diff --git a/workflows/cath-shared.nf b/workflows/cath-shared.nf index ad7d38e..aee95a7 100644 --- a/workflows/cath-shared.nf +++ b/workflows/cath-shared.nf @@ -9,7 +9,6 @@ params.cath_version = 'v4_3_0' params.publish_dir = "$workflow.launchDir/results-${params.dataset_name}" params.af_version = 4 params.af_download_stem = "gs://public-datasets-deepmind-alphafold-v${params.af_version}" -params.uniprot_ids_csv_fn = "${params.dataset_name}.uniprot_ids.csv" params.af_cif_raw_dir = "cif_raw" params.af_cif_chopped_dir = "cif_chopped" @@ -81,10 +80,10 @@ process uniprot_domain_to_uniprot { path uniprot_domain_id output: - path params.uniprot_ids_csv_fn + path 'uniprot_ids.txt' """ - cat ${uniprot_domain_id} | tr '/' ' ' | awk '{print \$1}' | sort | uniq > ${params.uniprot_ids_csv_fn} + cat ${uniprot_domain_id} | tr '/' ' ' | awk '{print \$1}' | sort | uniq > uniprot_ids.txt """ }