From 4b36693315dcbd8a65a7fef7d9e90958543e869c Mon Sep 17 00:00:00 2001 From: "deploy.sh" Date: Fri, 13 Dec 2024 01:55:34 +0000 Subject: [PATCH] publish: Parse CSV output for all parameter values read outside read parameters method (#1541) generated from commit d6fcffd946141549a799e486fab684e6f4071eff --- .buildinfo | 2 +- .buildinfo.bak | 4 + _data_sources.html | 4 +- .../hsi_events.csv | 2 +- _hsi_events.html | 4 +- _sources/index.rst.txt | 2 + _sources/parameters.rst.txt | 158 +----- _sources/reference/tlo.methods.alri.rst.txt | 14 +- .../tlo.methods.bladder_cancer.rst.txt | 8 +- .../tlo.methods.breast_cancer.rst.txt | 8 +- ...methods.cardio_metabolic_disorders.rst.txt | 8 +- ...ods.care_of_women_during_pregnancy.rst.txt | 4 +- .../tlo.methods.chronicsyndrome.rst.txt | 8 +- .../tlo.methods.contraception.rst.txt | 6 +- _sources/reference/tlo.methods.copd.rst.txt | 8 +- .../reference/tlo.methods.depression.rst.txt | 8 +- .../reference/tlo.methods.diarrhoea.rst.txt | 10 +- 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273 files changed, 780 insertions(+), 1386 deletions(-) create mode 100644 .buildinfo.bak diff --git a/.buildinfo b/.buildinfo index 54c4b0e7b1..2182e3260c 100644 --- a/.buildinfo +++ b/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file records the configuration used when building these files. When it is not found, a full rebuild will be done. -config: 74d88a4f9619f12b24a2f1de81387b8a +config: d35aa913551fa0126e3a3b07d588a651 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/.buildinfo.bak b/.buildinfo.bak new file mode 100644 index 0000000000..8f79e1e354 --- /dev/null +++ b/.buildinfo.bak @@ -0,0 +1,4 @@ +# Sphinx build info version 1 +# This file records the configuration used when building these files. When it is not found, a full rebuild will be done. +config: 925c8d0f21d2085a66fcc46aa1541a8e +tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/_data_sources.html b/_data_sources.html index ad5cda1507..2aa51e8b70 100644 --- a/_data_sources.html +++ b/_data_sources.html @@ -6,7 +6,7 @@ - Core Functions — TLOmodel 0.1.dev2476+g58256ce documentation + Core Functions — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/_downloads/d259ee2478d4ac9e09a19cb71e63d1a9/hsi_events.csv b/_downloads/d259ee2478d4ac9e09a19cb71e63d1a9/hsi_events.csv index 7e092011a2..208e97b7b2 100644 --- a/_downloads/d259ee2478d4ac9e09a19cb71e63d1a9/hsi_events.csv +++ b/_downloads/d259ee2478d4ac9e09a19cb71e63d1a9/hsi_events.csv @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:2e268a02409dbd73fc55c7bdeff0f98872a5e6dcee972c829c588f0d238a6f95 +oid sha256:1d7bac925f8212af4be946d5c3a56e5c3d1b9782a293372b2205033237bf0f3d size 9939 diff --git a/_hsi_events.html b/_hsi_events.html index f37e8001d1..2184aa384a 100644 --- a/_hsi_events.html +++ b/_hsi_events.html @@ -6,7 +6,7 @@ - Alri — TLOmodel 0.1.dev2476+g58256ce documentation + Alri — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/_sources/index.rst.txt b/_sources/index.rst.txt index 47d4857290..720ca27b69 100644 --- a/_sources/index.rst.txt +++ b/_sources/index.rst.txt @@ -18,6 +18,8 @@ It is developed in a collaboration between: * `University of York `_ +* `East, Central and Southern Africa Health Community (ECSA-HC) `_ + It benefits from a close partnership between this team and the Ministry of Health, Malawi. diff --git a/_sources/parameters.rst.txt b/_sources/parameters.rst.txt index bfc8154d66..e6479002df 100644 --- a/_sources/parameters.rst.txt +++ b/_sources/parameters.rst.txt @@ -1847,29 +1847,29 @@ districts_in_region Northern ^^^^^^^^ -+---------+--------+--------+------------+------------+---------+--------+ -| 0 | 1 | 2 | 3 | 4 | 5 | 6 | -+=========+========+========+============+============+=========+========+ -| Chitipa | Mzimba | Likoma | Mzuzu City | Nkhata Bay | Karonga | Rumphi | -+---------+--------+--------+------------+------------+---------+--------+ ++------------+---------+--------+--------+------------+--------+---------+ +| 0 | 1 | 2 | 3 | 4 | 5 | 6 | ++============+=========+========+========+============+========+=========+ +| Nkhata Bay | Chitipa | Mzimba | Likoma | Mzuzu City | Rumphi | Karonga | ++------------+---------+--------+--------+------------+--------+---------+ Central ^^^^^^^ -+---------+---------+-------+----------+---------------+------+------------+--------+--------+---------+ -| 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | -+=========+=========+=======+==========+===============+======+============+========+========+=========+ -| Mchinji | Ntchisi | Dedza | Lilongwe | Lilongwe City | Dowa | Nkhotakota | Salima | Ntcheu | Kasungu | -+---------+---------+-------+----------+---------------+------+------------+--------+--------+---------+ ++--------+------+---------------+---------+----------+-------+---------+--------+------------+---------+ +| 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | ++========+======+===============+=========+==========+=======+=========+========+============+=========+ +| Ntcheu | Dowa | Lilongwe City | Kasungu | Lilongwe | Dedza | Ntchisi | Salima | Nkhotakota | Mchinji | ++--------+------+---------------+---------+----------+-------+---------+--------+------------+---------+ Southern ^^^^^^^^ -+------+----------+------------+----------+----------+--------+--------+----------+----------+---------+--------+------------+-------+---------------+--------+ -| 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | -+======+==========+============+==========+==========+========+========+==========+==========+=========+========+============+=======+===============+========+ -| Neno | Chikwawa | Zomba City | Blantyre | Phalombe | Thyolo | Mwanza | Mangochi | Machinga | Mulanje | Balaka | Chiradzulu | Zomba | Blantyre City | Nsanje | -+------+----------+------------+----------+----------+--------+--------+----------+----------+---------+--------+------------+-------+---------------+--------+ ++-------+------------+----------+----------+--------+------+----------+---------+--------+------------+----------+----------+--------+---------------+--------+ +| 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | ++=======+============+==========+==========+========+======+==========+=========+========+============+==========+==========+========+===============+========+ +| Zomba | Zomba City | Mangochi | Phalombe | Balaka | Neno | Machinga | Mulanje | Nsanje | Chiradzulu | Chikwawa | Blantyre | Thyolo | Blantyre City | Mwanza | ++-------+------------+----------+----------+--------+------+----------+---------+--------+------------+----------+----------+--------+---------------+--------+ .. _Demography-all_cause_mortality_schedule: @@ -4434,14 +4434,6 @@ Malaria +-----------------------------------------+-----------------------------------------------------------------------------------------------------------------+-----------+----------------------------------------+ | Name | Description | Type | Value | +=========================================+=================================================================================================================+===========+========================================+ -| interv | data frame of intervention coverage by year | Dataframe | :ref:`...` | -+-----------------------------------------+-----------------------------------------------------------------------------------------------------------------+-----------+----------------------------------------+ -| clin\_inc | data frame of clinical incidence by age, district, intervention coverage | Dataframe | :ref:`...` | -+-----------------------------------------+-----------------------------------------------------------------------------------------------------------------+-----------+----------------------------------------+ -| inf\_inc | data frame of infection incidence by age, district, intervention coverage | Dataframe | :ref:`...` | -+-----------------------------------------+-----------------------------------------------------------------------------------------------------------------+-----------+----------------------------------------+ -| sev\_inc | data frame of severe case incidence by age, district, intervention coverage | Dataframe | :ref:`...` | -+-----------------------------------------+-----------------------------------------------------------------------------------------------------------------+-----------+----------------------------------------+ | itn\_district | data frame of ITN usage rates by district | Dataframe | :ref:`...` | +-----------------------------------------+-----------------------------------------------------------------------------------------------------------------+-----------+----------------------------------------+ | irs\_district | data frame of IRS usage rates by district | Dataframe | :ref:`...` | @@ -4511,126 +4503,6 @@ Malaria | scaleup\_parameters | the parameters and values changed in scenario analysis | Dataframe | :ref:`...` | +-----------------------------------------+-----------------------------------------------------------------------------------------------------------------+-----------+----------------------------------------+ -.. _Malaria-interv: - -interv ------- - -+--------+----------------+----------------+----------------+---------------------+------------------+------------------+------------------+ -| Year | ITN_coverage | IRS_coverage | ACT_coverage | MIS_sleptUnderITN | MIS_IPTp_1dose | MIS_IPTp_2dose | MIS_IPTp_3dose | -+========+================+================+================+=====================+==================+==================+==================+ -| 2001 | 0 | 0 | 0 | nan | nan | nan | nan | -+--------+----------------+----------------+----------------+---------------------+------------------+------------------+------------------+ -| 2002 | 0 | 0 | 0 | nan | nan | nan | nan | -+--------+----------------+----------------+----------------+---------------------+------------------+------------------+------------------+ -| 2003 | 0.0337 | 0 | 0 | 0.02022 | nan | nan | nan | -+--------+----------------+----------------+----------------+---------------------+------------------+------------------+------------------+ -| 2004 | 0.1149 | 0 | 0.011 | 0.06894 | nan | nan | nan | -+--------+----------------+----------------+----------------+---------------------+------------------+------------------+------------------+ -| 2005 | 0.2636 | 0 | 0.0269 | 0.15816 | nan | nan | nan | -+--------+----------------+----------------+----------------+---------------------+------------------+------------------+------------------+ -| 2006 | 0.2405 | 0 | 0.0538 | 0.1443 | nan | nan | nan | -+--------+----------------+----------------+----------------+---------------------+------------------+------------------+------------------+ -| 2007 | 0.2865 | 0.00712375 | 0.0898 | 0.1719 | nan | nan | nan | -+--------+----------------+----------------+----------------+---------------------+------------------+------------------+------------------+ -| 2008 | 0.3185 | 0.00698449 | 0.1382 | 0.1911 | nan | nan | nan | -+--------+----------------+----------------+----------------+---------------------+------------------+------------------+------------------+ -| 2009 | 0.2908 | 0.0198598 | 0.2082 | 0.17448 | nan | nan | nan | -+--------+----------------+----------------+----------------+---------------------+------------------+------------------+------------------+ - -*Only first 10 rows of 26 are shown.* - - -.. _Malaria-clin_inc: - -clin_inc --------- - -+--------------+---------+--------+-------+---------+----------------+------------------+-------+--------------------+---------------------+ -| Unnamed: 0 | admin | llin | irs | month | inc_age_gp | clin_incidence | age | monthly_inc_clin | monthly_prob_clin | -+==============+=========+========+=======+=========+================+==================+=======+====================+=====================+ -| 1 | Balaka | 0.1 | 0.8 | 2 | clin_inc_0_0.5 | 0.616651 | 0 | 0.0513875 | 0.0500895 | -+--------------+---------+--------+-------+---------+----------------+------------------+-------+--------------------+---------------------+ -| 2 | Balaka | 0.1 | 0.8 | 3 | clin_inc_0_0.5 | 0.724266 | 0 | 0.0603555 | 0.0585702 | -+--------------+---------+--------+-------+---------+----------------+------------------+-------+--------------------+---------------------+ -| 3 | Balaka | 0.1 | 0.8 | 4 | clin_inc_0_0.5 | 0.487449 | 0 | 0.0406208 | 0.0398068 | -+--------------+---------+--------+-------+---------+----------------+------------------+-------+--------------------+---------------------+ -| 4 | Balaka | 0.1 | 0.8 | 5 | clin_inc_0_0.5 | 0.221309 | 0 | 0.0184424 | 0.0182734 | -+--------------+---------+--------+-------+---------+----------------+------------------+-------+--------------------+---------------------+ -| 5 | Balaka | 0.1 | 0.8 | 6 | clin_inc_0_0.5 | 0.0654417 | 0 | 0.00545347 | 0.00543863 | -+--------------+---------+--------+-------+---------+----------------+------------------+-------+--------------------+---------------------+ -| 6 | Balaka | 0.1 | 0.8 | 7 | clin_inc_0_0.5 | 0.00924685 | 0 | 0.000770571 | 0.000770274 | -+--------------+---------+--------+-------+---------+----------------+------------------+-------+--------------------+---------------------+ -| 7 | Balaka | 0.1 | 0.8 | 8 | clin_inc_0_0.5 | 0.0258359 | 0 | 0.00215299 | 0.00215068 | -+--------------+---------+--------+-------+---------+----------------+------------------+-------+--------------------+---------------------+ -| 8 | Balaka | 0.1 | 0.8 | 9 | clin_inc_0_0.5 | 0.0592395 | 0 | 0.00493663 | 0.00492446 | -+--------------+---------+--------+-------+---------+----------------+------------------+-------+--------------------+---------------------+ -| 9 | Balaka | 0.1 | 0.8 | 10 | clin_inc_0_0.5 | 0.0234651 | 0 | 0.00195542 | 0.00195351 | -+--------------+---------+--------+-------+---------+----------------+------------------+-------+--------------------+---------------------+ - -*Only first 10 rows of 497664 are shown.* - - -.. _Malaria-inf_inc: - -inf_inc -------- - -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| Unnamed: 0 | admin | llin | irs | month | inf_inc_age_gp | inf_incidence | age | monthly_inc_inf | monthly_prob_inf | -+==============+=========+========+=======+=========+==================+=================+=======+===================+====================+ -| 1 | Balaka | 0.1 | 0.8 | 2 | inf_inc_0_0.5 | 1.19984 | 0 | 0.0999865 | 0.0951504 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 2 | Balaka | 0.1 | 0.8 | 3 | inf_inc_0_0.5 | 1.42709 | 0 | 0.118924 | 0.112125 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 3 | Balaka | 0.1 | 0.8 | 4 | inf_inc_0_0.5 | 0.955087 | 0 | 0.0795906 | 0.0765057 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 4 | Balaka | 0.1 | 0.8 | 5 | inf_inc_0_0.5 | 0.464054 | 0 | 0.0386712 | 0.037933 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 5 | Balaka | 0.1 | 0.8 | 6 | inf_inc_0_0.5 | 0.122824 | 0 | 0.0102353 | 0.0101831 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 6 | Balaka | 0.1 | 0.8 | 7 | inf_inc_0_0.5 | 0.0174689 | 0 | 0.00145575 | 0.00145469 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 7 | Balaka | 0.1 | 0.8 | 8 | inf_inc_0_0.5 | 0.0559292 | 0 | 0.00466077 | 0.00464993 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 8 | Balaka | 0.1 | 0.8 | 9 | inf_inc_0_0.5 | 0.110247 | 0 | 0.00918724 | 0.00914517 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 9 | Balaka | 0.1 | 0.8 | 10 | inf_inc_0_0.5 | 0.0416001 | 0 | 0.00346667 | 0.00346067 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ - -*Only first 10 rows of 497664 are shown.* - - -.. _Malaria-sev_inc: - -sev_inc -------- - -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| Unnamed: 0 | admin | llin | irs | month | sev_inc_age_gp | sev_incidence | age | monthly_inc_sev | monthly_prob_sev | -+==============+=========+========+=======+=========+==================+=================+=======+===================+====================+ -| 1 | Balaka | 0.1 | 0.8 | 2 | sev_inc_0_0.5 | 0.039965 | 0 | 0.00333041 | 0.00332487 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 2 | Balaka | 0.1 | 0.8 | 3 | sev_inc_0_0.5 | 0.0449733 | 0 | 0.00374778 | 0.00374076 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 3 | Balaka | 0.1 | 0.8 | 4 | sev_inc_0_0.5 | 0.0293607 | 0 | 0.00244672 | 0.00244373 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 4 | Balaka | 0.1 | 0.8 | 5 | sev_inc_0_0.5 | 0.0133483 | 0 | 0.00111236 | 0.00111174 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 5 | Balaka | 0.1 | 0.8 | 6 | sev_inc_0_0.5 | 0.00411232 | 0 | 0.000342693 | 0.000342634 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 6 | Balaka | 0.1 | 0.8 | 7 | sev_inc_0_0.5 | 0.000551552 | 0 | 4.59627e-05 | 4.59616e-05 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 7 | Balaka | 0.1 | 0.8 | 8 | sev_inc_0_0.5 | 0.00155992 | 0 | 0.000129993 | 0.000129985 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 8 | Balaka | 0.1 | 0.8 | 9 | sev_inc_0_0.5 | 0.00409992 | 0 | 0.00034166 | 0.000341602 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ -| 9 | Balaka | 0.1 | 0.8 | 10 | sev_inc_0_0.5 | 0.00162945 | 0 | 0.000135787 | 0.000135778 | -+--------------+---------+--------+-------+---------+------------------+-----------------+-------+-------------------+--------------------+ - -*Only first 10 rows of 497664 are shown.* - - .. _Malaria-itn_district: itn_district diff --git a/_sources/reference/tlo.methods.alri.rst.txt b/_sources/reference/tlo.methods.alri.rst.txt index f5101fc001..775414b482 100644 --- a/_sources/reference/tlo.methods.alri.rst.txt +++ b/_sources/reference/tlo.methods.alri.rst.txt @@ -421,13 +421,13 @@ tlo.methods.alri module **Class attributes:** - CAUSES_OF_DEATH : {'ALRI_Enterobacteriaceae': , 'ALRI_H.influenzae_non_type_b': , 'ALRI_HMPV': , 'ALRI_Hib': , 'ALRI_Influenza': , 'ALRI_P.jirovecii': , 'ALRI_Parainfluenza': , 'ALRI_RSV': , 'ALRI_Rhinovirus': , 'ALRI_Staph_aureus': , 'ALRI_Strep_pneumoniae_PCV13': , 'ALRI_Strep_pneumoniae_non_PCV13': , 'ALRI_other_Strepto_Enterococci': , 'ALRI_other_bacterial_pathogens': , 'ALRI_other_pathogens_NoS': , 'ALRI_other_viral_pathogens': } + CAUSES_OF_DEATH : {'ALRI_Enterobacteriaceae': , 'ALRI_H.influenzae_non_type_b': , 'ALRI_HMPV': , 'ALRI_Hib': , 'ALRI_Influenza': , 'ALRI_P.jirovecii': , 'ALRI_Parainfluenza': , 'ALRI_RSV': , 'ALRI_Rhinovirus': , 'ALRI_Staph_aureus': , 'ALRI_Strep_pneumoniae_PCV13': , 'ALRI_Strep_pneumoniae_non_PCV13': , 'ALRI_other_Strepto_Enterococci': , 'ALRI_other_bacterial_pathogens': , 'ALRI_other_pathogens_NoS': , 'ALRI_other_viral_pathogens': } - CAUSES_OF_DISABILITY : {'ALRI_Enterobacteriaceae': , 'ALRI_H.influenzae_non_type_b': , 'ALRI_HMPV': , 'ALRI_Hib': , 'ALRI_Influenza': , 'ALRI_P.jirovecii': , 'ALRI_Parainfluenza': , 'ALRI_RSV': , 'ALRI_Rhinovirus': , 'ALRI_Staph_aureus': , 'ALRI_Strep_pneumoniae_PCV13': , 'ALRI_Strep_pneumoniae_non_PCV13': , 'ALRI_other_Strepto_Enterococci': , 'ALRI_other_bacterial_pathogens': , 'ALRI_other_pathogens_NoS': , 'ALRI_other_viral_pathogens': } + CAUSES_OF_DISABILITY : {'ALRI_Enterobacteriaceae': , 'ALRI_H.influenzae_non_type_b': , 'ALRI_HMPV': , 'ALRI_Hib': , 'ALRI_Influenza': , 'ALRI_P.jirovecii': , 'ALRI_Parainfluenza': , 'ALRI_RSV': , 'ALRI_Rhinovirus': , 'ALRI_Staph_aureus': , 'ALRI_Strep_pneumoniae_PCV13': , 'ALRI_Strep_pneumoniae_non_PCV13': , 'ALRI_other_Strepto_Enterococci': , 'ALRI_other_bacterial_pathogens': , 'ALRI_other_pathogens_NoS': , 'ALRI_other_viral_pathogens': } - INIT_DEPENDENCIES : {'Demography', 'Hiv', 'SymptomManager', 'Lifestyle', 'NewbornOutcomes', 'Wasting', 'Epi'} + INIT_DEPENDENCIES : {'Demography', 'Lifestyle', 'Hiv', 'Epi', 'Wasting', 'SymptomManager', 'NewbornOutcomes'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden'} @@ -506,7 +506,7 @@ tlo.methods.alri module __annotations__ : {} - fraction_of_year_between_polling_event : + fraction_of_year_between_polling_event : **Functions (defined or overridden in class AlriPollingEvent):** @@ -611,7 +611,7 @@ tlo.methods.alri module __annotations__ : {} - _is_as_in_patient : + _is_as_in_patient : **Functions (defined or overridden in class HSI_Alri_Treatment):** @@ -792,7 +792,7 @@ tlo.methods.alri module **Class attributes:** - ALTERNATIVE_TO : {'Hiv', 'Wasting', 'Epi'} + ALTERNATIVE_TO : {'Wasting', 'Hiv', 'Epi'} INIT_DEPENDENCIES : {'Demography'} diff --git a/_sources/reference/tlo.methods.bladder_cancer.rst.txt b/_sources/reference/tlo.methods.bladder_cancer.rst.txt index fb269ca4c2..b064b94b11 100644 --- a/_sources/reference/tlo.methods.bladder_cancer.rst.txt +++ b/_sources/reference/tlo.methods.bladder_cancer.rst.txt @@ -148,13 +148,13 @@ tlo.methods.bladder_cancer module **Class attributes:** - CAUSES_OF_DEATH : {'BladderCancer': } + CAUSES_OF_DEATH : {'BladderCancer': } - CAUSES_OF_DISABILITY : {'BladderCancer': } + CAUSES_OF_DISABILITY : {'BladderCancer': } - INIT_DEPENDENCIES : {'Lifestyle', 'HealthSystem', 'Demography', 'SymptomManager'} + INIT_DEPENDENCIES : {'Demography', 'Lifestyle', 'HealthSystem', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden', 'Schisto'} diff --git a/_sources/reference/tlo.methods.breast_cancer.rst.txt b/_sources/reference/tlo.methods.breast_cancer.rst.txt index 194f9d79ce..2102a3a74a 100644 --- a/_sources/reference/tlo.methods.breast_cancer.rst.txt +++ b/_sources/reference/tlo.methods.breast_cancer.rst.txt @@ -133,13 +133,13 @@ tlo.methods.breast_cancer module **Class attributes:** - CAUSES_OF_DEATH : {'BreastCancer': } + CAUSES_OF_DEATH : {'BreastCancer': } - CAUSES_OF_DISABILITY : {'BreastCancer': } + CAUSES_OF_DISABILITY : {'BreastCancer': } - INIT_DEPENDENCIES : {'HealthSystem', 'Demography', 'SymptomManager'} + INIT_DEPENDENCIES : {'Demography', 'HealthSystem', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden'} diff --git a/_sources/reference/tlo.methods.cardio_metabolic_disorders.rst.txt b/_sources/reference/tlo.methods.cardio_metabolic_disorders.rst.txt index 9714ecc71f..01ea9a9557 100644 --- a/_sources/reference/tlo.methods.cardio_metabolic_disorders.rst.txt +++ b/_sources/reference/tlo.methods.cardio_metabolic_disorders.rst.txt @@ -279,13 +279,13 @@ tlo.methods.cardio_metabolic_disorders module ADDITIONAL_DEPENDENCIES : {'Depression'} - CAUSES_OF_DEATH : {'diabetes': , 'chronic_ischemic_hd': , 'ever_heart_attack': , 'ever_stroke': , 'chronic_kidney_disease': } + CAUSES_OF_DEATH : {'diabetes': , 'chronic_ischemic_hd': , 'ever_heart_attack': , 'ever_stroke': , 'chronic_kidney_disease': } - CAUSES_OF_DISABILITY : {'diabetes': , 'chronic_ischemic_hd': , 'heart_attack': , 'stroke': , 'chronic_kidney_disease': , 'lower_back_pain': } + CAUSES_OF_DISABILITY : {'diabetes': , 'chronic_ischemic_hd': , 'heart_attack': , 'stroke': , 'chronic_kidney_disease': , 'lower_back_pain': } - INIT_DEPENDENCIES : {'Lifestyle', 'HealthSystem', 'Demography', 'SymptomManager'} + INIT_DEPENDENCIES : {'Demography', 'Lifestyle', 'HealthSystem', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden', 'Hiv'} diff --git a/_sources/reference/tlo.methods.care_of_women_during_pregnancy.rst.txt b/_sources/reference/tlo.methods.care_of_women_during_pregnancy.rst.txt index 2c0286146b..1dbfbe496e 100644 --- a/_sources/reference/tlo.methods.care_of_women_during_pregnancy.rst.txt +++ b/_sources/reference/tlo.methods.care_of_women_during_pregnancy.rst.txt @@ -157,9 +157,9 @@ tlo.methods.care_of_women_during_pregnancy module **Class attributes:** - ADDITIONAL_DEPENDENCIES : {'Lifestyle', 'Contraception', 'Labour'} + ADDITIONAL_DEPENDENCIES : {'Labour', 'Contraception', 'Lifestyle'} - INIT_DEPENDENCIES : {'HealthSystem', 'Demography', 'PregnancySupervisor'} + INIT_DEPENDENCIES : {'Demography', 'HealthSystem', 'PregnancySupervisor'} METADATA : {} diff --git a/_sources/reference/tlo.methods.chronicsyndrome.rst.txt b/_sources/reference/tlo.methods.chronicsyndrome.rst.txt index 3be3a9c3bb..b368ca2c92 100644 --- a/_sources/reference/tlo.methods.chronicsyndrome.rst.txt +++ b/_sources/reference/tlo.methods.chronicsyndrome.rst.txt @@ -70,13 +70,13 @@ tlo.methods.chronicsyndrome module **Class attributes:** - CAUSES_OF_DEATH : {'ChronicSyndrome': } + CAUSES_OF_DEATH : {'ChronicSyndrome': } - CAUSES_OF_DISABILITY : {'ChronicSyndrome': } + CAUSES_OF_DISABILITY : {'ChronicSyndrome': } - INIT_DEPENDENCIES : {'HealthSystem', 'Demography', 'SymptomManager'} + INIT_DEPENDENCIES : {'Demography', 'HealthSystem', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden'} diff --git a/_sources/reference/tlo.methods.contraception.rst.txt b/_sources/reference/tlo.methods.contraception.rst.txt index 9a183acf2a..b293f64a5f 100644 --- a/_sources/reference/tlo.methods.contraception.rst.txt +++ b/_sources/reference/tlo.methods.contraception.rst.txt @@ -112,7 +112,7 @@ tlo.methods.contraception module **Class attributes:** - ADDITIONAL_DEPENDENCIES : {'Hiv', 'Labour'} + ADDITIONAL_DEPENDENCIES : {'Labour', 'Hiv'} INIT_DEPENDENCIES : {'Demography'} @@ -122,9 +122,9 @@ tlo.methods.contraception module __annotations__ : {} - all_contraception_states : {'IUD', 'not_using', 'other_traditional', 'other_modern', 'pill', 'injections', 'female_sterilization', 'periodic_abstinence', 'male_condom', 'withdrawal', 'implant'} + all_contraception_states : {'injections', 'IUD', 'withdrawal', 'pill', 'female_sterilization', 'not_using', 'periodic_abstinence', 'other_modern', 'implant', 'other_traditional', 'male_condom'} - contraceptives_initiated_with_additional_items : {'injections', 'IUD', 'female_sterilization', 'pill', 'implant'} + contraceptives_initiated_with_additional_items : {'injections', 'IUD', 'implant', 'pill', 'female_sterilization'} **Functions (defined or overridden in class Contraception):** diff --git a/_sources/reference/tlo.methods.copd.rst.txt b/_sources/reference/tlo.methods.copd.rst.txt index e9f53f3764..fd5c375276 100644 --- a/_sources/reference/tlo.methods.copd.rst.txt +++ b/_sources/reference/tlo.methods.copd.rst.txt @@ -105,13 +105,13 @@ tlo.methods.copd module ADDITIONAL_DEPENDENCIES : set() - CAUSES_OF_DEATH : {'COPD_cat0': , 'COPD_cat1': , 'COPD_cat2': , 'COPD_cat3': , 'COPD_cat4': , 'COPD_cat5': , 'COPD_cat6': } + CAUSES_OF_DEATH : {'COPD_cat0': , 'COPD_cat1': , 'COPD_cat2': , 'COPD_cat3': , 'COPD_cat4': , 'COPD_cat5': , 'COPD_cat6': } - CAUSES_OF_DISABILITY : {'COPD': } + CAUSES_OF_DISABILITY : {'COPD': } - INIT_DEPENDENCIES : {'Lifestyle', 'HealthSystem', 'SymptomManager'} + INIT_DEPENDENCIES : {'HealthSystem', 'Lifestyle', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } __annotations__ : {} diff --git a/_sources/reference/tlo.methods.depression.rst.txt b/_sources/reference/tlo.methods.depression.rst.txt index 5cf9dc5f65..b4a39f5337 100644 --- a/_sources/reference/tlo.methods.depression.rst.txt +++ b/_sources/reference/tlo.methods.depression.rst.txt @@ -178,13 +178,13 @@ tlo.methods.depression module **Class attributes:** - CAUSES_OF_DEATH : {'Suicide': } + CAUSES_OF_DEATH : {'Suicide': } - CAUSES_OF_DISABILITY : {'SevereDepression': } + CAUSES_OF_DISABILITY : {'SevereDepression': } - INIT_DEPENDENCIES : {'HealthSystem', 'Demography', 'Contraception', 'SymptomManager', 'Lifestyle'} + INIT_DEPENDENCIES : {'HealthSystem', 'Lifestyle', 'Demography', 'Contraception', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden', 'Hiv'} diff --git a/_sources/reference/tlo.methods.diarrhoea.rst.txt b/_sources/reference/tlo.methods.diarrhoea.rst.txt index 8c567635ea..54c2844c4e 100644 --- a/_sources/reference/tlo.methods.diarrhoea.rst.txt +++ b/_sources/reference/tlo.methods.diarrhoea.rst.txt @@ -369,13 +369,13 @@ tlo.methods.diarrhoea module ADDITIONAL_DEPENDENCIES : {'Stunting', 'Alri', 'Epi'} - CAUSES_OF_DEATH : {'Diarrhoea_rotavirus': , 'Diarrhoea_shigella': , 'Diarrhoea_adenovirus': , 'Diarrhoea_cryptosporidium': , 'Diarrhoea_campylobacter': , 'Diarrhoea_ETEC': , 'Diarrhoea_sapovirus': , 'Diarrhoea_norovirus': , 'Diarrhoea_astrovirus': , 'Diarrhoea_tEPEC': } + CAUSES_OF_DEATH : {'Diarrhoea_rotavirus': , 'Diarrhoea_shigella': , 'Diarrhoea_adenovirus': , 'Diarrhoea_cryptosporidium': , 'Diarrhoea_campylobacter': , 'Diarrhoea_ETEC': , 'Diarrhoea_sapovirus': , 'Diarrhoea_norovirus': , 'Diarrhoea_astrovirus': , 'Diarrhoea_tEPEC': } - CAUSES_OF_DISABILITY : {'Diarrhoea': } + CAUSES_OF_DISABILITY : {'Diarrhoea': } - INIT_DEPENDENCIES : {'HealthSystem', 'Demography', 'Hiv', 'SymptomManager', 'Lifestyle', 'NewbornOutcomes', 'Wasting'} + INIT_DEPENDENCIES : {'HealthSystem', 'Lifestyle', 'Demography', 'Hiv', 'Wasting', 'SymptomManager', 'NewbornOutcomes'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden'} @@ -601,7 +601,7 @@ tlo.methods.diarrhoea module **Class attributes:** - ALTERNATIVE_TO : {'Alri', 'Hiv', 'Stunting', 'Wasting', 'Epi'} + ALTERNATIVE_TO : {'Alri', 'Hiv', 'Epi', 'Wasting', 'Stunting'} INIT_DEPENDENCIES : {'Demography'} diff --git a/_sources/reference/tlo.methods.epi.rst.txt b/_sources/reference/tlo.methods.epi.rst.txt index 38dcc02421..a51afc5127 100644 --- a/_sources/reference/tlo.methods.epi.rst.txt +++ b/_sources/reference/tlo.methods.epi.rst.txt @@ -109,7 +109,7 @@ tlo.methods.epi module **Class attributes:** - INIT_DEPENDENCIES : {'HealthSystem', 'Demography'} + INIT_DEPENDENCIES : {'Demography', 'HealthSystem'} METADATA : {} @@ -171,7 +171,7 @@ tlo.methods.epi module **Class attributes:** - EXPECTED_APPT_FOOTPRINT : + EXPECTED_APPT_FOOTPRINT : __annotations__ : {} diff --git a/_sources/reference/tlo.methods.epilepsy.rst.txt b/_sources/reference/tlo.methods.epilepsy.rst.txt index da4b6d38e5..db7f8b8def 100644 --- a/_sources/reference/tlo.methods.epilepsy.rst.txt +++ b/_sources/reference/tlo.methods.epilepsy.rst.txt @@ -112,13 +112,13 @@ tlo.methods.epilepsy module **Class attributes:** - CAUSES_OF_DEATH : {'Epilepsy': } + CAUSES_OF_DEATH : {'Epilepsy': } - CAUSES_OF_DISABILITY : {'Epilepsy': } + CAUSES_OF_DISABILITY : {'Epilepsy': } - INIT_DEPENDENCIES : {'HealthSystem', 'Demography', 'HealthBurden', 'SymptomManager'} + INIT_DEPENDENCIES : {'Demography', 'HealthBurden', 'HealthSystem', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } TREATMENT_ID : antiepileptic diff --git a/_sources/reference/tlo.methods.healthseekingbehaviour.rst.txt b/_sources/reference/tlo.methods.healthseekingbehaviour.rst.txt index 394db3f586..c989b2a24c 100644 --- a/_sources/reference/tlo.methods.healthseekingbehaviour.rst.txt +++ b/_sources/reference/tlo.methods.healthseekingbehaviour.rst.txt @@ -79,13 +79,13 @@ tlo.methods.healthseekingbehaviour module ADDITIONAL_DEPENDENCIES : {'Lifestyle'} - INIT_DEPENDENCIES : {'HealthSystem', 'Demography', 'SymptomManager'} + INIT_DEPENDENCIES : {'Demography', 'HealthSystem', 'SymptomManager'} METADATA : {} __annotations__ : {} - force_any_symptom_to_lead_to_healthcareseeking : + force_any_symptom_to_lead_to_healthcareseeking : **Functions (defined or overridden in class HealthSeekingBehaviour):** diff --git a/_sources/reference/tlo.methods.healthsystem.rst.txt b/_sources/reference/tlo.methods.healthsystem.rst.txt index 4716e2292b..933cfb36d0 100644 --- a/_sources/reference/tlo.methods.healthsystem.rst.txt +++ b/_sources/reference/tlo.methods.healthsystem.rst.txt @@ -164,13 +164,13 @@ tlo.methods.healthsystem module __annotations__ : {} - capabilities_today : + capabilities_today : - hsi_event_counts : + hsi_event_counts : - never_ran_hsi_event_counts : + never_ran_hsi_event_counts : - use_funded_or_actual_staffing : + use_funded_or_actual_staffing : **Functions (defined or overridden in class HealthSystem):** @@ -347,7 +347,7 @@ tlo.methods.healthsystem module __annotations__ : {} - current_pop_size : + current_pop_size : **Functions (defined or overridden in class DynamicRescalingHRCapabilities):** diff --git a/_sources/reference/tlo.methods.hiv.rst.txt b/_sources/reference/tlo.methods.hiv.rst.txt index bacd9e7779..c877f03bdd 100644 --- a/_sources/reference/tlo.methods.hiv.rst.txt +++ b/_sources/reference/tlo.methods.hiv.rst.txt @@ -291,13 +291,13 @@ tlo.methods.hiv module ADDITIONAL_DEPENDENCIES : {'Tb', 'NewbornOutcomes'} - CAUSES_OF_DEATH : {'AIDS_non_TB': , 'AIDS_TB': } + CAUSES_OF_DEATH : {'AIDS_non_TB': , 'AIDS_TB': } - CAUSES_OF_DISABILITY : {'HIV': } + CAUSES_OF_DISABILITY : {'HIV': } - INIT_DEPENDENCIES : {'Lifestyle', 'HealthSystem', 'Demography', 'SymptomManager'} + INIT_DEPENDENCIES : {'Demography', 'Lifestyle', 'HealthSystem', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden'} @@ -640,7 +640,7 @@ tlo.methods.hiv module **Class attributes:** - EXPECTED_APPT_FOOTPRINT : + EXPECTED_APPT_FOOTPRINT : __annotations__ : {} diff --git a/_sources/reference/tlo.methods.hiv_tb_calibration.rst.txt b/_sources/reference/tlo.methods.hiv_tb_calibration.rst.txt index 4a9355e442..afb4ac066a 100644 --- a/_sources/reference/tlo.methods.hiv_tb_calibration.rst.txt +++ b/_sources/reference/tlo.methods.hiv_tb_calibration.rst.txt @@ -12,7 +12,7 @@ tlo.methods.hiv_tb_calibration module **Class attributes:** - INIT_DEPENDENCIES : {'Tb', 'Demography', 'Hiv'} + INIT_DEPENDENCIES : {'Demography', 'Tb', 'Hiv'} METADATA : {} diff --git a/_sources/reference/tlo.methods.hsi_event.rst.txt b/_sources/reference/tlo.methods.hsi_event.rst.txt index cecbc72f5c..7a54b5509d 100644 --- a/_sources/reference/tlo.methods.hsi_event.rst.txt +++ b/_sources/reference/tlo.methods.hsi_event.rst.txt @@ -15,17 +15,17 @@ tlo.methods.hsi_event module _received_info_about_bed_days : None - bed_days_allocated_to_this_event : + bed_days_allocated_to_this_event : expected_time_requests : {} facility_info : None - healthcare_system : + healthcare_system : - is_all_declared_equipment_available : + is_all_declared_equipment_available : - sim : + sim : **Functions (defined or overridden in class HSI_Event):** diff --git a/_sources/reference/tlo.methods.labour.rst.txt b/_sources/reference/tlo.methods.labour.rst.txt index 4aea7749a8..163027354f 100644 --- a/_sources/reference/tlo.methods.labour.rst.txt +++ b/_sources/reference/tlo.methods.labour.rst.txt @@ -643,15 +643,15 @@ tlo.methods.labour module **Class attributes:** - ADDITIONAL_DEPENDENCIES : {'HealthSystem', 'Contraception', 'PregnancySupervisor', 'Lifestyle', 'NewbornOutcomes', 'CareOfWomenDuringPregnancy', 'PostnatalSupervisor'} + ADDITIONAL_DEPENDENCIES : {'HealthSystem', 'Lifestyle', 'Contraception', 'PregnancySupervisor', 'PostnatalSupervisor', 'CareOfWomenDuringPregnancy', 'NewbornOutcomes'} - CAUSES_OF_DEATH : {'uterine_rupture': , 'intrapartum_sepsis': , 'antepartum_haemorrhage': , 'postpartum_sepsis': , 'postpartum_haemorrhage': , 'secondary_postpartum_haemorrhage': , 'severe_pre_eclampsia': , 'eclampsia': } + CAUSES_OF_DEATH : {'uterine_rupture': , 'intrapartum_sepsis': , 'antepartum_haemorrhage': , 'postpartum_sepsis': , 'postpartum_haemorrhage': , 'secondary_postpartum_haemorrhage': , 'severe_pre_eclampsia': , 'eclampsia': } - CAUSES_OF_DISABILITY : {'maternal': } + CAUSES_OF_DISABILITY : {'maternal': } INIT_DEPENDENCIES : {'Demography'} - METADATA : {, , } + METADATA : {, , } OPTIONAL_INIT_DEPENDENCIES : {'Stunting'} diff --git a/_sources/reference/tlo.methods.malaria.rst.txt b/_sources/reference/tlo.methods.malaria.rst.txt index e1b59019ef..e4378ec1f4 100644 --- a/_sources/reference/tlo.methods.malaria.rst.txt +++ b/_sources/reference/tlo.methods.malaria.rst.txt @@ -18,18 +18,6 @@ tlo.methods.malaria module * - Item - Type - Description - * - interv - - REAL - - data frame of intervention coverage by year - * - clin_inc - - REAL - - data frame of clinical incidence by age, district, intervention coverage - * - inf_inc - - REAL - - data frame of infection incidence by age, district, intervention coverage - * - sev_inc - - REAL - - data frame of severe case incidence by age, district, intervention coverage * - itn_district - REAL - data frame of ITN usage rates by district @@ -190,13 +178,13 @@ tlo.methods.malaria module **Class attributes:** - CAUSES_OF_DEATH : {'Malaria': } + CAUSES_OF_DEATH : {'Malaria': } - CAUSES_OF_DISABILITY : {'Malaria': } + CAUSES_OF_DISABILITY : {'Malaria': } - INIT_DEPENDENCIES : {'HealthSystem', 'Demography', 'Contraception', 'SymptomManager'} + INIT_DEPENDENCIES : {'Demography', 'Contraception', 'HealthSystem', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden', 'Hiv'} diff --git a/_sources/reference/tlo.methods.measles.rst.txt b/_sources/reference/tlo.methods.measles.rst.txt index feed5314bd..bd08e972ee 100644 --- a/_sources/reference/tlo.methods.measles.rst.txt +++ b/_sources/reference/tlo.methods.measles.rst.txt @@ -73,13 +73,13 @@ tlo.methods.measles module **Class attributes:** - CAUSES_OF_DEATH : {'Measles': } + CAUSES_OF_DEATH : {'Measles': } - CAUSES_OF_DISABILITY : {'Measles': } + CAUSES_OF_DISABILITY : {'Measles': } - INIT_DEPENDENCIES : {'HealthSystem', 'Demography', 'SymptomManager'} + INIT_DEPENDENCIES : {'Demography', 'HealthSystem', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden'} diff --git a/_sources/reference/tlo.methods.mockitis.rst.txt b/_sources/reference/tlo.methods.mockitis.rst.txt index c37a79192c..c3595249b6 100644 --- a/_sources/reference/tlo.methods.mockitis.rst.txt +++ b/_sources/reference/tlo.methods.mockitis.rst.txt @@ -64,13 +64,13 @@ tlo.methods.mockitis module **Class attributes:** - CAUSES_OF_DEATH : {'Mockitis': } + CAUSES_OF_DEATH : {'Mockitis': } - CAUSES_OF_DISABILITY : {'Mockitis': } + CAUSES_OF_DISABILITY : {'Mockitis': } INIT_DEPENDENCIES : {'Demography', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden'} diff --git a/_sources/reference/tlo.methods.newborn_outcomes.rst.txt b/_sources/reference/tlo.methods.newborn_outcomes.rst.txt index e432c5320d..50e845a262 100644 --- a/_sources/reference/tlo.methods.newborn_outcomes.rst.txt +++ b/_sources/reference/tlo.methods.newborn_outcomes.rst.txt @@ -298,15 +298,15 @@ tlo.methods.newborn_outcomes module **Class attributes:** - ADDITIONAL_DEPENDENCIES : {'CareOfWomenDuringPregnancy', 'PostnatalSupervisor', 'PregnancySupervisor', 'Labour'} + ADDITIONAL_DEPENDENCIES : {'Labour', 'CareOfWomenDuringPregnancy', 'PregnancySupervisor', 'PostnatalSupervisor'} - CAUSES_OF_DEATH : {'early_onset_sepsis': , 'late_onset_sepsis': , 'encephalopathy': , 'neonatal_respiratory_depression': , 'preterm_other': , 'respiratory_distress_syndrome': , 'congenital_heart_anomaly': , 'limb_or_musculoskeletal_anomaly': , 'urogenital_anomaly': , 'digestive_anomaly': , 'other_anomaly': } + CAUSES_OF_DEATH : {'early_onset_sepsis': , 'late_onset_sepsis': , 'encephalopathy': , 'neonatal_respiratory_depression': , 'preterm_other': , 'respiratory_distress_syndrome': , 'congenital_heart_anomaly': , 'limb_or_musculoskeletal_anomaly': , 'urogenital_anomaly': , 'digestive_anomaly': , 'other_anomaly': } - CAUSES_OF_DISABILITY : {'Retinopathy of Prematurity': , 'Neonatal Encephalopathy': , 'Neonatal Sepsis Long term Disability': , 'Preterm Birth Disability': } + CAUSES_OF_DISABILITY : {'Retinopathy of Prematurity': , 'Neonatal Encephalopathy': , 'Neonatal Sepsis Long term Disability': , 'Preterm Birth Disability': } - INIT_DEPENDENCIES : {'HealthSystem', 'Demography'} + INIT_DEPENDENCIES : {'Demography', 'HealthSystem'} - METADATA : {, , } + METADATA : {, , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden'} diff --git a/_sources/reference/tlo.methods.oesophagealcancer.rst.txt b/_sources/reference/tlo.methods.oesophagealcancer.rst.txt index 19dfba8996..74bdfade02 100644 --- a/_sources/reference/tlo.methods.oesophagealcancer.rst.txt +++ b/_sources/reference/tlo.methods.oesophagealcancer.rst.txt @@ -148,13 +148,13 @@ tlo.methods.oesophagealcancer module **Class attributes:** - CAUSES_OF_DEATH : {'OesophagealCancer': } + CAUSES_OF_DEATH : {'OesophagealCancer': } - CAUSES_OF_DISABILITY : {'OesophagealCancer': } + CAUSES_OF_DISABILITY : {'OesophagealCancer': } - INIT_DEPENDENCIES : {'Lifestyle', 'HealthSystem', 'Demography', 'SymptomManager'} + INIT_DEPENDENCIES : {'Demography', 'Lifestyle', 'HealthSystem', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden'} diff --git a/_sources/reference/tlo.methods.other_adult_cancers.rst.txt b/_sources/reference/tlo.methods.other_adult_cancers.rst.txt index 1cc9aad918..8a6cc3a317 100644 --- a/_sources/reference/tlo.methods.other_adult_cancers.rst.txt +++ b/_sources/reference/tlo.methods.other_adult_cancers.rst.txt @@ -124,13 +124,13 @@ tlo.methods.other_adult_cancers module **Class attributes:** - CAUSES_OF_DEATH : {'OtherAdultCancer': } + CAUSES_OF_DEATH : {'OtherAdultCancer': } - CAUSES_OF_DISABILITY : {'OtherAdultCancer': } + CAUSES_OF_DISABILITY : {'OtherAdultCancer': } - INIT_DEPENDENCIES : {'HealthSystem', 'Demography', 'SymptomManager'} + INIT_DEPENDENCIES : {'Demography', 'HealthSystem', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden', 'Hiv'} diff --git a/_sources/reference/tlo.methods.postnatal_supervisor.rst.txt b/_sources/reference/tlo.methods.postnatal_supervisor.rst.txt index 15f3e8684a..f738afaa77 100644 --- a/_sources/reference/tlo.methods.postnatal_supervisor.rst.txt +++ b/_sources/reference/tlo.methods.postnatal_supervisor.rst.txt @@ -220,15 +220,15 @@ tlo.methods.postnatal_supervisor module **Class attributes:** - ADDITIONAL_DEPENDENCIES : {'Lifestyle', 'NewbornOutcomes', 'PregnancySupervisor', 'Labour'} + ADDITIONAL_DEPENDENCIES : {'Labour', 'Lifestyle', 'PregnancySupervisor', 'NewbornOutcomes'} - CAUSES_OF_DEATH : {'secondary_postpartum_haemorrhage': , 'postpartum_sepsis': , 'severe_pre_eclampsia': , 'eclampsia': , 'severe_gestational_hypertension': , 'early_onset_sepsis': , 'late_onset_sepsis': } + CAUSES_OF_DEATH : {'secondary_postpartum_haemorrhage': , 'postpartum_sepsis': , 'severe_pre_eclampsia': , 'eclampsia': , 'severe_gestational_hypertension': , 'early_onset_sepsis': , 'late_onset_sepsis': } - CAUSES_OF_DISABILITY : {'maternal': } + CAUSES_OF_DISABILITY : {'maternal': } - INIT_DEPENDENCIES : {'HealthSystem', 'Demography'} + INIT_DEPENDENCIES : {'Demography', 'HealthSystem'} - METADATA : {, , } + METADATA : {, , } __annotations__ : {} diff --git a/_sources/reference/tlo.methods.pregnancy_supervisor.rst.txt b/_sources/reference/tlo.methods.pregnancy_supervisor.rst.txt index a8a1e3bef8..31aa771663 100644 --- a/_sources/reference/tlo.methods.pregnancy_supervisor.rst.txt +++ b/_sources/reference/tlo.methods.pregnancy_supervisor.rst.txt @@ -436,17 +436,17 @@ tlo.methods.pregnancy_supervisor module **Class attributes:** - ADDITIONAL_DEPENDENCIES : {'HealthSystem', 'Contraception', 'Labour', 'Lifestyle', 'CareOfWomenDuringPregnancy'} + ADDITIONAL_DEPENDENCIES : {'HealthSystem', 'Lifestyle', 'Labour', 'Contraception', 'CareOfWomenDuringPregnancy'} - CAUSES_OF_DEATH : {'ectopic_pregnancy': , 'spontaneous_abortion': , 'induced_abortion': , 'antepartum_haemorrhage': , 'severe_gestational_hypertension': , 'severe_pre_eclampsia': , 'eclampsia': , 'antenatal_sepsis': } + CAUSES_OF_DEATH : {'ectopic_pregnancy': , 'spontaneous_abortion': , 'induced_abortion': , 'antepartum_haemorrhage': , 'severe_gestational_hypertension': , 'severe_pre_eclampsia': , 'eclampsia': , 'antenatal_sepsis': } - CAUSES_OF_DISABILITY : {'maternal': } + CAUSES_OF_DISABILITY : {'maternal': } INIT_DEPENDENCIES : {'Demography'} - METADATA : {, } + METADATA : {, } - OPTIONAL_INIT_DEPENDENCIES : {'Malaria', 'HealthBurden', 'CardioMetabolicDisorders', 'Hiv'} + OPTIONAL_INIT_DEPENDENCIES : {'CardioMetabolicDisorders', 'HealthBurden', 'Malaria', 'Hiv'} __annotations__ : {} diff --git a/_sources/reference/tlo.methods.prostate_cancer.rst.txt b/_sources/reference/tlo.methods.prostate_cancer.rst.txt index de23774f2e..f7e09151a2 100644 --- a/_sources/reference/tlo.methods.prostate_cancer.rst.txt +++ b/_sources/reference/tlo.methods.prostate_cancer.rst.txt @@ -130,13 +130,13 @@ tlo.methods.prostate_cancer module **Class attributes:** - CAUSES_OF_DEATH : {'ProstateCancer': } + CAUSES_OF_DEATH : {'ProstateCancer': } - CAUSES_OF_DISABILITY : {'ProstateCancer': } + CAUSES_OF_DISABILITY : {'ProstateCancer': } - INIT_DEPENDENCIES : {'HealthSystem', 'Demography', 'SymptomManager'} + INIT_DEPENDENCIES : {'Demography', 'HealthSystem', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden'} diff --git a/_sources/reference/tlo.methods.rti.rst.txt b/_sources/reference/tlo.methods.rti.rst.txt index 3d8c8eb044..26559060a1 100644 --- a/_sources/reference/tlo.methods.rti.rst.txt +++ b/_sources/reference/tlo.methods.rti.rst.txt @@ -808,11 +808,11 @@ tlo.methods.rti module **Class attributes:** - ADDITIONAL_DEPENDENCIES : {'Lifestyle', 'HealthSystem', 'Demography'} + ADDITIONAL_DEPENDENCIES : {'Demography', 'Lifestyle', 'HealthSystem'} - CAUSES_OF_DEATH : {'RTI_death_without_med': , 'RTI_death_with_med': , 'RTI_unavailable_med': , 'RTI_imm_death': , 'RTI_death_shock': } + CAUSES_OF_DEATH : {'RTI_death_without_med': , 'RTI_death_with_med': , 'RTI_unavailable_med': , 'RTI_imm_death': , 'RTI_death_shock': } - CAUSES_OF_DISABILITY : {'RTI': } + CAUSES_OF_DISABILITY : {'RTI': } DATE_TO_REMOVE_DALY_COLUMNS : ['rt_date_to_remove_daly_1', 'rt_date_to_remove_daly_2', 'rt_date_to_remove_daly_3', 'rt_date_to_remove_daly_4', 'rt_date_to_remove_daly_5', 'rt_date_to_remove_daly_6', 'rt_date_to_remove_daly_7', 'rt_date_to_remove_daly_8'] @@ -830,7 +830,7 @@ tlo.methods.rti module INJURY_INDICES : range(1, 9) - METADATA : {, , , } + METADATA : {, , , } NO_TREATMENT_RECOVERY_TIMES_IN_DAYS : {'112': 49, '113': 49, '1101': 7, '211': 49, '212': 49, '241': 7, '2101': 7, '291': 7, '342': 42, '343': 42, '361': 7, '363': 14, '322': 42, '323': 42, '3101': 7, '3113': 56, '412': 35, '414': 365, '461': 7, '463': 14, '453a': 84, '453b': 84, '441': 14, '442': 14, '4101': 7, '552': 90, '553': 90, '554': 90, '5101': 7, '5113': 56, '612': 63, '712a': 70, '712b': 70, '722': 84, '7101': 7, '7113': 56, '813do': 240, '811': 70, '812': 70, '813eo': 240, '813bo': 240, '813co': 240, '822a': 60, '822b': 180, '8101': 7, '8113': 56} diff --git a/_sources/reference/tlo.methods.schisto.rst.txt b/_sources/reference/tlo.methods.schisto.rst.txt index 3cd26fd819..dbb9a07f0d 100644 --- a/_sources/reference/tlo.methods.schisto.rst.txt +++ b/_sources/reference/tlo.methods.schisto.rst.txt @@ -60,11 +60,11 @@ tlo.methods.schisto module CAUSES_OF_DEATH : {} - CAUSES_OF_DISABILITY : {'Schistosomiasis': } + CAUSES_OF_DISABILITY : {'Schistosomiasis': } INIT_DEPENDENCIES : {'Demography', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthSystem', 'HealthBurden'} diff --git a/_sources/reference/tlo.methods.simplified_births.rst.txt b/_sources/reference/tlo.methods.simplified_births.rst.txt index 4f3bb8f59f..aeb3168b3b 100644 --- a/_sources/reference/tlo.methods.simplified_births.rst.txt +++ b/_sources/reference/tlo.methods.simplified_births.rst.txt @@ -70,7 +70,7 @@ tlo.methods.simplified_births module **Class attributes:** - ALTERNATIVE_TO : {'PregnancySupervisor', 'Contraception', 'Labour', 'NewbornOutcomes', 'PostnatalSupervisor'} + ALTERNATIVE_TO : {'Labour', 'Contraception', 'PregnancySupervisor', 'PostnatalSupervisor', 'NewbornOutcomes'} INIT_DEPENDENCIES : {'Demography'} diff --git a/_sources/reference/tlo.methods.skeleton.rst.txt b/_sources/reference/tlo.methods.skeleton.rst.txt index 836668ffbb..baca6b6f7d 100644 --- a/_sources/reference/tlo.methods.skeleton.rst.txt +++ b/_sources/reference/tlo.methods.skeleton.rst.txt @@ -42,13 +42,13 @@ tlo.methods.skeleton module ADDITIONAL_DEPENDENCIES : {'HealthSystem'} - CAUSES_OF_DEATH : {'tlo_name_of_a_cause_of_death_in_this_module': } + CAUSES_OF_DEATH : {'tlo_name_of_a_cause_of_death_in_this_module': } - CAUSES_OF_DISABILITY : {'tlo_name_of_a_cause_of_disability_in_this_module': } + CAUSES_OF_DISABILITY : {'tlo_name_of_a_cause_of_disability_in_this_module': } INIT_DEPENDENCIES : {'Demography'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden'} diff --git a/_sources/reference/tlo.methods.stunting.rst.txt b/_sources/reference/tlo.methods.stunting.rst.txt index a5f049ed13..72f020affb 100644 --- a/_sources/reference/tlo.methods.stunting.rst.txt +++ b/_sources/reference/tlo.methods.stunting.rst.txt @@ -130,7 +130,7 @@ tlo.methods.stunting module **Class attributes:** - INIT_DEPENDENCIES : {'Diarrhoea', 'Demography', 'Hiv', 'NewbornOutcomes', 'Wasting'} + INIT_DEPENDENCIES : {'Demography', 'Hiv', 'Wasting', 'Diarrhoea', 'NewbornOutcomes'} METADATA : {, } @@ -284,7 +284,7 @@ tlo.methods.stunting module **Class attributes:** - ALTERNATIVE_TO : {'Diarrhoea', 'Wasting', 'Hiv'} + ALTERNATIVE_TO : {'Wasting', 'Hiv', 'Diarrhoea'} INIT_DEPENDENCIES : {'Demography'} diff --git a/_sources/reference/tlo.methods.tb.rst.txt b/_sources/reference/tlo.methods.tb.rst.txt index 53684830a3..7ef4466dc6 100644 --- a/_sources/reference/tlo.methods.tb.rst.txt +++ b/_sources/reference/tlo.methods.tb.rst.txt @@ -298,13 +298,13 @@ tlo.methods.tb module **Class attributes:** - CAUSES_OF_DEATH : {'TB': , 'AIDS_TB': } + CAUSES_OF_DEATH : {'TB': , 'AIDS_TB': } - CAUSES_OF_DISABILITY : {'TB': } + CAUSES_OF_DISABILITY : {'TB': } - INIT_DEPENDENCIES : {'HealthSystem', 'Demography', 'SymptomManager', 'Lifestyle', 'Epi'} + INIT_DEPENDENCIES : {'HealthSystem', 'Lifestyle', 'Demography', 'Epi', 'SymptomManager'} - METADATA : {, , , } + METADATA : {, , , } OPTIONAL_INIT_DEPENDENCIES : {'HealthBurden', 'Hiv'} @@ -572,7 +572,7 @@ tlo.methods.tb module **Class attributes:** - EXPECTED_APPT_FOOTPRINT : + EXPECTED_APPT_FOOTPRINT : __annotations__ : {} diff --git a/_static/documentation_options.js b/_static/documentation_options.js index d66e129903..b0304c0a01 100644 --- a/_static/documentation_options.js +++ b/_static/documentation_options.js @@ -1,5 +1,5 @@ const DOCUMENTATION_OPTIONS = { - VERSION: '0.1.dev2476+g58256ce', + VERSION: '0.1.dev2485+gd6fcffd.d20241213', LANGUAGE: 'en', COLLAPSE_INDEX: false, BUILDER: 'html', diff --git a/aims.html b/aims.html index e79213198e..767f32032e 100644 --- a/aims.html +++ b/aims.html @@ -6,7 +6,7 @@ - Aims & Objectives — TLOmodel 0.1.dev2476+g58256ce documentation + Aims & Objectives — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/azure_batch.html b/azure_batch.html index b68aeec1cb..93d39d0208 100644 --- a/azure_batch.html +++ b/azure_batch.html @@ -6,7 +6,7 @@ - Using Azure Batch — TLOmodel 0.1.dev2476+g58256ce documentation + Using Azure Batch — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/contributing.html b/contributing.html index cdd309eaa4..5728360d39 100644 --- a/contributing.html +++ b/contributing.html @@ -6,7 +6,7 @@ - Contributing — TLOmodel 0.1.dev2476+g58256ce documentation + Contributing — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/contributors.html b/contributors.html index 011cc8d454..a4282d9ba6 100644 --- a/contributors.html +++ b/contributors.html @@ -6,7 +6,7 @@ - Contributors — TLOmodel 0.1.dev2476+g58256ce documentation + Contributors — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/data_sources.html b/data_sources.html index 27b686aac2..d13aa56a5e 100644 --- a/data_sources.html +++ b/data_sources.html @@ -6,7 +6,7 @@ - Data Sources — TLOmodel 0.1.dev2476+g58256ce documentation + Data Sources — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/genindex.html b/genindex.html index cdd303ab56..782e6c22a2 100644 --- a/genindex.html +++ b/genindex.html @@ -5,7 +5,7 @@ - Index — TLOmodel 0.1.dev2476+g58256ce documentation + Index — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -14,7 +14,7 @@ - + @@ -3623,6 +3623,8 @@

P

  • ParameterUpdateEvent (class in tlo.methods.pregnancy_supervisor)
  • parse_arguments() (BaseScenario method) +
    • +
  • parse_csv_values_for_columns_with_mixed_datatypes() (in module tlo.util)
  • parse_log_file() (in module tlo.analysis.utils)
    • diff --git a/getting_started.html b/getting_started.html index eeec6824dc..f4d981fd34 100644 --- a/getting_started.html +++ b/getting_started.html @@ -6,7 +6,7 @@ - Getting Started — TLOmodel 0.1.dev2476+g58256ce documentation + Getting Started — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/hsi_events.html b/hsi_events.html index 9d3e15524b..66e5f82871 100644 --- a/hsi_events.html +++ b/hsi_events.html @@ -6,7 +6,7 @@ - Health system interaction events — TLOmodel 0.1.dev2476+g58256ce documentation + Health system interaction events — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/ibm_course.html b/ibm_course.html index 97f495cf85..74c9d46b6b 100644 --- a/ibm_course.html +++ b/ibm_course.html @@ -6,7 +6,7 @@ - Building and Understanding Individual Based Models to Inform Health Policy — TLOmodel 0.1.dev2476+g58256ce documentation + Building and Understanding Individual Based Models to Inform Health Policy — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/index.html b/index.html index f60a09af13..40b48896c5 100644 --- a/index.html +++ b/index.html @@ -6,7 +6,7 @@ - Welcome — TLOmodel 0.1.dev2476+g58256ce documentation + Welcome — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -93,6 +93,7 @@

    Welcome

  • Imperial College London

  • University College London

  • University of York

    • +

  • East, Central and Southern Africa Health Community (ECSA-HC)

    • It benefits from a close partnership between this team and the Ministry of Health, Malawi.

    @@ -106,7 +107,7 @@

    Open Source Code Repository

    Last Update

    -

    This project is under active development. The last update was: Nov 25, 2024

    +

    This project is under active development. The last update was: Dec 13, 2024

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    - Parameters — TLOmodel 0.1.dev2476+g58256ce documentation + Parameters — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -3494,13 +3494,13 @@

    Northern -

    Chitipa

    +

    Nkhata Bay

    +

    Chitipa

    Mzimba

    Likoma

    Mzuzu City

    -

    Nkhata Bay

    -

    Karonga

    Rumphi

    +

    Karonga

    @@ -3522,16 +3522,16 @@

    Central -

    Mchinji

    -

    Ntchisi

    -

    Dedza

    -

    Lilongwe

    -

    Lilongwe City

    +

    Ntcheu

    Dowa

    -

    Nkhotakota

    -

    Salima

    -

    Ntcheu

    +

    Lilongwe City

    Kasungu

    +

    Lilongwe

    +

    Dedza

    +

    Ntchisi

    +

    Salima

    +

    Nkhotakota

    +

    Mchinji

    @@ -3558,21 +3558,21 @@

    Southern -

    Neno

    -

    Chikwawa

    +

    Zomba

    Zomba City

    -

    Blantyre

    -

    Phalombe

    -

    Thyolo

    -

    Mwanza

    Mangochi

    +

    Phalombe

    +

    Balaka

    +

    Neno

    Machinga

    Mulanje

    -

    Balaka

    +

    Nsanje

    Chiradzulu

    -

    Zomba

    +

    Chikwawa

    +

    Blantyre

    +

    Thyolo

    Blantyre City

    -

    Nsanje

    +

    Mwanza

    @@ -10264,26 +10264,6 @@

    Malaria -

    interv

    -

    data frame of intervention coverage by year

    -

    Dataframe

    -

    …

    - -

    clin_inc

    -

    data frame of clinical incidence by age, district, intervention coverage

    -

    Dataframe

    -

    …

    - -

    inf_inc

    -

    data frame of infection incidence by age, district, intervention coverage

    -

    Dataframe

    -

    …

    - -

    sev_inc

    -

    data frame of severe case incidence by age, district, intervention coverage

    -

    Dataframe

    -

    …

    -

    itn_district

    data frame of ITN usage rates by district

    Dataframe

    @@ -10456,466 +10436,6 @@

    Malaria -
    -

    interv

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    Year

    ITN_coverage

    IRS_coverage

    ACT_coverage

    MIS_sleptUnderITN

    MIS_IPTp_1dose

    MIS_IPTp_2dose

    MIS_IPTp_3dose

    2001

    0

    0

    0

    nan

    nan

    nan

    nan

    2002

    0

    0

    0

    nan

    nan

    nan

    nan

    2003

    0.0337

    0

    0

    0.02022

    nan

    nan

    nan

    2004

    0.1149

    0

    0.011

    0.06894

    nan

    nan

    nan

    2005

    0.2636

    0

    0.0269

    0.15816

    nan

    nan

    nan

    2006

    0.2405

    0

    0.0538

    0.1443

    nan

    nan

    nan

    2007

    0.2865

    0.00712375

    0.0898

    0.1719

    nan

    nan

    nan

    2008

    0.3185

    0.00698449

    0.1382

    0.1911

    nan

    nan

    nan

    2009

    0.2908

    0.0198598

    0.2082

    0.17448

    nan

    nan

    nan

    -

    Only first 10 rows of 26 are shown.

    -
    -
    -

    clin_inc

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    Unnamed: 0

    admin

    llin

    irs

    month

    inc_age_gp

    clin_incidence

    age

    monthly_inc_clin

    monthly_prob_clin

    1

    Balaka

    0.1

    0.8

    2

    clin_inc_0_0.5

    0.616651

    0

    0.0513875

    0.0500895

    2

    Balaka

    0.1

    0.8

    3

    clin_inc_0_0.5

    0.724266

    0

    0.0603555

    0.0585702

    3

    Balaka

    0.1

    0.8

    4

    clin_inc_0_0.5

    0.487449

    0

    0.0406208

    0.0398068

    4

    Balaka

    0.1

    0.8

    5

    clin_inc_0_0.5

    0.221309

    0

    0.0184424

    0.0182734

    5

    Balaka

    0.1

    0.8

    6

    clin_inc_0_0.5

    0.0654417

    0

    0.00545347

    0.00543863

    6

    Balaka

    0.1

    0.8

    7

    clin_inc_0_0.5

    0.00924685

    0

    0.000770571

    0.000770274

    7

    Balaka

    0.1

    0.8

    8

    clin_inc_0_0.5

    0.0258359

    0

    0.00215299

    0.00215068

    8

    Balaka

    0.1

    0.8

    9

    clin_inc_0_0.5

    0.0592395

    0

    0.00493663

    0.00492446

    9

    Balaka

    0.1

    0.8

    10

    clin_inc_0_0.5

    0.0234651

    0

    0.00195542

    0.00195351

    -

    Only first 10 rows of 497664 are shown.

    -
    -
    -

    inf_inc

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    Unnamed: 0

    admin

    llin

    irs

    month

    inf_inc_age_gp

    inf_incidence

    age

    monthly_inc_inf

    monthly_prob_inf

    1

    Balaka

    0.1

    0.8

    2

    inf_inc_0_0.5

    1.19984

    0

    0.0999865

    0.0951504

    2

    Balaka

    0.1

    0.8

    3

    inf_inc_0_0.5

    1.42709

    0

    0.118924

    0.112125

    3

    Balaka

    0.1

    0.8

    4

    inf_inc_0_0.5

    0.955087

    0

    0.0795906

    0.0765057

    4

    Balaka

    0.1

    0.8

    5

    inf_inc_0_0.5

    0.464054

    0

    0.0386712

    0.037933

    5

    Balaka

    0.1

    0.8

    6

    inf_inc_0_0.5

    0.122824

    0

    0.0102353

    0.0101831

    6

    Balaka

    0.1

    0.8

    7

    inf_inc_0_0.5

    0.0174689

    0

    0.00145575

    0.00145469

    7

    Balaka

    0.1

    0.8

    8

    inf_inc_0_0.5

    0.0559292

    0

    0.00466077

    0.00464993

    8

    Balaka

    0.1

    0.8

    9

    inf_inc_0_0.5

    0.110247

    0

    0.00918724

    0.00914517

    9

    Balaka

    0.1

    0.8

    10

    inf_inc_0_0.5

    0.0416001

    0

    0.00346667

    0.00346067

    -

    Only first 10 rows of 497664 are shown.

    -
    -
    -

    sev_inc

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    Unnamed: 0

    admin

    llin

    irs

    month

    sev_inc_age_gp

    sev_incidence

    age

    monthly_inc_sev

    monthly_prob_sev

    1

    Balaka

    0.1

    0.8

    2

    sev_inc_0_0.5

    0.039965

    0

    0.00333041

    0.00332487

    2

    Balaka

    0.1

    0.8

    3

    sev_inc_0_0.5

    0.0449733

    0

    0.00374778

    0.00374076

    3

    Balaka

    0.1

    0.8

    4

    sev_inc_0_0.5

    0.0293607

    0

    0.00244672

    0.00244373

    4

    Balaka

    0.1

    0.8

    5

    sev_inc_0_0.5

    0.0133483

    0

    0.00111236

    0.00111174

    5

    Balaka

    0.1

    0.8

    6

    sev_inc_0_0.5

    0.00411232

    0

    0.000342693

    0.000342634

    6

    Balaka

    0.1

    0.8

    7

    sev_inc_0_0.5

    0.000551552

    0

    4.59627e-05

    4.59616e-05

    7

    Balaka

    0.1

    0.8

    8

    sev_inc_0_0.5

    0.00155992

    0

    0.000129993

    0.000129985

    8

    Balaka

    0.1

    0.8

    9

    sev_inc_0_0.5

    0.00409992

    0

    0.00034166

    0.000341602

    9

    Balaka

    0.1

    0.8

    10

    sev_inc_0_0.5

    0.00162945

    0

    0.000135787

    0.000135778

    -

    Only first 10 rows of 497664 are shown.

    -

    itn_district

    diff --git a/publications.html b/publications.html index b732c259da..6e4a4704d3 100644 --- a/publications.html +++ b/publications.html @@ -6,7 +6,7 @@ - Publications — TLOmodel 0.1.dev2476+g58256ce documentation + Publications — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/py-modindex.html b/py-modindex.html index cacba2ba44..88d41a5ec8 100644 --- a/py-modindex.html +++ b/py-modindex.html @@ -5,7 +5,7 @@ - Python Module Index — TLOmodel 0.1.dev2476+g58256ce documentation + Python Module Index — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -14,7 +14,7 @@ - + diff --git a/reference/index.html b/reference/index.html index 43808e8268..72abf8197a 100644 --- a/reference/index.html +++ b/reference/index.html @@ -6,7 +6,7 @@ - Reference — TLOmodel 0.1.dev2476+g58256ce documentation + Reference — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -3052,6 +3052,7 @@

    Referenceget_person_id_to_inherit_from()
  • convert_excel_files_to_csv()
  • read_csv_files()
    • +
  • parse_csv_values_for_columns_with_mixed_datatypes()
    • @@ -8472,6 +8473,7 @@

    Referenceget_person_id_to_inherit_from()
  • convert_excel_files_to_csv()
  • read_csv_files()
    • +
  • parse_csv_values_for_columns_with_mixed_datatypes()
    • diff --git a/reference/modules.html b/reference/modules.html index dc19d3981e..e1549bc4e8 100644 --- a/reference/modules.html +++ b/reference/modules.html @@ -6,7 +6,7 @@ - tlo — TLOmodel 0.1.dev2476+g58256ce documentation + tlo — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -215,6 +215,7 @@

    tloget_person_id_to_inherit_from()
  • convert_excel_files_to_csv()
  • read_csv_files()
    • +
  • parse_csv_values_for_columns_with_mixed_datatypes()
    • diff --git a/reference/tlo.analysis.hsi_events.html b/reference/tlo.analysis.hsi_events.html index ead0b60475..64560f31d5 100644 --- a/reference/tlo.analysis.hsi_events.html +++ b/reference/tlo.analysis.hsi_events.html @@ -6,7 +6,7 @@ - tlo.analysis.hsi_events module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.analysis.hsi_events module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.analysis.html b/reference/tlo.analysis.html index 458c097615..77b2126858 100644 --- a/reference/tlo.analysis.html +++ b/reference/tlo.analysis.html @@ -6,7 +6,7 @@ - tlo.analysis package — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.analysis package — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.analysis.life_expectancy.html b/reference/tlo.analysis.life_expectancy.html index e63531fb58..3f192b9e0c 100644 --- a/reference/tlo.analysis.life_expectancy.html +++ b/reference/tlo.analysis.life_expectancy.html @@ -6,7 +6,7 @@ - tlo.analysis.life_expectancy module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.analysis.life_expectancy module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.analysis.utils.html b/reference/tlo.analysis.utils.html index 9d5725f7aa..c875e6f056 100644 --- a/reference/tlo.analysis.utils.html +++ b/reference/tlo.analysis.utils.html @@ -6,7 +6,7 @@ - tlo.analysis.utils module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.analysis.utils module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.cli.html b/reference/tlo.cli.html index fd24c029c9..bd2b733bcc 100644 --- a/reference/tlo.cli.html +++ b/reference/tlo.cli.html @@ -6,7 +6,7 @@ - tlo.cli module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.cli module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.core.html b/reference/tlo.core.html index a61f7bb401..d782ef759c 100644 --- a/reference/tlo.core.html +++ b/reference/tlo.core.html @@ -6,7 +6,7 @@ - tlo.core module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.core module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.dependencies.html b/reference/tlo.dependencies.html index 482acfe51f..5f86feb829 100644 --- a/reference/tlo.dependencies.html +++ b/reference/tlo.dependencies.html @@ -6,7 +6,7 @@ - tlo.dependencies module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.dependencies module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.docs.html b/reference/tlo.docs.html index f6be87d2bc..357e950b91 100644 --- a/reference/tlo.docs.html +++ b/reference/tlo.docs.html @@ -6,7 +6,7 @@ - tlo.docs module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.docs module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.events.html b/reference/tlo.events.html index 684b1964ed..fdf2ee5cf2 100644 --- a/reference/tlo.events.html +++ b/reference/tlo.events.html @@ -6,7 +6,7 @@ - tlo.events module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.events module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.html b/reference/tlo.html index f64d0da9c0..9cf9f58a7d 100644 --- a/reference/tlo.html +++ b/reference/tlo.html @@ -6,7 +6,7 @@ - tlo package — TLOmodel 0.1.dev2476+g58256ce documentation + tlo package — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -989,6 +989,7 @@

    Submodulesget_person_id_to_inherit_from()
  • convert_excel_files_to_csv()
  • read_csv_files()
    • +
  • parse_csv_values_for_columns_with_mixed_datatypes()
    • diff --git a/reference/tlo.lm.html b/reference/tlo.lm.html index 18eb4a73a8..305f41f001 100644 --- a/reference/tlo.lm.html +++ b/reference/tlo.lm.html @@ -6,7 +6,7 @@ - tlo.lm module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.lm module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.logging.core.html b/reference/tlo.logging.core.html index 18752c6786..76d3ce2604 100644 --- a/reference/tlo.logging.core.html +++ b/reference/tlo.logging.core.html @@ -6,7 +6,7 @@ - tlo.logging.core module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.logging.core module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.logging.encoding.html b/reference/tlo.logging.encoding.html index a7f90326cc..293afb2740 100644 --- a/reference/tlo.logging.encoding.html +++ b/reference/tlo.logging.encoding.html @@ -6,7 +6,7 @@ - tlo.logging.encoding module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.logging.encoding module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.logging.helpers.html b/reference/tlo.logging.helpers.html index 61b943ecbe..ec50413125 100644 --- a/reference/tlo.logging.helpers.html +++ b/reference/tlo.logging.helpers.html @@ -6,7 +6,7 @@ - tlo.logging.helpers module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.logging.helpers module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.logging.html b/reference/tlo.logging.html index d54f3882a3..85528a67ea 100644 --- a/reference/tlo.logging.html +++ b/reference/tlo.logging.html @@ -6,7 +6,7 @@ - tlo.logging package — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.logging package — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.logging.reader.html b/reference/tlo.logging.reader.html index a36137fd1d..b9c051380a 100644 --- a/reference/tlo.logging.reader.html +++ b/reference/tlo.logging.reader.html @@ -6,7 +6,7 @@ - tlo.logging.reader module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.logging.reader module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.alri.html b/reference/tlo.methods.alri.html index 2df409130f..deda0e8c47 100644 --- a/reference/tlo.methods.alri.html +++ b/reference/tlo.methods.alri.html @@ -6,7 +6,7 @@ - tlo.methods.alri module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.alri module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -667,10 +667,10 @@

    Overview

    Class attributes:

    -

    CAUSES_OF_DEATH : {‘ALRI_Enterobacteriaceae’: <tlo.methods.causes.Cause object at 0x14f280110>, ‘ALRI_H.influenzae_non_type_b’: <tlo.methods.causes.Cause object at 0x14f280150>, ‘ALRI_HMPV’: <tlo.methods.causes.Cause object at 0x14f280210>, ‘ALRI_Hib’: <tlo.methods.causes.Cause object at 0x14f280290>, ‘ALRI_Influenza’: <tlo.methods.causes.Cause object at 0x14f280310>, ‘ALRI_P.jirovecii’: <tlo.methods.causes.Cause object at 0x14f280350>, ‘ALRI_Parainfluenza’: <tlo.methods.causes.Cause object at 0x14f280390>, ‘ALRI_RSV’: <tlo.methods.causes.Cause object at 0x14f280410>, ‘ALRI_Rhinovirus’: <tlo.methods.causes.Cause object at 0x14f280490>, ‘ALRI_Staph_aureus’: <tlo.methods.causes.Cause object at 0x14f2804d0>, ‘ALRI_Strep_pneumoniae_PCV13’: <tlo.methods.causes.Cause object at 0x14f280510>, ‘ALRI_Strep_pneumoniae_non_PCV13’: <tlo.methods.causes.Cause object at 0x14f280550>, ‘ALRI_other_Strepto_Enterococci’: <tlo.methods.causes.Cause object at 0x14f280590>, ‘ALRI_other_bacterial_pathogens’: <tlo.methods.causes.Cause object at 0x14f2805d0>, ‘ALRI_other_pathogens_NoS’: <tlo.methods.causes.Cause object at 0x14f280610>, ‘ALRI_other_viral_pathogens’: <tlo.methods.causes.Cause object at 0x14f280650>}

    -

    CAUSES_OF_DISABILITY : {‘ALRI_Enterobacteriaceae’: <tlo.methods.causes.Cause object at 0x14f2806d0>, ‘ALRI_H.influenzae_non_type_b’: <tlo.methods.causes.Cause object at 0x14f280710>, ‘ALRI_HMPV’: <tlo.methods.causes.Cause object at 0x14f280790>, ‘ALRI_Hib’: <tlo.methods.causes.Cause object at 0x14f280810>, ‘ALRI_Influenza’: <tlo.methods.causes.Cause object at 0x14f280890>, ‘ALRI_P.jirovecii’: <tlo.methods.causes.Cause object at 0x14f2808d0>, ‘ALRI_Parainfluenza’: <tlo.methods.causes.Cause object at 0x14f280910>, ‘ALRI_RSV’: <tlo.methods.causes.Cause object at 0x14f280990>, ‘ALRI_Rhinovirus’: <tlo.methods.causes.Cause object at 0x14f280a50>, ‘ALRI_Staph_aureus’: <tlo.methods.causes.Cause object at 0x14f280a90>, ‘ALRI_Strep_pneumoniae_PCV13’: <tlo.methods.causes.Cause object at 0x14f280ad0>, ‘ALRI_Strep_pneumoniae_non_PCV13’: <tlo.methods.causes.Cause object at 0x14f280b10>, ‘ALRI_other_Strepto_Enterococci’: <tlo.methods.causes.Cause object at 0x14f280b50>, ‘ALRI_other_bacterial_pathogens’: <tlo.methods.causes.Cause object at 0x14f280b90>, ‘ALRI_other_pathogens_NoS’: <tlo.methods.causes.Cause object at 0x14f280bd0>, ‘ALRI_other_viral_pathogens’: <tlo.methods.causes.Cause object at 0x14f280c10>}

    -

    INIT_DEPENDENCIES : {‘Demography’, ‘Hiv’, ‘SymptomManager’, ‘Lifestyle’, ‘NewbornOutcomes’, ‘Wasting’, ‘Epi’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘ALRI_Enterobacteriaceae’: <tlo.methods.causes.Cause object at 0x15e035010>, ‘ALRI_H.influenzae_non_type_b’: <tlo.methods.causes.Cause object at 0x15dc3d6d0>, ‘ALRI_HMPV’: <tlo.methods.causes.Cause object at 0x15e0350d0>, ‘ALRI_Hib’: <tlo.methods.causes.Cause object at 0x15e035150>, ‘ALRI_Influenza’: <tlo.methods.causes.Cause object at 0x15e0351d0>, ‘ALRI_P.jirovecii’: <tlo.methods.causes.Cause object at 0x15e035210>, ‘ALRI_Parainfluenza’: <tlo.methods.causes.Cause object at 0x15e035250>, ‘ALRI_RSV’: <tlo.methods.causes.Cause object at 0x15e0352d0>, ‘ALRI_Rhinovirus’: <tlo.methods.causes.Cause object at 0x15e035350>, ‘ALRI_Staph_aureus’: <tlo.methods.causes.Cause object at 0x15e035390>, ‘ALRI_Strep_pneumoniae_PCV13’: <tlo.methods.causes.Cause object at 0x15e0353d0>, ‘ALRI_Strep_pneumoniae_non_PCV13’: <tlo.methods.causes.Cause object at 0x15e035410>, ‘ALRI_other_Strepto_Enterococci’: <tlo.methods.causes.Cause object at 0x15e035450>, ‘ALRI_other_bacterial_pathogens’: <tlo.methods.causes.Cause object at 0x15e035490>, ‘ALRI_other_pathogens_NoS’: <tlo.methods.causes.Cause object at 0x15e0354d0>, ‘ALRI_other_viral_pathogens’: <tlo.methods.causes.Cause object at 0x15e035510>}

    +

    CAUSES_OF_DISABILITY : {‘ALRI_Enterobacteriaceae’: <tlo.methods.causes.Cause object at 0x15e035590>, ‘ALRI_H.influenzae_non_type_b’: <tlo.methods.causes.Cause object at 0x15e0355d0>, ‘ALRI_HMPV’: <tlo.methods.causes.Cause object at 0x15e035650>, ‘ALRI_Hib’: <tlo.methods.causes.Cause object at 0x15e0356d0>, ‘ALRI_Influenza’: <tlo.methods.causes.Cause object at 0x15e035750>, ‘ALRI_P.jirovecii’: <tlo.methods.causes.Cause object at 0x15e035790>, ‘ALRI_Parainfluenza’: <tlo.methods.causes.Cause object at 0x15e0357d0>, ‘ALRI_RSV’: <tlo.methods.causes.Cause object at 0x15e035850>, ‘ALRI_Rhinovirus’: <tlo.methods.causes.Cause object at 0x15e035910>, ‘ALRI_Staph_aureus’: <tlo.methods.causes.Cause object at 0x15e035950>, ‘ALRI_Strep_pneumoniae_PCV13’: <tlo.methods.causes.Cause object at 0x15e035990>, ‘ALRI_Strep_pneumoniae_non_PCV13’: <tlo.methods.causes.Cause object at 0x15e0359d0>, ‘ALRI_other_Strepto_Enterococci’: <tlo.methods.causes.Cause object at 0x15e035a10>, ‘ALRI_other_bacterial_pathogens’: <tlo.methods.causes.Cause object at 0x15e035a50>, ‘ALRI_other_pathogens_NoS’: <tlo.methods.causes.Cause object at 0x15e035a90>, ‘ALRI_other_viral_pathogens’: <tlo.methods.causes.Cause object at 0x15e035ad0>}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘Lifestyle’, ‘Hiv’, ‘Epi’, ‘Wasting’, ‘SymptomManager’, ‘NewbornOutcomes’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’}

    __annotations__ : {}

    all_pathogens : [‘Enterobacteriaceae’, ‘H.influenzae_non_type_b’, ‘HMPV’, ‘Hib’, ‘Influenza’, ‘P.jirovecii’, ‘Parainfluenza’, ‘RSV’, ‘Rhinovirus’, ‘Staph_aureus’, ‘Strep_pneumoniae_PCV13’, ‘Strep_pneumoniae_non_PCV13’, ‘other_Strepto_Enterococci’, ‘other_bacterial_pathogens’, ‘other_pathogens_NoS’, ‘other_viral_pathogens’]

    @@ -907,7 +907,7 @@

    Overview

    Bases: tlo.events.RegularEvent, tlo.events.Event, tlo.events.PopulationScopeEventMixin

    Class attributes:

    __annotations__ : {}

    -

    fraction_of_year_between_polling_event : <property object at 0x14f2847c0>

    +

    fraction_of_year_between_polling_event : <property object at 0x15e038900>

    Functions (defined or overridden in class AlriPollingEvent):

    @@ -1186,7 +1186,7 @@

    Overview

    Bases: tlo.methods.hsi_event.HSI_Event, tlo.events.IndividualScopeEventMixin

    Class attributes:

    __annotations__ : {}

    -

    _is_as_in_patient : <property object at 0x14f284a40>

    +

    _is_as_in_patient : <property object at 0x15e038b80>

    Functions (defined or overridden in class HSI_Alri_Treatment):

    @@ -1603,7 +1603,7 @@

    Overview

    Class attributes:

    -

    ALTERNATIVE_TO : {‘Hiv’, ‘Wasting’, ‘Epi’}

    +

    ALTERNATIVE_TO : {‘Wasting’, ‘Hiv’, ‘Epi’}

    INIT_DEPENDENCIES : {‘Demography’}

    __annotations__ : {}

    Functions (defined or overridden in class AlriPropertiesOfOtherModules):

    diff --git a/reference/tlo.methods.bed_days.html b/reference/tlo.methods.bed_days.html index 30154d2e2e..e00fcad232 100644 --- a/reference/tlo.methods.bed_days.html +++ b/reference/tlo.methods.bed_days.html @@ -6,7 +6,7 @@ - tlo.methods.bed_days module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.bed_days module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.bladder_cancer.html b/reference/tlo.methods.bladder_cancer.html index 415e7a5b30..451fae5706 100644 --- a/reference/tlo.methods.bladder_cancer.html +++ b/reference/tlo.methods.bladder_cancer.html @@ -6,7 +6,7 @@ - tlo.methods.bladder_cancer module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.bladder_cancer module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -291,10 +291,10 @@

    Class attributes:

    -

    CAUSES_OF_DEATH : {‘BladderCancer’: <tlo.methods.causes.Cause object at 0x33f396110>}

    -

    CAUSES_OF_DISABILITY : {‘BladderCancer’: <tlo.methods.causes.Cause object at 0x33f3942d0>}

    -

    INIT_DEPENDENCIES : {‘Lifestyle’, ‘HealthSystem’, ‘Demography’, ‘SymptomManager’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘BladderCancer’: <tlo.methods.causes.Cause object at 0x16add18d0>}

    +

    CAUSES_OF_DISABILITY : {‘BladderCancer’: <tlo.methods.causes.Cause object at 0x16add0890>}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘Lifestyle’, ‘HealthSystem’, ‘SymptomManager’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’, ‘Schisto’}

    __annotations__ : {}

    Functions (defined or overridden in class BladderCancer):

    diff --git a/reference/tlo.methods.breast_cancer.html b/reference/tlo.methods.breast_cancer.html index 2df379214c..32ae8da221 100644 --- a/reference/tlo.methods.breast_cancer.html +++ b/reference/tlo.methods.breast_cancer.html @@ -6,7 +6,7 @@ - tlo.methods.breast_cancer module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.breast_cancer module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -270,10 +270,10 @@

    Class attributes:

    -

    CAUSES_OF_DEATH : {‘BreastCancer’: <tlo.methods.causes.Cause object at 0x33f714410>}

    -

    CAUSES_OF_DISABILITY : {‘BreastCancer’: <tlo.methods.causes.Cause object at 0x33f714710>}

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’, ‘SymptomManager’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘BreastCancer’: <tlo.methods.causes.Cause object at 0x16ad2d410>}

    +

    CAUSES_OF_DISABILITY : {‘BreastCancer’: <tlo.methods.causes.Cause object at 0x16ad2c910>}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘HealthSystem’, ‘SymptomManager’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’}

    __annotations__ : {}

    Functions (defined or overridden in class BreastCancer):

    diff --git a/reference/tlo.methods.cancer_consumables.html b/reference/tlo.methods.cancer_consumables.html index c8019ccd52..7fe6b96d0f 100644 --- a/reference/tlo.methods.cancer_consumables.html +++ b/reference/tlo.methods.cancer_consumables.html @@ -6,7 +6,7 @@ - tlo.methods.cancer_consumables module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.cancer_consumables module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.cardio_metabolic_disorders.html b/reference/tlo.methods.cardio_metabolic_disorders.html index 9a7eec71e5..b50cfe196b 100644 --- a/reference/tlo.methods.cardio_metabolic_disorders.html +++ b/reference/tlo.methods.cardio_metabolic_disorders.html @@ -6,7 +6,7 @@ - tlo.methods.cardio_metabolic_disorders module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.cardio_metabolic_disorders module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -471,10 +471,10 @@

    Class attributes:

    ADDITIONAL_DEPENDENCIES : {‘Depression’}

    -

    CAUSES_OF_DEATH : {‘diabetes’: <tlo.methods.causes.Cause object at 0x33f338190>, ‘chronic_ischemic_hd’: <tlo.methods.causes.Cause object at 0x33f33a650>, ‘ever_heart_attack’: <tlo.methods.causes.Cause object at 0x33f339410>, ‘ever_stroke’: <tlo.methods.causes.Cause object at 0x33f33a850>, ‘chronic_kidney_disease’: <tlo.methods.causes.Cause object at 0x33f33a0d0>}

    -

    CAUSES_OF_DISABILITY : {‘diabetes’: <tlo.methods.causes.Cause object at 0x33f33bfd0>, ‘chronic_ischemic_hd’: <tlo.methods.causes.Cause object at 0x33f339490>, ‘heart_attack’: <tlo.methods.causes.Cause object at 0x33f33ab50>, ‘stroke’: <tlo.methods.causes.Cause object at 0x33f338250>, ‘chronic_kidney_disease’: <tlo.methods.causes.Cause object at 0x33f338610>, ‘lower_back_pain’: <tlo.methods.causes.Cause object at 0x33f338c10>}

    -

    INIT_DEPENDENCIES : {‘Lifestyle’, ‘HealthSystem’, ‘Demography’, ‘SymptomManager’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘diabetes’: <tlo.methods.causes.Cause object at 0x16ad30910>, ‘chronic_ischemic_hd’: <tlo.methods.causes.Cause object at 0x16ad30790>, ‘ever_heart_attack’: <tlo.methods.causes.Cause object at 0x16ad32050>, ‘ever_stroke’: <tlo.methods.causes.Cause object at 0x16ad33a50>, ‘chronic_kidney_disease’: <tlo.methods.causes.Cause object at 0x16ad32a50>}

    +

    CAUSES_OF_DISABILITY : {‘diabetes’: <tlo.methods.causes.Cause object at 0x16ab557d0>, ‘chronic_ischemic_hd’: <tlo.methods.causes.Cause object at 0x16ab57890>, ‘heart_attack’: <tlo.methods.causes.Cause object at 0x16ab56750>, ‘stroke’: <tlo.methods.causes.Cause object at 0x16ab55310>, ‘chronic_kidney_disease’: <tlo.methods.causes.Cause object at 0x16ab55790>, ‘lower_back_pain’: <tlo.methods.causes.Cause object at 0x16ab55b50>}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘Lifestyle’, ‘HealthSystem’, ‘SymptomManager’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’, ‘Hiv’}

    __annotations__ : {}

    condition_date_diagnosis_list : {‘nc_diabetes_date_diagnosis’: DATE === When someone has been diagnosed with diabetes, ‘nc_hypertension_date_diagnosis’: DATE === When someone has been diagnosed with hypertension, ‘nc_chronic_kidney_disease_date_diagnosis’: DATE === When someone has been diagnosed with chronic_kidney_disease, ‘nc_chronic_lower_back_pain_date_diagnosis’: DATE === When someone has been diagnosed with chronic_lower_back_pain, ‘nc_chronic_ischemic_hd_date_diagnosis’: DATE === When someone has been diagnosed with chronic_ischemic_hd}

    diff --git a/reference/tlo.methods.care_of_women_during_pregnancy.html b/reference/tlo.methods.care_of_women_during_pregnancy.html index 6efedeb5a4..6981d1d349 100644 --- a/reference/tlo.methods.care_of_women_during_pregnancy.html +++ b/reference/tlo.methods.care_of_women_during_pregnancy.html @@ -6,7 +6,7 @@ - tlo.methods.care_of_women_during_pregnancy module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.care_of_women_during_pregnancy module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -319,8 +319,8 @@

    Class attributes:

    -

    ADDITIONAL_DEPENDENCIES : {‘Lifestyle’, ‘Contraception’, ‘Labour’}

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’, ‘PregnancySupervisor’}

    +

    ADDITIONAL_DEPENDENCIES : {‘Labour’, ‘Contraception’, ‘Lifestyle’}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘HealthSystem’, ‘PregnancySupervisor’}

    METADATA : {<Metadata.USES_HEALTHSYSTEM: 3>}

    __annotations__ : {}

    Functions (defined or overridden in class CareOfWomenDuringPregnancy):

    diff --git a/reference/tlo.methods.causes.html b/reference/tlo.methods.causes.html index e720c57288..addcb0014a 100644 --- a/reference/tlo.methods.causes.html +++ b/reference/tlo.methods.causes.html @@ -6,7 +6,7 @@ - tlo.methods.causes module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.causes module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.chronicsyndrome.html b/reference/tlo.methods.chronicsyndrome.html index b7c468bf63..2415485020 100644 --- a/reference/tlo.methods.chronicsyndrome.html +++ b/reference/tlo.methods.chronicsyndrome.html @@ -6,7 +6,7 @@ - tlo.methods.chronicsyndrome module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.chronicsyndrome module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -199,10 +199,10 @@

    Class attributes:

    -

    CAUSES_OF_DEATH : {‘ChronicSyndrome’: <tlo.methods.causes.Cause object at 0x14f1d4b10>}

    -

    CAUSES_OF_DISABILITY : {‘ChronicSyndrome’: <tlo.methods.causes.Cause object at 0x14f1d66d0>}

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’, ‘SymptomManager’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘ChronicSyndrome’: <tlo.methods.causes.Cause object at 0x15e3b7a50>}

    +

    CAUSES_OF_DISABILITY : {‘ChronicSyndrome’: <tlo.methods.causes.Cause object at 0x15e3b6010>}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘HealthSystem’, ‘SymptomManager’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’}

    __annotations__ : {}

    Functions (defined or overridden in class ChronicSyndrome):

    diff --git a/reference/tlo.methods.consumables.html b/reference/tlo.methods.consumables.html index fba8417405..4724074077 100644 --- a/reference/tlo.methods.consumables.html +++ b/reference/tlo.methods.consumables.html @@ -6,7 +6,7 @@ - tlo.methods.consumables module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.consumables module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.contraception.html b/reference/tlo.methods.contraception.html index 884af4bb1d..6519fb37e3 100644 --- a/reference/tlo.methods.contraception.html +++ b/reference/tlo.methods.contraception.html @@ -6,7 +6,7 @@ - tlo.methods.contraception module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.contraception module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -247,13 +247,13 @@

    Class attributes:

    -

    ADDITIONAL_DEPENDENCIES : {‘Hiv’, ‘Labour’}

    +

    ADDITIONAL_DEPENDENCIES : {‘Labour’, ‘Hiv’}

    INIT_DEPENDENCIES : {‘Demography’}

    METADATA : {}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthSystem’}

    __annotations__ : {}

    -

    all_contraception_states : {‘IUD’, ‘not_using’, ‘other_traditional’, ‘other_modern’, ‘pill’, ‘injections’, ‘female_sterilization’, ‘periodic_abstinence’, ‘male_condom’, ‘withdrawal’, ‘implant’}

    -

    contraceptives_initiated_with_additional_items : {‘injections’, ‘IUD’, ‘female_sterilization’, ‘pill’, ‘implant’}

    +

    all_contraception_states : {‘injections’, ‘IUD’, ‘withdrawal’, ‘pill’, ‘female_sterilization’, ‘not_using’, ‘periodic_abstinence’, ‘other_modern’, ‘implant’, ‘other_traditional’, ‘male_condom’}

    +

    contraceptives_initiated_with_additional_items : {‘injections’, ‘IUD’, ‘implant’, ‘pill’, ‘female_sterilization’}

    Functions (defined or overridden in class Contraception):

    diff --git a/reference/tlo.methods.copd.html b/reference/tlo.methods.copd.html index f42908a1f9..3ca2a0e339 100644 --- a/reference/tlo.methods.copd.html +++ b/reference/tlo.methods.copd.html @@ -6,7 +6,7 @@ - tlo.methods.copd module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.copd module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -229,10 +229,10 @@

    Class attributes:

    ADDITIONAL_DEPENDENCIES : set()

    -

    CAUSES_OF_DEATH : {‘COPD_cat0’: <tlo.methods.causes.Cause object at 0x33f335150>, ‘COPD_cat1’: <tlo.methods.causes.Cause object at 0x33f337610>, ‘COPD_cat2’: <tlo.methods.causes.Cause object at 0x33f336310>, ‘COPD_cat3’: <tlo.methods.causes.Cause object at 0x33f334650>, ‘COPD_cat4’: <tlo.methods.causes.Cause object at 0x33f336b10>, ‘COPD_cat5’: <tlo.methods.causes.Cause object at 0x33f337dd0>, ‘COPD_cat6’: <tlo.methods.causes.Cause object at 0x33f335950>}

    -

    CAUSES_OF_DISABILITY : {‘COPD’: <tlo.methods.causes.Cause object at 0x33f335c50>}

    -

    INIT_DEPENDENCIES : {‘Lifestyle’, ‘HealthSystem’, ‘SymptomManager’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘COPD_cat0’: <tlo.methods.causes.Cause object at 0x16a9064d0>, ‘COPD_cat1’: <tlo.methods.causes.Cause object at 0x16a906ad0>, ‘COPD_cat2’: <tlo.methods.causes.Cause object at 0x16a907f90>, ‘COPD_cat3’: <tlo.methods.causes.Cause object at 0x16a906b50>, ‘COPD_cat4’: <tlo.methods.causes.Cause object at 0x16a907e90>, ‘COPD_cat5’: <tlo.methods.causes.Cause object at 0x16a905d90>, ‘COPD_cat6’: <tlo.methods.causes.Cause object at 0x16a907110>}

    +

    CAUSES_OF_DISABILITY : {‘COPD’: <tlo.methods.causes.Cause object at 0x16a905bd0>}

    +

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Lifestyle’, ‘SymptomManager’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    __annotations__ : {}

    Functions (defined or overridden in class Copd):

    diff --git a/reference/tlo.methods.demography.html b/reference/tlo.methods.demography.html index 0098734965..7197091140 100644 --- a/reference/tlo.methods.demography.html +++ b/reference/tlo.methods.demography.html @@ -6,7 +6,7 @@ - tlo.methods.demography module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.demography module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.depression.html b/reference/tlo.methods.depression.html index 68a9dbfb0f..3b9cdfe4d9 100644 --- a/reference/tlo.methods.depression.html +++ b/reference/tlo.methods.depression.html @@ -6,7 +6,7 @@ - tlo.methods.depression module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.depression module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -327,10 +327,10 @@

    Class attributes:

    -

    CAUSES_OF_DEATH : {‘Suicide’: <tlo.methods.causes.Cause object at 0x33f8e4110>}

    -

    CAUSES_OF_DISABILITY : {‘SevereDepression’: <tlo.methods.causes.Cause object at 0x33f8e7b90>}

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’, ‘Contraception’, ‘SymptomManager’, ‘Lifestyle’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘Suicide’: <tlo.methods.causes.Cause object at 0x16ae921d0>}

    +

    CAUSES_OF_DISABILITY : {‘SevereDepression’: <tlo.methods.causes.Cause object at 0x16ae90ed0>}

    +

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Lifestyle’, ‘Demography’, ‘Contraception’, ‘SymptomManager’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’, ‘Hiv’}

    __annotations__ : {}

    Functions (defined or overridden in class Depression):

    diff --git a/reference/tlo.methods.diarrhoea.html b/reference/tlo.methods.diarrhoea.html index ff7780b339..17336f3475 100644 --- a/reference/tlo.methods.diarrhoea.html +++ b/reference/tlo.methods.diarrhoea.html @@ -6,7 +6,7 @@ - tlo.methods.diarrhoea module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.diarrhoea module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -593,10 +593,10 @@

    Overview

    Class attributes:

    ADDITIONAL_DEPENDENCIES : {‘Stunting’, ‘Alri’, ‘Epi’}

    -

    CAUSES_OF_DEATH : {‘Diarrhoea_rotavirus’: <tlo.methods.causes.Cause object at 0x33f39ef50>, ‘Diarrhoea_shigella’: <tlo.methods.causes.Cause object at 0x33f39f190>, ‘Diarrhoea_adenovirus’: <tlo.methods.causes.Cause object at 0x33f39d890>, ‘Diarrhoea_cryptosporidium’: <tlo.methods.causes.Cause object at 0x33f39fd10>, ‘Diarrhoea_campylobacter’: <tlo.methods.causes.Cause object at 0x33f39c990>, ‘Diarrhoea_ETEC’: <tlo.methods.causes.Cause object at 0x33f39fe90>, ‘Diarrhoea_sapovirus’: <tlo.methods.causes.Cause object at 0x33f39e2d0>, ‘Diarrhoea_norovirus’: <tlo.methods.causes.Cause object at 0x33f39fe10>, ‘Diarrhoea_astrovirus’: <tlo.methods.causes.Cause object at 0x33f39dc50>, ‘Diarrhoea_tEPEC’: <tlo.methods.causes.Cause object at 0x33f39d790>}

    -

    CAUSES_OF_DISABILITY : {‘Diarrhoea’: <tlo.methods.causes.Cause object at 0x33f39f350>}

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’, ‘Hiv’, ‘SymptomManager’, ‘Lifestyle’, ‘NewbornOutcomes’, ‘Wasting’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘Diarrhoea_rotavirus’: <tlo.methods.causes.Cause object at 0x16ad4a0d0>, ‘Diarrhoea_shigella’: <tlo.methods.causes.Cause object at 0x16ad49fd0>, ‘Diarrhoea_adenovirus’: <tlo.methods.causes.Cause object at 0x16ad49b50>, ‘Diarrhoea_cryptosporidium’: <tlo.methods.causes.Cause object at 0x16ad4ab50>, ‘Diarrhoea_campylobacter’: <tlo.methods.causes.Cause object at 0x16ad4a390>, ‘Diarrhoea_ETEC’: <tlo.methods.causes.Cause object at 0x16ad4ab90>, ‘Diarrhoea_sapovirus’: <tlo.methods.causes.Cause object at 0x16ad4ab10>, ‘Diarrhoea_norovirus’: <tlo.methods.causes.Cause object at 0x16ad4a510>, ‘Diarrhoea_astrovirus’: <tlo.methods.causes.Cause object at 0x16ad4aa10>, ‘Diarrhoea_tEPEC’: <tlo.methods.causes.Cause object at 0x16ad4b310>}

    +

    CAUSES_OF_DISABILITY : {‘Diarrhoea’: <tlo.methods.causes.Cause object at 0x16ad4acd0>}

    +

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Lifestyle’, ‘Demography’, ‘Hiv’, ‘Wasting’, ‘SymptomManager’, ‘NewbornOutcomes’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’}

    __annotations__ : {}

    pathogens : [‘rotavirus’, ‘shigella’, ‘adenovirus’, ‘cryptosporidium’, ‘campylobacter’, ‘ETEC’, ‘sapovirus’, ‘norovirus’, ‘astrovirus’, ‘tEPEC’]

    @@ -1189,7 +1189,7 @@

    Overview

    Class attributes:

    -

    ALTERNATIVE_TO : {‘Alri’, ‘Hiv’, ‘Stunting’, ‘Wasting’, ‘Epi’}

    +

    ALTERNATIVE_TO : {‘Alri’, ‘Hiv’, ‘Epi’, ‘Wasting’, ‘Stunting’}

    INIT_DEPENDENCIES : {‘Demography’}

    __annotations__ : {}

    Functions (defined or overridden in class DiarrhoeaPropertiesOfOtherModules):

    diff --git a/reference/tlo.methods.dxmanager.html b/reference/tlo.methods.dxmanager.html index bc6b3acf8f..2a2062e922 100644 --- a/reference/tlo.methods.dxmanager.html +++ b/reference/tlo.methods.dxmanager.html @@ -6,7 +6,7 @@ - tlo.methods.dxmanager module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.dxmanager module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.enhanced_lifestyle.html b/reference/tlo.methods.enhanced_lifestyle.html index 69484b3f5c..1c9915d1fd 100644 --- a/reference/tlo.methods.enhanced_lifestyle.html +++ b/reference/tlo.methods.enhanced_lifestyle.html @@ -6,7 +6,7 @@ - tlo.methods.enhanced_lifestyle module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.enhanced_lifestyle module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.epi.html b/reference/tlo.methods.epi.html index 862a9a3bf9..0bca5175f5 100644 --- a/reference/tlo.methods.epi.html +++ b/reference/tlo.methods.epi.html @@ -6,7 +6,7 @@ - tlo.methods.epi module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.epi module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -236,7 +236,7 @@

    Class attributes:

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘HealthSystem’}

    METADATA : {<Metadata.USES_HEALTHSYSTEM: 3>}

    __annotations__ : {}

    Functions (defined or overridden in class Epi):

    @@ -415,7 +415,7 @@

    Bases: tlo.methods.hsi_event.HSI_Event, tlo.events.IndividualScopeEventMixin

    Class attributes:

    -

    EXPECTED_APPT_FOOTPRINT : <property object at 0x14f30b6a0>

    +

    EXPECTED_APPT_FOOTPRINT : <property object at 0x15e0c3100>

    __annotations__ : {}

    Functions (defined or overridden in class HsiBaseVaccine):

    diff --git a/reference/tlo.methods.epilepsy.html b/reference/tlo.methods.epilepsy.html index 714542179b..f642ddab31 100644 --- a/reference/tlo.methods.epilepsy.html +++ b/reference/tlo.methods.epilepsy.html @@ -6,7 +6,7 @@ - tlo.methods.epilepsy module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.epilepsy module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -238,10 +238,10 @@

    Class attributes:

    -

    CAUSES_OF_DEATH : {‘Epilepsy’: <tlo.methods.causes.Cause object at 0x33f807f90>}

    -

    CAUSES_OF_DISABILITY : {‘Epilepsy’: <tlo.methods.causes.Cause object at 0x33f807510>}

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’, ‘HealthBurden’, ‘SymptomManager’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘Epilepsy’: <tlo.methods.causes.Cause object at 0x16ae57890>}

    +

    CAUSES_OF_DISABILITY : {‘Epilepsy’: <tlo.methods.causes.Cause object at 0x16ae56110>}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘HealthBurden’, ‘HealthSystem’, ‘SymptomManager’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    TREATMENT_ID : antiepileptic

    __annotations__ : {}

    Functions (defined or overridden in class Epilepsy):

    diff --git a/reference/tlo.methods.equipment.html b/reference/tlo.methods.equipment.html index a2d4169e1d..12525635be 100644 --- a/reference/tlo.methods.equipment.html +++ b/reference/tlo.methods.equipment.html @@ -6,7 +6,7 @@ - tlo.methods.equipment module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.equipment module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.fullmodel.html b/reference/tlo.methods.fullmodel.html index f00a8d450f..383a7a8b52 100644 --- a/reference/tlo.methods.fullmodel.html +++ b/reference/tlo.methods.fullmodel.html @@ -6,7 +6,7 @@ - tlo.methods.fullmodel module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.fullmodel module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.healthburden.html b/reference/tlo.methods.healthburden.html index 890b6a5e51..fadf6f6594 100644 --- a/reference/tlo.methods.healthburden.html +++ b/reference/tlo.methods.healthburden.html @@ -6,7 +6,7 @@ - tlo.methods.healthburden module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.healthburden module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.healthseekingbehaviour.html b/reference/tlo.methods.healthseekingbehaviour.html index 3b989676ba..02d1ce89c7 100644 --- a/reference/tlo.methods.healthseekingbehaviour.html +++ b/reference/tlo.methods.healthseekingbehaviour.html @@ -6,7 +6,7 @@ - tlo.methods.healthseekingbehaviour module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.healthseekingbehaviour module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -198,10 +198,10 @@

    Class attributes:

    ADDITIONAL_DEPENDENCIES : {‘Lifestyle’}

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’, ‘SymptomManager’}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘HealthSystem’, ‘SymptomManager’}

    METADATA : {<Metadata.USES_HEALTHSYSTEM: 3>}

    __annotations__ : {}

    -

    force_any_symptom_to_lead_to_healthcareseeking : <property object at 0x14f590770>

    +

    force_any_symptom_to_lead_to_healthcareseeking : <property object at 0x15e5b0130>

    Functions (defined or overridden in class HealthSeekingBehaviour):

    diff --git a/reference/tlo.methods.healthsystem.html b/reference/tlo.methods.healthsystem.html index e53be90206..2b84215041 100644 --- a/reference/tlo.methods.healthsystem.html +++ b/reference/tlo.methods.healthsystem.html @@ -6,7 +6,7 @@ - tlo.methods.healthsystem module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.healthsystem module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -351,10 +351,10 @@

    Class attributes:

    INIT_DEPENDENCIES : {‘Demography’}

    __annotations__ : {}

    -

    capabilities_today : <property object at 0x14f220400>

    -

    hsi_event_counts : <property object at 0x14f220630>

    -

    never_ran_hsi_event_counts : <property object at 0x14f220680>

    -

    use_funded_or_actual_staffing : <property object at 0x14f2204f0>

    +

    capabilities_today : <property object at 0x15dfd0680>

    +

    hsi_event_counts : <property object at 0x15dfd08b0>

    +

    never_ran_hsi_event_counts : <property object at 0x15dfd0900>

    +

    use_funded_or_actual_staffing : <property object at 0x15dfd0770>

    Functions (defined or overridden in class HealthSystem):

    @@ -1054,7 +1054,7 @@

    Bases: tlo.events.RegularEvent, tlo.events.Event, tlo.events.PopulationScopeEventMixin

    Class attributes:

    __annotations__ : {}

    -

    current_pop_size : <property object at 0x14f220950>

    +

    current_pop_size : <property object at 0x15dfd0bd0>

    Functions (defined or overridden in class DynamicRescalingHRCapabilities):

    diff --git a/reference/tlo.methods.hiv.html b/reference/tlo.methods.hiv.html index 80420effc5..91d6c5bbf0 100644 --- a/reference/tlo.methods.hiv.html +++ b/reference/tlo.methods.hiv.html @@ -6,7 +6,7 @@ - tlo.methods.hiv module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.hiv module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -512,10 +512,10 @@

    Class attributes:

    ADDITIONAL_DEPENDENCIES : {‘Tb’, ‘NewbornOutcomes’}

    -

    CAUSES_OF_DEATH : {‘AIDS_non_TB’: <tlo.methods.causes.Cause object at 0x14f519b50>, ‘AIDS_TB’: <tlo.methods.causes.Cause object at 0x14f51b2d0>}

    -

    CAUSES_OF_DISABILITY : {‘HIV’: <tlo.methods.causes.Cause object at 0x14f51a750>}

    -

    INIT_DEPENDENCIES : {‘Lifestyle’, ‘HealthSystem’, ‘Demography’, ‘SymptomManager’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘AIDS_non_TB’: <tlo.methods.causes.Cause object at 0x15e5af650>, ‘AIDS_TB’: <tlo.methods.causes.Cause object at 0x15e5ad6d0>}

    +

    CAUSES_OF_DISABILITY : {‘HIV’: <tlo.methods.causes.Cause object at 0x15e5af8d0>}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘Lifestyle’, ‘HealthSystem’, ‘SymptomManager’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’}

    __annotations__ : {}

    Functions (defined or overridden in class Hiv):

    @@ -1511,7 +1511,7 @@

    Bases: tlo.methods.hsi_event.HSI_Event, tlo.events.IndividualScopeEventMixin

    Class attributes:

    -

    EXPECTED_APPT_FOOTPRINT : <property object at 0x14f55f380>

    +

    EXPECTED_APPT_FOOTPRINT : <property object at 0x15e5d2ac0>

    __annotations__ : {}

    Functions (defined or overridden in class HSI_Hiv_StartOrContinueTreatment):

    diff --git a/reference/tlo.methods.hiv_tb_calibration.html b/reference/tlo.methods.hiv_tb_calibration.html index dfc7550a74..381d4745b9 100644 --- a/reference/tlo.methods.hiv_tb_calibration.html +++ b/reference/tlo.methods.hiv_tb_calibration.html @@ -6,7 +6,7 @@ - tlo.methods.hiv_tb_calibration module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.hiv_tb_calibration module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -107,7 +107,7 @@

    Bases: tlo.core.Module

    Class attributes:

    -

    INIT_DEPENDENCIES : {‘Tb’, ‘Demography’, ‘Hiv’}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘Tb’, ‘Hiv’}

    METADATA : {}

    __annotations__ : {}

    Functions (defined or overridden in class Deviance):

    diff --git a/reference/tlo.methods.hsi_event.html b/reference/tlo.methods.hsi_event.html index f1a6100e59..a7717b93c1 100644 --- a/reference/tlo.methods.hsi_event.html +++ b/reference/tlo.methods.hsi_event.html @@ -6,7 +6,7 @@ - tlo.methods.hsi_event module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.hsi_event module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -109,12 +109,12 @@

    Class attributes:

    __annotations__ : {‘module’: ‘Module’, ‘target’: ‘int’, ‘TREATMENT_ID’: ‘str’, ‘ACCEPTED_FACILITY_LEVEL’: ‘str’, ‘BEDDAYS_FOOTPRINT’: ‘Dict[str, Union[float, int]]’, ‘_received_info_about_bed_days’: ‘Dict[str, Union[float, int]]’, ‘expected_time_requests’: ‘Counter’, ‘facility_info’: ‘FacilityInfo’}

    _received_info_about_bed_days : None

    -

    bed_days_allocated_to_this_event : <property object at 0x14f203f60>

    +

    bed_days_allocated_to_this_event : <property object at 0x15dfd02c0>

    expected_time_requests : {}

    facility_info : None

    -

    healthcare_system : <property object at 0x14f220040>

    -

    is_all_declared_equipment_available : <property object at 0x14f220090>

    -

    sim : <property object at 0x14f203fb0>

    +

    healthcare_system : <property object at 0x15dfd0360>

    +

    is_all_declared_equipment_available : <property object at 0x15dfd03b0>

    +

    sim : <property object at 0x15dfd0310>

    Functions (defined or overridden in class HSI_Event):

    diff --git a/reference/tlo.methods.hsi_generic_first_appts.html b/reference/tlo.methods.hsi_generic_first_appts.html index 9bd257e90c..a14229bc16 100644 --- a/reference/tlo.methods.hsi_generic_first_appts.html +++ b/reference/tlo.methods.hsi_generic_first_appts.html @@ -6,7 +6,7 @@ - tlo.methods.hsi_generic_first_appts module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.hsi_generic_first_appts module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.html b/reference/tlo.methods.html index 37bf00d03a..c7f0f2c4d7 100644 --- a/reference/tlo.methods.html +++ b/reference/tlo.methods.html @@ -6,7 +6,7 @@ - tlo.methods package — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods package — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.labour.html b/reference/tlo.methods.labour.html index 343301fc1f..8aa9d92d36 100644 --- a/reference/tlo.methods.labour.html +++ b/reference/tlo.methods.labour.html @@ -6,7 +6,7 @@ - tlo.methods.labour module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.labour module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -962,11 +962,11 @@

    Class attributes:

    -

    ADDITIONAL_DEPENDENCIES : {‘HealthSystem’, ‘Contraception’, ‘PregnancySupervisor’, ‘Lifestyle’, ‘NewbornOutcomes’, ‘CareOfWomenDuringPregnancy’, ‘PostnatalSupervisor’}

    -

    CAUSES_OF_DEATH : {‘uterine_rupture’: <tlo.methods.causes.Cause object at 0x33f752d50>, ‘intrapartum_sepsis’: <tlo.methods.causes.Cause object at 0x33f7535d0>, ‘antepartum_haemorrhage’: <tlo.methods.causes.Cause object at 0x33f750850>, ‘postpartum_sepsis’: <tlo.methods.causes.Cause object at 0x33f7509d0>, ‘postpartum_haemorrhage’: <tlo.methods.causes.Cause object at 0x33f753b10>, ‘secondary_postpartum_haemorrhage’: <tlo.methods.causes.Cause object at 0x33f752850>, ‘severe_pre_eclampsia’: <tlo.methods.causes.Cause object at 0x33f752090>, ‘eclampsia’: <tlo.methods.causes.Cause object at 0x33f752410>}

    -

    CAUSES_OF_DISABILITY : {‘maternal’: <tlo.methods.causes.Cause object at 0x33f7525d0>}

    +

    ADDITIONAL_DEPENDENCIES : {‘HealthSystem’, ‘Lifestyle’, ‘Contraception’, ‘PregnancySupervisor’, ‘PostnatalSupervisor’, ‘CareOfWomenDuringPregnancy’, ‘NewbornOutcomes’}

    +

    CAUSES_OF_DEATH : {‘uterine_rupture’: <tlo.methods.causes.Cause object at 0x16a947990>, ‘intrapartum_sepsis’: <tlo.methods.causes.Cause object at 0x16a946a50>, ‘antepartum_haemorrhage’: <tlo.methods.causes.Cause object at 0x16a9449d0>, ‘postpartum_sepsis’: <tlo.methods.causes.Cause object at 0x16a947cd0>, ‘postpartum_haemorrhage’: <tlo.methods.causes.Cause object at 0x16a947090>, ‘secondary_postpartum_haemorrhage’: <tlo.methods.causes.Cause object at 0x16a9478d0>, ‘severe_pre_eclampsia’: <tlo.methods.causes.Cause object at 0x16a947ad0>, ‘eclampsia’: <tlo.methods.causes.Cause object at 0x16a9445d0>}

    +

    CAUSES_OF_DISABILITY : {‘maternal’: <tlo.methods.causes.Cause object at 0x16a947c50>}

    INIT_DEPENDENCIES : {‘Demography’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘Stunting’}

    __annotations__ : {}

    Functions (defined or overridden in class Labour):

    diff --git a/reference/tlo.methods.labour_lm.html b/reference/tlo.methods.labour_lm.html index a0b2eb82b3..d16e1673c6 100644 --- a/reference/tlo.methods.labour_lm.html +++ b/reference/tlo.methods.labour_lm.html @@ -6,7 +6,7 @@ - tlo.methods.labour_lm module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.labour_lm module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.malaria.html b/reference/tlo.methods.malaria.html index f9f69eb797..fa12a946bb 100644 --- a/reference/tlo.methods.malaria.html +++ b/reference/tlo.methods.malaria.html @@ -6,7 +6,7 @@ - tlo.methods.malaria module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.malaria module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -119,22 +119,6 @@ -

    interv

    -

    REAL

    -

    data frame of intervention coverage by year

    - -

    clin_inc

    -

    REAL

    -

    data frame of clinical incidence by age, district, intervention coverage

    - -

    inf_inc

    -

    REAL

    -

    data frame of infection incidence by age, district, intervention coverage

    - -

    sev_inc

    -

    REAL

    -

    data frame of severe case incidence by age, district, intervention coverage

    -

    itn_district

    REAL

    data frame of ITN usage rates by district

    @@ -346,10 +330,10 @@

    Class attributes:

    -

    CAUSES_OF_DEATH : {‘Malaria’: <tlo.methods.causes.Cause object at 0x33f3d2490>}

    -

    CAUSES_OF_DISABILITY : {‘Malaria’: <tlo.methods.causes.Cause object at 0x33f3d2510>}

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’, ‘Contraception’, ‘SymptomManager’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘Malaria’: <tlo.methods.causes.Cause object at 0x16a86dcd0>}

    +

    CAUSES_OF_DISABILITY : {‘Malaria’: <tlo.methods.causes.Cause object at 0x16a86c790>}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘Contraception’, ‘HealthSystem’, ‘SymptomManager’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’, ‘Hiv’}

    __annotations__ : {}

    Functions (defined or overridden in class Malaria):

    diff --git a/reference/tlo.methods.measles.html b/reference/tlo.methods.measles.html index 06f4faf1c9..3ace270658 100644 --- a/reference/tlo.methods.measles.html +++ b/reference/tlo.methods.measles.html @@ -6,7 +6,7 @@ - tlo.methods.measles module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.measles module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -187,10 +187,10 @@

    Class attributes:

    -

    CAUSES_OF_DEATH : {‘Measles’: <tlo.methods.causes.Cause object at 0x33f34a4d0>}

    -

    CAUSES_OF_DISABILITY : {‘Measles’: <tlo.methods.causes.Cause object at 0x33f349350>}

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’, ‘SymptomManager’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘Measles’: <tlo.methods.causes.Cause object at 0x16a9453d0>}

    +

    CAUSES_OF_DISABILITY : {‘Measles’: <tlo.methods.causes.Cause object at 0x16a9440d0>}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘HealthSystem’, ‘SymptomManager’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’}

    __annotations__ : {}

    Functions (defined or overridden in class Measles):

    diff --git a/reference/tlo.methods.mockitis.html b/reference/tlo.methods.mockitis.html index f5cca438c8..b30f5d81b0 100644 --- a/reference/tlo.methods.mockitis.html +++ b/reference/tlo.methods.mockitis.html @@ -6,7 +6,7 @@ - tlo.methods.mockitis module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.mockitis module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -186,10 +186,10 @@

    Class attributes:

    -

    CAUSES_OF_DEATH : {‘Mockitis’: <tlo.methods.causes.Cause object at 0x14f764c10>}

    -

    CAUSES_OF_DISABILITY : {‘Mockitis’: <tlo.methods.causes.Cause object at 0x14f765fd0>}

    +

    CAUSES_OF_DEATH : {‘Mockitis’: <tlo.methods.causes.Cause object at 0x15e279110>}

    +

    CAUSES_OF_DISABILITY : {‘Mockitis’: <tlo.methods.causes.Cause object at 0x15e27b050>}

    INIT_DEPENDENCIES : {‘Demography’, ‘SymptomManager’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’}

    __annotations__ : {}

    Functions (defined or overridden in class Mockitis):

    diff --git a/reference/tlo.methods.newborn_outcomes.html b/reference/tlo.methods.newborn_outcomes.html index 144454a894..a344f6771d 100644 --- a/reference/tlo.methods.newborn_outcomes.html +++ b/reference/tlo.methods.newborn_outcomes.html @@ -6,7 +6,7 @@ - tlo.methods.newborn_outcomes module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.newborn_outcomes module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -492,11 +492,11 @@

    Class attributes:

    -

    ADDITIONAL_DEPENDENCIES : {‘CareOfWomenDuringPregnancy’, ‘PostnatalSupervisor’, ‘PregnancySupervisor’, ‘Labour’}

    -

    CAUSES_OF_DEATH : {‘early_onset_sepsis’: <tlo.methods.causes.Cause object at 0x33f8411d0>, ‘late_onset_sepsis’: <tlo.methods.causes.Cause object at 0x33f8401d0>, ‘encephalopathy’: <tlo.methods.causes.Cause object at 0x33f843c50>, ‘neonatal_respiratory_depression’: <tlo.methods.causes.Cause object at 0x33f840c50>, ‘preterm_other’: <tlo.methods.causes.Cause object at 0x33f841010>, ‘respiratory_distress_syndrome’: <tlo.methods.causes.Cause object at 0x33f843050>, ‘congenital_heart_anomaly’: <tlo.methods.causes.Cause object at 0x33f842890>, ‘limb_or_musculoskeletal_anomaly’: <tlo.methods.causes.Cause object at 0x33f840d10>, ‘urogenital_anomaly’: <tlo.methods.causes.Cause object at 0x33f842ad0>, ‘digestive_anomaly’: <tlo.methods.causes.Cause object at 0x33f842f50>, ‘other_anomaly’: <tlo.methods.causes.Cause object at 0x33f840250>}

    -

    CAUSES_OF_DISABILITY : {‘Retinopathy of Prematurity’: <tlo.methods.causes.Cause object at 0x33f8420d0>, ‘Neonatal Encephalopathy’: <tlo.methods.causes.Cause object at 0x33f842690>, ‘Neonatal Sepsis Long term Disability’: <tlo.methods.causes.Cause object at 0x33f843850>, ‘Preterm Birth Disability’: <tlo.methods.causes.Cause object at 0x33f8403d0>}

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    ADDITIONAL_DEPENDENCIES : {‘Labour’, ‘CareOfWomenDuringPregnancy’, ‘PregnancySupervisor’, ‘PostnatalSupervisor’}

    +

    CAUSES_OF_DEATH : {‘early_onset_sepsis’: <tlo.methods.causes.Cause object at 0x16aa3f510>, ‘late_onset_sepsis’: <tlo.methods.causes.Cause object at 0x16aa3de50>, ‘encephalopathy’: <tlo.methods.causes.Cause object at 0x16aa3f550>, ‘neonatal_respiratory_depression’: <tlo.methods.causes.Cause object at 0x16aa3e750>, ‘preterm_other’: <tlo.methods.causes.Cause object at 0x16aa3cad0>, ‘respiratory_distress_syndrome’: <tlo.methods.causes.Cause object at 0x16aa3cd90>, ‘congenital_heart_anomaly’: <tlo.methods.causes.Cause object at 0x16aa3f710>, ‘limb_or_musculoskeletal_anomaly’: <tlo.methods.causes.Cause object at 0x16aa3cc50>, ‘urogenital_anomaly’: <tlo.methods.causes.Cause object at 0x16aa3ce50>, ‘digestive_anomaly’: <tlo.methods.causes.Cause object at 0x16aa3d4d0>, ‘other_anomaly’: <tlo.methods.causes.Cause object at 0x16aa3e050>}

    +

    CAUSES_OF_DISABILITY : {‘Retinopathy of Prematurity’: <tlo.methods.causes.Cause object at 0x16aa3e5d0>, ‘Neonatal Encephalopathy’: <tlo.methods.causes.Cause object at 0x16aa3f610>, ‘Neonatal Sepsis Long term Disability’: <tlo.methods.causes.Cause object at 0x16aa3d250>, ‘Preterm Birth Disability’: <tlo.methods.causes.Cause object at 0x16aa3f6d0>}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘HealthSystem’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’}

    __annotations__ : {}

    Functions (defined or overridden in class NewbornOutcomes):

    diff --git a/reference/tlo.methods.newborn_outcomes_lm.html b/reference/tlo.methods.newborn_outcomes_lm.html index 0b272238f0..eaea5f7462 100644 --- a/reference/tlo.methods.newborn_outcomes_lm.html +++ b/reference/tlo.methods.newborn_outcomes_lm.html @@ -6,7 +6,7 @@ - tlo.methods.newborn_outcomes_lm module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.newborn_outcomes_lm module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.oesophagealcancer.html b/reference/tlo.methods.oesophagealcancer.html index c751753399..6104f0d1d3 100644 --- a/reference/tlo.methods.oesophagealcancer.html +++ b/reference/tlo.methods.oesophagealcancer.html @@ -6,7 +6,7 @@ - tlo.methods.oesophagealcancer module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.oesophagealcancer module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -292,10 +292,10 @@

    Class attributes:

    -

    CAUSES_OF_DEATH : {‘OesophagealCancer’: <tlo.methods.causes.Cause object at 0x33fcb8490>}

    -

    CAUSES_OF_DISABILITY : {‘OesophagealCancer’: <tlo.methods.causes.Cause object at 0x33fcb9790>}

    -

    INIT_DEPENDENCIES : {‘Lifestyle’, ‘HealthSystem’, ‘Demography’, ‘SymptomManager’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘OesophagealCancer’: <tlo.methods.causes.Cause object at 0x16afe5990>}

    +

    CAUSES_OF_DISABILITY : {‘OesophagealCancer’: <tlo.methods.causes.Cause object at 0x16ad03750>}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘Lifestyle’, ‘HealthSystem’, ‘SymptomManager’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’}

    __annotations__ : {}

    Functions (defined or overridden in class OesophagealCancer):

    diff --git a/reference/tlo.methods.other_adult_cancers.html b/reference/tlo.methods.other_adult_cancers.html index 620a3b8ba7..c64b1fb43d 100644 --- a/reference/tlo.methods.other_adult_cancers.html +++ b/reference/tlo.methods.other_adult_cancers.html @@ -6,7 +6,7 @@ - tlo.methods.other_adult_cancers module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.other_adult_cancers module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -258,10 +258,10 @@

    Class attributes:

    -

    CAUSES_OF_DEATH : {‘OtherAdultCancer’: <tlo.methods.causes.Cause object at 0x33f7aac50>}

    -

    CAUSES_OF_DISABILITY : {‘OtherAdultCancer’: <tlo.methods.causes.Cause object at 0x33f7a9990>}

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’, ‘SymptomManager’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘OtherAdultCancer’: <tlo.methods.causes.Cause object at 0x16afe5790>}

    +

    CAUSES_OF_DISABILITY : {‘OtherAdultCancer’: <tlo.methods.causes.Cause object at 0x16afe5750>}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘HealthSystem’, ‘SymptomManager’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’, ‘Hiv’}

    __annotations__ : {}

    gbd_causes_of_cancer_represented_in_this_module : [‘Other malignant neoplasms’, ‘Nasopharynx cancer’, ‘Other pharynx cancer’, ‘Gallbladder and biliary tract cancer’, ‘Pancreatic cancer’, ‘Malignant skin melanoma’, ‘Non-melanoma skin cancer’, ‘Ovarian cancer’, ‘Testicular cancer’, ‘Kidney cancer’, ‘Thyroid cancer’, ‘Mesothelioma’, ‘Hodgkin lymphoma’, ‘Non-Hodgkin lymphoma’, ‘Multiple myeloma’, ‘Leukemia’, ‘Other neoplasms’, ‘Cervical cancer’, ‘Uterine cancer’, ‘Colon and rectum cancer’, ‘Lip and oral cavity cancer’, ‘Stomach cancer’, ‘Liver cancer’]

    diff --git a/reference/tlo.methods.postnatal_supervisor.html b/reference/tlo.methods.postnatal_supervisor.html index 4c351e0a20..04dd739fce 100644 --- a/reference/tlo.methods.postnatal_supervisor.html +++ b/reference/tlo.methods.postnatal_supervisor.html @@ -6,7 +6,7 @@ - tlo.methods.postnatal_supervisor module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.postnatal_supervisor module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -397,11 +397,11 @@

    Class attributes:

    -

    ADDITIONAL_DEPENDENCIES : {‘Lifestyle’, ‘NewbornOutcomes’, ‘PregnancySupervisor’, ‘Labour’}

    -

    CAUSES_OF_DEATH : {‘secondary_postpartum_haemorrhage’: <tlo.methods.causes.Cause object at 0x33f299c50>, ‘postpartum_sepsis’: <tlo.methods.causes.Cause object at 0x33f29b0d0>, ‘severe_pre_eclampsia’: <tlo.methods.causes.Cause object at 0x33f29b9d0>, ‘eclampsia’: <tlo.methods.causes.Cause object at 0x33f29b810>, ‘severe_gestational_hypertension’: <tlo.methods.causes.Cause object at 0x33f2999d0>, ‘early_onset_sepsis’: <tlo.methods.causes.Cause object at 0x33f29bd10>, ‘late_onset_sepsis’: <tlo.methods.causes.Cause object at 0x33f299f10>}

    -

    CAUSES_OF_DISABILITY : {‘maternal’: <tlo.methods.causes.Cause object at 0x33f298b90>}

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    ADDITIONAL_DEPENDENCIES : {‘Labour’, ‘Lifestyle’, ‘PregnancySupervisor’, ‘NewbornOutcomes’}

    +

    CAUSES_OF_DEATH : {‘secondary_postpartum_haemorrhage’: <tlo.methods.causes.Cause object at 0x16862d990>, ‘postpartum_sepsis’: <tlo.methods.causes.Cause object at 0x16a8f37d0>, ‘severe_pre_eclampsia’: <tlo.methods.causes.Cause object at 0x16a8f2750>, ‘eclampsia’: <tlo.methods.causes.Cause object at 0x16a8f2a10>, ‘severe_gestational_hypertension’: <tlo.methods.causes.Cause object at 0x16a8f1750>, ‘early_onset_sepsis’: <tlo.methods.causes.Cause object at 0x16a8f0950>, ‘late_onset_sepsis’: <tlo.methods.causes.Cause object at 0x16a8f2cd0>}

    +

    CAUSES_OF_DISABILITY : {‘maternal’: <tlo.methods.causes.Cause object at 0x16a8f05d0>}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘HealthSystem’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    __annotations__ : {}

    Functions (defined or overridden in class PostnatalSupervisor):

    diff --git a/reference/tlo.methods.postnatal_supervisor_lm.html b/reference/tlo.methods.postnatal_supervisor_lm.html index 89489c4580..4f167db5da 100644 --- a/reference/tlo.methods.postnatal_supervisor_lm.html +++ b/reference/tlo.methods.postnatal_supervisor_lm.html @@ -6,7 +6,7 @@ - tlo.methods.postnatal_supervisor_lm module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.postnatal_supervisor_lm module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.pregnancy_helper_functions.html b/reference/tlo.methods.pregnancy_helper_functions.html index 8964114896..aa013b8662 100644 --- a/reference/tlo.methods.pregnancy_helper_functions.html +++ b/reference/tlo.methods.pregnancy_helper_functions.html @@ -6,7 +6,7 @@ - tlo.methods.pregnancy_helper_functions module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.pregnancy_helper_functions module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.pregnancy_supervisor.html b/reference/tlo.methods.pregnancy_supervisor.html index a042933511..9e56f52226 100644 --- a/reference/tlo.methods.pregnancy_supervisor.html +++ b/reference/tlo.methods.pregnancy_supervisor.html @@ -6,7 +6,7 @@ - tlo.methods.pregnancy_supervisor module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.pregnancy_supervisor module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -677,12 +677,12 @@

    Class attributes:

    -

    ADDITIONAL_DEPENDENCIES : {‘HealthSystem’, ‘Contraception’, ‘Labour’, ‘Lifestyle’, ‘CareOfWomenDuringPregnancy’}

    -

    CAUSES_OF_DEATH : {‘ectopic_pregnancy’: <tlo.methods.causes.Cause object at 0x33f6d8450>, ‘spontaneous_abortion’: <tlo.methods.causes.Cause object at 0x33f6818d0>, ‘induced_abortion’: <tlo.methods.causes.Cause object at 0x33f680290>, ‘antepartum_haemorrhage’: <tlo.methods.causes.Cause object at 0x33f681e50>, ‘severe_gestational_hypertension’: <tlo.methods.causes.Cause object at 0x33f680a90>, ‘severe_pre_eclampsia’: <tlo.methods.causes.Cause object at 0x33f681350>, ‘eclampsia’: <tlo.methods.causes.Cause object at 0x33f681290>, ‘antenatal_sepsis’: <tlo.methods.causes.Cause object at 0x33f6811d0>}

    -

    CAUSES_OF_DISABILITY : {‘maternal’: <tlo.methods.causes.Cause object at 0x33f681cd0>}

    +

    ADDITIONAL_DEPENDENCIES : {‘HealthSystem’, ‘Lifestyle’, ‘Labour’, ‘Contraception’, ‘CareOfWomenDuringPregnancy’}

    +

    CAUSES_OF_DEATH : {‘ectopic_pregnancy’: <tlo.methods.causes.Cause object at 0x16a957c50>, ‘spontaneous_abortion’: <tlo.methods.causes.Cause object at 0x16ab58f10>, ‘induced_abortion’: <tlo.methods.causes.Cause object at 0x16ab5afd0>, ‘antepartum_haemorrhage’: <tlo.methods.causes.Cause object at 0x16ab5a310>, ‘severe_gestational_hypertension’: <tlo.methods.causes.Cause object at 0x16ab58d90>, ‘severe_pre_eclampsia’: <tlo.methods.causes.Cause object at 0x16ab5add0>, ‘eclampsia’: <tlo.methods.causes.Cause object at 0x16ab5aad0>, ‘antenatal_sepsis’: <tlo.methods.causes.Cause object at 0x16ab5ab50>}

    +

    CAUSES_OF_DISABILITY : {‘maternal’: <tlo.methods.causes.Cause object at 0x16ab5b050>}

    INIT_DEPENDENCIES : {‘Demography’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>}

    -

    OPTIONAL_INIT_DEPENDENCIES : {‘Malaria’, ‘HealthBurden’, ‘CardioMetabolicDisorders’, ‘Hiv’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_HEALTHBURDEN: 4>}

    +

    OPTIONAL_INIT_DEPENDENCIES : {‘CardioMetabolicDisorders’, ‘HealthBurden’, ‘Malaria’, ‘Hiv’}

    __annotations__ : {}

    Functions (defined or overridden in class PregnancySupervisor):

    diff --git a/reference/tlo.methods.pregnancy_supervisor_lm.html b/reference/tlo.methods.pregnancy_supervisor_lm.html index c47f51e98c..2c00f886ff 100644 --- a/reference/tlo.methods.pregnancy_supervisor_lm.html +++ b/reference/tlo.methods.pregnancy_supervisor_lm.html @@ -6,7 +6,7 @@ - tlo.methods.pregnancy_supervisor_lm module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.pregnancy_supervisor_lm module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.prostate_cancer.html b/reference/tlo.methods.prostate_cancer.html index 234d242d3b..1290c28022 100644 --- a/reference/tlo.methods.prostate_cancer.html +++ b/reference/tlo.methods.prostate_cancer.html @@ -6,7 +6,7 @@ - tlo.methods.prostate_cancer module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.prostate_cancer module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -266,10 +266,10 @@

    Class attributes:

    -

    CAUSES_OF_DEATH : {‘ProstateCancer’: <tlo.methods.causes.Cause object at 0x33f3ad0d0>}

    -

    CAUSES_OF_DISABILITY : {‘ProstateCancer’: <tlo.methods.causes.Cause object at 0x33f3ae590>}

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’, ‘SymptomManager’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘ProstateCancer’: <tlo.methods.causes.Cause object at 0x16abe49d0>}

    +

    CAUSES_OF_DISABILITY : {‘ProstateCancer’: <tlo.methods.causes.Cause object at 0x16abe4190>}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘HealthSystem’, ‘SymptomManager’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’}

    __annotations__ : {}

    Functions (defined or overridden in class ProstateCancer):

    diff --git a/reference/tlo.methods.rti.html b/reference/tlo.methods.rti.html index 2ba9ed8910..ce00cc4379 100644 --- a/reference/tlo.methods.rti.html +++ b/reference/tlo.methods.rti.html @@ -6,7 +6,7 @@ - tlo.methods.rti module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.rti module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -1168,9 +1168,9 @@

    Class attributes:

    -

    ADDITIONAL_DEPENDENCIES : {‘Lifestyle’, ‘HealthSystem’, ‘Demography’}

    -

    CAUSES_OF_DEATH : {‘RTI_death_without_med’: <tlo.methods.causes.Cause object at 0x33f710390>, ‘RTI_death_with_med’: <tlo.methods.causes.Cause object at 0x33f711f10>, ‘RTI_unavailable_med’: <tlo.methods.causes.Cause object at 0x33f712510>, ‘RTI_imm_death’: <tlo.methods.causes.Cause object at 0x33f711e90>, ‘RTI_death_shock’: <tlo.methods.causes.Cause object at 0x33f713bd0>}

    -

    CAUSES_OF_DISABILITY : {‘RTI’: <tlo.methods.causes.Cause object at 0x33f713b90>}

    +

    ADDITIONAL_DEPENDENCIES : {‘Demography’, ‘Lifestyle’, ‘HealthSystem’}

    +

    CAUSES_OF_DEATH : {‘RTI_death_without_med’: <tlo.methods.causes.Cause object at 0x16ae40750>, ‘RTI_death_with_med’: <tlo.methods.causes.Cause object at 0x16ae41c10>, ‘RTI_unavailable_med’: <tlo.methods.causes.Cause object at 0x16ae42b10>, ‘RTI_imm_death’: <tlo.methods.causes.Cause object at 0x16ae402d0>, ‘RTI_death_shock’: <tlo.methods.causes.Cause object at 0x16ae43290>}

    +

    CAUSES_OF_DISABILITY : {‘RTI’: <tlo.methods.causes.Cause object at 0x16ae40590>}

    DATE_TO_REMOVE_DALY_COLUMNS : [‘rt_date_to_remove_daly_1’, ‘rt_date_to_remove_daly_2’, ‘rt_date_to_remove_daly_3’, ‘rt_date_to_remove_daly_4’, ‘rt_date_to_remove_daly_5’, ‘rt_date_to_remove_daly_6’, ‘rt_date_to_remove_daly_7’, ‘rt_date_to_remove_daly_8’]

    FRACTURE_CODES : [‘112’, ‘113’, ‘211’, ‘212’, ‘412’, ‘414’, ‘612’, ‘712’, ‘811’, ‘812’, ‘813’]

    INIT_DEPENDENCIES : {‘HealthBurden’, ‘SymptomManager’}

    @@ -1179,7 +1179,7 @@

    INJURY_COLUMNS : [‘rt_injury_1’, ‘rt_injury_2’, ‘rt_injury_3’, ‘rt_injury_4’, ‘rt_injury_5’, ‘rt_injury_6’, ‘rt_injury_7’, ‘rt_injury_8’]

    INJURY_DATE_COLUMN_MAP : {‘rt_injury_1’: ‘rt_date_to_remove_daly_1’, ‘rt_injury_2’: ‘rt_date_to_remove_daly_2’, ‘rt_injury_3’: ‘rt_date_to_remove_daly_3’, ‘rt_injury_4’: ‘rt_date_to_remove_daly_4’, ‘rt_injury_5’: ‘rt_date_to_remove_daly_5’, ‘rt_injury_6’: ‘rt_date_to_remove_daly_6’, ‘rt_injury_7’: ‘rt_date_to_remove_daly_7’, ‘rt_injury_8’: ‘rt_date_to_remove_daly_8’, ‘rt_date_to_remove_daly_1’: ‘rt_injury_1’, ‘rt_date_to_remove_daly_2’: ‘rt_injury_2’, ‘rt_date_to_remove_daly_3’: ‘rt_injury_3’, ‘rt_date_to_remove_daly_4’: ‘rt_injury_4’, ‘rt_date_to_remove_daly_5’: ‘rt_injury_5’, ‘rt_date_to_remove_daly_6’: ‘rt_injury_6’, ‘rt_date_to_remove_daly_7’: ‘rt_injury_7’, ‘rt_date_to_remove_daly_8’: ‘rt_injury_8’}

    INJURY_INDICES : range(1, 9)

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    NO_TREATMENT_RECOVERY_TIMES_IN_DAYS : {‘112’: 49, ‘113’: 49, ‘1101’: 7, ‘211’: 49, ‘212’: 49, ‘241’: 7, ‘2101’: 7, ‘291’: 7, ‘342’: 42, ‘343’: 42, ‘361’: 7, ‘363’: 14, ‘322’: 42, ‘323’: 42, ‘3101’: 7, ‘3113’: 56, ‘412’: 35, ‘414’: 365, ‘461’: 7, ‘463’: 14, ‘453a’: 84, ‘453b’: 84, ‘441’: 14, ‘442’: 14, ‘4101’: 7, ‘552’: 90, ‘553’: 90, ‘554’: 90, ‘5101’: 7, ‘5113’: 56, ‘612’: 63, ‘712a’: 70, ‘712b’: 70, ‘722’: 84, ‘7101’: 7, ‘7113’: 56, ‘813do’: 240, ‘811’: 70, ‘812’: 70, ‘813eo’: 240, ‘813bo’: 240, ‘813co’: 240, ‘822a’: 60, ‘822b’: 180, ‘8101’: 7, ‘8113’: 56}

    SWAPPING_CODES : [‘712b’, ‘812’, ‘3113’, ‘4113’, ‘5113’, ‘7113’, ‘8113’, ‘813a’, ‘813b’, ‘P673a’, ‘P673b’, ‘P674a’, ‘P674b’, ‘P675a’, ‘P675b’, ‘P676’, ‘P782b’, ‘P783’, ‘P883’, ‘P884’, ‘813bo’, ‘813co’, ‘813do’, ‘813eo’]

    __annotations__ : {}

    diff --git a/reference/tlo.methods.scenario_switcher.html b/reference/tlo.methods.scenario_switcher.html index d400cd13bc..107ea9232b 100644 --- a/reference/tlo.methods.scenario_switcher.html +++ b/reference/tlo.methods.scenario_switcher.html @@ -6,7 +6,7 @@ - tlo.methods.scenario_switcher module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.scenario_switcher module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.schisto.html b/reference/tlo.methods.schisto.html index 2258e91e60..cdd1e532d1 100644 --- a/reference/tlo.methods.schisto.html +++ b/reference/tlo.methods.schisto.html @@ -6,7 +6,7 @@ - tlo.methods.schisto module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.schisto module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -178,9 +178,9 @@

    Class attributes:

    CAUSES_OF_DEATH : {}

    -

    CAUSES_OF_DISABILITY : {‘Schistosomiasis’: <tlo.methods.causes.Cause object at 0x14f51b3d0>}

    +

    CAUSES_OF_DISABILITY : {‘Schistosomiasis’: <tlo.methods.causes.Cause object at 0x15e5054d0>}

    INIT_DEPENDENCIES : {‘Demography’, ‘SymptomManager’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthSystem’, ‘HealthBurden’}

    __annotations__ : {}

    module_prefix : ss

    diff --git a/reference/tlo.methods.simplified_births.html b/reference/tlo.methods.simplified_births.html index b4d1fab5f7..95c52e1bcc 100644 --- a/reference/tlo.methods.simplified_births.html +++ b/reference/tlo.methods.simplified_births.html @@ -6,7 +6,7 @@ - tlo.methods.simplified_births module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.simplified_births module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -187,7 +187,7 @@

    Class attributes:

    -

    ALTERNATIVE_TO : {‘PregnancySupervisor’, ‘Contraception’, ‘Labour’, ‘NewbornOutcomes’, ‘PostnatalSupervisor’}

    +

    ALTERNATIVE_TO : {‘Labour’, ‘Contraception’, ‘PregnancySupervisor’, ‘PostnatalSupervisor’, ‘NewbornOutcomes’}

    INIT_DEPENDENCIES : {‘Demography’}

    METADATA : {}

    __annotations__ : {}

    diff --git a/reference/tlo.methods.skeleton.html b/reference/tlo.methods.skeleton.html index 41a85c14ac..d2e300d985 100644 --- a/reference/tlo.methods.skeleton.html +++ b/reference/tlo.methods.skeleton.html @@ -6,7 +6,7 @@ - tlo.methods.skeleton module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.skeleton module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -159,10 +159,10 @@

    Class attributes:

    ADDITIONAL_DEPENDENCIES : {‘HealthSystem’}

    -

    CAUSES_OF_DEATH : {‘tlo_name_of_a_cause_of_death_in_this_module’: <tlo.methods.causes.Cause object at 0x33f056a10>}

    -

    CAUSES_OF_DISABILITY : {‘tlo_name_of_a_cause_of_disability_in_this_module’: <tlo.methods.causes.Cause object at 0x33f331810>}

    +

    CAUSES_OF_DEATH : {‘tlo_name_of_a_cause_of_death_in_this_module’: <tlo.methods.causes.Cause object at 0x16a921dd0>}

    +

    CAUSES_OF_DISABILITY : {‘tlo_name_of_a_cause_of_disability_in_this_module’: <tlo.methods.causes.Cause object at 0x16a923550>}

    INIT_DEPENDENCIES : {‘Demography’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’}

    SYMPTOMS : {}

    __annotations__ : {}

    diff --git a/reference/tlo.methods.stunting.html b/reference/tlo.methods.stunting.html index 783d8296d1..ce3a48f66f 100644 --- a/reference/tlo.methods.stunting.html +++ b/reference/tlo.methods.stunting.html @@ -6,7 +6,7 @@ - tlo.methods.stunting module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.stunting module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -271,7 +271,7 @@

    Overview

    Class attributes:

    -

    INIT_DEPENDENCIES : {‘Diarrhoea’, ‘Demography’, ‘Hiv’, ‘NewbornOutcomes’, ‘Wasting’}

    +

    INIT_DEPENDENCIES : {‘Demography’, ‘Hiv’, ‘Wasting’, ‘Diarrhoea’, ‘NewbornOutcomes’}

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_HEALTHSYSTEM: 3>}

    __annotations__ : {}

    Functions (defined or overridden in class Stunting):

    @@ -602,7 +602,7 @@

    Overview

    Class attributes:

    -

    ALTERNATIVE_TO : {‘Diarrhoea’, ‘Wasting’, ‘Hiv’}

    +

    ALTERNATIVE_TO : {‘Wasting’, ‘Hiv’, ‘Diarrhoea’}

    INIT_DEPENDENCIES : {‘Demography’}

    __annotations__ : {}

    Functions (defined or overridden in class StuntingPropertiesOfOtherModules):

    diff --git a/reference/tlo.methods.symptommanager.html b/reference/tlo.methods.symptommanager.html index 8949db0a21..9610642d0b 100644 --- a/reference/tlo.methods.symptommanager.html +++ b/reference/tlo.methods.symptommanager.html @@ -6,7 +6,7 @@ - tlo.methods.symptommanager module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.symptommanager module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.methods.tb.html b/reference/tlo.methods.tb.html index 0d5840cd5c..5643c10281 100644 --- a/reference/tlo.methods.tb.html +++ b/reference/tlo.methods.tb.html @@ -6,7 +6,7 @@ - tlo.methods.tb module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.tb module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -490,10 +490,10 @@

    Class attributes:

    -

    CAUSES_OF_DEATH : {‘TB’: <tlo.methods.causes.Cause object at 0x14f353610>, ‘AIDS_TB’: <tlo.methods.causes.Cause object at 0x14f353710>}

    -

    CAUSES_OF_DISABILITY : {‘TB’: <tlo.methods.causes.Cause object at 0x14f350210>}

    -

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Demography’, ‘SymptomManager’, ‘Lifestyle’, ‘Epi’}

    -

    METADATA : {<Metadata.USES_HEALTHBURDEN: 4>, <Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>}

    +

    CAUSES_OF_DEATH : {‘TB’: <tlo.methods.causes.Cause object at 0x15e236250>, ‘AIDS_TB’: <tlo.methods.causes.Cause object at 0x15e236ed0>}

    +

    CAUSES_OF_DISABILITY : {‘TB’: <tlo.methods.causes.Cause object at 0x15e234b90>}

    +

    INIT_DEPENDENCIES : {‘HealthSystem’, ‘Lifestyle’, ‘Demography’, ‘Epi’, ‘SymptomManager’}

    +

    METADATA : {<Metadata.DISEASE_MODULE: 1>, <Metadata.USES_SYMPTOMMANAGER: 2>, <Metadata.USES_HEALTHSYSTEM: 3>, <Metadata.USES_HEALTHBURDEN: 4>}

    OPTIONAL_INIT_DEPENDENCIES : {‘HealthBurden’, ‘Hiv’}

    SYMPTOMS : {‘night_sweats’, ‘fatigue’}

    __annotations__ : {}

    @@ -1151,7 +1151,7 @@

    Bases: tlo.methods.hsi_event.HSI_Event, tlo.events.IndividualScopeEventMixin

    Class attributes:

    -

    EXPECTED_APPT_FOOTPRINT : <property object at 0x14f55e890>

    +

    EXPECTED_APPT_FOOTPRINT : <property object at 0x15e5d1fd0>

    __annotations__ : {}

    Functions (defined or overridden in class HSI_Tb_StartTreatment):

    diff --git a/reference/tlo.methods.wasting.html b/reference/tlo.methods.wasting.html index 9084f3818b..09e255ee95 100644 --- a/reference/tlo.methods.wasting.html +++ b/reference/tlo.methods.wasting.html @@ -6,7 +6,7 @@ - tlo.methods.wasting module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.methods.wasting module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.population.html b/reference/tlo.population.html index 61d0ff390b..226c4ad0d0 100644 --- a/reference/tlo.population.html +++ b/reference/tlo.population.html @@ -6,7 +6,7 @@ - tlo.population module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.population module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.progressbar.html b/reference/tlo.progressbar.html index c1d7dc4e82..ce7b7b12d7 100644 --- a/reference/tlo.progressbar.html +++ b/reference/tlo.progressbar.html @@ -6,7 +6,7 @@ - tlo.progressbar module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.progressbar module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.scenario.html b/reference/tlo.scenario.html index 979d0e43db..79365d0b30 100644 --- a/reference/tlo.scenario.html +++ b/reference/tlo.scenario.html @@ -6,7 +6,7 @@ - tlo.scenario module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.scenario module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.simulation.html b/reference/tlo.simulation.html index a4b6845c18..8e9a2ae622 100644 --- a/reference/tlo.simulation.html +++ b/reference/tlo.simulation.html @@ -6,7 +6,7 @@ - tlo.simulation module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.simulation module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.test.html b/reference/tlo.test.html index 1b32bd2b7d..c793d45dcd 100644 --- a/reference/tlo.test.html +++ b/reference/tlo.test.html @@ -6,7 +6,7 @@ - tlo.test package — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.test package — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.test.random_birth.html b/reference/tlo.test.random_birth.html index 771187c755..fc4767a397 100644 --- a/reference/tlo.test.random_birth.html +++ b/reference/tlo.test.random_birth.html @@ -6,7 +6,7 @@ - tlo.test.random_birth module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.test.random_birth module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.test.random_death.html b/reference/tlo.test.random_death.html index 03c08817fc..0f8863c48d 100644 --- a/reference/tlo.test.random_death.html +++ b/reference/tlo.test.random_death.html @@ -6,7 +6,7 @@ - tlo.test.random_death module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.test.random_death module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/reference/tlo.util.html b/reference/tlo.util.html index 48230061c3..328025784b 100644 --- a/reference/tlo.util.html +++ b/reference/tlo.util.html @@ -6,7 +6,7 @@ - tlo.util module — TLOmodel 0.1.dev2476+g58256ce documentation + tlo.util module — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + @@ -502,6 +502,23 @@
    +
    +
    +parse_csv_values_for_columns_with_mixed_datatypes(value: Any)
    +

    Pandas pandas.read_csv() function handles columns with mixed data types by defaulting to the object +data type, which often results in values being interpreted as strings. The most common place for this in TLO is +when we are reading parameters. This is not a problem when the parameters are read in read parameters method +using load_parameters_from_dataframe method as parameter values are mapped to their defined datatypes.

    +

    Problems arise when you’re trying to directly use the output from the csv files like it is within some few files +in TLO. This method tries to provide a fix by parsing the parameter values in those few places to their best +possible data types

    +
    +
    Parameters:
    +

    value – mixed datatype column value

    +
    +
    +
    +

    diff --git a/resources/ResourceFile_AbortionAndMiscarriage.xlsx.html b/resources/ResourceFile_AbortionAndMiscarriage.xlsx.html index 0ab7ca051c..99dd3283cb 100644 --- a/resources/ResourceFile_AbortionAndMiscarriage.xlsx.html +++ b/resources/ResourceFile_AbortionAndMiscarriage.xlsx.html @@ -6,7 +6,7 @@ - AbortionAndMiscarriage (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + AbortionAndMiscarriage (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Alri.xlsx.html b/resources/ResourceFile_Alri.xlsx.html index e9ed77338b..0d89a9f024 100644 --- a/resources/ResourceFile_Alri.xlsx.html +++ b/resources/ResourceFile_Alri.xlsx.html @@ -6,7 +6,7 @@ - Alri (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Alri (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_AntenatalCare.xlsx.html b/resources/ResourceFile_AntenatalCare.xlsx.html index 3710e40bc4..a82e1f337a 100644 --- a/resources/ResourceFile_AntenatalCare.xlsx.html +++ b/resources/ResourceFile_AntenatalCare.xlsx.html @@ -6,7 +6,7 @@ - AntenatalCare (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + AntenatalCare (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Bladder_Cancer.xlsx.html b/resources/ResourceFile_Bladder_Cancer.xlsx.html index 3373bdc1b6..a0bae943d0 100644 --- a/resources/ResourceFile_Bladder_Cancer.xlsx.html +++ b/resources/ResourceFile_Bladder_Cancer.xlsx.html @@ -6,7 +6,7 @@ - Bladder Cancer (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Bladder Cancer (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Breast_Cancer.xlsx.html b/resources/ResourceFile_Breast_Cancer.xlsx.html index b7731d7a2d..0e0f95696d 100644 --- a/resources/ResourceFile_Breast_Cancer.xlsx.html +++ b/resources/ResourceFile_Breast_Cancer.xlsx.html @@ -6,7 +6,7 @@ - Breast Cancer (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Breast Cancer (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Childhood_Pneumonia.xlsx.html b/resources/ResourceFile_Childhood_Pneumonia.xlsx.html index d799b42882..031d3eb2c6 100644 --- a/resources/ResourceFile_Childhood_Pneumonia.xlsx.html +++ b/resources/ResourceFile_Childhood_Pneumonia.xlsx.html @@ -6,7 +6,7 @@ - Childhood Pneumonia (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Childhood Pneumonia (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Copd.csv.html b/resources/ResourceFile_Copd.csv.html index a8e5b10e33..eb201a9828 100644 --- a/resources/ResourceFile_Copd.csv.html +++ b/resources/ResourceFile_Copd.csv.html @@ -6,7 +6,7 @@ - Copd (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Copd (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_DALY_Weights.csv.html b/resources/ResourceFile_DALY_Weights.csv.html index 78b4732495..4c2f1a81ee 100644 --- a/resources/ResourceFile_DALY_Weights.csv.html +++ b/resources/ResourceFile_DALY_Weights.csv.html @@ -6,7 +6,7 @@ - DALY Weights (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + DALY Weights (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Depression.xlsx.html b/resources/ResourceFile_Depression.xlsx.html index 777c6612e5..93671a07b7 100644 --- a/resources/ResourceFile_Depression.xlsx.html +++ b/resources/ResourceFile_Depression.xlsx.html @@ -6,7 +6,7 @@ - Depression (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Depression (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Diarrhoea.xlsx.html b/resources/ResourceFile_Diarrhoea.xlsx.html index a8fc11db6d..bfdfe6961e 100644 --- a/resources/ResourceFile_Diarrhoea.xlsx.html +++ b/resources/ResourceFile_Diarrhoea.xlsx.html @@ -6,7 +6,7 @@ - Diarrhoea (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Diarrhoea (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_EPI_WHO_estimates.xlsx.html b/resources/ResourceFile_EPI_WHO_estimates.xlsx.html index 963af1972e..67bbde3755 100644 --- a/resources/ResourceFile_EPI_WHO_estimates.xlsx.html +++ b/resources/ResourceFile_EPI_WHO_estimates.xlsx.html @@ -6,7 +6,7 @@ - EPI WHO estimates (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + EPI WHO estimates (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_EPI_vaccine_coverage.csv.html b/resources/ResourceFile_EPI_vaccine_coverage.csv.html index 9c8f7b8ecf..460dc27dbe 100644 --- a/resources/ResourceFile_EPI_vaccine_coverage.csv.html +++ b/resources/ResourceFile_EPI_vaccine_coverage.csv.html @@ -6,7 +6,7 @@ - EPI vaccine coverage (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + EPI vaccine coverage (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_GenericSymptoms_and_HealthSeeking.csv.html b/resources/ResourceFile_GenericSymptoms_and_HealthSeeking.csv.html index c26ce9a4a7..7a15d8d3b7 100644 --- a/resources/ResourceFile_GenericSymptoms_and_HealthSeeking.csv.html +++ b/resources/ResourceFile_GenericSymptoms_and_HealthSeeking.csv.html @@ -6,7 +6,7 @@ - GenericSymptoms and HealthSeeking (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + GenericSymptoms and HealthSeeking (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_HIV.xlsx.html b/resources/ResourceFile_HIV.xlsx.html index 08e93c2404..cb21fb908e 100644 --- a/resources/ResourceFile_HIV.xlsx.html +++ b/resources/ResourceFile_HIV.xlsx.html @@ -6,7 +6,7 @@ - HIV (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + HIV (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_HealthSeekingBehaviour.csv.html b/resources/ResourceFile_HealthSeekingBehaviour.csv.html index 35a9b813d1..5994693504 100644 --- a/resources/ResourceFile_HealthSeekingBehaviour.csv.html +++ b/resources/ResourceFile_HealthSeekingBehaviour.csv.html @@ -6,7 +6,7 @@ - HealthSeekingBehaviour (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + HealthSeekingBehaviour (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_HypertensiveDisordersOfPregnancy.xlsx.html b/resources/ResourceFile_HypertensiveDisordersOfPregnancy.xlsx.html index 31dde5317f..ec1a37a532 100644 --- a/resources/ResourceFile_HypertensiveDisordersOfPregnancy.xlsx.html +++ b/resources/ResourceFile_HypertensiveDisordersOfPregnancy.xlsx.html @@ -6,7 +6,7 @@ - HypertensiveDisordersOfPregnancy (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + HypertensiveDisordersOfPregnancy (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Improved_Healthsystem_And_Healthcare_Seeking.xlsx.html b/resources/ResourceFile_Improved_Healthsystem_And_Healthcare_Seeking.xlsx.html index f64440f2db..3542c09a48 100644 --- a/resources/ResourceFile_Improved_Healthsystem_And_Healthcare_Seeking.xlsx.html +++ b/resources/ResourceFile_Improved_Healthsystem_And_Healthcare_Seeking.xlsx.html @@ -6,7 +6,7 @@ - Improved Healthsystem And Healthcare Seeking (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Improved Healthsystem And Healthcare Seeking (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_LabourSkilledBirthAttendance.xlsx.html b/resources/ResourceFile_LabourSkilledBirthAttendance.xlsx.html index 0f4713279b..be2ed7d65c 100644 --- a/resources/ResourceFile_LabourSkilledBirthAttendance.xlsx.html +++ b/resources/ResourceFile_LabourSkilledBirthAttendance.xlsx.html @@ -6,7 +6,7 @@ - LabourSkilledBirthAttendance (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + LabourSkilledBirthAttendance (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Lifestyle_Enhanced.xlsx.html b/resources/ResourceFile_Lifestyle_Enhanced.xlsx.html index 3a1f9d4ff4..2a9f68c63a 100644 --- a/resources/ResourceFile_Lifestyle_Enhanced.xlsx.html +++ b/resources/ResourceFile_Lifestyle_Enhanced.xlsx.html @@ -6,7 +6,7 @@ - Lifestyle Enhanced (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Lifestyle Enhanced (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Measles.xlsx.html b/resources/ResourceFile_Measles.xlsx.html index e027e73304..9d381baff9 100644 --- a/resources/ResourceFile_Measles.xlsx.html +++ b/resources/ResourceFile_Measles.xlsx.html @@ -6,7 +6,7 @@ - Measles (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Measles (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_NewbornOutcomes.xlsx.html b/resources/ResourceFile_NewbornOutcomes.xlsx.html index f1c8b0e0dd..acfc98b63b 100644 --- a/resources/ResourceFile_NewbornOutcomes.xlsx.html +++ b/resources/ResourceFile_NewbornOutcomes.xlsx.html @@ -6,7 +6,7 @@ - NewbornOutcomes (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + NewbornOutcomes (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Oesophageal_Cancer.xlsx.html b/resources/ResourceFile_Oesophageal_Cancer.xlsx.html index f476c3fa12..d34edafa07 100644 --- a/resources/ResourceFile_Oesophageal_Cancer.xlsx.html +++ b/resources/ResourceFile_Oesophageal_Cancer.xlsx.html @@ -6,7 +6,7 @@ - Oesophageal Cancer (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Oesophageal Cancer (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Other_Adult_Cancers.xlsx.html b/resources/ResourceFile_Other_Adult_Cancers.xlsx.html index d43b8841eb..2ad40ce87e 100644 --- a/resources/ResourceFile_Other_Adult_Cancers.xlsx.html +++ b/resources/ResourceFile_Other_Adult_Cancers.xlsx.html @@ -6,7 +6,7 @@ - Other Adult Cancers (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Other Adult Cancers (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_PostnatalSupervisor.xlsx.html b/resources/ResourceFile_PostnatalSupervisor.xlsx.html index 8b861351ac..722cebb844 100644 --- a/resources/ResourceFile_PostnatalSupervisor.xlsx.html +++ b/resources/ResourceFile_PostnatalSupervisor.xlsx.html @@ -6,7 +6,7 @@ - PostnatalSupervisor (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + PostnatalSupervisor (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_PregnancySupervisor.xlsx.html b/resources/ResourceFile_PregnancySupervisor.xlsx.html index c7fb460849..69d97b9613 100644 --- a/resources/ResourceFile_PregnancySupervisor.xlsx.html +++ b/resources/ResourceFile_PregnancySupervisor.xlsx.html @@ -6,7 +6,7 @@ - PregnancySupervisor (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + PregnancySupervisor (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Prostate_Cancer.xlsx.html b/resources/ResourceFile_Prostate_Cancer.xlsx.html index 445c32c4cb..f41056c382 100644 --- a/resources/ResourceFile_Prostate_Cancer.xlsx.html +++ b/resources/ResourceFile_Prostate_Cancer.xlsx.html @@ -6,7 +6,7 @@ - Prostate Cancer (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Prostate Cancer (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_RTI.xlsx.html b/resources/ResourceFile_RTI.xlsx.html index a0e3b2ada7..edd59c073a 100644 --- a/resources/ResourceFile_RTI.xlsx.html +++ b/resources/ResourceFile_RTI.xlsx.html @@ -6,7 +6,7 @@ - RTI (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + RTI (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Schisto.xlsx.html b/resources/ResourceFile_Schisto.xlsx.html index cfb6ba1d50..163d0fbfb2 100644 --- a/resources/ResourceFile_Schisto.xlsx.html +++ b/resources/ResourceFile_Schisto.xlsx.html @@ -6,7 +6,7 @@ - Schisto (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Schisto (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_Stunting.xlsx.html b/resources/ResourceFile_Stunting.xlsx.html index 81c0db0be0..0c56f25c00 100644 --- a/resources/ResourceFile_Stunting.xlsx.html +++ b/resources/ResourceFile_Stunting.xlsx.html @@ -6,7 +6,7 @@ - Stunting (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Stunting (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_SymptomManager.csv.html b/resources/ResourceFile_SymptomManager.csv.html index f542c70f4a..5ec6e54c79 100644 --- a/resources/ResourceFile_SymptomManager.csv.html +++ b/resources/ResourceFile_SymptomManager.csv.html @@ -6,7 +6,7 @@ - SymptomManager (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + SymptomManager (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/ResourceFile_TB.xlsx.html b/resources/ResourceFile_TB.xlsx.html index 910fe30b3e..8c8c2422b8 100644 --- a/resources/ResourceFile_TB.xlsx.html +++ b/resources/ResourceFile_TB.xlsx.html @@ -6,7 +6,7 @@ - TB (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + TB (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_condition_and_events_incidence.xlsx.html b/resources/cmd/ResourceFile_cmd_condition_and_events_incidence.xlsx.html index e0d17db20f..8cce265958 100644 --- a/resources/cmd/ResourceFile_cmd_condition_and_events_incidence.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_condition_and_events_incidence.xlsx.html @@ -6,7 +6,7 @@ - cmd condition and events incidence (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd condition and events incidence (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_condition_death.xlsx.html b/resources/cmd/ResourceFile_cmd_condition_death.xlsx.html index f5c99203f1..d1cb5a5dfc 100644 --- a/resources/cmd/ResourceFile_cmd_condition_death.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_condition_death.xlsx.html @@ -6,7 +6,7 @@ - cmd condition death (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd condition death (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_condition_hsi.xlsx.html b/resources/cmd/ResourceFile_cmd_condition_hsi.xlsx.html index ef3f2472e4..aa7daec38f 100644 --- a/resources/cmd/ResourceFile_cmd_condition_hsi.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_condition_hsi.xlsx.html @@ -6,7 +6,7 @@ - cmd condition hsi (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd condition hsi (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_condition_incidence.xlsx.html b/resources/cmd/ResourceFile_cmd_condition_incidence.xlsx.html index bbfb9ff90c..bb99da9a98 100644 --- a/resources/cmd/ResourceFile_cmd_condition_incidence.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_condition_incidence.xlsx.html @@ -6,7 +6,7 @@ - cmd condition incidence (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd condition incidence (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_condition_onset.xlsx.html b/resources/cmd/ResourceFile_cmd_condition_onset.xlsx.html index 026fe972fd..bf1cfabdb4 100644 --- a/resources/cmd/ResourceFile_cmd_condition_onset.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_condition_onset.xlsx.html @@ -6,7 +6,7 @@ - cmd condition onset (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd condition onset (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_condition_prevalence.xlsx.html b/resources/cmd/ResourceFile_cmd_condition_prevalence.xlsx.html index b20ac1db61..0a69cb27c4 100644 --- a/resources/cmd/ResourceFile_cmd_condition_prevalence.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_condition_prevalence.xlsx.html @@ -6,7 +6,7 @@ - cmd condition prevalence (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd condition prevalence (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_condition_removal.xlsx.html b/resources/cmd/ResourceFile_cmd_condition_removal.xlsx.html index a96c861574..99dc96bbc2 100644 --- a/resources/cmd/ResourceFile_cmd_condition_removal.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_condition_removal.xlsx.html @@ -6,7 +6,7 @@ - cmd condition removal (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd condition removal (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_condition_symptoms.xlsx.html b/resources/cmd/ResourceFile_cmd_condition_symptoms.xlsx.html index 3af31b0fd5..38d98d3e82 100644 --- a/resources/cmd/ResourceFile_cmd_condition_symptoms.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_condition_symptoms.xlsx.html @@ -6,7 +6,7 @@ - cmd condition symptoms (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd condition symptoms (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_condition_testing.xlsx.html b/resources/cmd/ResourceFile_cmd_condition_testing.xlsx.html index 2f7899d4ca..99ef19fe02 100644 --- a/resources/cmd/ResourceFile_cmd_condition_testing.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_condition_testing.xlsx.html @@ -6,7 +6,7 @@ - cmd condition testing (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd condition testing (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_event_incidence.xlsx.html b/resources/cmd/ResourceFile_cmd_event_incidence.xlsx.html index 3f68c91ef3..f3ab2d9525 100644 --- a/resources/cmd/ResourceFile_cmd_event_incidence.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_event_incidence.xlsx.html @@ -6,7 +6,7 @@ - cmd event incidence (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd event incidence (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_event_prevalence.xlsx.html b/resources/cmd/ResourceFile_cmd_event_prevalence.xlsx.html index edfbdff2d0..de6404fb7a 100644 --- a/resources/cmd/ResourceFile_cmd_event_prevalence.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_event_prevalence.xlsx.html @@ -6,7 +6,7 @@ - cmd event prevalence (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd event prevalence (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_events.xlsx.html b/resources/cmd/ResourceFile_cmd_events.xlsx.html index 93a6a03ceb..e597bcad64 100644 --- a/resources/cmd/ResourceFile_cmd_events.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_events.xlsx.html @@ -6,7 +6,7 @@ - cmd events (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd events (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_events_death.xlsx.html b/resources/cmd/ResourceFile_cmd_events_death.xlsx.html index dff154f0d7..1a8593a021 100644 --- a/resources/cmd/ResourceFile_cmd_events_death.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_events_death.xlsx.html @@ -6,7 +6,7 @@ - cmd events death (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd events death (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_events_hsi.xlsx.html b/resources/cmd/ResourceFile_cmd_events_hsi.xlsx.html index 41d737e22f..9f6200bb1f 100644 --- a/resources/cmd/ResourceFile_cmd_events_hsi.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_events_hsi.xlsx.html @@ -6,7 +6,7 @@ - cmd events hsi (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd events hsi (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_events_symptoms.xlsx.html b/resources/cmd/ResourceFile_cmd_events_symptoms.xlsx.html index 95ba20819a..f2483195da 100644 --- a/resources/cmd/ResourceFile_cmd_events_symptoms.xlsx.html +++ b/resources/cmd/ResourceFile_cmd_events_symptoms.xlsx.html @@ -6,7 +6,7 @@ - cmd events symptoms (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd events symptoms (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/ResourceFile_cmd_parameters.csv.html b/resources/cmd/ResourceFile_cmd_parameters.csv.html index f06de93000..973b44b7fe 100644 --- a/resources/cmd/ResourceFile_cmd_parameters.csv.html +++ b/resources/cmd/ResourceFile_cmd_parameters.csv.html @@ -6,7 +6,7 @@ - cmd parameters (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + cmd parameters (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/cmd/index.html b/resources/cmd/index.html index 85c9617084..47fb2408e8 100644 --- a/resources/cmd/index.html +++ b/resources/cmd/index.html @@ -6,7 +6,7 @@ - cmd — TLOmodel 0.1.dev2476+g58256ce documentation + cmd — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/contraception/ResourceFile_Contraception.xlsx.html b/resources/contraception/ResourceFile_Contraception.xlsx.html index b1e54b6569..391cbcd6e2 100644 --- a/resources/contraception/ResourceFile_Contraception.xlsx.html +++ b/resources/contraception/ResourceFile_Contraception.xlsx.html @@ -6,7 +6,7 @@ - Contraception (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Contraception (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/contraception/ResourceFile_ContraceptionAnalysisParams.csv.html b/resources/contraception/ResourceFile_ContraceptionAnalysisParams.csv.html index 0731b2c3ef..94b8d5a189 100644 --- a/resources/contraception/ResourceFile_ContraceptionAnalysisParams.csv.html +++ b/resources/contraception/ResourceFile_ContraceptionAnalysisParams.csv.html @@ -6,7 +6,7 @@ - ContraceptionAnalysisParams (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + ContraceptionAnalysisParams (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/contraception/ResourceFile_ContraceptionParams.csv.html b/resources/contraception/ResourceFile_ContraceptionParams.csv.html index 224e12fb59..6ea0a70b0b 100644 --- a/resources/contraception/ResourceFile_ContraceptionParams.csv.html +++ b/resources/contraception/ResourceFile_ContraceptionParams.csv.html @@ -6,7 +6,7 @@ - ContraceptionParams (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + ContraceptionParams (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/contraception/index.html b/resources/contraception/index.html index 96f5beba18..4473d35b62 100644 --- a/resources/contraception/index.html +++ b/resources/contraception/index.html @@ -6,7 +6,7 @@ - contraception — TLOmodel 0.1.dev2476+g58256ce documentation + contraception — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/costing/ResourceFile_Costing.xlsx.html b/resources/costing/ResourceFile_Costing.xlsx.html index b5cf1a62a7..7354457492 100644 --- a/resources/costing/ResourceFile_Costing.xlsx.html +++ b/resources/costing/ResourceFile_Costing.xlsx.html @@ -6,7 +6,7 @@ - Costing (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Costing (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/costing/index.html b/resources/costing/index.html index 071c46b511..e6f02cdc0b 100644 --- a/resources/costing/index.html +++ b/resources/costing/index.html @@ -6,7 +6,7 @@ - costing — TLOmodel 0.1.dev2476+g58256ce documentation + costing — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_ASFR_DHS.csv.html b/resources/demography/ResourceFile_ASFR_DHS.csv.html index eda4dfda31..2e695ffd45 100644 --- a/resources/demography/ResourceFile_ASFR_DHS.csv.html +++ b/resources/demography/ResourceFile_ASFR_DHS.csv.html @@ -6,7 +6,7 @@ - ASFR DHS (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + ASFR DHS (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_ASFR_WPP.csv.html b/resources/demography/ResourceFile_ASFR_WPP.csv.html index 67d409d1ea..7d28d76711 100644 --- a/resources/demography/ResourceFile_ASFR_WPP.csv.html +++ b/resources/demography/ResourceFile_ASFR_WPP.csv.html @@ -6,7 +6,7 @@ - ASFR WPP (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + ASFR WPP (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_Births_2018Census.csv.html b/resources/demography/ResourceFile_Births_2018Census.csv.html index 052b8b9ac6..4bd5dff3ef 100644 --- a/resources/demography/ResourceFile_Births_2018Census.csv.html +++ b/resources/demography/ResourceFile_Births_2018Census.csv.html @@ -6,7 +6,7 @@ - Births 2018Census (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Births 2018Census (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_Deaths_2018Census.csv.html b/resources/demography/ResourceFile_Deaths_2018Census.csv.html index 7aaad573b2..c639caf628 100644 --- a/resources/demography/ResourceFile_Deaths_2018Census.csv.html +++ b/resources/demography/ResourceFile_Deaths_2018Census.csv.html @@ -6,7 +6,7 @@ - Deaths 2018Census (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Deaths 2018Census (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_Demography_parameters.csv.html b/resources/demography/ResourceFile_Demography_parameters.csv.html index 6ab8c6ad34..d2f3088a56 100644 --- a/resources/demography/ResourceFile_Demography_parameters.csv.html +++ b/resources/demography/ResourceFile_Demography_parameters.csv.html @@ -6,7 +6,7 @@ - Demography parameters (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Demography parameters (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_Pop_Annual_WPP.csv.html b/resources/demography/ResourceFile_Pop_Annual_WPP.csv.html index 2a79fa9eca..5f4f9da36e 100644 --- a/resources/demography/ResourceFile_Pop_Annual_WPP.csv.html +++ b/resources/demography/ResourceFile_Pop_Annual_WPP.csv.html @@ -6,7 +6,7 @@ - Pop Annual WPP (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Pop Annual WPP (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_Pop_DeathRates_Expanded_WPP.csv.html b/resources/demography/ResourceFile_Pop_DeathRates_Expanded_WPP.csv.html index d7e2b94da3..a67e5f3b6b 100644 --- a/resources/demography/ResourceFile_Pop_DeathRates_Expanded_WPP.csv.html +++ b/resources/demography/ResourceFile_Pop_DeathRates_Expanded_WPP.csv.html @@ -6,7 +6,7 @@ - Pop DeathRates Expanded WPP (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Pop DeathRates Expanded WPP (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_Pop_DeathRates_WPP.csv.html b/resources/demography/ResourceFile_Pop_DeathRates_WPP.csv.html index 0902acba61..3c86f1f3b6 100644 --- a/resources/demography/ResourceFile_Pop_DeathRates_WPP.csv.html +++ b/resources/demography/ResourceFile_Pop_DeathRates_WPP.csv.html @@ -6,7 +6,7 @@ - Pop DeathRates WPP (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Pop DeathRates WPP (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_Pop_Frac_Births_Male.csv.html b/resources/demography/ResourceFile_Pop_Frac_Births_Male.csv.html index 8c669d3ff3..8fc1d9b4ce 100644 --- a/resources/demography/ResourceFile_Pop_Frac_Births_Male.csv.html +++ b/resources/demography/ResourceFile_Pop_Frac_Births_Male.csv.html @@ -6,7 +6,7 @@ - Pop Frac Births Male (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Pop Frac Births Male (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_Pop_WPP.csv.html b/resources/demography/ResourceFile_Pop_WPP.csv.html index 5da369df24..557140ac5d 100644 --- a/resources/demography/ResourceFile_Pop_WPP.csv.html +++ b/resources/demography/ResourceFile_Pop_WPP.csv.html @@ -6,7 +6,7 @@ - Pop WPP (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Pop WPP (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_PopulationSize_2018Census.csv.html b/resources/demography/ResourceFile_PopulationSize_2018Census.csv.html index 540208bc1d..9db559d16d 100644 --- a/resources/demography/ResourceFile_PopulationSize_2018Census.csv.html +++ b/resources/demography/ResourceFile_PopulationSize_2018Census.csv.html @@ -6,7 +6,7 @@ - PopulationSize 2018Census (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + PopulationSize 2018Census (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_Population_2010.csv.html b/resources/demography/ResourceFile_Population_2010.csv.html index d75515353b..441ddae2b5 100644 --- a/resources/demography/ResourceFile_Population_2010.csv.html +++ b/resources/demography/ResourceFile_Population_2010.csv.html @@ -6,7 +6,7 @@ - Population 2010 (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Population 2010 (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_TotalBirths_WPP.csv.html b/resources/demography/ResourceFile_TotalBirths_WPP.csv.html index 8108ef860c..13a3e42663 100644 --- a/resources/demography/ResourceFile_TotalBirths_WPP.csv.html +++ b/resources/demography/ResourceFile_TotalBirths_WPP.csv.html @@ -6,7 +6,7 @@ - TotalBirths WPP (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + TotalBirths WPP (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_TotalDeaths_WPP.csv.html b/resources/demography/ResourceFile_TotalDeaths_WPP.csv.html index b3dff3eba1..cbc8754927 100644 --- a/resources/demography/ResourceFile_TotalDeaths_WPP.csv.html +++ b/resources/demography/ResourceFile_TotalDeaths_WPP.csv.html @@ -6,7 +6,7 @@ - TotalDeaths WPP (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + TotalDeaths WPP (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/ResourceFile_Under_Five_Mortality_DHS.csv.html b/resources/demography/ResourceFile_Under_Five_Mortality_DHS.csv.html index e6d12fdaa0..ebff331a99 100644 --- a/resources/demography/ResourceFile_Under_Five_Mortality_DHS.csv.html +++ b/resources/demography/ResourceFile_Under_Five_Mortality_DHS.csv.html @@ -6,7 +6,7 @@ - Under Five Mortality DHS (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Under Five Mortality DHS (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/demography/index.html b/resources/demography/index.html index 7f4f1def92..d414e503b1 100644 --- a/resources/demography/index.html +++ b/resources/demography/index.html @@ -6,7 +6,7 @@ - demography — TLOmodel 0.1.dev2476+g58256ce documentation + demography — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/epilepsy/IHME-GBD_2019_DATA-4a82f00e-1.csv.html b/resources/epilepsy/IHME-GBD_2019_DATA-4a82f00e-1.csv.html index 8fc50fa5e3..1c910e3bc1 100644 --- a/resources/epilepsy/IHME-GBD_2019_DATA-4a82f00e-1.csv.html +++ b/resources/epilepsy/IHME-GBD_2019_DATA-4a82f00e-1.csv.html @@ -6,7 +6,7 @@ - IHME-GBD 2019 DATA-4a82f00e-1 (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + IHME-GBD 2019 DATA-4a82f00e-1 (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/epilepsy/ResourceFile_Epilepsy.xlsx.html b/resources/epilepsy/ResourceFile_Epilepsy.xlsx.html index 32ca690237..b29a1336d6 100644 --- a/resources/epilepsy/ResourceFile_Epilepsy.xlsx.html +++ b/resources/epilepsy/ResourceFile_Epilepsy.xlsx.html @@ -6,7 +6,7 @@ - Epilepsy (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + Epilepsy (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/epilepsy/index.html b/resources/epilepsy/index.html index b083751058..1ace65da3e 100644 --- a/resources/epilepsy/index.html +++ b/resources/epilepsy/index.html @@ -6,7 +6,7 @@ - epilepsy — TLOmodel 0.1.dev2476+g58256ce documentation + epilepsy — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/gbd/ResourceFile_CausesOfDALYS_GBD2019.csv.html b/resources/gbd/ResourceFile_CausesOfDALYS_GBD2019.csv.html index aa7eec927d..32383cd6b3 100644 --- a/resources/gbd/ResourceFile_CausesOfDALYS_GBD2019.csv.html +++ b/resources/gbd/ResourceFile_CausesOfDALYS_GBD2019.csv.html @@ -6,7 +6,7 @@ - CausesOfDALYS GBD2019 (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + CausesOfDALYS GBD2019 (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/gbd/ResourceFile_CausesOfDeath_GBD2019.csv.html b/resources/gbd/ResourceFile_CausesOfDeath_GBD2019.csv.html index ffbb6b0a02..cf712cf4f6 100644 --- a/resources/gbd/ResourceFile_CausesOfDeath_GBD2019.csv.html +++ b/resources/gbd/ResourceFile_CausesOfDeath_GBD2019.csv.html @@ -6,7 +6,7 @@ - CausesOfDeath GBD2019 (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + CausesOfDeath GBD2019 (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/gbd/ResourceFile_Deaths_And_DALYS_GBD2019.csv.html b/resources/gbd/ResourceFile_Deaths_And_DALYS_GBD2019.csv.html index ae5e73c06a..79d2e7d78c 100644 --- a/resources/gbd/ResourceFile_Deaths_And_DALYS_GBD2019.csv.html +++ b/resources/gbd/ResourceFile_Deaths_And_DALYS_GBD2019.csv.html @@ -6,7 +6,7 @@ - Deaths And DALYS GBD2019 (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Deaths And DALYS GBD2019 (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/gbd/ResourceFile_TotalDeaths_GBD2019.csv.html b/resources/gbd/ResourceFile_TotalDeaths_GBD2019.csv.html index 1ff46cac18..637738ba70 100644 --- a/resources/gbd/ResourceFile_TotalDeaths_GBD2019.csv.html +++ b/resources/gbd/ResourceFile_TotalDeaths_GBD2019.csv.html @@ -6,7 +6,7 @@ - TotalDeaths GBD2019 (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + TotalDeaths GBD2019 (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/gbd/index.html b/resources/gbd/index.html index f67c8af807..66055e8c81 100644 --- a/resources/gbd/index.html +++ b/resources/gbd/index.html @@ -6,7 +6,7 @@ - gbd — TLOmodel 0.1.dev2476+g58256ce documentation + gbd — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/ResourceFile_HealthSystem_parameters.csv.html b/resources/healthsystem/ResourceFile_HealthSystem_parameters.csv.html index e7a9e12d5d..2848379da1 100644 --- a/resources/healthsystem/ResourceFile_HealthSystem_parameters.csv.html +++ b/resources/healthsystem/ResourceFile_HealthSystem_parameters.csv.html @@ -6,7 +6,7 @@ - HealthSystem parameters (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + HealthSystem parameters (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/consumables/ResourceFile_Consumables_Item_Designations.csv.html b/resources/healthsystem/consumables/ResourceFile_Consumables_Item_Designations.csv.html index 9bdcc905f7..9a35cb5ee4 100644 --- a/resources/healthsystem/consumables/ResourceFile_Consumables_Item_Designations.csv.html +++ b/resources/healthsystem/consumables/ResourceFile_Consumables_Item_Designations.csv.html @@ -6,7 +6,7 @@ - Consumables Item Designations (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Consumables Item Designations (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/consumables/ResourceFile_Consumables_Items_and_Packages.csv.html b/resources/healthsystem/consumables/ResourceFile_Consumables_Items_and_Packages.csv.html index e7ccb63cef..d601a4016f 100644 --- a/resources/healthsystem/consumables/ResourceFile_Consumables_Items_and_Packages.csv.html +++ b/resources/healthsystem/consumables/ResourceFile_Consumables_Items_and_Packages.csv.html @@ -6,7 +6,7 @@ - Consumables Items and Packages (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Consumables Items and Packages (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/consumables/ResourceFile_Consumables_availability_small.csv.html b/resources/healthsystem/consumables/ResourceFile_Consumables_availability_small.csv.html index 28919f673c..ecea9c982e 100644 --- a/resources/healthsystem/consumables/ResourceFile_Consumables_availability_small.csv.html +++ b/resources/healthsystem/consumables/ResourceFile_Consumables_availability_small.csv.html @@ -6,7 +6,7 @@ - Consumables availability small (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Consumables availability small (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/consumables/ResourceFile_consumables_matched.csv.html b/resources/healthsystem/consumables/ResourceFile_consumables_matched.csv.html index 47ddfa2c68..350d2048f9 100644 --- a/resources/healthsystem/consumables/ResourceFile_consumables_matched.csv.html +++ b/resources/healthsystem/consumables/ResourceFile_consumables_matched.csv.html @@ -6,7 +6,7 @@ - consumables matched (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + consumables matched (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/consumables/index.html b/resources/healthsystem/consumables/index.html index 49f0cff3f8..b39959c924 100644 --- a/resources/healthsystem/consumables/index.html +++ b/resources/healthsystem/consumables/index.html @@ -6,7 +6,7 @@ - consumables — TLOmodel 0.1.dev2476+g58256ce documentation + consumables — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/absenteeism/HHFA_amended_ResourceFile_patient_facing_time.xlsx.html b/resources/healthsystem/human_resources/absenteeism/HHFA_amended_ResourceFile_patient_facing_time.xlsx.html index 8a7dd983a9..54c1662d28 100644 --- a/resources/healthsystem/human_resources/absenteeism/HHFA_amended_ResourceFile_patient_facing_time.xlsx.html +++ b/resources/healthsystem/human_resources/absenteeism/HHFA_amended_ResourceFile_patient_facing_time.xlsx.html @@ -6,7 +6,7 @@ - HHFA amended ResourceFile patient facing time (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + HHFA amended ResourceFile patient facing time (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/absenteeism/index.html b/resources/healthsystem/human_resources/absenteeism/index.html index daca970f94..32da087f8d 100644 --- a/resources/healthsystem/human_resources/absenteeism/index.html +++ b/resources/healthsystem/human_resources/absenteeism/index.html @@ -6,7 +6,7 @@ - absenteeism — TLOmodel 0.1.dev2476+g58256ce documentation + absenteeism — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/actual/ResourceFile_Daily_Capabilities.csv.html b/resources/healthsystem/human_resources/actual/ResourceFile_Daily_Capabilities.csv.html index 0bf4151625..8651292979 100644 --- a/resources/healthsystem/human_resources/actual/ResourceFile_Daily_Capabilities.csv.html +++ b/resources/healthsystem/human_resources/actual/ResourceFile_Daily_Capabilities.csv.html @@ -6,7 +6,7 @@ - Daily Capabilities (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Daily Capabilities (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/actual/index.html b/resources/healthsystem/human_resources/actual/index.html index 17b4ce3740..d1d5393541 100644 --- a/resources/healthsystem/human_resources/actual/index.html +++ b/resources/healthsystem/human_resources/actual/index.html @@ -6,7 +6,7 @@ - actual — TLOmodel 0.1.dev2476+g58256ce documentation + actual — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/definitions/ResourceFile_ApptType_By_FacLevel.csv.html b/resources/healthsystem/human_resources/definitions/ResourceFile_ApptType_By_FacLevel.csv.html index 58a010b9b5..c2137844f8 100644 --- a/resources/healthsystem/human_resources/definitions/ResourceFile_ApptType_By_FacLevel.csv.html +++ b/resources/healthsystem/human_resources/definitions/ResourceFile_ApptType_By_FacLevel.csv.html @@ -6,7 +6,7 @@ - ApptType By FacLevel (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + ApptType By FacLevel (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/definitions/ResourceFile_Appt_Time_Table.csv.html b/resources/healthsystem/human_resources/definitions/ResourceFile_Appt_Time_Table.csv.html index eea900261b..40dad3c223 100644 --- a/resources/healthsystem/human_resources/definitions/ResourceFile_Appt_Time_Table.csv.html +++ b/resources/healthsystem/human_resources/definitions/ResourceFile_Appt_Time_Table.csv.html @@ -6,7 +6,7 @@ - Appt Time Table (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Appt Time Table (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/definitions/ResourceFile_Appt_Types_Table.csv.html b/resources/healthsystem/human_resources/definitions/ResourceFile_Appt_Types_Table.csv.html index 744ea1c55f..9edbab67ba 100644 --- a/resources/healthsystem/human_resources/definitions/ResourceFile_Appt_Types_Table.csv.html +++ b/resources/healthsystem/human_resources/definitions/ResourceFile_Appt_Types_Table.csv.html @@ -6,7 +6,7 @@ - Appt Types Table (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Appt Types Table (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/definitions/ResourceFile_Appts_That_Require_HCW_Who_Are_Not_Present.csv.html b/resources/healthsystem/human_resources/definitions/ResourceFile_Appts_That_Require_HCW_Who_Are_Not_Present.csv.html index 6408c30418..e84d6c9c8a 100644 --- a/resources/healthsystem/human_resources/definitions/ResourceFile_Appts_That_Require_HCW_Who_Are_Not_Present.csv.html +++ b/resources/healthsystem/human_resources/definitions/ResourceFile_Appts_That_Require_HCW_Who_Are_Not_Present.csv.html @@ -6,7 +6,7 @@ - Appts That Require HCW Who Are Not Present (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Appts That Require HCW Who Are Not Present (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/definitions/ResourceFile_Officer_Types_Table.csv.html b/resources/healthsystem/human_resources/definitions/ResourceFile_Officer_Types_Table.csv.html index d5983812b1..d7c0b77e29 100644 --- a/resources/healthsystem/human_resources/definitions/ResourceFile_Officer_Types_Table.csv.html +++ b/resources/healthsystem/human_resources/definitions/ResourceFile_Officer_Types_Table.csv.html @@ -6,7 +6,7 @@ - Officer Types Table (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Officer Types Table (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/definitions/index.html b/resources/healthsystem/human_resources/definitions/index.html index 65af818293..21f1b180eb 100644 --- a/resources/healthsystem/human_resources/definitions/index.html +++ b/resources/healthsystem/human_resources/definitions/index.html @@ -6,7 +6,7 @@ - definitions — TLOmodel 0.1.dev2476+g58256ce documentation + definitions — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/funded/ResourceFile_Daily_Capabilities.csv.html b/resources/healthsystem/human_resources/funded/ResourceFile_Daily_Capabilities.csv.html index db6efaa73b..fdf3893ec5 100644 --- a/resources/healthsystem/human_resources/funded/ResourceFile_Daily_Capabilities.csv.html +++ b/resources/healthsystem/human_resources/funded/ResourceFile_Daily_Capabilities.csv.html @@ -6,7 +6,7 @@ - Daily Capabilities (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Daily Capabilities (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/funded/index.html b/resources/healthsystem/human_resources/funded/index.html index bd7f96bbd8..f8e10ee7ee 100644 --- a/resources/healthsystem/human_resources/funded/index.html +++ b/resources/healthsystem/human_resources/funded/index.html @@ -6,7 +6,7 @@ - funded — TLOmodel 0.1.dev2476+g58256ce documentation + funded — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/funded_plus/ResourceFile_Daily_Capabilities.csv.html b/resources/healthsystem/human_resources/funded_plus/ResourceFile_Daily_Capabilities.csv.html index ee30e0dc5a..ec843b5bed 100644 --- a/resources/healthsystem/human_resources/funded_plus/ResourceFile_Daily_Capabilities.csv.html +++ b/resources/healthsystem/human_resources/funded_plus/ResourceFile_Daily_Capabilities.csv.html @@ -6,7 +6,7 @@ - Daily Capabilities (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Daily Capabilities (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/funded_plus/index.html b/resources/healthsystem/human_resources/funded_plus/index.html index 4baa4e7a18..8aac7381f6 100644 --- a/resources/healthsystem/human_resources/funded_plus/index.html +++ b/resources/healthsystem/human_resources/funded_plus/index.html @@ -6,7 +6,7 @@ - funded_plus — TLOmodel 0.1.dev2476+g58256ce documentation + funded_plus — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/index.html b/resources/healthsystem/human_resources/index.html index f269bf639e..4c34aa4615 100644 --- a/resources/healthsystem/human_resources/index.html +++ b/resources/healthsystem/human_resources/index.html @@ -6,7 +6,7 @@ - human_resources — TLOmodel 0.1.dev2476+g58256ce documentation + human_resources — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/scaling_capabilities/ResourceFile_HR_scaling_by_district.xlsx.html b/resources/healthsystem/human_resources/scaling_capabilities/ResourceFile_HR_scaling_by_district.xlsx.html index 6eb9292534..78fdc1297f 100644 --- a/resources/healthsystem/human_resources/scaling_capabilities/ResourceFile_HR_scaling_by_district.xlsx.html +++ b/resources/healthsystem/human_resources/scaling_capabilities/ResourceFile_HR_scaling_by_district.xlsx.html @@ -6,7 +6,7 @@ - HR scaling by district (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + HR scaling by district (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/scaling_capabilities/ResourceFile_HR_scaling_by_level_and_officer_type.xlsx.html b/resources/healthsystem/human_resources/scaling_capabilities/ResourceFile_HR_scaling_by_level_and_officer_type.xlsx.html index 1be82923b5..39248fa9c8 100644 --- a/resources/healthsystem/human_resources/scaling_capabilities/ResourceFile_HR_scaling_by_level_and_officer_type.xlsx.html +++ b/resources/healthsystem/human_resources/scaling_capabilities/ResourceFile_HR_scaling_by_level_and_officer_type.xlsx.html @@ -6,7 +6,7 @@ - HR scaling by level and officer type (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + HR scaling by level and officer type (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/scaling_capabilities/ResourceFile_dynamic_HR_scaling.xlsx.html b/resources/healthsystem/human_resources/scaling_capabilities/ResourceFile_dynamic_HR_scaling.xlsx.html index cfc5d590df..880d74f590 100644 --- a/resources/healthsystem/human_resources/scaling_capabilities/ResourceFile_dynamic_HR_scaling.xlsx.html +++ b/resources/healthsystem/human_resources/scaling_capabilities/ResourceFile_dynamic_HR_scaling.xlsx.html @@ -6,7 +6,7 @@ - dynamic HR scaling (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + dynamic HR scaling (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/human_resources/scaling_capabilities/index.html b/resources/healthsystem/human_resources/scaling_capabilities/index.html index 20426b54f9..6a2e40d21c 100644 --- a/resources/healthsystem/human_resources/scaling_capabilities/index.html +++ b/resources/healthsystem/human_resources/scaling_capabilities/index.html @@ -6,7 +6,7 @@ - scaling_capabilities — TLOmodel 0.1.dev2476+g58256ce documentation + scaling_capabilities — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/index.html b/resources/healthsystem/index.html index a600791a4f..7b73c17b64 100644 --- a/resources/healthsystem/index.html +++ b/resources/healthsystem/index.html @@ -6,7 +6,7 @@ - healthsystem — TLOmodel 0.1.dev2476+g58256ce documentation + healthsystem — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/infrastructure_and_equipment/ResourceFile_Bed_Capacity.csv.html b/resources/healthsystem/infrastructure_and_equipment/ResourceFile_Bed_Capacity.csv.html index 39ea2234ed..a4b576bca9 100644 --- a/resources/healthsystem/infrastructure_and_equipment/ResourceFile_Bed_Capacity.csv.html +++ b/resources/healthsystem/infrastructure_and_equipment/ResourceFile_Bed_Capacity.csv.html @@ -6,7 +6,7 @@ - Bed Capacity (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Bed Capacity (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/infrastructure_and_equipment/ResourceFile_EquipmentCatalogue.csv.html b/resources/healthsystem/infrastructure_and_equipment/ResourceFile_EquipmentCatalogue.csv.html index a86f19b0d5..e5edf3c650 100644 --- a/resources/healthsystem/infrastructure_and_equipment/ResourceFile_EquipmentCatalogue.csv.html +++ b/resources/healthsystem/infrastructure_and_equipment/ResourceFile_EquipmentCatalogue.csv.html @@ -6,7 +6,7 @@ - EquipmentCatalogue (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + EquipmentCatalogue (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/infrastructure_and_equipment/ResourceFile_Equipment_Availability_Estimates.csv.html b/resources/healthsystem/infrastructure_and_equipment/ResourceFile_Equipment_Availability_Estimates.csv.html index e8d6f12d30..6c9e94af72 100644 --- a/resources/healthsystem/infrastructure_and_equipment/ResourceFile_Equipment_Availability_Estimates.csv.html +++ b/resources/healthsystem/infrastructure_and_equipment/ResourceFile_Equipment_Availability_Estimates.csv.html @@ -6,7 +6,7 @@ - Equipment Availability Estimates (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Equipment Availability Estimates (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/infrastructure_and_equipment/index.html b/resources/healthsystem/infrastructure_and_equipment/index.html index 98bd83c456..35849e1ab2 100644 --- a/resources/healthsystem/infrastructure_and_equipment/index.html +++ b/resources/healthsystem/infrastructure_and_equipment/index.html @@ -6,7 +6,7 @@ - infrastructure_and_equipment — TLOmodel 0.1.dev2476+g58256ce documentation + infrastructure_and_equipment — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/organisation/ResourceFile_Master_Facilities_List.csv.html b/resources/healthsystem/organisation/ResourceFile_Master_Facilities_List.csv.html index 227c816bfb..ea0c6726e0 100644 --- a/resources/healthsystem/organisation/ResourceFile_Master_Facilities_List.csv.html +++ b/resources/healthsystem/organisation/ResourceFile_Master_Facilities_List.csv.html @@ -6,7 +6,7 @@ - Master Facilities List (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + Master Facilities List (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/organisation/index.html b/resources/healthsystem/organisation/index.html index 6a25d8e106..a505b0c51a 100644 --- a/resources/healthsystem/organisation/index.html +++ b/resources/healthsystem/organisation/index.html @@ -6,7 +6,7 @@ - organisation — TLOmodel 0.1.dev2476+g58256ce documentation + organisation — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/priority_policies/ResourceFile_PriorityRanking_ALLPOLICIES.xlsx.html b/resources/healthsystem/priority_policies/ResourceFile_PriorityRanking_ALLPOLICIES.xlsx.html index b73ee987ac..a268202c0e 100644 --- a/resources/healthsystem/priority_policies/ResourceFile_PriorityRanking_ALLPOLICIES.xlsx.html +++ b/resources/healthsystem/priority_policies/ResourceFile_PriorityRanking_ALLPOLICIES.xlsx.html @@ -6,7 +6,7 @@ - PriorityRanking ALLPOLICIES (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + PriorityRanking ALLPOLICIES (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/priority_policies/index.html b/resources/healthsystem/priority_policies/index.html index d655ff794f..9fbc3efd28 100644 --- a/resources/healthsystem/priority_policies/index.html +++ b/resources/healthsystem/priority_policies/index.html @@ -6,7 +6,7 @@ - priority_policies — TLOmodel 0.1.dev2476+g58256ce documentation + priority_policies — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/real_appt_usage_data/index.html b/resources/healthsystem/real_appt_usage_data/index.html index 8fd4eedce3..02a5f357fd 100644 --- a/resources/healthsystem/real_appt_usage_data/index.html +++ b/resources/healthsystem/real_appt_usage_data/index.html @@ -6,7 +6,7 @@ - real_appt_usage_data — TLOmodel 0.1.dev2476+g58256ce documentation + real_appt_usage_data — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/real_appt_usage_data/real_monthly_usage_of_appt_type.csv.html b/resources/healthsystem/real_appt_usage_data/real_monthly_usage_of_appt_type.csv.html index fd5d5934d3..f3d9aff388 100644 --- a/resources/healthsystem/real_appt_usage_data/real_monthly_usage_of_appt_type.csv.html +++ b/resources/healthsystem/real_appt_usage_data/real_monthly_usage_of_appt_type.csv.html @@ -6,7 +6,7 @@ - real monthly usage of appt type (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + real monthly usage of appt type (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/healthsystem/real_appt_usage_data/real_yearly_usage_of_TBNotifiedAll.csv.html b/resources/healthsystem/real_appt_usage_data/real_yearly_usage_of_TBNotifiedAll.csv.html index ac3e8d804b..be3eb9ff1f 100644 --- a/resources/healthsystem/real_appt_usage_data/real_yearly_usage_of_TBNotifiedAll.csv.html +++ b/resources/healthsystem/real_appt_usage_data/real_yearly_usage_of_TBNotifiedAll.csv.html @@ -6,7 +6,7 @@ - real yearly usage of TBNotifiedAll 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b/resources/index.html @@ -6,7 +6,7 @@ - Resource files — TLOmodel 0.1.dev2476+g58256ce documentation + Resource files — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/malaria/ResourceFile_malaria.xlsx.html b/resources/malaria/ResourceFile_malaria.xlsx.html index c802960d49..c629df7f7e 100644 --- a/resources/malaria/ResourceFile_malaria.xlsx.html +++ b/resources/malaria/ResourceFile_malaria.xlsx.html @@ -6,7 +6,7 @@ - malaria (.xlsx) — TLOmodel 0.1.dev2476+g58256ce documentation + malaria (.xlsx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/malaria/ResourceFile_malaria_ClinInc.csv.html b/resources/malaria/ResourceFile_malaria_ClinInc.csv.html index fa3b37abe1..3b15624fb8 100644 --- a/resources/malaria/ResourceFile_malaria_ClinInc.csv.html +++ b/resources/malaria/ResourceFile_malaria_ClinInc.csv.html @@ -6,7 +6,7 @@ - malaria ClinInc (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + malaria ClinInc (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/malaria/ResourceFile_malaria_ClinInc_expanded.csv.html b/resources/malaria/ResourceFile_malaria_ClinInc_expanded.csv.html index c5ed9ec25e..abb2320735 100644 --- a/resources/malaria/ResourceFile_malaria_ClinInc_expanded.csv.html +++ b/resources/malaria/ResourceFile_malaria_ClinInc_expanded.csv.html @@ -6,7 +6,7 @@ - malaria ClinInc expanded (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + malaria ClinInc expanded (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/malaria/ResourceFile_malaria_InfInc.csv.html b/resources/malaria/ResourceFile_malaria_InfInc.csv.html index eca7eb4e5a..664f8f17fb 100644 --- a/resources/malaria/ResourceFile_malaria_InfInc.csv.html +++ b/resources/malaria/ResourceFile_malaria_InfInc.csv.html @@ -6,7 +6,7 @@ - malaria InfInc (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + malaria InfInc (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/malaria/ResourceFile_malaria_InfInc_expanded.csv.html b/resources/malaria/ResourceFile_malaria_InfInc_expanded.csv.html index 8796792a3b..a011c2ca36 100644 --- a/resources/malaria/ResourceFile_malaria_InfInc_expanded.csv.html +++ b/resources/malaria/ResourceFile_malaria_InfInc_expanded.csv.html @@ -6,7 +6,7 @@ - malaria InfInc expanded (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + malaria InfInc expanded (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/malaria/ResourceFile_malaria_SevInc.csv.html b/resources/malaria/ResourceFile_malaria_SevInc.csv.html index d94c18c54d..3029a024d8 100644 --- a/resources/malaria/ResourceFile_malaria_SevInc.csv.html +++ b/resources/malaria/ResourceFile_malaria_SevInc.csv.html @@ -6,7 +6,7 @@ - malaria SevInc (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + malaria SevInc (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/malaria/ResourceFile_malaria_SevInc_expanded.csv.html b/resources/malaria/ResourceFile_malaria_SevInc_expanded.csv.html index 46de28d1f7..ddae295c17 100644 --- a/resources/malaria/ResourceFile_malaria_SevInc_expanded.csv.html +++ b/resources/malaria/ResourceFile_malaria_SevInc_expanded.csv.html @@ -6,7 +6,7 @@ - malaria SevInc expanded (.csv) — TLOmodel 0.1.dev2476+g58256ce documentation + malaria SevInc expanded (.csv) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/malaria/index.html b/resources/malaria/index.html index 06edd5ca6a..1035661a4a 100644 --- a/resources/malaria/index.html +++ b/resources/malaria/index.html @@ -6,7 +6,7 @@ - malaria — TLOmodel 0.1.dev2476+g58256ce documentation + malaria — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + 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documentation + mwi admbnda adm0 nso 20181016 (.shp) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/mapping/ResourceFile_mwi_admbnda_adm0_nso_20181016.shx.html b/resources/mapping/ResourceFile_mwi_admbnda_adm0_nso_20181016.shx.html index 13c6baeba5..f1d70b0309 100644 --- a/resources/mapping/ResourceFile_mwi_admbnda_adm0_nso_20181016.shx.html +++ b/resources/mapping/ResourceFile_mwi_admbnda_adm0_nso_20181016.shx.html @@ -6,7 +6,7 @@ - mwi admbnda adm0 nso 20181016 (.shx) — TLOmodel 0.1.dev2476+g58256ce documentation + mwi admbnda adm0 nso 20181016 (.shx) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/mapping/ResourceFile_mwi_admbnda_adm1_nso_20181016.dbf.html b/resources/mapping/ResourceFile_mwi_admbnda_adm1_nso_20181016.dbf.html index b7050ac0bf..fa20978139 100644 --- a/resources/mapping/ResourceFile_mwi_admbnda_adm1_nso_20181016.dbf.html +++ 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0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/mapping/ResourceFile_mwi_admbnda_adm2_nso_20181016.shp.html b/resources/mapping/ResourceFile_mwi_admbnda_adm2_nso_20181016.shp.html index 3b025c42b1..f074cedfb2 100644 --- a/resources/mapping/ResourceFile_mwi_admbnda_adm2_nso_20181016.shp.html +++ b/resources/mapping/ResourceFile_mwi_admbnda_adm2_nso_20181016.shp.html @@ -6,7 +6,7 @@ - mwi admbnda adm2 nso 20181016 (.shp) — TLOmodel 0.1.dev2476+g58256ce documentation + mwi admbnda adm2 nso 20181016 (.shp) — TLOmodel 0.1.dev2485+gd6fcffd.d20241213 documentation @@ -15,7 +15,7 @@ - + diff --git a/resources/mapping/ResourceFile_mwi_admbnda_adm2_nso_20181016.shx.html b/resources/mapping/ResourceFile_mwi_admbnda_adm2_nso_20181016.shx.html index c2f98f454f..992477ff23 100644 --- a/resources/mapping/ResourceFile_mwi_admbnda_adm2_nso_20181016.shx.html +++ b/resources/mapping/ResourceFile_mwi_admbnda_adm2_nso_20181016.shx.html @@ -6,7 +6,7 @@ - mwi admbnda 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102], "prob_prolonged_diarr_campylobact": [12, 47, 102], "prob_prolonged_diarr_cryptosporidium": [12, 47, 102], "prob_prolonged_diarr_etec": [12, 47, 102], "prob_prolonged_diarr_noroviru": [12, 47, 102], "prob_prolonged_diarr_rotaviru": [12, 47, 102], "prob_prolonged_diarr_sapoviru": [12, 47, 102], "prob_prolonged_diarr_shigella": [12, 47, 102], "prob_prolonged_diarr_tepec": [12, 47, 102], "prob_prolonged_to_persistent_diarr": [12, 47, 102], "prob_prom_per_month": [12, 73, 117], "prob_pulmonary_complications_in_pneumonia": [12, 33], "prob_respiratory_distress_preterm": [12, 66, 113], "prob_retained_ipt_6_month": [12, 83], "prob_retained_placenta": 110, "prob_retinopathy_preterm_earli": [12, 66, 113], "prob_retinopathy_preterm_l": [12, 66, 113], "prob_retinopathy_severity_no_treat": [12, 66, 113], "prob_secondary_pph": [12, 70, 116], "prob_secondary_pph_sever": [12, 70, 116], "prob_seek_anc2": [12, 39, 95], "prob_seek_anc3": [12, 39, 95], "prob_seek_anc5": [12, 39, 95], 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-15,7 +15,7 @@ - +