180263" +deps = ["Base64", "Dates", "IniFile", "MbedTLS", "Sockets"] +git-tree-sha1 = "c7ec02c4c6a039a98a15f955462cd7aea5df4508" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.7.4" +version = "0.8.19" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -610,10 +605,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -655,12 +650,6 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" -[[Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -756,9 +745,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -849,9 +838,9 @@ version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -904,12 +893,6 @@ uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -[[OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "6503b77492fd7fcb9379bf73cd31035670e3c509" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.3.3" - [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" @@ -924,9 +907,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +928,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] @@ -984,9 +967,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[Preferences]] deps = ["TOML"] @@ -1066,10 +1049,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "Tables", "ZygoteRules"] +git-tree-sha1 = "a5ce741acddc02f0d4fc6505463ca89697d7fb23" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.37.0" +version = "2.32.3" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1102,9 +1085,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1116,16 +1099,10 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "Tables"] +git-tree-sha1 = "fe89a8113ea445bcff9ee570077830674babb534" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.1" - -[[SciMLOperators]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.21" +version = "1.81.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1140,9 +1117,9 @@ version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "c02bd3c9c3fc8463d3591a62a378f90d2d8ab0f3" +git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.17" +version = "1.3.18" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1163,11 +1140,6 @@ git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" version = "1.0.3" -[[SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - [[SnoopPrecompile]] deps = ["Preferences"] git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" @@ -1189,9 +1161,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1201,9 +1173,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1234,9 +1206,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] @@ -1259,12 +1231,6 @@ version = "0.6.14" deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" -[[SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" - [[TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" @@ -1313,34 +1279,18 @@ git-tree-sha1 = "77817887c4b414b9c6914c61273910e3234eb21c" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" version = "0.2.23" -[[TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "94f38103c984f89cf77c402f2a68dbd870f8165f" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.11" - [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" -[[Tricks]] -git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.6" - [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" -[[URIs]] -git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.2" - [[UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml index df7f1c577..6d046d3c7 100644 --- a/tutorials/01-gaussian-mixture-model/Manifest.toml +++ b/tutorials/01-gaussian-mixture-model/Manifest.toml @@ -14,9 +14,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -24,10 +24,10 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -73,17 +73,11 @@ git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" -[[ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - -[[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" -uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +[[ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.2.0" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -116,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" +version = "0.10.7" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -145,9 +139,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -157,9 +151,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] @@ -236,9 +230,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -299,9 +293,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -315,9 +309,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -348,10 +342,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -419,9 +413,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -610,10 +604,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -756,9 +750,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -849,9 +843,9 @@ version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -924,9 +918,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +939,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] @@ -984,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[Preferences]] deps = ["TOML"] @@ -1066,10 +1060,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "3dcb2a98436389c0aac964428a5fa099118944de" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.37.0" +version = "2.38.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1102,9 +1096,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1116,16 +1110,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" +deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.1" +version = "1.88.0" [[SciMLOperators]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.21" +version = "0.1.22" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1140,9 +1134,9 @@ version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "c02bd3c9c3fc8463d3591a62a378f90d2d8ab0f3" +git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.17" +version = "1.3.18" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1189,9 +1183,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1201,9 +1195,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1234,9 +1228,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] @@ -1261,9 +1255,9 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[SymbolicIndexingInterface]] deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" +version = "0.2.2" [[TOML]] deps = ["Dates"] @@ -1330,6 +1324,12 @@ git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" +[[TruncatedStacktraces]] +deps = ["InteractiveUtils"] +git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.0.1" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml index d73f71147..fa5c5c544 100644 --- a/tutorials/02-logistic-regression/Manifest.toml +++ b/tutorials/02-logistic-regression/Manifest.toml @@ -14,9 +14,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -24,10 +24,10 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -73,6 +73,12 @@ git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" +[[ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.2.0" + [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" @@ -116,14 +122,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" - -[[BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.10.7" [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -157,9 +158,9 @@ version = "0.10.7" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -169,9 +170,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] @@ -248,9 +249,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -317,9 +318,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -333,9 +334,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -345,9 +346,9 @@ version = "0.6.43" [[DocStringExtensions]] deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "b19534d1895d702889b219c382a6e18010797f0b" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.8.6" [[Downloads]] deps = ["ArgTools", "LibCURL", "NetworkOptions"] @@ -366,10 +367,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -425,9 +426,9 @@ version = "0.9.20" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "deed294cde3de20ae0b2e0355a6c4e1c6a5ceffc" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.12.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -449,9 +450,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -540,10 +541,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "37e4657cd56b11abe3d10cd4a1ec5fbdb4180263" +deps = ["Base64", "Dates", "IniFile", "MbedTLS", "Sockets"] +git-tree-sha1 = "c7ec02c4c6a039a98a15f955462cd7aea5df4508" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.7.4" +version = "0.8.19" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -652,10 +653,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -697,12 +698,6 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" -[[Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -804,9 +799,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -921,9 +916,9 @@ version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -976,12 +971,6 @@ uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -[[OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "6503b77492fd7fcb9379bf73cd31035670e3c509" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.3.3" - [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" @@ -996,9 +985,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1017,9 +1006,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] @@ -1056,9 +1045,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1156,10 +1145,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "Tables", "ZygoteRules"] +git-tree-sha1 = "a5ce741acddc02f0d4fc6505463ca89697d7fb23" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.37.0" +version = "2.32.3" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1192,9 +1181,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1206,16 +1195,10 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "Tables"] +git-tree-sha1 = "fe89a8113ea445bcff9ee570077830674babb534" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.1" - -[[SciMLOperators]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.21" +version = "1.81.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1230,9 +1213,9 @@ version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "c02bd3c9c3fc8463d3591a62a378f90d2d8ab0f3" +git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.17" +version = "1.3.18" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1258,11 +1241,6 @@ git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" version = "1.0.3" -[[SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - [[SnoopPrecompile]] deps = ["Preferences"] git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" @@ -1284,9 +1262,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1296,9 +1274,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1329,9 +1307,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"] @@ -1360,12 +1338,6 @@ version = "0.6.14" deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" -[[SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" - [[TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" @@ -1432,22 +1404,12 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" -[[Tricks]] -git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.6" - [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" -[[URIs]] -git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.2" - [[UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml index 6e58d62ea..fdbf4e351 100644 --- a/tutorials/03-bayesian-neural-network/Manifest.toml +++ b/tutorials/03-bayesian-neural-network/Manifest.toml @@ -14,9 +14,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -25,15 +25,15 @@ version = "0.4.4" [[Accessors]] deps = ["Compat", "CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Requires", "StaticArrays", "Test"] -git-tree-sha1 = "b9661b900b50ba475145b311a9a0ef9d2a9c85ea" +git-tree-sha1 = "beabc31fa319f9de4d16372bff31b4801e43d32c" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.26" +version = "0.1.28" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -67,17 +67,11 @@ version = "2.3.0" [[ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -[[ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - -[[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" -uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +[[ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.2.0" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -116,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" +version = "0.10.7" [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -175,9 +169,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -187,9 +181,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "Random", "SnoopPrecompile"] @@ -254,9 +248,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[ContextVariablesX]] deps = ["Compat", "Logging", "UUIDs"] @@ -317,9 +311,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -327,9 +321,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -360,10 +354,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -431,9 +425,9 @@ version = "0.8.4" [[Flux]] deps = ["Adapt", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "OneHotArrays", "Optimisers", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "Zygote"] -git-tree-sha1 = "c258e51850ac1fdc465f62380a61995d4a66d603" +git-tree-sha1 = "4ff3a1d7b0dd38f2fc38e813bc801f817639c1f2" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.13.12" +version = "0.13.13" [[FoldsThreads]] deps = ["Accessors", "FunctionWrappers", "InitialValues", "SplittablesBase", "Transducers"] @@ -455,9 +449,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -658,10 +652,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[JuliaVariables]] deps = ["MLStyle", "NameResolution"] @@ -695,9 +689,9 @@ version = "4.16.0" [[LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "771bfe376249626d3ca12bcd58ba243d3f961576" +git-tree-sha1 = "7718cf44439c676bc0ec66a87099f41015a522d6" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.16+0" +version = "0.0.16+2" [[LRUCache]] git-tree-sha1 = "d862633ef6097461037a00a13f709a62ae4bdfdd" @@ -822,9 +816,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -920,9 +914,9 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NNlibCUDA]] deps = ["Adapt", "CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics", "cuDNN"] @@ -992,9 +986,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1013,9 +1007,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] @@ -1052,9 +1046,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[Preferences]] deps = ["TOML"] @@ -1151,10 +1145,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "3dcb2a98436389c0aac964428a5fa099118944de" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.37.0" +version = "2.38.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1193,9 +1187,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1207,16 +1201,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" +deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.1" +version = "1.88.0" [[SciMLOperators]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.21" +version = "0.1.22" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1280,9 +1274,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1292,9 +1286,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1325,9 +1319,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StringManipulation]] git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" @@ -1346,9 +1340,9 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[SymbolicIndexingInterface]] deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" +version = "0.2.2" [[TOML]] deps = ["Dates"] @@ -1409,6 +1403,12 @@ git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" +[[TruncatedStacktraces]] +deps = ["InteractiveUtils"] +git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.0.1" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml index df7f1c577..6d046d3c7 100644 --- a/tutorials/04-hidden-markov-model/Manifest.toml +++ b/tutorials/04-hidden-markov-model/Manifest.toml @@ -14,9 +14,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -24,10 +24,10 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -73,17 +73,11 @@ git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" -[[ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - -[[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" -uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +[[ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.2.0" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -116,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" +version = "0.10.7" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -145,9 +139,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -157,9 +151,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] @@ -236,9 +230,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -299,9 +293,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -315,9 +309,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -348,10 +342,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -419,9 +413,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -610,10 +604,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -756,9 +750,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -849,9 +843,9 @@ version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -924,9 +918,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +939,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] @@ -984,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[Preferences]] deps = ["TOML"] @@ -1066,10 +1060,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "3dcb2a98436389c0aac964428a5fa099118944de" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.37.0" +version = "2.38.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1102,9 +1096,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1116,16 +1110,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" +deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.1" +version = "1.88.0" [[SciMLOperators]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.21" +version = "0.1.22" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1140,9 +1134,9 @@ version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "c02bd3c9c3fc8463d3591a62a378f90d2d8ab0f3" +git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.17" +version = "1.3.18" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1189,9 +1183,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1201,9 +1195,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1234,9 +1228,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] @@ -1261,9 +1255,9 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[SymbolicIndexingInterface]] deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" +version = "0.2.2" [[TOML]] deps = ["Dates"] @@ -1330,6 +1324,12 @@ git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" +[[TruncatedStacktraces]] +deps = ["InteractiveUtils"] +git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.0.1" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml index 90da61733..50d00564e 100644 --- a/tutorials/05-linear-regression/Manifest.toml +++ b/tutorials/05-linear-regression/Manifest.toml @@ -14,9 +14,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -25,15 +25,15 @@ version = "0.4.4" [[Accessors]] deps = ["Compat", "CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Requires", "StaticArrays", "Test"] -git-tree-sha1 = "b9661b900b50ba475145b311a9a0ef9d2a9c85ea" +git-tree-sha1 = "beabc31fa319f9de4d16372bff31b4801e43d32c" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.26" +version = "0.1.28" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -79,17 +79,11 @@ git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" -[[ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - -[[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" -uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +[[ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.2.0" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -122,9 +116,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" +version = "0.10.7" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -163,9 +157,9 @@ version = "0.10.7" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -175,9 +169,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] @@ -254,9 +248,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[ContextVariablesX]] deps = ["Compat", "Logging", "UUIDs"] @@ -329,9 +323,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -345,9 +339,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -378,10 +372,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -479,9 +473,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -682,10 +676,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[JuliaVariables]] deps = ["MLStyle", "NameResolution"] @@ -834,9 +828,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -944,9 +938,9 @@ version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -1025,9 +1019,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1046,9 +1040,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] @@ -1085,9 +1079,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1190,10 +1184,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "3dcb2a98436389c0aac964428a5fa099118944de" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.37.0" +version = "2.38.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1226,9 +1220,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1240,16 +1234,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" +deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.1" +version = "1.88.0" [[SciMLOperators]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.21" +version = "0.1.22" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1264,9 +1258,9 @@ version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "c02bd3c9c3fc8463d3591a62a378f90d2d8ab0f3" +git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.17" +version = "1.3.18" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1329,9 +1323,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1341,9 +1335,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1374,9 +1368,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"] @@ -1407,9 +1401,9 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[SymbolicIndexingInterface]] deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" +version = "0.2.2" [[TOML]] deps = ["Dates"] @@ -1482,6 +1476,12 @@ git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" +[[TruncatedStacktraces]] +deps = ["InteractiveUtils"] +git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.0.1" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml index cc60fff52..544845d8a 100644 --- a/tutorials/06-infinite-mixture-model/Manifest.toml +++ b/tutorials/06-infinite-mixture-model/Manifest.toml @@ -14,9 +14,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -24,10 +24,10 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -61,17 +61,11 @@ version = "2.3.0" [[ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -[[ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - -[[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" -uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +[[ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.2.0" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -104,9 +98,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" +version = "0.10.7" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -133,9 +127,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -145,9 +139,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -218,9 +212,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -275,9 +269,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -285,9 +279,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -318,10 +312,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -389,9 +383,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -580,10 +574,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -726,9 +720,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -813,9 +807,9 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -873,9 +867,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -894,9 +888,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] @@ -933,9 +927,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[Preferences]] deps = ["TOML"] @@ -1015,10 +1009,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "3dcb2a98436389c0aac964428a5fa099118944de" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.37.0" +version = "2.38.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1051,9 +1045,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1065,16 +1059,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" +deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.1" +version = "1.88.0" [[SciMLOperators]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.21" +version = "0.1.22" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1132,9 +1126,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1144,9 +1138,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1177,9 +1171,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StringManipulation]] git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" @@ -1198,9 +1192,9 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[SymbolicIndexingInterface]] deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" +version = "0.2.2" [[TOML]] deps = ["Dates"] @@ -1261,6 +1255,12 @@ git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" +[[TruncatedStacktraces]] +deps = ["InteractiveUtils"] +git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.0.1" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml index d73f71147..fa5c5c544 100644 --- a/tutorials/07-poisson-regression/Manifest.toml +++ b/tutorials/07-poisson-regression/Manifest.toml @@ -14,9 +14,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -24,10 +24,10 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -73,6 +73,12 @@ git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" +[[ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.2.0" + [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" @@ -116,14 +122,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" - -[[BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.10.7" [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -157,9 +158,9 @@ version = "0.10.7" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -169,9 +170,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] @@ -248,9 +249,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -317,9 +318,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -333,9 +334,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -345,9 +346,9 @@ version = "0.6.43" [[DocStringExtensions]] deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "b19534d1895d702889b219c382a6e18010797f0b" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.8.6" [[Downloads]] deps = ["ArgTools", "LibCURL", "NetworkOptions"] @@ -366,10 +367,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -425,9 +426,9 @@ version = "0.9.20" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "deed294cde3de20ae0b2e0355a6c4e1c6a5ceffc" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.12.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -449,9 +450,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -540,10 +541,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "37e4657cd56b11abe3d10cd4a1ec5fbdb4180263" +deps = ["Base64", "Dates", "IniFile", "MbedTLS", "Sockets"] +git-tree-sha1 = "c7ec02c4c6a039a98a15f955462cd7aea5df4508" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.7.4" +version = "0.8.19" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -652,10 +653,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -697,12 +698,6 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" -[[Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -804,9 +799,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -921,9 +916,9 @@ version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -976,12 +971,6 @@ uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -[[OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "6503b77492fd7fcb9379bf73cd31035670e3c509" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.3.3" - [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" @@ -996,9 +985,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1017,9 +1006,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] @@ -1056,9 +1045,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1156,10 +1145,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "Tables", "ZygoteRules"] +git-tree-sha1 = "a5ce741acddc02f0d4fc6505463ca89697d7fb23" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.37.0" +version = "2.32.3" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1192,9 +1181,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1206,16 +1195,10 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "Tables"] +git-tree-sha1 = "fe89a8113ea445bcff9ee570077830674babb534" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.1" - -[[SciMLOperators]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.21" +version = "1.81.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1230,9 +1213,9 @@ version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "c02bd3c9c3fc8463d3591a62a378f90d2d8ab0f3" +git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.17" +version = "1.3.18" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1258,11 +1241,6 @@ git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" version = "1.0.3" -[[SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - [[SnoopPrecompile]] deps = ["Preferences"] git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" @@ -1284,9 +1262,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1296,9 +1274,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1329,9 +1307,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"] @@ -1360,12 +1338,6 @@ version = "0.6.14" deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" -[[SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" - [[TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" @@ -1432,22 +1404,12 @@ git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" -[[Tricks]] -git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.6" - [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" -[[URIs]] -git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.2" - [[UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml index d48d539bd..3d35425be 100644 --- a/tutorials/08-multinomial-logistic-regression/Manifest.toml +++ b/tutorials/08-multinomial-logistic-regression/Manifest.toml @@ -14,9 +14,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -24,10 +24,10 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -73,17 +73,11 @@ git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" -[[ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - -[[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" -uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +[[ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.2.0" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -116,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" +version = "0.10.7" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -157,9 +151,9 @@ version = "0.10.7" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -169,9 +163,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] @@ -248,9 +242,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -317,9 +311,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -333,9 +327,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -366,10 +360,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -449,9 +443,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -646,10 +640,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -798,9 +792,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -915,9 +909,9 @@ version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -990,9 +984,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1011,9 +1005,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] @@ -1050,9 +1044,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1150,10 +1144,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "3dcb2a98436389c0aac964428a5fa099118944de" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.37.0" +version = "2.38.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1186,9 +1180,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1200,16 +1194,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" +deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.1" +version = "1.88.0" [[SciMLOperators]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.21" +version = "0.1.22" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1224,9 +1218,9 @@ version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "c02bd3c9c3fc8463d3591a62a378f90d2d8ab0f3" +git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.17" +version = "1.3.18" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1273,9 +1267,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1285,9 +1279,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1318,9 +1312,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] @@ -1345,9 +1339,9 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[SymbolicIndexingInterface]] deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" +version = "0.2.2" [[TOML]] deps = ["Dates"] @@ -1420,6 +1414,12 @@ git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" +[[TruncatedStacktraces]] +deps = ["InteractiveUtils"] +git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.0.1" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml index b1296c36b..3e1029731 100644 --- a/tutorials/09-variational-inference/Manifest.toml +++ b/tutorials/09-variational-inference/Manifest.toml @@ -14,9 +14,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -25,15 +25,15 @@ version = "0.4.4" [[Accessors]] deps = ["Compat", "CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Requires", "StaticArrays", "Test"] -git-tree-sha1 = "b9661b900b50ba475145b311a9a0ef9d2a9c85ea" +git-tree-sha1 = "beabc31fa319f9de4d16372bff31b4801e43d32c" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.26" +version = "0.1.28" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -80,10 +80,10 @@ uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" [[ArrayInterface]] -deps = ["ArrayInterfaceCore", "Compat", "IfElse", "LinearAlgebra", "SnoopPrecompile", "Static"] -git-tree-sha1 = "dedc16cbdd1d32bead4617d27572f582216ccf23" +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "6.0.25" +version = "7.2.0" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -134,9 +134,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" +version = "0.10.7" [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -205,9 +205,9 @@ version = "0.10.7" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -217,9 +217,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] @@ -274,20 +274,20 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[Compat]] -deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] -git-tree-sha1 = "78bee250c6826e1cf805a88b7f1e86025275d208" +deps = ["Dates", "LinearAlgebra", "UUIDs"] +git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "3.46.0" +version = "4.6.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" [[ComponentArrays]] -deps = ["ArrayInterface", "ChainRulesCore", "LinearAlgebra", "Requires"] -git-tree-sha1 = "95657fa9fdb20ecb1a0c9b43dc05deeba622b3de" +deps = ["ArrayInterface", "ChainRulesCore", "LinearAlgebra", "Requires", "StaticArrayInterface"] +git-tree-sha1 = "2736dee49260e412a352b2d0a37fb863f9a5b559" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.13.7" +version = "0.13.8" [[CompositionsBase]] git-tree-sha1 = "455419f7e328a1a2493cabc6428d79e951349769" @@ -302,9 +302,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[ContextVariablesX]] deps = ["Compat", "Logging", "UUIDs"] @@ -328,10 +328,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.14.0" [[DataFrames]] -deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "db2a9cb664fcea7836da4b414c3278d71dd602d2" +deps = ["Compat", "DataAPI", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "aa51303df86f8626a962fccb878430cdb0a97eee" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.3.6" +version = "1.5.0" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] @@ -377,9 +377,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -393,9 +393,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -426,10 +426,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -509,9 +509,9 @@ version = "0.8.4" [[Flux]] deps = ["Adapt", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "OneHotArrays", "Optimisers", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "Zygote"] -git-tree-sha1 = "c258e51850ac1fdc465f62380a61995d4a66d603" +git-tree-sha1 = "4ff3a1d7b0dd38f2fc38e813bc801f817639c1f2" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.13.12" +version = "0.13.13" [[FoldsThreads]] deps = ["Accessors", "FunctionWrappers", "InitialValues", "SplittablesBase", "Transducers"] @@ -533,9 +533,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -753,10 +753,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[JuliaVariables]] deps = ["MLStyle", "NameResolution"] @@ -790,9 +790,9 @@ version = "4.16.0" [[LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "771bfe376249626d3ca12bcd58ba243d3f961576" +git-tree-sha1 = "7718cf44439c676bc0ec66a87099f41015a522d6" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.16+0" +version = "0.0.16+2" [[LRUCache]] git-tree-sha1 = "d862633ef6097461037a00a13f709a62ae4bdfdd" @@ -911,9 +911,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -954,10 +954,10 @@ uuid = "d8e11817-5142-5d16-987a-aa16d5891078" version = "0.4.17" [[MLUtils]] -deps = ["ChainRulesCore", "DataAPI", "DelimitedFiles", "FLoops", "FoldsThreads", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] -git-tree-sha1 = "82c1104919d664ab1024663ad851701415300c5f" +deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "FoldsThreads", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] +git-tree-sha1 = "f69cdbb5b7c630c02481d81d50eac43697084fe0" uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.3.1" +version = "0.4.1" [[MacroTools]] deps = ["Markdown", "Random"] @@ -1021,9 +1021,9 @@ version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NNlibCUDA]] deps = ["Adapt", "CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics", "cuDNN"] @@ -1081,10 +1081,10 @@ uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.5+1" [[OneHotArrays]] -deps = ["Adapt", "ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "MLUtils", "NNlib"] -git-tree-sha1 = "aee0130122fa7c1f3d394231376f07869f1e097c" +deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] +git-tree-sha1 = "f511fca956ed9e70b80cd3417bb8c2dde4b68644" uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" -version = "0.2.0" +version = "0.2.3" [[OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] @@ -1108,9 +1108,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1129,9 +1129,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] @@ -1168,9 +1168,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1190,10 +1190,10 @@ uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" version = "0.2.0" [[PrettyTables]] -deps = ["Crayons", "Formatting", "Markdown", "Reexport", "Tables"] -git-tree-sha1 = "dfb54c4e414caa595a1f2ed759b160f5a3ddcba5" +deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "1.3.1" +version = "2.2.2" [[Printf]] deps = ["Unicode"] @@ -1321,9 +1321,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1353,9 +1353,9 @@ version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "c02bd3c9c3fc8463d3591a62a378f90d2d8ab0f3" +git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.17" +version = "1.3.18" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1413,9 +1413,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1425,15 +1425,21 @@ version = "0.1.15" [[Static]] deps = ["IfElse"] -git-tree-sha1 = "c35b107b61e7f34fa3f124026f2a9be97dea9e1c" +git-tree-sha1 = "d0435ba43ab5ad1cbb5f0d286ca4ba67029ed3ee" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.3" +version = "0.8.4" + +[[StaticArrayInterface]] +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "Static", "SuiteSparse"] +git-tree-sha1 = "5589ab073f8a244d2530b36478f53806f9106002" +uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" +version = "1.2.1" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1464,9 +1470,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"] @@ -1480,6 +1486,11 @@ git-tree-sha1 = "e0d5bc26226ab1b7648278169858adcfbd861780" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" version = "0.15.4" +[[StringManipulation]] +git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.0" + [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml index b189f5f6e..1617fc064 100644 --- a/tutorials/10-bayesian-differential-equations/Manifest.toml +++ b/tutorials/10-bayesian-differential-equations/Manifest.toml @@ -14,9 +14,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -24,10 +24,10 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -80,10 +80,10 @@ uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" [[ArrayInterface]] -deps = ["ArrayInterfaceCore", "Compat", "IfElse", "LinearAlgebra", "SnoopPrecompile", "Static"] -git-tree-sha1 = "dedc16cbdd1d32bead4617d27572f582216ccf23" +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "6.0.25" +version = "7.2.0" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -91,36 +91,6 @@ git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" version = "0.1.29" -[[ArrayInterfaceGPUArrays]] -deps = ["Adapt", "ArrayInterfaceCore", "GPUArraysCore", "LinearAlgebra"] -git-tree-sha1 = "fc114f550b93d4c79632c2ada2924635aabfa5ed" -uuid = "6ba088a2-8465-4c0a-af30-387133b534db" -version = "0.2.2" - -[[ArrayInterfaceOffsetArrays]] -deps = ["ArrayInterface", "OffsetArrays", "Static"] -git-tree-sha1 = "3d1a9a01976971063b3930d1aed1d9c4af0817f8" -uuid = "015c0d05-e682-4f19-8f0a-679ce4c54826" -version = "0.1.7" - -[[ArrayInterfaceStaticArrays]] -deps = ["Adapt", "ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "LinearAlgebra", "Static", "StaticArrays"] -git-tree-sha1 = "f12dc65aef03d0a49650b20b2fdaf184928fd886" -uuid = "b0d46f97-bff5-4637-a19a-dd75974142cd" -version = "0.1.5" - -[[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" -uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" - -[[ArrayInterfaceTracker]] -deps = ["ArrayInterfaceCore", "Tracker"] -git-tree-sha1 = "9600e1ef98f7067dc91c22c0759c60580a0320dd" -uuid = "a2b0951a-f94f-4742-8780-617792921f9b" -version = "0.1.1" - [[ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "SparseArrays"] git-tree-sha1 = "4aff5fa660eb95c2e0deb6bcdabe4d9a96bc4667" @@ -144,9 +114,9 @@ version = "0.4.6" [[BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "SnoopPrecompile", "SparseArrays"] -git-tree-sha1 = "8b0a59f488eb3aceccffa341beeeca9957867919" +git-tree-sha1 = "ee75410471c18f40d57eb53840bc705a74566f23" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "0.17.14" +version = "0.17.16" [[BangBang]] deps = ["Compat", "ConstructionBase", "Future", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables", "ZygoteRules"] @@ -164,9 +134,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" +version = "0.10.7" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -221,9 +191,9 @@ version = "0.3.11" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -233,15 +203,15 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[CloseOpenIntervals]] -deps = ["ArrayInterface", "Static"] -git-tree-sha1 = "d61300b9895f129f4bd684b2aff97cf319b6c493" +deps = ["Static", "StaticArrayInterface"] +git-tree-sha1 = "70232f82ffaab9dc52585e0dd043b5e0c6b714f1" uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.11" +version = "0.1.12" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] @@ -318,9 +288,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -371,9 +341,9 @@ version = "0.1.2" [[DelayDiffEq]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "UnPack"] -git-tree-sha1 = "2954c361da6ff0bbd1d95ed4d549b649eea919ca" +git-tree-sha1 = "dde3fa2cfc91fb5d39ba2a7dc7e4383e0a6665b3" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.40.7" +version = "5.41.0" [[DelimitedFiles]] deps = ["Mmap"] @@ -386,10 +356,10 @@ uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" version = "0.4.0" [[DiffEqBase]] -deps = ["ArrayInterfaceCore", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "Static", "StaticArrays", "Statistics", "Tricks", "ZygoteRules"] -git-tree-sha1 = "b91fef836ef8c2c4480bce90bb8981e1ac21b444" +deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] +git-tree-sha1 = "a057a5fe2a6a05f28ef1092d5974a0c2986be23c" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.117.0" +version = "6.121.1" [[DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] @@ -411,9 +381,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[DifferentialEquations]] deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"] @@ -433,9 +403,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -466,16 +436,16 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipsisNotation]] -deps = ["ArrayInterface"] -git-tree-sha1 = "03b753748fd193a7f2730c02d880da27c5a24508" +deps = ["StaticArrayInterface"] +git-tree-sha1 = "d89f0d98f6296a08b73fdfed559f8e86f871cc06" uuid = "da5c29d0-fa7d-589e-88eb-ea29b0a81949" -version = "1.6.0" +version = "1.7.0" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -507,10 +477,10 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExponentialUtilities]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceGPUArrays", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "Printf", "SnoopPrecompile", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "1c06afe6eb356a6148a2e5f07eddaf30f018bd5b" +deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "Printf", "SnoopPrecompile", "SparseArrays", "libblastrampoline_jll"] +git-tree-sha1 = "fb7dbef7d2631e2d02c49e2750f7447648b0ec9b" uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.22.1" +version = "1.24.0" [[ExprTools]] git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" @@ -542,10 +512,10 @@ uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" version = "3.3.10+0" [[FastBroadcast]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "LinearAlgebra", "Polyester", "Static", "StrideArraysCore"] -git-tree-sha1 = "4bef892787c972913d4d84e7255400759bb650e5" +deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] +git-tree-sha1 = "d1248fceea0b26493fd33e8e9e8c553270da03bd" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.2.4" +version = "0.2.5" [[FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -554,9 +524,9 @@ version = "0.3.2" [[FastLapackInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "7fbaf9f73cd4c8561702ea9b16acf3f99d913fe4" +git-tree-sha1 = "c1293a93193f0ae94be7cf338d33e162c39d8788" uuid = "29a986be-02c6-4525-aec4-84b980013641" -version = "1.2.8" +version = "1.2.9" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] @@ -565,10 +535,10 @@ uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" version = "0.13.7" [[FiniteDiff]] -deps = ["ArrayInterfaceCore", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "04ed1f0029b6b3af88343e439b995141cb0d0b8d" +deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"] +git-tree-sha1 = "ed1b56934a2f7a65035976985da71b6a65b4f2cf" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.17.0" +version = "2.18.0" [[FixedPointNumbers]] deps = ["Statistics"] @@ -590,9 +560,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -827,16 +797,16 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[JumpProcesses]] -deps = ["ArrayInterfaceCore", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"] -git-tree-sha1 = "09ed2720b2e343e48780a3156c4a6cef8dd54192" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"] +git-tree-sha1 = "7af8d30e281ce558807917b69ba16575d05f412b" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.3.1" +version = "9.5.1" [[KLU]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] @@ -882,9 +852,9 @@ version = "4.16.0" [[LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "771bfe376249626d3ca12bcd58ba243d3f961576" +git-tree-sha1 = "7718cf44439c676bc0ec66a87099f41015a522d6" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.16+0" +version = "0.0.16+2" [[LRUCache]] git-tree-sha1 = "d862633ef6097461037a00a13f709a62ae4bdfdd" @@ -909,10 +879,10 @@ uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" [[LayoutPointers]] -deps = ["ArrayInterface", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static"] -git-tree-sha1 = "0ad6f0c51ce004dadc24a28a0dfecfb568e52242" +deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.13" +version = "0.1.14" [[Lazy]] deps = ["MacroTools"] @@ -1020,10 +990,10 @@ deps = ["Libdl"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[LinearSolve]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "FastLapackInterface", "GPUArraysCore", "IterativeSolvers", "KLU", "Krylov", "KrylovKit", "LinearAlgebra", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SnoopPrecompile", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "ed97c2b4e46d02d4c866d3ccfae039a6c09568b1" +deps = ["ArrayInterface", "DocStringExtensions", "FastLapackInterface", "GPUArraysCore", "IterativeSolvers", "KLU", "Krylov", "KrylovKit", "LinearAlgebra", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SnoopPrecompile", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] +git-tree-sha1 = "d1fce810e9a4213607f0182cf25ffd6ce13e19b6" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "1.35.0" +version = "1.37.0" [[LogDensityProblems]] deps = ["ArgCheck", "DocStringExtensions", "Random", "Requires", "UnPack"] @@ -1033,9 +1003,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -1047,10 +1017,10 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "0.4.9" [[LoopVectorization]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDTypes", "SLEEFPirates", "SnoopPrecompile", "SpecialFunctions", "Static", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "9696a80c21a56b937e3fd89e972f8db5db3186e2" +deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDTypes", "SLEEFPirates", "SnoopPrecompile", "SpecialFunctions", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "2acf6874142d05d5d1ad49e8d3786b8cd800936d" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.150" +version = "0.12.152" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] @@ -1154,9 +1124,9 @@ version = "4.5.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -1185,10 +1155,10 @@ version = "0.4.13" uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" [[NonlinearSolve]] -deps = ["ArrayInterfaceCore", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "e2b063236a3103a3640ff1f2e3945ca387281cbe" +deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "3f856788ba532419c07ba2e0dc37b06e5d784992" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "1.3.0" +version = "1.5.0" [[ObjectFile]] deps = ["Reexport", "StructIO"] @@ -1247,9 +1217,9 @@ version = "1.7.4" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1263,10 +1233,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.4.1" [[OrdinaryDiffEq]] -deps = ["Adapt", "ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceGPUArrays", "ArrayInterfaceStaticArrays", "ArrayInterfaceStaticArraysCore", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SimpleNonlinearSolve", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "9e846d9c0f66fed04e7617a8bc380918a1ffe7ff" +deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SimpleNonlinearSolve", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces", "UnPack"] +git-tree-sha1 = "61d1c15e207939bd591ef81be31293c66f9f1905" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.44.0" +version = "6.48.2" [[PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1274,9 +1244,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1319,9 +1289,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[PoissonRandom]] deps = ["Random"] @@ -1330,10 +1300,10 @@ uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.3" [[Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "e8e0fabcff4df8686c4267503887202a783d498e" +deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] +git-tree-sha1 = "0fe4e7c4d8ff4c70bfa507f0dd96fa161b115777" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.2" +version = "0.7.3" [[PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1348,10 +1318,10 @@ uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" version = "0.2.4" [[PreallocationTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ForwardDiff", "Requires"] -git-tree-sha1 = "2c7658dd593e3adc118b00429e1048829f1abb8c" +deps = ["Adapt", "ArrayInterface", "ForwardDiff", "Requires"] +git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.11" +version = "0.4.12" [[Preferences]] deps = ["TOML"] @@ -1443,10 +1413,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "3dcb2a98436389c0aac964428a5fa099118944de" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.37.0" +version = "2.38.0" [[RecursiveFactorization]] deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "SnoopPrecompile", "StrideArraysCore", "TriangularSolve"] @@ -1497,9 +1467,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1522,10 +1492,10 @@ uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" version = "0.6.38" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" +deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.1" +version = "1.88.0" [[SciMLNLSolve]] deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"] @@ -1534,16 +1504,16 @@ uuid = "e9a6253c-8580-4d32-9898-8661bb511710" version = "0.1.3" [[SciMLOperators]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.21" +version = "0.1.22" [[SciMLSensitivity]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceTracker", "Cassette", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SimpleNonlinearSolve", "StaticArrays", "Statistics", "StochasticDiffEq", "Tracker", "Zygote", "ZygoteRules"] -git-tree-sha1 = "4279785280662e78c69548f1747181a65e7fa6ab" +deps = ["Adapt", "ArrayInterface", "Cassette", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SimpleNonlinearSolve", "StaticArraysCore", "Statistics", "StochasticDiffEq", "Tracker", "Zygote", "ZygoteRules"] +git-tree-sha1 = "44461c4b1b91a2ae4d1d8e8bacf217d249204bcd" uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.20.0" +version = "7.24.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1558,9 +1528,9 @@ version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "c02bd3c9c3fc8463d3591a62a378f90d2d8ab0f3" +git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.17" +version = "1.3.18" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1587,10 +1557,10 @@ uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.1.0" [[SimpleNonlinearSolve]] -deps = ["ArrayInterfaceCore", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "Reexport", "SciMLBase", "SnoopPrecompile", "StaticArraysCore"] -git-tree-sha1 = "3f558105e8ef4aac1e22bf30bd1f1e95698bfc95" +deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "Reexport", "Requires", "SciMLBase", "SnoopPrecompile", "StaticArraysCore"] +git-tree-sha1 = "326789bbaa1b65b809bd4596b74e4fc3be5af6ac" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.10" +version = "0.1.13" [[SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -1618,10 +1588,10 @@ deps = ["LinearAlgebra", "Random"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SparseDiffTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArrays", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays", "VertexSafeGraphs"] -git-tree-sha1 = "4245283bee733122a9cb4545748d64e0c63337c0" +deps = ["Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays", "VertexSafeGraphs"] +git-tree-sha1 = "e19ac47477c9a8fcca06dab5e5471417d5d9d723" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "1.30.0" +version = "1.31.0" [[Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] @@ -1631,9 +1601,9 @@ version = "0.3.9" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1643,15 +1613,21 @@ version = "0.1.15" [[Static]] deps = ["IfElse"] -git-tree-sha1 = "c35b107b61e7f34fa3f124026f2a9be97dea9e1c" +git-tree-sha1 = "d0435ba43ab5ad1cbb5f0d286ca4ba67029ed3ee" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.3" +version = "0.8.4" + +[[StaticArrayInterface]] +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "Static", "SuiteSparse"] +git-tree-sha1 = "5589ab073f8a244d2530b36478f53806f9106002" +uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" +version = "1.2.1" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1682,9 +1658,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] @@ -1693,22 +1669,22 @@ uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" version = "0.15.4" [[SteadyStateDiffEq]] -deps = ["DiffEqBase", "DiffEqCallbacks", "EnumX", "LinearAlgebra", "Markdown", "NLsolve", "Reexport", "SciMLBase"] -git-tree-sha1 = "a0cdb38cc0207213a95aa6caa40b3c94ab323f05" +deps = ["DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "NLsolve", "Reexport", "SciMLBase"] +git-tree-sha1 = "8998e426c1d49ef92d4c60cc81acb90ddf92c610" uuid = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f" -version = "1.12.0" +version = "1.13.0" [[StochasticDiffEq]] deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "bd850e7f02936a2af7b3609042e1ac14d86d0471" +git-tree-sha1 = "c6b4b802d4d830e0e958f5f2098d8dea0a935f4b" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.57.5" +version = "6.58.0" [[StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "ThreadingUtilities"] -git-tree-sha1 = "8114ba9c3694827838d45ea3c9f6b9ccb4182cf2" +deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] +git-tree-sha1 = "2842f1dbd12d59f2728ba79f4002cd6b61808f8b" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.4.7" +version = "0.4.8" [[StringManipulation]] git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" @@ -1749,9 +1725,9 @@ version = "5.2.0+1" [[SymbolicIndexingInterface]] deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" +version = "0.2.2" [[TOML]] deps = ["Dates"] @@ -1842,6 +1818,12 @@ git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" +[[TruncatedStacktraces]] +deps = ["InteractiveUtils"] +git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.0.1" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" @@ -1877,10 +1859,10 @@ uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" version = "0.1.2" [[VectorizationBase]] -deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"] -git-tree-sha1 = "4c59c2df8d2676c4691a39fa70495a6db0c5d290" +deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "952ba509a61d1ebb26381ac459c5c6e838ed43c4" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.58" +version = "0.21.60" [[VertexSafeGraphs]] deps = ["Graphs"] diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml index 3bb64c1de..3b325750b 100644 --- a/tutorials/11-probabilistic-pca/Manifest.toml +++ b/tutorials/11-probabilistic-pca/Manifest.toml @@ -14,9 +14,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -24,10 +24,10 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -73,17 +73,11 @@ git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" -[[ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - -[[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" -uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +[[ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.2.0" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -116,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" +version = "0.10.7" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -145,9 +139,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -157,9 +151,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] @@ -236,9 +230,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -305,9 +299,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -321,9 +315,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -354,10 +348,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -425,9 +419,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -622,10 +616,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -768,9 +762,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -861,9 +855,9 @@ version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -936,9 +930,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -957,9 +951,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] @@ -996,9 +990,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1084,10 +1078,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "3dcb2a98436389c0aac964428a5fa099118944de" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.37.0" +version = "2.38.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1126,9 +1120,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1140,16 +1134,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" +deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.1" +version = "1.88.0" [[SciMLOperators]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.21" +version = "0.1.22" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1164,9 +1158,9 @@ version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "c02bd3c9c3fc8463d3591a62a378f90d2d8ab0f3" +git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.17" +version = "1.3.18" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1213,9 +1207,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1225,9 +1219,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1258,9 +1252,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] @@ -1285,9 +1279,9 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[SymbolicIndexingInterface]] deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" +version = "0.2.2" [[TOML]] deps = ["Dates"] @@ -1354,6 +1348,12 @@ git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" +[[TruncatedStacktraces]] +deps = ["InteractiveUtils"] +git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.0.1" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/12-gaussian-process/Manifest.toml b/tutorials/12-gaussian-process/Manifest.toml index 385139edf..4234bb2b0 100644 --- a/tutorials/12-gaussian-process/Manifest.toml +++ b/tutorials/12-gaussian-process/Manifest.toml @@ -8,9 +8,9 @@ version = "1.2.1" [[AbstractGPs]] deps = ["ChainRulesCore", "Distributions", "FillArrays", "IrrationalConstants", "KernelFunctions", "LinearAlgebra", "PDMats", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"] -git-tree-sha1 = "2787c1cd4853242411cc3da8022f3c23494552a7" +git-tree-sha1 = "6ba5aaca86aafc4e24e56ea180761f455ec5e453" uuid = "99985d1d-32ba-4be9-9821-2ec096f28918" -version = "0.5.13" +version = "0.5.14" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -20,9 +20,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -30,10 +30,10 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -67,17 +67,11 @@ version = "2.3.0" [[ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -[[ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - -[[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" -uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +[[ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.2.0" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -110,9 +104,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" +version = "0.10.7" [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -121,10 +115,10 @@ uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.8+0" [[CSV]] -deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings"] -git-tree-sha1 = "c5fd7cd27ac4aed0acf4b73948f0110ff2a854b2" +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "SnoopPrecompile", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] +git-tree-sha1 = "c700cce799b51c9045473de751e9319bdd1c6e94" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.7" +version = "0.10.9" [[Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -146,9 +140,9 @@ version = "0.10.7" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -158,9 +152,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -231,9 +225,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -294,9 +288,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -310,9 +304,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -343,10 +337,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -426,9 +420,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -623,10 +617,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -636,9 +630,9 @@ version = "0.6.5" [[KernelFunctions]] deps = ["ChainRulesCore", "Compat", "CompositionsBase", "Distances", "FillArrays", "Functors", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Random", "Requires", "SpecialFunctions", "Statistics", "StatsBase", "TensorCore", "Test", "ZygoteRules"] -git-tree-sha1 = "0e9ed147ebbd8c5dc4a05ed164068beeca77dffb" +git-tree-sha1 = "2f7e0b873c61238dfd8516d33303ef9aeb68de5e" uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392" -version = "0.10.51" +version = "0.10.52" [[LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -775,9 +769,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -868,9 +862,9 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -922,9 +916,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -943,9 +937,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] @@ -982,9 +976,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1082,10 +1076,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "3dcb2a98436389c0aac964428a5fa099118944de" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.37.0" +version = "2.38.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1124,9 +1118,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1138,16 +1132,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" +deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.1" +version = "1.88.0" [[SciMLOperators]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.21" +version = "0.1.22" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1162,9 +1156,9 @@ version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "c02bd3c9c3fc8463d3591a62a378f90d2d8ab0f3" +git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.17" +version = "1.3.18" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1206,9 +1200,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1218,9 +1212,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1251,9 +1245,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StringManipulation]] git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" @@ -1272,9 +1266,9 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[SymbolicIndexingInterface]] deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" +version = "0.2.2" [[TOML]] deps = ["Dates"] @@ -1341,6 +1335,12 @@ git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" +[[TruncatedStacktraces]] +deps = ["InteractiveUtils"] +git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.0.1" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" @@ -1394,6 +1394,11 @@ git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" version = "0.5.5" +[[WorkerUtilities]] +git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" +uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" +version = "1.6.1" + [[XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] git-tree-sha1 = "93c41695bc1c08c46c5899f4fe06d6ead504bb73" diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml index df7f1c577..6d046d3c7 100644 --- a/tutorials/13-seasonal-time-series/Manifest.toml +++ b/tutorials/13-seasonal-time-series/Manifest.toml @@ -14,9 +14,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -24,10 +24,10 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -73,17 +73,11 @@ git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" -[[ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - -[[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" -uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +[[ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.2.0" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -116,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" +version = "0.10.7" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -145,9 +139,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -157,9 +151,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] @@ -236,9 +230,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -299,9 +293,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -315,9 +309,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -348,10 +342,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -419,9 +413,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -610,10 +604,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -756,9 +750,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -849,9 +843,9 @@ version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -924,9 +918,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +939,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] @@ -984,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[Preferences]] deps = ["TOML"] @@ -1066,10 +1060,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "3dcb2a98436389c0aac964428a5fa099118944de" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.37.0" +version = "2.38.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1102,9 +1096,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1116,16 +1110,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" +deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.1" +version = "1.88.0" [[SciMLOperators]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.21" +version = "0.1.22" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1140,9 +1134,9 @@ version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "c02bd3c9c3fc8463d3591a62a378f90d2d8ab0f3" +git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.17" +version = "1.3.18" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1189,9 +1183,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1201,9 +1195,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1234,9 +1228,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] @@ -1261,9 +1255,9 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[SymbolicIndexingInterface]] deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" +version = "0.2.2" [[TOML]] deps = ["Dates"] @@ -1330,6 +1324,12 @@ git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" +[[TruncatedStacktraces]] +deps = ["InteractiveUtils"] +git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.0.1" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml index a7420f568..e874ac3c4 100644 --- a/tutorials/14-minituring/Manifest.toml +++ b/tutorials/14-minituring/Manifest.toml @@ -14,9 +14,9 @@ version = "4.4.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -24,10 +24,10 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -61,6 +61,12 @@ version = "2.3.0" [[ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +[[ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.2.0" + [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" @@ -104,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" +version = "0.10.7" [[Calculus]] deps = ["LinearAlgebra"] @@ -116,9 +122,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -128,9 +134,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" @@ -171,9 +177,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -223,9 +229,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -233,9 +239,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -266,10 +272,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.20.2" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -295,9 +301,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "deed294cde3de20ae0b2e0355a6c4e1c6a5ceffc" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.12.8" [[Formatting]] deps = ["Printf"] @@ -307,9 +313,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" @@ -478,9 +484,9 @@ version = "2.1.0" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -554,9 +560,9 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -596,9 +602,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[OrderedCollections]] git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c" @@ -607,9 +613,9 @@ version = "1.4.1" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Pkg]] deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] @@ -711,9 +717,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -769,9 +775,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -781,9 +787,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -814,9 +820,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StringManipulation]] git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml index df7f1c577..6d046d3c7 100644 --- a/tutorials/docs-00-getting-started/Manifest.toml +++ b/tutorials/docs-00-getting-started/Manifest.toml @@ -14,9 +14,9 @@ version = "4.2.0" [[AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "8f5d88dc15df270d8778ade9442d608939c75659" +git-tree-sha1 = "33ea6c6837332395dbf3ba336f273c9f7fcf4db9" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.5.3" +version = "0.5.4" [[AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -24,10 +24,10 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.4" [[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0310e08cb19f5da31d08341c6120c047598f5b9c" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.5.0" +version = "3.6.1" [[AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "Setfield", "Statistics", "StatsBase", "StatsFuns", "UnPack"] @@ -73,17 +73,11 @@ git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" -[[ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - -[[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" -uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +[[ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.2.0" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -116,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "a3704b8e5170f9339dff4e6cb286ad49464d3646" +git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.6" +version = "0.10.7" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -145,9 +139,9 @@ version = "0.5.1" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "fdde4d8a31cf82b1d136cf6cb53924e8744a832b" +git-tree-sha1 = "7d20c2fb8ab838e41069398685e7b6b5f89ed85b" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.47.0" +version = "1.48.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -157,9 +151,9 @@ version = "1.15.7" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "844b061c104c408b24537482469400af6075aae4" +git-tree-sha1 = "485193efd2176b88e6622a39a246f8c5b600e74e" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.5" +version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] @@ -236,9 +230,9 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" +git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.1" +version = "1.5.1" [[Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -299,9 +293,9 @@ version = "1.1.0" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "c5b6685d53f933c11404a3ae9822afe30d522494" +git-tree-sha1 = "a4ad7ef19d2cdc2eff57abbbe68032b1cd0bd8f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.12.2" +version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -315,9 +309,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" +git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.80" +version = "0.25.86" [[DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "DiffRules", "Distributions", "FillArrays", "LinearAlgebra", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "ZygoteRules"] @@ -348,10 +342,10 @@ uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" version = "0.21.4" [[EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterfaceCore", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "4cda4527e990c0cc201286e0a0bfbbce00abcfc2" +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.0.0" +version = "1.1.0" [[EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -419,9 +413,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180" +git-tree-sha1 = "00e252f4d706b3d55a8863432e742bf5717b498d" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.34" +version = "0.10.35" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -610,10 +604,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "2.1.91+0" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -756,9 +750,9 @@ version = "1.0.3" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "680e733c3a0a9cea9e935c8c2184aea6a63fa0b5" +git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.21" +version = "0.3.23" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -849,9 +843,9 @@ version = "0.10.1" [[NNlib]] deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "ddf38a5d9140bc8c08ea6158484a455ca3efdd2d" +git-tree-sha1 = "33ad5a19dc6730d592d8ce91c14354d758e53b0e" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.18" +version = "0.8.19" [[NaNMath]] deps = ["OpenLibm_jll"] @@ -924,9 +918,9 @@ version = "0.5.5+0" [[Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e657acef119cc0de2a8c0762666d3b64727b053b" +git-tree-sha1 = "e5a1825d3d53aa4ad4fb42bd4927011ad4a78c3d" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.14" +version = "0.2.15" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +939,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "67eae2738d63117a196f497d7db789821bce61d1" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] @@ -984,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "8ac949bd0ebc46a44afb1fdca1094554a84b086e" +git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.5" +version = "1.38.6" [[Preferences]] deps = ["TOML"] @@ -1066,10 +1060,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "54e055256bbd41fd10566880bc4baa5316bca6fe" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "3dcb2a98436389c0aac964428a5fa099118944de" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.37.0" +version = "2.38.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1102,9 +1096,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "a3db467ce768343235032a1ca0830fc64158dadf" +git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.8" +version = "2.0.9" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1116,16 +1110,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "76eec814289c4a249ee3747ceeea0d83defbeb8d" +deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.84.1" +version = "1.88.0" [[SciMLOperators]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "c737d575c18bdf9aba0a3c7071d5249d09f45dd8" +deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.21" +version = "0.1.22" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1140,9 +1134,9 @@ version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "c02bd3c9c3fc8463d3591a62a378f90d2d8ab0f3" +git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.17" +version = "1.3.18" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1189,9 +1183,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.2.0" [[SplittablesBase]] deps = ["Setfield", "Test"] @@ -1201,9 +1195,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "67d3e75e8af8089ea34ce96974d5468d4a008ca6" +git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.15" +version = "1.5.16" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1234,9 +1228,9 @@ version = "0.33.21" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "ab6083f09b3e617e34a956b43e9d51b824206932" +git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.1.1" +version = "1.3.0" [[StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] @@ -1261,9 +1255,9 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[SymbolicIndexingInterface]] deps = ["DocStringExtensions"] -git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.1" +version = "0.2.2" [[TOML]] deps = ["Dates"] @@ -1330,6 +1324,12 @@ git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" +[[TruncatedStacktraces]] +deps = ["InteractiveUtils"] +git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.0.1" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" From 9c9fe7c8c031a306a5ced5ee9d9f6499ee7d965b Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Sun, 12 Mar 2023 20:11:44 +0100 Subject: [PATCH 5/7] [UpdateManifests.yml] Update manifest files (#386) * Update manifest files * Fix Manifest file of introduction --------- Co-authored-by: yebai Co-authored-by: David Widmann --- tutorials/00-introduction/Manifest.toml | 140 ++++++++++++------ .../01-gaussian-mixture-model/Manifest.toml | 54 +++---- .../02-logistic-regression/Manifest.toml | 50 +++---- .../03-bayesian-neural-network/Manifest.toml | 70 ++++----- .../04-hidden-markov-model/Manifest.toml | 54 +++---- tutorials/05-linear-regression/Manifest.toml | 58 ++++---- .../06-infinite-mixture-model/Manifest.toml | 50 +++---- tutorials/07-poisson-regression/Manifest.toml | 50 +++---- .../Manifest.toml | 58 ++++---- .../09-variational-inference/Manifest.toml | 74 ++++----- .../Manifest.toml | 105 ++++++------- tutorials/11-probabilistic-pca/Manifest.toml | 54 +++---- tutorials/12-gaussian-process/Manifest.toml | 58 ++++---- .../13-seasonal-time-series/Manifest.toml | 54 +++---- tutorials/14-minituring/Manifest.toml | 32 ++-- .../docs-00-getting-started/Manifest.toml | 54 +++---- 16 files changed, 535 insertions(+), 480 deletions(-) diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml index a09b1d579..0c149d3e0 100644 --- a/tutorials/00-introduction/Manifest.toml +++ b/tutorials/00-introduction/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -75,21 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" - -[[ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - -[[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" -uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +version = "7.2.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -126,6 +114,11 @@ git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" uuid = "76274a88-744f-5084-9051-94815aaf08c4" version = "0.10.7" +[[BitFlags]] +git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.7" + [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" @@ -168,6 +161,12 @@ git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" version = "0.14.3" +[[CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "9c209fb7536406834aa938fb149964b985de6c83" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.1" + [[ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "Random", "SnoopPrecompile"] git-tree-sha1 = "aa3edc8f8dea6cbfa176ee12f7c2fc82f0608ed3" @@ -210,9 +209,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -300,9 +299,9 @@ version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -322,9 +321,9 @@ version = "0.6.43" [[DocStringExtensions]] deps = ["LibGit2"] -git-tree-sha1 = "b19534d1895d702889b219c382a6e18010797f0b" +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.8.6" +version = "0.9.3" [[Downloads]] deps = ["ArgTools", "LibCURL", "NetworkOptions"] @@ -360,9 +359,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -378,9 +377,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -390,9 +389,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "deed294cde3de20ae0b2e0355a6c4e1c6a5ceffc" +git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.12.8" +version = "0.13.7" [[FixedPointNumbers]] deps = ["Statistics"] @@ -499,10 +498,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "Dates", "IniFile", "MbedTLS", "Sockets"] -git-tree-sha1 = "c7ec02c4c6a039a98a15f955462cd7aea5df4508" +deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "37e4657cd56b11abe3d10cd4a1ec5fbdb4180263" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "0.8.19" +version = "1.7.4" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -650,6 +649,12 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -893,6 +898,12 @@ uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +[[OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "6503b77492fd7fcb9379bf73cd31035670e3c509" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.3.3" + [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" @@ -934,9 +945,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -967,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[Preferences]] deps = ["TOML"] @@ -1049,10 +1060,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "Tables", "ZygoteRules"] -git-tree-sha1 = "a5ce741acddc02f0d4fc6505463ca89697d7fb23" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "3dcb2a98436389c0aac964428a5fa099118944de" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.32.3" +version = "2.38.0" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1085,9 +1096,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1099,10 +1110,16 @@ version = "0.5.5" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "Tables"] -git-tree-sha1 = "fe89a8113ea445bcff9ee570077830674babb534" +deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.81.0" +version = "1.90.0" + +[[SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] +git-tree-sha1 = "e61e48ef909375203092a6e83508c8416df55a83" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.2.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1111,9 +1128,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[SentinelArrays]] deps = ["Dates", "Random"] @@ -1140,6 +1157,11 @@ git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" version = "1.0.3" +[[SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + [[SnoopPrecompile]] deps = ["Preferences"] git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" @@ -1231,6 +1253,12 @@ version = "0.6.14" deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" +[[SymbolicIndexingInterface]] +deps = ["DocStringExtensions"] +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.2.2" + [[TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" @@ -1279,18 +1307,40 @@ git-tree-sha1 = "77817887c4b414b9c6914c61273910e3234eb21c" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" version = "0.2.23" +[[TranscodingStreams]] +deps = ["Random", "Test"] +git-tree-sha1 = "94f38103c984f89cf77c402f2a68dbd870f8165f" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.9.11" + [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + +[[TruncatedStacktraces]] +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.1.0" + [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" +[[URIs]] +git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.4.2" + [[UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml index 6d046d3c7..0c149d3e0 100644 --- a/tutorials/01-gaussian-mixture-model/Manifest.toml +++ b/tutorials/01-gaussian-mixture-model/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -209,9 +209,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -299,9 +299,9 @@ version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -359,9 +359,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -377,9 +377,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +945,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -978,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[Preferences]] deps = ["TOML"] @@ -1096,9 +1096,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1111,15 +1111,15 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" +git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.88.0" +version = "1.90.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" +git-tree-sha1 = "e61e48ef909375203092a6e83508c8416df55a83" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.22" +version = "0.2.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1128,9 +1128,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[SentinelArrays]] deps = ["Dates", "Random"] @@ -1325,10 +1325,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils"] -git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.0.1" +version = "1.1.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml index fa5c5c544..2f1d5f154 100644 --- a/tutorials/02-logistic-regression/Manifest.toml +++ b/tutorials/02-logistic-regression/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -86,10 +86,10 @@ uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" version = "0.1.29" [[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" +deps = ["ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] +git-tree-sha1 = "01a9f8e6cfc2bfdd01d333f70b8014a04893103c" uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +version = "0.1.4" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -228,9 +228,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -324,9 +324,9 @@ version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -384,9 +384,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -402,9 +402,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -901,9 +901,9 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[Mocking]] deps = ["Compat", "ExprTools"] -git-tree-sha1 = "c272302b22479a24d1cf48c114ad702933414f80" +git-tree-sha1 = "782e258e80d68a73d8c916e55f8ced1de00c2cea" uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.5" +version = "0.7.6" [[MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" @@ -1012,9 +1012,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1045,9 +1045,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1181,9 +1181,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1207,9 +1207,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[SentinelArrays]] deps = ["Dates", "Random"] diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml index fdbf4e351..f55b487bb 100644 --- a/tutorials/03-bayesian-neural-network/Manifest.toml +++ b/tutorials/03-bayesian-neural-network/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -69,9 +69,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -151,9 +151,9 @@ version = "0.2.3+2" [[CUDNN_jll]] deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "57011df4fce448828165e566af9befa2ea94350a" +git-tree-sha1 = "aafe89dfde54011993c4029d3be3e037fd63db07" uuid = "62b44479-cb7b-5706-934f-f13b2eb2e645" -version = "8.6.0+3" +version = "8.6.0+5" [[Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -227,9 +227,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -371,9 +371,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -389,9 +389,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -424,10 +424,10 @@ uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" [[Flux]] -deps = ["Adapt", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "OneHotArrays", "Optimisers", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "Zygote"] -git-tree-sha1 = "4ff3a1d7b0dd38f2fc38e813bc801f817639c1f2" +deps = ["Adapt", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "Zygote", "cuDNN"] +git-tree-sha1 = "e657a9aad824de4211606f113edd0b50d5e1f6db" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.13.13" +version = "0.13.14" [[FoldsThreads]] deps = ["Accessors", "FunctionWrappers", "InitialValues", "SplittablesBase", "Transducers"] @@ -506,9 +506,9 @@ version = "0.1.4" [[GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "95185985a5d2388c6d0fedb06181ad4ddd40e0cb" +git-tree-sha1 = "19d693666a304e8c371798f4900f7435558c7cde" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.17.2" +version = "0.17.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] @@ -1013,9 +1013,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1046,9 +1046,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[Preferences]] deps = ["TOML"] @@ -1187,9 +1187,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1202,15 +1202,15 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" +git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.88.0" +version = "1.90.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" +git-tree-sha1 = "e61e48ef909375203092a6e83508c8416df55a83" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.22" +version = "0.2.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1219,9 +1219,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1404,10 +1404,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils"] -git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.0.1" +version = "1.1.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1605,10 +1605,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "e1af683167eea952684188f5e1e29b9cabc2e5f9" +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SnoopPrecompile", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "5eb05dfdc66e6e7eeb5f390b3a3e7eb6e10c6b62" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.55" +version = "0.6.56" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml index 6d046d3c7..0c149d3e0 100644 --- a/tutorials/04-hidden-markov-model/Manifest.toml +++ b/tutorials/04-hidden-markov-model/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -209,9 +209,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -299,9 +299,9 @@ version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -359,9 +359,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -377,9 +377,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +945,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -978,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[Preferences]] deps = ["TOML"] @@ -1096,9 +1096,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1111,15 +1111,15 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" +git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.88.0" +version = "1.90.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" +git-tree-sha1 = "e61e48ef909375203092a6e83508c8416df55a83" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.22" +version = "0.2.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1128,9 +1128,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[SentinelArrays]] deps = ["Dates", "Random"] @@ -1325,10 +1325,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils"] -git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.0.1" +version = "1.1.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml index 50d00564e..9c26c7e44 100644 --- a/tutorials/05-linear-regression/Manifest.toml +++ b/tutorials/05-linear-regression/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -81,9 +81,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -227,9 +227,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -329,9 +329,9 @@ version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -389,9 +389,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -407,9 +407,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -923,9 +923,9 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[Mocking]] deps = ["Compat", "ExprTools"] -git-tree-sha1 = "c272302b22479a24d1cf48c114ad702933414f80" +git-tree-sha1 = "782e258e80d68a73d8c916e55f8ced1de00c2cea" uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.5" +version = "0.7.6" [[MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" @@ -1046,9 +1046,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1079,9 +1079,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1220,9 +1220,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1235,15 +1235,15 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" +git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.88.0" +version = "1.90.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" +git-tree-sha1 = "e61e48ef909375203092a6e83508c8416df55a83" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.22" +version = "0.2.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1252,9 +1252,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[SentinelArrays]] deps = ["Dates", "Random"] @@ -1477,10 +1477,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils"] -git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.0.1" +version = "1.1.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml index 544845d8a..2a7c7f2e3 100644 --- a/tutorials/06-infinite-mixture-model/Manifest.toml +++ b/tutorials/06-infinite-mixture-model/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -63,9 +63,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -191,9 +191,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -329,9 +329,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -347,9 +347,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -894,9 +894,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -927,9 +927,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[Preferences]] deps = ["TOML"] @@ -1045,9 +1045,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1060,15 +1060,15 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" +git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.88.0" +version = "1.90.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" +git-tree-sha1 = "e61e48ef909375203092a6e83508c8416df55a83" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.22" +version = "0.2.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1077,9 +1077,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1256,10 +1256,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils"] -git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.0.1" +version = "1.1.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml index fa5c5c544..2f1d5f154 100644 --- a/tutorials/07-poisson-regression/Manifest.toml +++ b/tutorials/07-poisson-regression/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -86,10 +86,10 @@ uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" version = "0.1.29" [[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" +deps = ["ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] +git-tree-sha1 = "01a9f8e6cfc2bfdd01d333f70b8014a04893103c" uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +version = "0.1.4" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -228,9 +228,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -324,9 +324,9 @@ version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -384,9 +384,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -402,9 +402,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -901,9 +901,9 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[Mocking]] deps = ["Compat", "ExprTools"] -git-tree-sha1 = "c272302b22479a24d1cf48c114ad702933414f80" +git-tree-sha1 = "782e258e80d68a73d8c916e55f8ced1de00c2cea" uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.5" +version = "0.7.6" [[MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" @@ -1012,9 +1012,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1045,9 +1045,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1181,9 +1181,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1207,9 +1207,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[SentinelArrays]] deps = ["Dates", "Random"] diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml index 3d35425be..cfec6eb5b 100644 --- a/tutorials/08-multinomial-logistic-regression/Manifest.toml +++ b/tutorials/08-multinomial-logistic-regression/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -221,9 +221,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -317,9 +317,9 @@ version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -377,9 +377,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -395,9 +395,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -894,9 +894,9 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[Mocking]] deps = ["Compat", "ExprTools"] -git-tree-sha1 = "c272302b22479a24d1cf48c114ad702933414f80" +git-tree-sha1 = "782e258e80d68a73d8c916e55f8ced1de00c2cea" uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.5" +version = "0.7.6" [[MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" @@ -1011,9 +1011,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1044,9 +1044,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1180,9 +1180,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1195,15 +1195,15 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" +git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.88.0" +version = "1.90.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" +git-tree-sha1 = "e61e48ef909375203092a6e83508c8416df55a83" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.22" +version = "0.2.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1212,9 +1212,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[SentinelArrays]] deps = ["Dates", "Random"] @@ -1415,10 +1415,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils"] -git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.0.1" +version = "1.1.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml index 3e1029731..ee326f7d4 100644 --- a/tutorials/09-variational-inference/Manifest.toml +++ b/tutorials/09-variational-inference/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -81,9 +81,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -92,10 +92,10 @@ uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" version = "0.1.29" [[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" +deps = ["ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] +git-tree-sha1 = "01a9f8e6cfc2bfdd01d333f70b8014a04893103c" uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +version = "0.1.4" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -181,9 +181,9 @@ version = "0.2.3+2" [[CUDNN_jll]] deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "57011df4fce448828165e566af9befa2ea94350a" +git-tree-sha1 = "aafe89dfde54011993c4029d3be3e037fd63db07" uuid = "62b44479-cb7b-5706-934f-f13b2eb2e645" -version = "8.6.0+3" +version = "8.6.0+5" [[Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -275,9 +275,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -383,9 +383,9 @@ version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -443,9 +443,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -461,9 +461,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -508,10 +508,10 @@ uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" [[Flux]] -deps = ["Adapt", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "OneHotArrays", "Optimisers", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "Zygote"] -git-tree-sha1 = "4ff3a1d7b0dd38f2fc38e813bc801f817639c1f2" +deps = ["Adapt", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "Zygote", "cuDNN"] +git-tree-sha1 = "e657a9aad824de4211606f113edd0b50d5e1f6db" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.13.13" +version = "0.13.14" [[FoldsThreads]] deps = ["Accessors", "FunctionWrappers", "InitialValues", "SplittablesBase", "Transducers"] @@ -596,9 +596,9 @@ version = "0.1.4" [[GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "95185985a5d2388c6d0fedb06181ad4ddd40e0cb" +git-tree-sha1 = "19d693666a304e8c371798f4900f7435558c7cde" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.17.2" +version = "0.17.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] @@ -1006,9 +1006,9 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[Mocking]] deps = ["Compat", "ExprTools"] -git-tree-sha1 = "c272302b22479a24d1cf48c114ad702933414f80" +git-tree-sha1 = "782e258e80d68a73d8c916e55f8ced1de00c2cea" uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.5" +version = "0.7.6" [[MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" @@ -1135,9 +1135,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1168,9 +1168,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1321,9 +1321,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1347,9 +1347,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[SentinelArrays]] deps = ["Dates", "Random"] @@ -1431,9 +1431,9 @@ version = "0.8.4" [[StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "5589ab073f8a244d2530b36478f53806f9106002" +git-tree-sha1 = "fd5f417fd7e103c121b0a0b4a6902f03991111f4" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.2.1" +version = "1.3.0" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] @@ -1786,10 +1786,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "e1af683167eea952684188f5e1e29b9cabc2e5f9" +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SnoopPrecompile", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "5eb05dfdc66e6e7eeb5f390b3a3e7eb6e10c6b62" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.55" +version = "0.6.56" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml index 1617fc064..b5053579b 100644 --- a/tutorials/10-bayesian-differential-equations/Manifest.toml +++ b/tutorials/10-bayesian-differential-equations/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -81,9 +81,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -267,9 +267,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -340,10 +340,10 @@ uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" version = "0.1.2" [[DelayDiffEq]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "UnPack"] -git-tree-sha1 = "dde3fa2cfc91fb5d39ba2a7dc7e4383e0a6665b3" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"] +git-tree-sha1 = "6b0a1066e81289463c19410fa02b585edb371f20" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.41.0" +version = "5.41.1" [[DelimitedFiles]] deps = ["Mmap"] @@ -357,9 +357,9 @@ version = "0.4.0" [[DiffEqBase]] deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "a057a5fe2a6a05f28ef1092d5974a0c2986be23c" +git-tree-sha1 = "15a24aa2414fad34136724c4a16e556f264ddd11" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.121.1" +version = "6.122.1" [[DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] @@ -393,9 +393,9 @@ version = "7.7.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -483,9 +483,9 @@ uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" version = "1.24.0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -501,9 +501,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -617,9 +617,9 @@ version = "0.1.4" [[GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "95185985a5d2388c6d0fedb06181ad4ddd40e0cb" +git-tree-sha1 = "19d693666a304e8c371798f4900f7435558c7cde" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.17.2" +version = "0.17.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] @@ -991,9 +991,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[LinearSolve]] deps = ["ArrayInterface", "DocStringExtensions", "FastLapackInterface", "GPUArraysCore", "IterativeSolvers", "KLU", "Krylov", "KrylovKit", "LinearAlgebra", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SnoopPrecompile", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "d1fce810e9a4213607f0182cf25ffd6ce13e19b6" +git-tree-sha1 = "fd65db5fff7238ba4c0b7a61de7e81748d73fa14" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "1.37.0" +version = "1.38.0" [[LogDensityProblems]] deps = ["ArgCheck", "DocStringExtensions", "Random", "Requires", "UnPack"] @@ -1234,9 +1234,9 @@ version = "1.4.1" [[OrdinaryDiffEq]] deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SimpleNonlinearSolve", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces", "UnPack"] -git-tree-sha1 = "61d1c15e207939bd591ef81be31293c66f9f1905" +git-tree-sha1 = "d875f5fa389e8a35fb2ae8f39326cc97815d1075" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.48.2" +version = "6.49.0" [[PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1256,9 +1256,9 @@ version = "0.12.3" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1289,9 +1289,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[PoissonRandom]] deps = ["Random"] @@ -1467,9 +1467,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1493,9 +1493,9 @@ version = "0.6.38" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" +git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.88.0" +version = "1.90.0" [[SciMLNLSolve]] deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"] @@ -1505,15 +1505,15 @@ version = "0.1.3" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" +git-tree-sha1 = "e61e48ef909375203092a6e83508c8416df55a83" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.22" +version = "0.2.0" [[SciMLSensitivity]] -deps = ["Adapt", "ArrayInterface", "Cassette", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SimpleNonlinearSolve", "StaticArraysCore", "Statistics", "StochasticDiffEq", "Tracker", "Zygote", "ZygoteRules"] -git-tree-sha1 = "44461c4b1b91a2ae4d1d8e8bacf217d249204bcd" +deps = ["Adapt", "ArrayInterface", "Cassette", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SparseDiffTools", "StaticArraysCore", "Statistics", "StochasticDiffEq", "Tracker", "TruncatedStacktraces", "Zygote", "ZygoteRules"] +git-tree-sha1 = "24d68012fb4ed86e10c97b53c9ed7250a4c17d1d" uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.24.0" +version = "7.25.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1522,9 +1522,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[SentinelArrays]] deps = ["Dates", "Random"] @@ -1558,9 +1558,9 @@ version = "1.1.0" [[SimpleNonlinearSolve]] deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "Reexport", "Requires", "SciMLBase", "SnoopPrecompile", "StaticArraysCore"] -git-tree-sha1 = "326789bbaa1b65b809bd4596b74e4fc3be5af6ac" +git-tree-sha1 = "54c78ac3cc0343a16785adabe5bbf4063c737967" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.13" +version = "0.1.14" [[SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -1568,6 +1568,11 @@ git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" version = "0.9.4" +[[SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + [[SnoopPrecompile]] deps = ["Preferences"] git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" @@ -1619,9 +1624,9 @@ version = "0.8.4" [[StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "5589ab073f8a244d2530b36478f53806f9106002" +git-tree-sha1 = "fd5f417fd7e103c121b0a0b4a6902f03991111f4" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.2.1" +version = "1.3.0" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] @@ -1819,10 +1824,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils"] -git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.0.1" +version = "1.1.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1860,9 +1865,9 @@ version = "0.1.2" [[VectorizationBase]] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "952ba509a61d1ebb26381ac459c5c6e838ed43c4" +git-tree-sha1 = "a2d69abfc8b9b71a5db110f9757d0cd4a27877c0" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.60" +version = "0.21.61" [[VertexSafeGraphs]] deps = ["Graphs"] @@ -2043,10 +2048,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "e1af683167eea952684188f5e1e29b9cabc2e5f9" +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SnoopPrecompile", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "5eb05dfdc66e6e7eeb5f390b3a3e7eb6e10c6b62" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.55" +version = "0.6.56" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml index 3b325750b..a82d8e019 100644 --- a/tutorials/11-probabilistic-pca/Manifest.toml +++ b/tutorials/11-probabilistic-pca/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -209,9 +209,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -305,9 +305,9 @@ version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -365,9 +365,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -383,9 +383,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -957,9 +957,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -990,9 +990,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1120,9 +1120,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1135,15 +1135,15 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" +git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.88.0" +version = "1.90.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" +git-tree-sha1 = "e61e48ef909375203092a6e83508c8416df55a83" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.22" +version = "0.2.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1152,9 +1152,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[SentinelArrays]] deps = ["Dates", "Random"] @@ -1349,10 +1349,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils"] -git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.0.1" +version = "1.1.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/12-gaussian-process/Manifest.toml b/tutorials/12-gaussian-process/Manifest.toml index 4234bb2b0..ce0c5c546 100644 --- a/tutorials/12-gaussian-process/Manifest.toml +++ b/tutorials/12-gaussian-process/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractGPs]] deps = ["ChainRulesCore", "Distributions", "FillArrays", "IrrationalConstants", "KernelFunctions", "LinearAlgebra", "PDMats", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"] @@ -69,9 +69,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -204,9 +204,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -294,9 +294,9 @@ version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -354,9 +354,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -372,9 +372,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -853,9 +853,9 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[Mocking]] deps = ["Compat", "ExprTools"] -git-tree-sha1 = "c272302b22479a24d1cf48c114ad702933414f80" +git-tree-sha1 = "782e258e80d68a73d8c916e55f8ced1de00c2cea" uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.5" +version = "0.7.6" [[MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" @@ -943,9 +943,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -976,9 +976,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1118,9 +1118,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1133,15 +1133,15 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" +git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.88.0" +version = "1.90.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" +git-tree-sha1 = "e61e48ef909375203092a6e83508c8416df55a83" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.22" +version = "0.2.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1150,9 +1150,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[SentinelArrays]] deps = ["Dates", "Random"] @@ -1336,10 +1336,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils"] -git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.0.1" +version = "1.1.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml index 6d046d3c7..0c149d3e0 100644 --- a/tutorials/13-seasonal-time-series/Manifest.toml +++ b/tutorials/13-seasonal-time-series/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -209,9 +209,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -299,9 +299,9 @@ version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -359,9 +359,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -377,9 +377,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +945,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -978,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[Preferences]] deps = ["TOML"] @@ -1096,9 +1096,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1111,15 +1111,15 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" +git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.88.0" +version = "1.90.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" +git-tree-sha1 = "e61e48ef909375203092a6e83508c8416df55a83" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.22" +version = "0.2.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1128,9 +1128,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[SentinelArrays]] deps = ["Dates", "Random"] @@ -1325,10 +1325,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils"] -git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.0.1" +version = "1.1.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml index e874ac3c4..3bb807c44 100644 --- a/tutorials/14-minituring/Manifest.toml +++ b/tutorials/14-minituring/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -63,9 +63,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -74,10 +74,10 @@ uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" version = "0.1.29" [[ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "93c8ba53d8d26e124a5a8d4ec914c3a16e6a0970" +deps = ["ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] +git-tree-sha1 = "01a9f8e6cfc2bfdd01d333f70b8014a04893103c" uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.3" +version = "0.1.4" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -156,9 +156,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -283,9 +283,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -477,10 +477,10 @@ deps = ["Libdl"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random", "UnPack"] -git-tree-sha1 = "05fdf369bd52030212a7c730645478dc5bcd67b6" +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.0" +version = "2.1.1" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] @@ -717,9 +717,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml index 6d046d3c7..0c149d3e0 100644 --- a/tutorials/docs-00-getting-started/Manifest.toml +++ b/tutorials/docs-00-getting-started/Manifest.toml @@ -2,9 +2,9 @@ [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.3.1" [[AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ec9c36854b569323551a6faf2f31fda15e3459a7" +git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.0" +version = "7.2.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -209,9 +209,9 @@ version = "0.3.0" [[Compat]] deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "61fdd77467a5c3ad071ef8277ac6bd6af7dd4c04" +git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.0" +version = "4.6.1" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -299,9 +299,9 @@ version = "1.13.0" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.8" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -359,9 +359,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "c1d06d129da9f55715c6c212866f5b1bddc5fa00" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" +version = "0.1.9" [[FFMPEG]] deps = ["FFMPEG_jll"] @@ -377,9 +377,9 @@ version = "4.4.2+2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -945,9 +945,9 @@ version = "0.11.17" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6f4fbcd1ad45905a5dee3f4256fabb49aa2110c6" +git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.7" +version = "2.5.8" [[Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -978,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "da1d3fb7183e38603fcdd2061c47979d91202c97" +git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.6" +version = "1.38.7" [[Preferences]] deps = ["TOML"] @@ -1096,9 +1096,9 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "9c2f5d3768804ed465f0c51540c6074ae9f63900" +git-tree-sha1 = "b45deea4566988994ebb8fb80aa438a295995a6e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.9" +version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1111,15 +1111,15 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "fe55d9f9d73fec26f64881ba8d120607c22a54b0" +git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.88.0" +version = "1.90.0" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "8419114acbba861ac49e1ab2750bae5c5eda35c4" +git-tree-sha1 = "e61e48ef909375203092a6e83508c8416df55a83" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.1.22" +version = "0.2.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1128,9 +1128,9 @@ version = "3.0.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.0" [[SentinelArrays]] deps = ["Dates", "Random"] @@ -1325,10 +1325,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils"] -git-tree-sha1 = "47b1c66a0a4f98312e667992fb9cf7611eaf1c97" +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.0.1" +version = "1.1.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] From a76354be4889ee1795e7b9182cec624236e13290 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Sat, 18 Mar 2023 15:02:32 +0100 Subject: [PATCH 6/7] [UpdateManifests.yml] Update manifest files (#387) * Update manifest files * Fix Manifest file of introduction --------- Co-authored-by: yebai Co-authored-by: David Widmann --- tutorials/00-introduction/Manifest.toml | 62 +++++----- .../01-gaussian-mixture-model/Manifest.toml | 62 +++++----- .../02-logistic-regression/Manifest.toml | 56 ++++----- .../03-bayesian-neural-network/Manifest.toml | 70 ++++++------ .../04-hidden-markov-model/Manifest.toml | 62 +++++----- tutorials/05-linear-regression/Manifest.toml | 70 ++++++------ .../06-infinite-mixture-model/Manifest.toml | 62 +++++----- tutorials/07-poisson-regression/Manifest.toml | 56 ++++----- .../Manifest.toml | 62 +++++----- .../09-variational-inference/Manifest.toml | 72 ++++++------ .../Manifest.toml | 108 +++++++++--------- tutorials/11-probabilistic-pca/Manifest.toml | 62 +++++----- tutorials/12-gaussian-process/Manifest.toml | 62 +++++----- .../13-seasonal-time-series/Manifest.toml | 62 +++++----- tutorials/14-minituring/Manifest.toml | 40 +++---- .../docs-00-getting-started/Manifest.toml | 62 +++++----- 16 files changed, 515 insertions(+), 515 deletions(-) diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml index 0c149d3e0..4ff2c1ab6 100644 --- a/tutorials/00-introduction/Manifest.toml +++ b/tutorials/00-introduction/Manifest.toml @@ -110,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -389,9 +389,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.13.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -464,15 +464,15 @@ version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -566,14 +566,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -819,9 +819,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -978,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[Preferences]] deps = ["TOML"] @@ -990,9 +990,9 @@ version = "1.3.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -1018,9 +1018,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1111,9 +1111,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" +git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.90.0" +version = "1.91.1" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1195,9 +1195,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1245,9 +1245,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1277,9 +1277,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] @@ -1325,10 +1325,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.1.0" +version = "1.2.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml index 0c149d3e0..4ff2c1ab6 100644 --- a/tutorials/01-gaussian-mixture-model/Manifest.toml +++ b/tutorials/01-gaussian-mixture-model/Manifest.toml @@ -110,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -389,9 +389,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.13.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -464,15 +464,15 @@ version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -566,14 +566,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -819,9 +819,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -978,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[Preferences]] deps = ["TOML"] @@ -990,9 +990,9 @@ version = "1.3.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -1018,9 +1018,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1111,9 +1111,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" +git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.90.0" +version = "1.91.1" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1195,9 +1195,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1245,9 +1245,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1277,9 +1277,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] @@ -1325,10 +1325,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.1.0" +version = "1.2.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml index 2f1d5f154..1baf6b760 100644 --- a/tutorials/02-logistic-regression/Manifest.toml +++ b/tutorials/02-logistic-regression/Manifest.toml @@ -122,9 +122,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -495,9 +495,9 @@ version = "3.3.8+0" [[GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "884477b9886a52a84378275737e2823a5c98e349" +git-tree-sha1 = "cd3e314957dc11c4c905d54d1f5a65c979e4748a" uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.8.1" +version = "1.8.2" [[GPUArraysCore]] deps = ["Adapt"] @@ -507,15 +507,15 @@ version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -615,14 +615,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -886,9 +886,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -1045,9 +1045,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1063,9 +1063,9 @@ version = "1.3.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -1091,9 +1091,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1274,9 +1274,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1313,9 +1313,9 @@ version = "1.3.0" [[StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "a5e15f27abd2692ccb61a99e0854dfb7d48017db" +git-tree-sha1 = "06a230063087c11910e9bbd17ccbf5af792a27a4" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.6.33" +version = "0.7.0" [[StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] @@ -1330,9 +1330,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1356,9 +1356,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml index f55b487bb..f14cd5d92 100644 --- a/tutorials/03-bayesian-neural-network/Manifest.toml +++ b/tutorials/03-bayesian-neural-network/Manifest.toml @@ -110,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -413,9 +413,9 @@ version = "0.1.1" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.13.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -494,9 +494,9 @@ version = "3.3.8+0" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "a28f752ffab0ccd6660fc7af5ad1c9ad176f45f7" +git-tree-sha1 = "28231bc5bee6672747be0313dc349c08f42942f6" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.6.3" +version = "8.6.4" [[GPUArraysCore]] deps = ["Adapt"] @@ -512,15 +512,15 @@ version = "0.17.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -614,14 +614,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -896,9 +896,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -1046,9 +1046,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[Preferences]] deps = ["TOML"] @@ -1063,9 +1063,9 @@ version = "0.2.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -1091,9 +1091,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1202,9 +1202,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" +git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.90.0" +version = "1.91.1" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1286,9 +1286,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1330,9 +1330,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1356,9 +1356,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] @@ -1404,10 +1404,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.1.0" +version = "1.2.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1606,9 +1606,9 @@ version = "1.5.4+0" [[Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SnoopPrecompile", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "5eb05dfdc66e6e7eeb5f390b3a3e7eb6e10c6b62" +git-tree-sha1 = "4df8f470806a45a8630ac8f597304821dc8e8838" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.56" +version = "0.6.59" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml index 0c149d3e0..4ff2c1ab6 100644 --- a/tutorials/04-hidden-markov-model/Manifest.toml +++ b/tutorials/04-hidden-markov-model/Manifest.toml @@ -110,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -389,9 +389,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.13.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -464,15 +464,15 @@ version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -566,14 +566,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -819,9 +819,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -978,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[Preferences]] deps = ["TOML"] @@ -990,9 +990,9 @@ version = "1.3.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -1018,9 +1018,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1111,9 +1111,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" +git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.90.0" +version = "1.91.1" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1195,9 +1195,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1245,9 +1245,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1277,9 +1277,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] @@ -1325,10 +1325,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.1.0" +version = "1.2.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml index 9c26c7e44..a0d9d5147 100644 --- a/tutorials/05-linear-regression/Manifest.toml +++ b/tutorials/05-linear-regression/Manifest.toml @@ -116,9 +116,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -443,9 +443,9 @@ version = "0.9.20" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.13.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -518,9 +518,9 @@ version = "3.3.8+0" [[GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "884477b9886a52a84378275737e2823a5c98e349" +git-tree-sha1 = "cd3e314957dc11c4c905d54d1f5a65c979e4748a" uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.8.1" +version = "1.8.2" [[GPUArraysCore]] deps = ["Adapt"] @@ -530,15 +530,15 @@ version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -638,14 +638,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -908,9 +908,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -1079,9 +1079,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1102,9 +1102,9 @@ version = "0.2.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -1130,9 +1130,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1235,9 +1235,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" +git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.90.0" +version = "1.91.1" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1335,9 +1335,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1374,9 +1374,9 @@ version = "1.3.0" [[StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "a5e15f27abd2692ccb61a99e0854dfb7d48017db" +git-tree-sha1 = "06a230063087c11910e9bbd17ccbf5af792a27a4" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.6.33" +version = "0.7.0" [[StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] @@ -1391,9 +1391,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1423,9 +1423,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] @@ -1477,10 +1477,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.1.0" +version = "1.2.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml index 2a7c7f2e3..5027be7e1 100644 --- a/tutorials/06-infinite-mixture-model/Manifest.toml +++ b/tutorials/06-infinite-mixture-model/Manifest.toml @@ -98,9 +98,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -359,9 +359,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.13.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -434,15 +434,15 @@ version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -536,14 +536,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -789,9 +789,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -927,9 +927,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[Preferences]] deps = ["TOML"] @@ -939,9 +939,9 @@ version = "1.3.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -967,9 +967,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1060,9 +1060,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" +git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.90.0" +version = "1.91.1" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1138,9 +1138,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1182,9 +1182,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1208,9 +1208,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] @@ -1256,10 +1256,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.1.0" +version = "1.2.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml index 2f1d5f154..1baf6b760 100644 --- a/tutorials/07-poisson-regression/Manifest.toml +++ b/tutorials/07-poisson-regression/Manifest.toml @@ -122,9 +122,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -495,9 +495,9 @@ version = "3.3.8+0" [[GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "884477b9886a52a84378275737e2823a5c98e349" +git-tree-sha1 = "cd3e314957dc11c4c905d54d1f5a65c979e4748a" uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.8.1" +version = "1.8.2" [[GPUArraysCore]] deps = ["Adapt"] @@ -507,15 +507,15 @@ version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -615,14 +615,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -886,9 +886,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -1045,9 +1045,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1063,9 +1063,9 @@ version = "1.3.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -1091,9 +1091,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1274,9 +1274,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1313,9 +1313,9 @@ version = "1.3.0" [[StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "a5e15f27abd2692ccb61a99e0854dfb7d48017db" +git-tree-sha1 = "06a230063087c11910e9bbd17ccbf5af792a27a4" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.6.33" +version = "0.7.0" [[StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] @@ -1330,9 +1330,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1356,9 +1356,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml index cfec6eb5b..9d8a58b89 100644 --- a/tutorials/08-multinomial-logistic-regression/Manifest.toml +++ b/tutorials/08-multinomial-logistic-regression/Manifest.toml @@ -110,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -419,9 +419,9 @@ version = "0.9.20" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.13.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -494,15 +494,15 @@ version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -602,14 +602,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -879,9 +879,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -1044,9 +1044,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1062,9 +1062,9 @@ version = "1.3.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -1090,9 +1090,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1195,9 +1195,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" +git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.90.0" +version = "1.91.1" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1279,9 +1279,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1329,9 +1329,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1361,9 +1361,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] @@ -1415,10 +1415,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.1.0" +version = "1.2.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml index ee326f7d4..3bc2bde8c 100644 --- a/tutorials/09-variational-inference/Manifest.toml +++ b/tutorials/09-variational-inference/Manifest.toml @@ -134,9 +134,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -497,9 +497,9 @@ version = "0.9.20" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.13.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -578,15 +578,15 @@ version = "3.3.8+0" [[GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "884477b9886a52a84378275737e2823a5c98e349" +git-tree-sha1 = "cd3e314957dc11c4c905d54d1f5a65c979e4748a" uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.8.1" +version = "1.8.2" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "a28f752ffab0ccd6660fc7af5ad1c9ad176f45f7" +git-tree-sha1 = "28231bc5bee6672747be0313dc349c08f42942f6" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.6.3" +version = "8.6.4" [[GPUArraysCore]] deps = ["Adapt"] @@ -602,15 +602,15 @@ version = "0.17.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -715,14 +715,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -991,9 +991,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -1168,9 +1168,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1191,9 +1191,9 @@ version = "0.2.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -1219,9 +1219,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1425,9 +1425,9 @@ version = "0.1.15" [[Static]] deps = ["IfElse"] -git-tree-sha1 = "d0435ba43ab5ad1cbb5f0d286ca4ba67029ed3ee" +git-tree-sha1 = "08be5ee09a7632c32695d954a602df96a877bf0d" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.4" +version = "0.8.6" [[StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "Static", "SuiteSparse"] @@ -1437,9 +1437,9 @@ version = "1.3.0" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1476,9 +1476,9 @@ version = "1.3.0" [[StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "a5e15f27abd2692ccb61a99e0854dfb7d48017db" +git-tree-sha1 = "06a230063087c11910e9bbd17ccbf5af792a27a4" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.6.33" +version = "0.7.0" [[StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] @@ -1493,9 +1493,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1519,9 +1519,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] @@ -1787,9 +1787,9 @@ version = "1.5.4+0" [[Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SnoopPrecompile", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "5eb05dfdc66e6e7eeb5f390b3a3e7eb6e10c6b62" +git-tree-sha1 = "4df8f470806a45a8630ac8f597304821dc8e8838" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.56" +version = "0.6.59" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml index b5053579b..52eb69dd5 100644 --- a/tutorials/10-bayesian-differential-equations/Manifest.toml +++ b/tutorials/10-bayesian-differential-equations/Manifest.toml @@ -114,9 +114,9 @@ version = "0.4.6" [[BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "SnoopPrecompile", "SparseArrays"] -git-tree-sha1 = "ee75410471c18f40d57eb53840bc705a74566f23" +git-tree-sha1 = "04f8147bbf7ea9a72f957c9b4095909df3ab21b1" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "0.17.16" +version = "0.17.17" [[BangBang]] deps = ["Compat", "ConstructionBase", "Future", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables", "ZygoteRules"] @@ -134,9 +134,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -341,9 +341,9 @@ version = "0.1.2" [[DelayDiffEq]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"] -git-tree-sha1 = "6b0a1066e81289463c19410fa02b585edb371f20" +git-tree-sha1 = "89f3fbfe78f9d116d1ed0721d65b0b2cf9b36169" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.41.1" +version = "5.42.0" [[DelimitedFiles]] deps = ["Mmap"] @@ -530,9 +530,9 @@ version = "1.2.9" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.13.8" [[FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"] @@ -605,9 +605,9 @@ version = "3.3.8+0" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "a28f752ffab0ccd6660fc7af5ad1c9ad176f45f7" +git-tree-sha1 = "28231bc5bee6672747be0313dc349c08f42942f6" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.6.3" +version = "8.6.4" [[GPUArraysCore]] deps = ["Adapt"] @@ -623,15 +623,15 @@ version = "0.17.3" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[GenericSchur]] deps = ["LinearAlgebra", "Printf"] @@ -753,14 +753,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -804,9 +804,9 @@ version = "2.1.91+0" [[JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"] -git-tree-sha1 = "7af8d30e281ce558807917b69ba16575d05f412b" +git-tree-sha1 = "341cb268f83a2d214f12ba214489fb8fde2e3c54" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.5.1" +version = "9.6.0" [[KLU]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] @@ -1083,9 +1083,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -1233,10 +1233,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.4.1" [[OrdinaryDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SimpleNonlinearSolve", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces", "UnPack"] -git-tree-sha1 = "d875f5fa389e8a35fb2ae8f39326cc97815d1075" +deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SimpleNonlinearSolve", "SimpleUnPack", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] +git-tree-sha1 = "f66680b8202384c6e698ea4ec90e40c26ece1c57" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.49.0" +version = "6.49.1" [[PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1289,15 +1289,15 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[PoissonRandom]] deps = ["Random"] -git-tree-sha1 = "45f9da1ceee5078267eb273d065e8aa2f2515790" +git-tree-sha1 = "a0f1159c33f846aa77c3f30ebbc69795e5327152" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" -version = "0.4.3" +version = "0.4.4" [[Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] @@ -1331,9 +1331,9 @@ version = "1.3.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -1359,9 +1359,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1493,9 +1493,9 @@ version = "0.6.38" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" +git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.90.0" +version = "1.91.1" [[SciMLNLSolve]] deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"] @@ -1618,9 +1618,9 @@ version = "0.1.15" [[Static]] deps = ["IfElse"] -git-tree-sha1 = "d0435ba43ab5ad1cbb5f0d286ca4ba67029ed3ee" +git-tree-sha1 = "08be5ee09a7632c32695d954a602df96a877bf0d" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.4" +version = "0.8.6" [[StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "Static", "SuiteSparse"] @@ -1630,9 +1630,9 @@ version = "1.3.0" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1675,9 +1675,9 @@ version = "0.15.4" [[SteadyStateDiffEq]] deps = ["DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "NLsolve", "Reexport", "SciMLBase"] -git-tree-sha1 = "8998e426c1d49ef92d4c60cc81acb90ddf92c610" +git-tree-sha1 = "04a7d0bb1c824857ba0bb0c17bc5950dccbfdd5d" uuid = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f" -version = "1.13.0" +version = "1.14.0" [[StochasticDiffEq]] deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] @@ -1687,9 +1687,9 @@ version = "6.58.0" [[StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "2842f1dbd12d59f2728ba79f4002cd6b61808f8b" +git-tree-sha1 = "f859ab67ca232b777a03a6cee588c1c15f7ec40a" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.4.8" +version = "0.4.9" [[StringManipulation]] git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123" @@ -1698,9 +1698,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[StructIO]] deps = ["Test"] @@ -1718,9 +1718,9 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" [[Sundials]] deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "Reexport", "SciMLBase", "SnoopPrecompile", "SparseArrays", "Sundials_jll"] -git-tree-sha1 = "c033830e3c6fb4260243fc907b1e7e93421e7ae8" +git-tree-sha1 = "a4e8491c163d74fb92905c6443e59558f5e609a4" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "4.15.1" +version = "4.16.0" [[Sundials_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "OpenBLAS_jll", "Pkg", "SuiteSparse_jll"] @@ -1752,9 +1752,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] @@ -1824,10 +1824,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.1.0" +version = "1.2.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -2049,9 +2049,9 @@ version = "1.5.4+0" [[Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SnoopPrecompile", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "5eb05dfdc66e6e7eeb5f390b3a3e7eb6e10c6b62" +git-tree-sha1 = "4df8f470806a45a8630ac8f597304821dc8e8838" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.56" +version = "0.6.59" [[ZygoteRules]] deps = ["MacroTools"] diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml index a82d8e019..4af887849 100644 --- a/tutorials/11-probabilistic-pca/Manifest.toml +++ b/tutorials/11-probabilistic-pca/Manifest.toml @@ -110,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -395,9 +395,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.13.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -470,15 +470,15 @@ version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -578,14 +578,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -831,9 +831,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -990,9 +990,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1008,9 +1008,9 @@ version = "1.3.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -1036,9 +1036,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1135,9 +1135,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" +git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.90.0" +version = "1.91.1" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1219,9 +1219,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1269,9 +1269,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1301,9 +1301,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] @@ -1349,10 +1349,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.1.0" +version = "1.2.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/12-gaussian-process/Manifest.toml b/tutorials/12-gaussian-process/Manifest.toml index ce0c5c546..36d88b0d5 100644 --- a/tutorials/12-gaussian-process/Manifest.toml +++ b/tutorials/12-gaussian-process/Manifest.toml @@ -104,9 +104,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -396,9 +396,9 @@ version = "0.9.20" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.13.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -471,15 +471,15 @@ version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -579,14 +579,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -838,9 +838,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -976,9 +976,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -994,9 +994,9 @@ version = "1.3.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -1022,9 +1022,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1133,9 +1133,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" +git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.90.0" +version = "1.91.1" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1212,9 +1212,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1256,9 +1256,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1282,9 +1282,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] @@ -1336,10 +1336,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.1.0" +version = "1.2.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml index 0c149d3e0..4ff2c1ab6 100644 --- a/tutorials/13-seasonal-time-series/Manifest.toml +++ b/tutorials/13-seasonal-time-series/Manifest.toml @@ -110,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -389,9 +389,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.13.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -464,15 +464,15 @@ version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -566,14 +566,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -819,9 +819,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -978,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[Preferences]] deps = ["TOML"] @@ -990,9 +990,9 @@ version = "1.3.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -1018,9 +1018,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1111,9 +1111,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" +git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.90.0" +version = "1.91.1" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1195,9 +1195,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1245,9 +1245,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1277,9 +1277,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] @@ -1325,10 +1325,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.1.0" +version = "1.2.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml index 3bb807c44..29e4c9fe4 100644 --- a/tutorials/14-minituring/Manifest.toml +++ b/tutorials/14-minituring/Manifest.toml @@ -110,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[Calculus]] deps = ["LinearAlgebra"] @@ -289,9 +289,9 @@ version = "0.1.9" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" +git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.5.0" +version = "1.6.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -396,14 +396,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -542,9 +542,9 @@ uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -629,9 +629,9 @@ version = "1.3.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -651,9 +651,9 @@ version = "1.7.2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -787,9 +787,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -831,9 +831,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -851,9 +851,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml index 0c149d3e0..4ff2c1ab6 100644 --- a/tutorials/docs-00-getting-started/Manifest.toml +++ b/tutorials/docs-00-getting-started/Manifest.toml @@ -110,9 +110,9 @@ version = "0.1.1" [[Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "4f8d8df1f690c44e46464266ec928aaa5aabb299" +git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.10.7" +version = "0.10.8" [[BitFlags]] git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" @@ -389,9 +389,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "d3ba08ab64bdfd27234d3f61956c966266757fe6" +git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.7" +version = "0.13.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -464,15 +464,15 @@ version = "0.1.4" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "660b2ea2ec2b010bb02823c6d0ff6afd9bdc5c16" +git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.7" +version = "0.71.8" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "d5e1fd17ac7f3aa4c5287a61ee28d4f8b8e98873" +git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.7+0" +version = "0.71.8+0" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -566,14 +566,14 @@ uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.8" [[InvertedIndices]] -git-tree-sha1 = "82aec7a3dd64f4d9584659dc0b62ef7db2ef3e19" +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.2.0" +version = "1.3.0" [[IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" @@ -819,9 +819,9 @@ version = "0.3.2" [[MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "4d5917a26ca33c66c8e5ca3247bd163624d35493" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.3" +version = "0.1.4" [[Missings]] deps = ["DataAPI"] @@ -978,9 +978,9 @@ version = "1.3.4" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cfcd24ebf8b066b4f8e42bade600c8558212ed83" +git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.7" +version = "1.38.8" [[Preferences]] deps = ["TOML"] @@ -990,9 +990,9 @@ version = "1.3.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "96f6db03ab535bdb901300f88335257b0018689d" +git-tree-sha1 = "548793c7859e28ef026dba514752275ee871169f" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.2" +version = "2.2.3" [[Printf]] deps = ["Unicode"] @@ -1018,9 +1018,9 @@ version = "5.15.3+2" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "786efa36b7eff813723c4849c90456609cf06661" +git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.8.1" +version = "2.8.2" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1111,9 +1111,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "c5876dce653513953e145316f1406e8507ec5765" +git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.90.0" +version = "1.91.1" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1195,9 +1195,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "2d7d9e1ddadc8407ffd460e24218e37ef52dd9a3" +git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.16" +version = "1.5.17" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1245,9 +1245,9 @@ version = "0.3.0" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "b03a3b745aa49b566f128977a7dd1be8711c5e71" +git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.14" +version = "0.6.15" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1277,9 +1277,9 @@ version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "c79322d36826aa2f4fd8ecfa96ddb47b174ac78d" +git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.10.0" +version = "1.10.1" [[Tar]] deps = ["ArgTools", "SHA"] @@ -1325,10 +1325,10 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.6" [[TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "f7057ba94e63b269125c0db75dcdef913d956351" +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.1.0" +version = "1.2.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] From c144876d4fb88eddc301e1df164aa6cfbb761e59 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Sat, 25 Mar 2023 07:33:14 +0100 Subject: [PATCH 7/7] Update manifest files (#388) Co-authored-by: yebai --- tutorials/00-introduction/Manifest.toml | 130 ++++++------------ .../01-gaussian-mixture-model/Manifest.toml | 42 +++--- .../02-logistic-regression/Manifest.toml | 30 ++-- .../03-bayesian-neural-network/Manifest.toml | 105 ++++++++------ .../04-hidden-markov-model/Manifest.toml | 42 +++--- tutorials/05-linear-regression/Manifest.toml | 53 ++++--- .../06-infinite-mixture-model/Manifest.toml | 38 ++--- tutorials/07-poisson-regression/Manifest.toml | 30 ++-- .../Manifest.toml | 42 +++--- .../09-variational-inference/Manifest.toml | 101 ++++++++------ .../Manifest.toml | 94 ++++++------- tutorials/11-probabilistic-pca/Manifest.toml | 42 +++--- tutorials/12-gaussian-process/Manifest.toml | 38 ++--- .../13-seasonal-time-series/Manifest.toml | 42 +++--- tutorials/14-minituring/Manifest.toml | 26 ++-- .../docs-00-getting-started/Manifest.toml | 42 +++--- 16 files changed, 444 insertions(+), 453 deletions(-) diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml index 4ff2c1ab6..a51d27f01 100644 --- a/tutorials/00-introduction/Manifest.toml +++ b/tutorials/00-introduction/Manifest.toml @@ -75,9 +75,21 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" + +[[ArrayInterfaceCore]] +deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" +uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" +version = "0.1.29" + +[[ArrayInterfaceStaticArraysCore]] +deps = ["ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] +git-tree-sha1 = "01a9f8e6cfc2bfdd01d333f70b8014a04893103c" +uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" +version = "0.1.4" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -114,11 +126,6 @@ git-tree-sha1 = "1234b03e94938e6f2b14834dfd3ef45698d5e14f" uuid = "76274a88-744f-5084-9051-94815aaf08c4" version = "0.10.8" -[[BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" @@ -157,15 +164,9 @@ version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" +git-tree-sha1 = "7ebbd653f74504447f1c33b91cd706a69a1b189f" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.3" - -[[CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "9c209fb7536406834aa938fb149964b985de6c83" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.1" +version = "0.14.4" [[ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "Random", "SnoopPrecompile"] @@ -321,9 +322,9 @@ version = "0.6.43" [[DocStringExtensions]] deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "b19534d1895d702889b219c382a6e18010797f0b" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.8.6" [[Downloads]] deps = ["ArgTools", "LibCURL", "NetworkOptions"] @@ -389,9 +390,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" +git-tree-sha1 = "deed294cde3de20ae0b2e0355a6c4e1c6a5ceffc" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.8" +version = "0.12.8" [[FixedPointNumbers]] deps = ["Statistics"] @@ -498,10 +499,10 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[HTTP]] -deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "37e4657cd56b11abe3d10cd4a1ec5fbdb4180263" +deps = ["Base64", "Dates", "IniFile", "MbedTLS", "Sockets"] +git-tree-sha1 = "c7ec02c4c6a039a98a15f955462cd7aea5df4508" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.7.4" +version = "0.8.19" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -517,9 +518,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -649,12 +650,6 @@ git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.18" -[[Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -855,9 +850,9 @@ version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -898,12 +893,6 @@ uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -[[OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "6503b77492fd7fcb9379bf73cd31035670e3c509" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.3.3" - [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" @@ -1060,10 +1049,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] -git-tree-sha1 = "3dcb2a98436389c0aac964428a5fa099118944de" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "Tables", "ZygoteRules"] +git-tree-sha1 = "a5ce741acddc02f0d4fc6505463ca89697d7fb23" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.38.0" +version = "2.32.3" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1102,24 +1091,18 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] -deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" +deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "Tables"] +git-tree-sha1 = "fe89a8113ea445bcff9ee570077830674babb534" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.91.1" - -[[SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "e61e48ef909375203092a6e83508c8416df55a83" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.2.0" +version = "1.81.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1157,11 +1140,6 @@ git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" version = "1.0.3" -[[SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - [[SnoopPrecompile]] deps = ["Preferences"] git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" @@ -1195,9 +1173,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1253,12 +1231,6 @@ version = "0.6.15" deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" -[[SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - [[TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" @@ -1307,40 +1279,18 @@ git-tree-sha1 = "77817887c4b414b9c6914c61273910e3234eb21c" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" version = "0.2.23" -[[TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "94f38103c984f89cf77c402f2a68dbd870f8165f" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.11" - [[Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] git-tree-sha1 = "c42fa452a60f022e9e087823b47e5a5f8adc53d5" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" version = "0.4.75" -[[Tricks]] -git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.6" - -[[TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.2.0" - [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] git-tree-sha1 = "8a40377bcc4b054ebdc8f680e96cd73a4a6fe2e6" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" version = "0.22.0" -[[URIs]] -git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.2" - [[UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" @@ -1537,10 +1487,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml index 4ff2c1ab6..9b06ca6c8 100644 --- a/tutorials/01-gaussian-mixture-model/Manifest.toml +++ b/tutorials/01-gaussian-mixture-model/Manifest.toml @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -157,9 +157,9 @@ version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" +git-tree-sha1 = "7ebbd653f74504447f1c33b91cd706a69a1b189f" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.3" +version = "0.14.4" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -389,9 +389,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" +git-tree-sha1 = "0ba171480d51567ba337e5eea4e68a8231b7a2c3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.8" +version = "0.13.10" [[FixedPointNumbers]] deps = ["Statistics"] @@ -517,9 +517,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -855,9 +855,9 @@ version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1102,18 +1102,18 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" +git-tree-sha1 = "6bb55eff20ee05151b5cb4e777691fabae1524a3" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.91.1" +version = "1.91.3" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1195,9 +1195,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1326,9 +1326,9 @@ version = "0.1.6" [[TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" +git-tree-sha1 = "7bc1632a4eafbe9bd94cf1a784a9a4eb5e040a91" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.2.0" +version = "1.3.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1537,10 +1537,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml index 1baf6b760..a3abcbe04 100644 --- a/tutorials/02-logistic-regression/Manifest.toml +++ b/tutorials/02-logistic-regression/Manifest.toml @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -176,9 +176,9 @@ version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" +git-tree-sha1 = "7ebbd653f74504447f1c33b91cd706a69a1b189f" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.3" +version = "0.14.4" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -560,9 +560,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -928,9 +928,9 @@ version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1187,9 +1187,9 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -1274,9 +1274,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1617,10 +1617,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml index f14cd5d92..561cc5447 100644 --- a/tutorials/03-bayesian-neural-network/Manifest.toml +++ b/tutorials/03-bayesian-neural-network/Manifest.toml @@ -69,13 +69,19 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +[[Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + [[AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" @@ -126,16 +132,16 @@ uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.4.2" [[CUDA]] -deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions"] -git-tree-sha1 = "edff14c60784c8f7191a62a23b15a421185bc8a8" +deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "2dbdec5c010bed6c6b1e0e5fd213bfe47925abc3" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "4.0.1" +version = "4.1.0" [[CUDA_Driver_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "75d7896d1ec079ef10d3aee8f3668c11354c03a1" +git-tree-sha1 = "a1efe2bfb96c10906dede10f1580aca0ae6d092f" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.2.0+0" +version = "0.4.0+2" [[CUDA_Runtime_Discovery]] deps = ["Libdl"] @@ -144,16 +150,16 @@ uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" version = "0.1.1" [[CUDA_Runtime_jll]] -deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "d3e6ccd30f84936c1a3a53d622d85d7d3f9b9486" +deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "96e06a24c89a9945c57278fd09fb717f71476d87" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.2.3+2" +version = "0.4.0+2" [[CUDNN_jll]] -deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "aafe89dfde54011993c4029d3be3e037fd63db07" +deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "2918fbffb50e3b7a0b9127617587afa76d4276e8" uuid = "62b44479-cb7b-5706-934f-f13b2eb2e645" -version = "8.6.0+5" +version = "8.8.1+0" [[Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -413,9 +419,9 @@ version = "0.1.1" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" +git-tree-sha1 = "0ba171480d51567ba337e5eea4e68a8231b7a2c3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.8" +version = "0.13.10" [[FixedPointNumbers]] deps = ["Statistics"] @@ -494,9 +500,9 @@ version = "3.3.8+0" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "28231bc5bee6672747be0313dc349c08f42942f6" +git-tree-sha1 = "7a2e790b1e2e6f648cfb25c4500c5de1f7b375ef" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.6.4" +version = "8.6.5" [[GPUArraysCore]] deps = ["Adapt"] @@ -506,9 +512,9 @@ version = "0.1.4" [[GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "19d693666a304e8c371798f4900f7435558c7cde" +git-tree-sha1 = "fd6431121f31fed05a5386ac88b9bb3f97fdfa69" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.17.3" +version = "0.18.0" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] @@ -565,9 +571,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -663,6 +669,12 @@ git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" version = "0.2.4" +[[KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "SnoopPrecompile", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "17d0bb94eef881b09c57967be12cca70fefb3304" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.0" + [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] git-tree-sha1 = "9816b296736292a80b9a3200eb7fbb57aaa3917a" @@ -683,15 +695,15 @@ version = "3.0.0+1" [[LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "df115c31f5c163697eede495918d8e85045c8f04" +git-tree-sha1 = "f044a2796a9e18e0531b9b3072b0019a61f264bc" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "4.16.0" +version = "4.17.1" [[LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "7718cf44439c676bc0ec66a87099f41015a522d6" +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "070e4b5b65827f82c16ae0916376cb47377aa1b5" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.16+2" +version = "0.0.18+0" [[LRUCache]] git-tree-sha1 = "d862633ef6097461037a00a13f709a62ae4bdfdd" @@ -938,9 +950,9 @@ version = "0.1.5" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1193,18 +1205,18 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" +git-tree-sha1 = "6bb55eff20ee05151b5cb4e777691fabae1524a3" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.91.1" +version = "1.91.3" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1286,9 +1298,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1405,9 +1417,9 @@ version = "0.1.6" [[TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" +git-tree-sha1 = "7bc1632a4eafbe9bd94cf1a784a9a4eb5e040a91" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.2.0" +version = "1.3.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1433,6 +1445,17 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" +[[UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "33af9d2031d0dc09e2be9a0d4beefec4466def8e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.0" + [[Unzip]] git-tree-sha1 = "34db80951901073501137bdbc3d5a8e7bbd06670" uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" @@ -1611,16 +1634,16 @@ uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" version = "0.6.59" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[cuDNN]] deps = ["CEnum", "CUDA", "CUDNN_jll"] -git-tree-sha1 = "c0ffcb38d1e8c0bbcd3dab2559cf9c369130b2f2" +git-tree-sha1 = "3aa15aba7aad5be8b9b3c1b77a9b81e3e1357280" uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" -version = "1.0.1" +version = "1.0.2" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml index 4ff2c1ab6..9b06ca6c8 100644 --- a/tutorials/04-hidden-markov-model/Manifest.toml +++ b/tutorials/04-hidden-markov-model/Manifest.toml @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -157,9 +157,9 @@ version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" +git-tree-sha1 = "7ebbd653f74504447f1c33b91cd706a69a1b189f" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.3" +version = "0.14.4" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -389,9 +389,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" +git-tree-sha1 = "0ba171480d51567ba337e5eea4e68a8231b7a2c3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.8" +version = "0.13.10" [[FixedPointNumbers]] deps = ["Statistics"] @@ -517,9 +517,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -855,9 +855,9 @@ version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1102,18 +1102,18 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" +git-tree-sha1 = "6bb55eff20ee05151b5cb4e777691fabae1524a3" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.91.1" +version = "1.91.3" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1195,9 +1195,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1326,9 +1326,9 @@ version = "0.1.6" [[TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" +git-tree-sha1 = "7bc1632a4eafbe9bd94cf1a784a9a4eb5e040a91" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.2.0" +version = "1.3.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1537,10 +1537,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml index a0d9d5147..11e4bd4c4 100644 --- a/tutorials/05-linear-regression/Manifest.toml +++ b/tutorials/05-linear-regression/Manifest.toml @@ -81,9 +81,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -132,10 +132,10 @@ uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.8+0" [[CSV]] -deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "SnoopPrecompile", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "c700cce799b51c9045473de751e9319bdd1c6e94" +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings"] +git-tree-sha1 = "c5fd7cd27ac4aed0acf4b73948f0110ff2a854b2" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.9" +version = "0.10.7" [[Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -175,9 +175,9 @@ version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" +git-tree-sha1 = "7ebbd653f74504447f1c33b91cd706a69a1b189f" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.3" +version = "0.14.4" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -443,9 +443,9 @@ version = "0.9.20" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" +git-tree-sha1 = "0ba171480d51567ba337e5eea4e68a8231b7a2c3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.8" +version = "0.13.10" [[FixedPointNumbers]] deps = ["Statistics"] @@ -583,9 +583,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -956,9 +956,9 @@ version = "0.1.5" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1226,18 +1226,18 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" +git-tree-sha1 = "6bb55eff20ee05151b5cb4e777691fabae1524a3" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.91.1" +version = "1.91.3" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1335,9 +1335,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1478,9 +1478,9 @@ version = "0.1.6" [[TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" +git-tree-sha1 = "7bc1632a4eafbe9bd94cf1a784a9a4eb5e040a91" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.2.0" +version = "1.3.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1546,11 +1546,6 @@ git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" version = "0.5.5" -[[WorkerUtilities]] -git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" -uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" -version = "1.6.1" - [[XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] git-tree-sha1 = "93c41695bc1c08c46c5899f4fe06d6ead504bb73" @@ -1700,10 +1695,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml index 5027be7e1..c77016398 100644 --- a/tutorials/06-infinite-mixture-model/Manifest.toml +++ b/tutorials/06-infinite-mixture-model/Manifest.toml @@ -63,9 +63,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -359,9 +359,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" +git-tree-sha1 = "0ba171480d51567ba337e5eea4e68a8231b7a2c3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.8" +version = "0.13.10" [[FixedPointNumbers]] deps = ["Statistics"] @@ -487,9 +487,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -819,9 +819,9 @@ version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1051,18 +1051,18 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" +git-tree-sha1 = "6bb55eff20ee05151b5cb4e777691fabae1524a3" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.91.1" +version = "1.91.3" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1138,9 +1138,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1257,9 +1257,9 @@ version = "0.1.6" [[TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" +git-tree-sha1 = "7bc1632a4eafbe9bd94cf1a784a9a4eb5e040a91" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.2.0" +version = "1.3.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1462,10 +1462,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml index 1baf6b760..a3abcbe04 100644 --- a/tutorials/07-poisson-regression/Manifest.toml +++ b/tutorials/07-poisson-regression/Manifest.toml @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -176,9 +176,9 @@ version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" +git-tree-sha1 = "7ebbd653f74504447f1c33b91cd706a69a1b189f" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.3" +version = "0.14.4" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -560,9 +560,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -928,9 +928,9 @@ version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1187,9 +1187,9 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -1274,9 +1274,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1617,10 +1617,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml index 9d8a58b89..fa0bec13a 100644 --- a/tutorials/08-multinomial-logistic-regression/Manifest.toml +++ b/tutorials/08-multinomial-logistic-regression/Manifest.toml @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -169,9 +169,9 @@ version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" +git-tree-sha1 = "7ebbd653f74504447f1c33b91cd706a69a1b189f" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.3" +version = "0.14.4" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -419,9 +419,9 @@ version = "0.9.20" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" +git-tree-sha1 = "0ba171480d51567ba337e5eea4e68a8231b7a2c3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.8" +version = "0.13.10" [[FixedPointNumbers]] deps = ["Statistics"] @@ -547,9 +547,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -921,9 +921,9 @@ version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1186,18 +1186,18 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" +git-tree-sha1 = "6bb55eff20ee05151b5cb4e777691fabae1524a3" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.91.1" +version = "1.91.3" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1279,9 +1279,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1416,9 +1416,9 @@ version = "0.1.6" [[TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" +git-tree-sha1 = "7bc1632a4eafbe9bd94cf1a784a9a4eb5e040a91" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.2.0" +version = "1.3.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1638,10 +1638,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml index 3bc2bde8c..49dd487c5 100644 --- a/tutorials/09-variational-inference/Manifest.toml +++ b/tutorials/09-variational-inference/Manifest.toml @@ -81,9 +81,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -100,6 +100,12 @@ version = "0.1.4" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +[[Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + [[AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" @@ -156,16 +162,16 @@ uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" version = "0.10.9" [[CUDA]] -deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions"] -git-tree-sha1 = "edff14c60784c8f7191a62a23b15a421185bc8a8" +deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "2dbdec5c010bed6c6b1e0e5fd213bfe47925abc3" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "4.0.1" +version = "4.1.0" [[CUDA_Driver_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "75d7896d1ec079ef10d3aee8f3668c11354c03a1" +git-tree-sha1 = "a1efe2bfb96c10906dede10f1580aca0ae6d092f" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.2.0+0" +version = "0.4.0+2" [[CUDA_Runtime_Discovery]] deps = ["Libdl"] @@ -174,16 +180,16 @@ uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" version = "0.1.1" [[CUDA_Runtime_jll]] -deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "d3e6ccd30f84936c1a3a53d622d85d7d3f9b9486" +deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "96e06a24c89a9945c57278fd09fb717f71476d87" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.2.3+2" +version = "0.4.0+2" [[CUDNN_jll]] -deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "aafe89dfde54011993c4029d3be3e037fd63db07" +deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "2918fbffb50e3b7a0b9127617587afa76d4276e8" uuid = "62b44479-cb7b-5706-934f-f13b2eb2e645" -version = "8.6.0+5" +version = "8.8.1+0" [[Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -223,9 +229,9 @@ version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" +git-tree-sha1 = "7ebbd653f74504447f1c33b91cd706a69a1b189f" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.3" +version = "0.14.4" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -497,9 +503,9 @@ version = "0.9.20" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" +git-tree-sha1 = "0ba171480d51567ba337e5eea4e68a8231b7a2c3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.8" +version = "0.13.10" [[FixedPointNumbers]] deps = ["Statistics"] @@ -584,9 +590,9 @@ version = "1.8.2" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "28231bc5bee6672747be0313dc349c08f42942f6" +git-tree-sha1 = "7a2e790b1e2e6f648cfb25c4500c5de1f7b375ef" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.6.4" +version = "8.6.5" [[GPUArraysCore]] deps = ["Adapt"] @@ -596,9 +602,9 @@ version = "0.1.4" [[GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "19d693666a304e8c371798f4900f7435558c7cde" +git-tree-sha1 = "fd6431121f31fed05a5386ac88b9bb3f97fdfa69" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.17.3" +version = "0.18.0" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] @@ -655,9 +661,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -764,6 +770,12 @@ git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" version = "0.2.4" +[[KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "SnoopPrecompile", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "17d0bb94eef881b09c57967be12cca70fefb3304" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.0" + [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] git-tree-sha1 = "9816b296736292a80b9a3200eb7fbb57aaa3917a" @@ -784,15 +796,15 @@ version = "3.0.0+1" [[LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "df115c31f5c163697eede495918d8e85045c8f04" +git-tree-sha1 = "f044a2796a9e18e0531b9b3072b0019a61f264bc" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "4.16.0" +version = "4.17.1" [[LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "7718cf44439c676bc0ec66a87099f41015a522d6" +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "070e4b5b65827f82c16ae0916376cb47377aa1b5" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.16+2" +version = "0.0.18+0" [[LRUCache]] git-tree-sha1 = "d862633ef6097461037a00a13f709a62ae4bdfdd" @@ -1045,9 +1057,9 @@ version = "0.1.5" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1327,9 +1339,9 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -1437,9 +1449,9 @@ version = "1.3.0" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1597,6 +1609,17 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" +[[UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "33af9d2031d0dc09e2be9a0d4beefec4466def8e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.0" + [[Unzip]] git-tree-sha1 = "34db80951901073501137bdbc3d5a8e7bbd06670" uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" @@ -1792,16 +1815,16 @@ uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" version = "0.6.59" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[cuDNN]] deps = ["CEnum", "CUDA", "CUDNN_jll"] -git-tree-sha1 = "c0ffcb38d1e8c0bbcd3dab2559cf9c369130b2f2" +git-tree-sha1 = "3aa15aba7aad5be8b9b3c1b77a9b81e3e1357280" uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" -version = "1.0.1" +version = "1.0.2" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml index 52eb69dd5..6c971a364 100644 --- a/tutorials/10-bayesian-differential-equations/Manifest.toml +++ b/tutorials/10-bayesian-differential-equations/Manifest.toml @@ -81,9 +81,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -215,9 +215,9 @@ version = "0.1.12" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" +git-tree-sha1 = "7ebbd653f74504447f1c33b91cd706a69a1b189f" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.3" +version = "0.14.4" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -530,15 +530,15 @@ version = "1.2.9" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" +git-tree-sha1 = "0ba171480d51567ba337e5eea4e68a8231b7a2c3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.8" +version = "0.13.10" [[FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "ed1b56934a2f7a65035976985da71b6a65b4f2cf" +git-tree-sha1 = "03fcb1c42ec905d15b305359603888ec3e65f886" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.18.0" +version = "2.19.0" [[FixedPointNumbers]] deps = ["Statistics"] @@ -605,9 +605,9 @@ version = "3.3.8+0" [[GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "28231bc5bee6672747be0313dc349c08f42942f6" +git-tree-sha1 = "7a2e790b1e2e6f648cfb25c4500c5de1f7b375ef" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.6.4" +version = "8.6.5" [[GPUArraysCore]] deps = ["Adapt"] @@ -694,9 +694,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -846,15 +846,15 @@ version = "3.0.0+1" [[LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "df115c31f5c163697eede495918d8e85045c8f04" +git-tree-sha1 = "f044a2796a9e18e0531b9b3072b0019a61f264bc" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "4.16.0" +version = "4.17.1" [[LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "7718cf44439c676bc0ec66a87099f41015a522d6" +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "070e4b5b65827f82c16ae0916376cb47377aa1b5" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.16+2" +version = "0.0.18+0" [[LRUCache]] git-tree-sha1 = "d862633ef6097461037a00a13f709a62ae4bdfdd" @@ -991,9 +991,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[LinearSolve]] deps = ["ArrayInterface", "DocStringExtensions", "FastLapackInterface", "GPUArraysCore", "IterativeSolvers", "KLU", "Krylov", "KrylovKit", "LinearAlgebra", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SnoopPrecompile", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "fd65db5fff7238ba4c0b7a61de7e81748d73fa14" +git-tree-sha1 = "efd515f4ffa96f7b4a3be2e9db9ba7dbce9a342b" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "1.38.0" +version = "1.40.0" [[LogDensityProblems]] deps = ["ArgCheck", "DocStringExtensions", "Random", "Requires", "UnPack"] @@ -1018,9 +1018,9 @@ version = "0.4.9" [[LoopVectorization]] deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDTypes", "SLEEFPirates", "SnoopPrecompile", "SpecialFunctions", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "2acf6874142d05d5d1ad49e8d3786b8cd800936d" +git-tree-sha1 = "6d878b416680b7eaf5fae71990028c982e7c8b38" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.152" +version = "0.12.153" [[MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Serialization", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] @@ -1136,9 +1136,9 @@ version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1155,10 +1155,10 @@ version = "0.4.13" uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" [[NonlinearSolve]] -deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "3f856788ba532419c07ba2e0dc37b06e5d784992" +deps = ["ArrayInterface", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "f5790fba251930ff04479ea0bad9faea6af4d352" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "1.5.0" +version = "1.5.1" [[ObjectFile]] deps = ["Reexport", "StructIO"] @@ -1234,9 +1234,9 @@ version = "1.4.1" [[OrdinaryDiffEq]] deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SimpleNonlinearSolve", "SimpleUnPack", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "f66680b8202384c6e698ea4ec90e40c26ece1c57" +git-tree-sha1 = "9fb1f72106bfa1370006b90771cfbcce6c7468b6" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.49.1" +version = "6.49.4" [[PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1473,9 +1473,9 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -1493,15 +1493,15 @@ version = "0.6.38" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" +git-tree-sha1 = "6bb55eff20ee05151b5cb4e777691fabae1524a3" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.91.1" +version = "1.91.3" [[SciMLNLSolve]] deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"] -git-tree-sha1 = "66c7f901dbcad51791136e2d90ee67240256ecde" +git-tree-sha1 = "2e1606c282fae6bd9aed4f159695774a44b9c75f" uuid = "e9a6253c-8580-4d32-9898-8661bb511710" -version = "0.1.3" +version = "0.1.4" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1511,9 +1511,9 @@ version = "0.2.0" [[SciMLSensitivity]] deps = ["Adapt", "ArrayInterface", "Cassette", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SparseDiffTools", "StaticArraysCore", "Statistics", "StochasticDiffEq", "Tracker", "TruncatedStacktraces", "Zygote", "ZygoteRules"] -git-tree-sha1 = "24d68012fb4ed86e10c97b53c9ed7250a4c17d1d" +git-tree-sha1 = "a083f968aa6538ce688cb99a498e1dea1a719d85" uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.25.0" +version = "7.27.0" [[ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1630,9 +1630,9 @@ version = "1.3.0" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1681,9 +1681,9 @@ version = "1.14.0" [[StochasticDiffEq]] deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "c6b4b802d4d830e0e958f5f2098d8dea0a935f4b" +git-tree-sha1 = "073da86200349ddf4ef8bc3e3f3acd62e1d554f7" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.58.0" +version = "6.60.0" [[StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] @@ -1825,9 +1825,9 @@ version = "0.1.6" [[TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" +git-tree-sha1 = "7bc1632a4eafbe9bd94cf1a784a9a4eb5e040a91" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.2.0" +version = "1.3.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1865,9 +1865,9 @@ version = "0.1.2" [[VectorizationBase]] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "a2d69abfc8b9b71a5db110f9757d0cd4a27877c0" +git-tree-sha1 = "a07b279148653974edd945c8c8e09af156bcb46e" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.61" +version = "0.21.62" [[VertexSafeGraphs]] deps = ["Graphs"] @@ -2054,10 +2054,10 @@ uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" version = "0.6.59" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml index 4af887849..50907e792 100644 --- a/tutorials/11-probabilistic-pca/Manifest.toml +++ b/tutorials/11-probabilistic-pca/Manifest.toml @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -157,9 +157,9 @@ version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" +git-tree-sha1 = "7ebbd653f74504447f1c33b91cd706a69a1b189f" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.3" +version = "0.14.4" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -395,9 +395,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" +git-tree-sha1 = "0ba171480d51567ba337e5eea4e68a8231b7a2c3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.8" +version = "0.13.10" [[FixedPointNumbers]] deps = ["Statistics"] @@ -523,9 +523,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -867,9 +867,9 @@ version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1126,18 +1126,18 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" +git-tree-sha1 = "6bb55eff20ee05151b5cb4e777691fabae1524a3" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.91.1" +version = "1.91.3" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1219,9 +1219,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1350,9 +1350,9 @@ version = "0.1.6" [[TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" +git-tree-sha1 = "7bc1632a4eafbe9bd94cf1a784a9a4eb5e040a91" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.2.0" +version = "1.3.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1561,10 +1561,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/12-gaussian-process/Manifest.toml b/tutorials/12-gaussian-process/Manifest.toml index 36d88b0d5..795f26967 100644 --- a/tutorials/12-gaussian-process/Manifest.toml +++ b/tutorials/12-gaussian-process/Manifest.toml @@ -69,9 +69,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -396,9 +396,9 @@ version = "0.9.20" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" +git-tree-sha1 = "0ba171480d51567ba337e5eea4e68a8231b7a2c3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.8" +version = "0.13.10" [[FixedPointNumbers]] deps = ["Statistics"] @@ -524,9 +524,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -874,9 +874,9 @@ version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1124,18 +1124,18 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" +git-tree-sha1 = "6bb55eff20ee05151b5cb4e777691fabae1524a3" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.91.1" +version = "1.91.3" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1212,9 +1212,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1337,9 +1337,9 @@ version = "0.1.6" [[TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" +git-tree-sha1 = "7bc1632a4eafbe9bd94cf1a784a9a4eb5e040a91" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.2.0" +version = "1.3.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1548,10 +1548,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml index 4ff2c1ab6..9b06ca6c8 100644 --- a/tutorials/13-seasonal-time-series/Manifest.toml +++ b/tutorials/13-seasonal-time-series/Manifest.toml @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -157,9 +157,9 @@ version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" +git-tree-sha1 = "7ebbd653f74504447f1c33b91cd706a69a1b189f" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.3" +version = "0.14.4" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -389,9 +389,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" +git-tree-sha1 = "0ba171480d51567ba337e5eea4e68a8231b7a2c3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.8" +version = "0.13.10" [[FixedPointNumbers]] deps = ["Statistics"] @@ -517,9 +517,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -855,9 +855,9 @@ version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1102,18 +1102,18 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" +git-tree-sha1 = "6bb55eff20ee05151b5cb4e777691fabae1524a3" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.91.1" +version = "1.91.3" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1195,9 +1195,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1326,9 +1326,9 @@ version = "0.1.6" [[TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" +git-tree-sha1 = "7bc1632a4eafbe9bd94cf1a784a9a4eb5e040a91" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.2.0" +version = "1.3.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1537,10 +1537,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml index 29e4c9fe4..70577a848 100644 --- a/tutorials/14-minituring/Manifest.toml +++ b/tutorials/14-minituring/Manifest.toml @@ -63,9 +63,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -352,9 +352,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[InitialValues]] git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" @@ -572,9 +572,9 @@ version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -723,9 +723,9 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -787,9 +787,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -910,10 +910,10 @@ deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[nghttp2_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml index 4ff2c1ab6..9b06ca6c8 100644 --- a/tutorials/docs-00-getting-started/Manifest.toml +++ b/tutorials/docs-00-getting-started/Manifest.toml @@ -75,9 +75,9 @@ version = "3.5.0+3" [[ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a89acc90c551067cd84119ff018619a1a76c6277" +git-tree-sha1 = "af2fd6a5d299078a6d7827ce3356b68d2de5470b" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.2.1" +version = "7.3.1" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -157,9 +157,9 @@ version = "0.1.6" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "64df3da1d2a26f4de23871cd1b6482bb68092bd5" +git-tree-sha1 = "7ebbd653f74504447f1c33b91cd706a69a1b189f" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.14.3" +version = "0.14.4" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -389,9 +389,9 @@ version = "3.3.10+0" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "9dec0199898d4d5c1d1b257cbf2cc498afe03a2a" +git-tree-sha1 = "0ba171480d51567ba337e5eea4e68a8231b7a2c3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.8" +version = "0.13.10" [[FixedPointNumbers]] deps = ["Statistics"] @@ -517,9 +517,9 @@ version = "0.3.11" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "2af2fe19f0d5799311a6491267a14817ad9fbd20" +git-tree-sha1 = "0ade27f0c49cebd8db2523c4eeccf779407cf12c" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.8" +version = "0.4.9" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -855,9 +855,9 @@ version = "1.0.2" [[NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "2fd5787125d1a93fbe30961bd841707b8a80d75b" +git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.9.6" +version = "0.9.7" [[NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1102,18 +1102,18 @@ version = "2.0.10" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "50314d2ef65fce648975a8e80ae6d8409ebbf835" +git-tree-sha1 = "f139e81a81e6c29c40f1971c9e5309b09c03f2c3" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.5" +version = "0.5.6" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "d78c2134ea1484559aa53cae133c0504ba31abec" +git-tree-sha1 = "6bb55eff20ee05151b5cb4e777691fabae1524a3" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.91.1" +version = "1.91.3" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] @@ -1195,9 +1195,9 @@ version = "0.1.15" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "6aa098ef1012364f2ede6b17bf358c7f1fbe90d4" +git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.17" +version = "1.5.19" [[StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1326,9 +1326,9 @@ version = "0.1.6" [[TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "6901000d75a14520bdd067fe90b9392384eb04a7" +git-tree-sha1 = "7bc1632a4eafbe9bd94cf1a784a9a4eb5e040a91" uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.2.0" +version = "1.3.0" [[Turing]] deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] @@ -1537,10 +1537,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.4+0" [[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.3" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]