2021-05-17T15:54:44.1524825Z ##[section]Starting: run build_tarballs.jl 2021-05-17T15:54:44.1530148Z ============================================================================== 2021-05-17T15:54:44.1530456Z Task : Command line 2021-05-17T15:54:44.1530740Z Description : Run a command line script using Bash on Linux and macOS and cmd.exe on Windows 2021-05-17T15:54:44.1531011Z Version : 2.182.0 2021-05-17T15:54:44.1531205Z Author : Microsoft Corporation 2021-05-17T15:54:44.1531477Z Help : https://docs.microsoft.com/azure/devops/pipelines/tasks/utility/command-line 2021-05-17T15:54:44.1531802Z ============================================================================== 2021-05-17T15:54:44.2648955Z Generating script. 2021-05-17T15:54:44.2654672Z ========================== Starting Command Output =========================== 2021-05-17T15:54:44.2670729Z [command]/bin/bash --noprofile --norc /agent/_work/_temp/f883ca19-2a16-420e-96a8-721c968953bf.sh 2021-05-17T15:55:00.8139214Z [ Info: Building for x86_64-w64-mingw32 2021-05-17T15:55:02.1867656Z  Updating registry at `/depot/registries/General` 2021-05-17T15:55:02.8115255Z [ Info: Cached file found in /depot/downloads/b34f217f55e8d13fe91943344dd34e7917c3d605803322da59c23bd2989d07bc-v4.8.0.zip 2021-05-17T15:55:03.7387305Z [ Info: Extracting zipball b34f217f55e8d13fe91943344dd34e7917c3d605803322da59c23bd2989d07bc-v4.8.0.zip... 2021-05-17T15:55:06.0313835Z  Resolving package versions... 2021-05-17T15:55:06.4835577Z [?25l[?25h Updating `/agent/_work/1/s/N/NetCDF/NetCDF@julia-1.3/build/x86_64-w64-mingw32/MkC9totq/x86_64-w64-mingw32-libgfortran3-cxx03/.project/Project.toml` 2021-05-17T15:55:06.4938361Z  [0234f1f7] + HDF5_jll v1.12.0+1 2021-05-17T15:55:06.4942073Z  [deac9b47] + LibCURL_jll v7.71.1+0 2021-05-17T15:55:06.4947903Z  [29816b5a] + LibSSH2_jll v1.9.0+3 2021-05-17T15:55:06.4952909Z  [c8ffd9c3] + MbedTLS_jll v2.16.8+1 2021-05-17T15:55:06.4957967Z  [83775a58] + Zlib_jll v1.2.12+1 2021-05-17T15:55:06.4962501Z  [8e850ede] + nghttp2_jll v1.40.0+2 2021-05-17T15:55:06.4964853Z  Updating `/agent/_work/1/s/N/NetCDF/NetCDF@julia-1.3/build/x86_64-w64-mingw32/MkC9totq/x86_64-w64-mingw32-libgfortran3-cxx03/.project/Manifest.toml` 2021-05-17T15:55:06.4967123Z  [34da2185] + Compat v2.2.1 2021-05-17T15:55:06.4968581Z  [692b3bcd] + JLLWrappers v1.3.0 2021-05-17T15:55:06.4969815Z  [21216c6a] + Preferences v1.2.2 2021-05-17T15:55:06.4974644Z  [0234f1f7] + HDF5_jll v1.12.0+1 2021-05-17T15:55:06.4979991Z  [458c3c95] + OpenSSL_jll v1.1.1+6 2021-05-17T15:55:06.4981387Z  [0dad84c5] + ArgTools v1.1.1 2021-05-17T15:55:06.4982899Z  [56f22d72] + Artifacts v1.3.0 2021-05-17T15:55:06.4985229Z  [2a0f44e3] + Base64 2021-05-17T15:55:06.4986762Z  [ade2ca70] + Dates 2021-05-17T15:55:06.4989161Z  [8bb1440f] + DelimitedFiles 2021-05-17T15:55:06.4990790Z  [8ba89e20] + Distributed 2021-05-17T15:55:06.4992176Z  [f43a241f] + Downloads v1.5.0 2021-05-17T15:55:06.4993905Z  [b77e0a4c] + InteractiveUtils 2021-05-17T15:55:06.4996268Z  [b27032c2] + LibCURL v0.6.3 2021-05-17T15:55:06.4998547Z  [76f85450] + LibGit2 2021-05-17T15:55:06.4999972Z  [8f399da3] + Libdl 2021-05-17T15:55:06.5001692Z  [37e2e46d] + LinearAlgebra 2021-05-17T15:55:06.5003587Z  [56ddb016] + Logging 2021-05-17T15:55:06.5005638Z  [d6f4376e] + Markdown 2021-05-17T15:55:06.5007591Z  [a63ad114] + Mmap 2021-05-17T15:55:06.5028152Z  [ca575930] + NetworkOptions v1.2.0 2021-05-17T15:55:06.5028970Z  [44cfe95a] + Pkg 2021-05-17T15:55:06.5029772Z  [de0858da] + Printf 2021-05-17T15:55:06.5031417Z  [3fa0cd96] + REPL 2021-05-17T15:55:06.5035536Z  [9a3f8284] + Random 2021-05-17T15:55:06.5037210Z  [ea8e919c] + SHA v0.5.7 2021-05-17T15:55:06.5038231Z  [9e88b42a] + Serialization 2021-05-17T15:55:06.5039308Z  [1a1011a3] + SharedArrays 2021-05-17T15:55:06.5040212Z  [6462fe0b] + Sockets 2021-05-17T15:55:06.5041035Z  [2f01184e] + SparseArrays 2021-05-17T15:55:06.5041843Z  [10745b16] + Statistics 2021-05-17T15:55:06.5042656Z  [fa267f1f] + TOML v1.0.3 2021-05-17T15:55:06.5043471Z  [a4e569a6] + Tar v1.9.2 2021-05-17T15:55:06.5044473Z  [8dfed614] + Test 2021-05-17T15:55:06.5045579Z  [cf7118a7] + UUIDs 2021-05-17T15:55:06.5046384Z  [4ec0a83e] + Unicode 2021-05-17T15:55:06.5047481Z  [deac9b47] + LibCURL_jll v7.71.1+0 2021-05-17T15:55:06.5052180Z  [29816b5a] + LibSSH2_jll v1.9.0+3 2021-05-17T15:55:06.5056871Z  [c8ffd9c3] + MbedTLS_jll v2.16.8+1 2021-05-17T15:55:06.5061258Z  [14a3606d] + MozillaCACerts_jll v2021.1.19+0 2021-05-17T15:55:06.5066236Z  [83775a58] + Zlib_jll v1.2.12+1 2021-05-17T15:55:06.5071277Z  [8e850ede] + nghttp2_jll v1.40.0+2 2021-05-17T15:55:06.5076425Z  [3f19e933] + p7zip_jll v16.2.1+1 2021-05-17T15:55:06.8059653Z [?25l[?25h┌ Warning: Symlink zconf.h from artifact ddf4513daee7cc7b17c306023cefcc64282809d2 already exists in artifact d2968ac3bf2d1efa4e8c56346a0bd7f705f5ba89 2021-05-17T15:55:06.8061549Z └ @ BinaryBuilderBase /depot/packages/BinaryBuilderBase/JLNug/src/Prefix.jl:221 2021-05-17T15:55:06.9207784Z ##[warning]Symlink zconf.h from artifact ddf4513daee7cc7b17c306023cefcc64282809d2 already exists in artifact d2968ac3bf2d1efa4e8c56346a0bd7f705f5ba89 2021-05-17T15:55:06.9225359Z ┌ Warning: Symlink zlib.h from artifact ddf4513daee7cc7b17c306023cefcc64282809d2 already exists in artifact d2968ac3bf2d1efa4e8c56346a0bd7f705f5ba89 2021-05-17T15:55:06.9226987Z └ @ BinaryBuilderBase /depot/packages/BinaryBuilderBase/JLNug/src/Prefix.jl:221 2021-05-17T15:55:06.9229184Z ##[warning]Symlink zlib.h from artifact ddf4513daee7cc7b17c306023cefcc64282809d2 already exists in artifact d2968ac3bf2d1efa4e8c56346a0bd7f705f5ba89 2021-05-17T15:55:09.8002692Z [ Info: Checking to see if /agent/_work/1/s/N/NetCDF/NetCDF@julia-1.3/build/x86_64-w64-mingw32/MkC9totq/ is encrypted... 2021-05-17T15:55:09.8291548Z [ Info: Checking to see if /depot/ is encrypted... 2021-05-17T15:55:13.4821934Z [15:55:13] verbose sandbox enabled (running in privileged container mode) 2021-05-17T15:55:13.4824234Z [15:55:13] Parsed --rootfs as "/depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325" 2021-05-17T15:55:13.4825623Z [15:55:13] Parsed --cd as "/workspace/srcdir" 2021-05-17T15:55:13.4827238Z [15:55:13] Parsed --workspace as "/agent/_work/1/s/N/NetCDF/NetCDF@julia-1.3/build/x86_64-w64-mingw32/MkC9totq" -> "/workspace" 2021-05-17T15:55:13.4828928Z [15:55:13] Parsed --workspace as "/agent/_work/1/s/N/NetCDF/NetCDF@julia-1.3/build/x86_64-w64-mingw32/MkC9totq/metadir" -> "/meta" 2021-05-17T15:55:13.4830265Z [15:55:13] Parsed --workspace as "/tmp/jl_L9Beo0" -> "/opt/bin" 2021-05-17T15:55:13.4831777Z [15:55:13] Parsed --workspace as "/tmp/jl_QEteC6" -> "/opt/toolchains" 2021-05-17T15:55:13.4833587Z [15:55:13] Parsed --workspace as "/depot/ccache" -> "/root/.ccache" 2021-05-17T15:55:13.4834796Z [15:55:13] Parsed --workspace as "/tmp/jl_G27Iyh" -> "/etc/resolv.conf" 2021-05-17T15:55:13.4837666Z [15:55:13] Parsed --map as "/depot/artifacts/73320b07bda323ecb2832881d39e021a7a494a41" -> "/opt/x86_64-w64-mingw32/PlatformSupport-2021.1.28" 2021-05-17T15:55:13.4840268Z [15:55:13] Parsed --map as "/depot/artifacts/217a1339fc81b7388fc8af3fc8a05bca7b7ced19" -> "/opt/x86_64-w64-mingw32/GCCBootstrap-4.8.5" 2021-05-17T15:55:13.4842805Z [15:55:13] Parsed --map as "/depot/artifacts/0dbbe23941529c027bea16a585cb971f26ac058c" -> "/opt/x86_64-linux-musl/LLVMBootstrap-11.0.1" 2021-05-17T15:55:13.4845376Z [15:55:13] Parsed --map as "/depot/artifacts/4cf982ad782ccd05e46379eddb82c6bae1d23a47" -> "/opt/x86_64-linux-musl/PlatformSupport-2021.1.28" 2021-05-17T15:55:13.4848255Z [15:55:13] Parsed --map as "/depot/artifacts/e5229ab63cfb1c1deb9c8f461889787e648eaeba" -> "/opt/x86_64-linux-musl/GCCBootstrap-4.8.5" 2021-05-17T15:55:13.4850770Z [15:55:13] --> Creating overlay workdir at /proc 2021-05-17T15:55:13.4853642Z [15:55:13] --> Mounting overlay of /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325 at /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325 (modifications in /proc/upper/rootfs, workspace in /proc/work/rootfs) 2021-05-17T15:55:13.4857122Z [15:55:13] --> mapping /depot/artifacts/e5229ab63cfb1c1deb9c8f461889787e648eaeba to /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/opt/x86_64-linux-musl/GCCBootstrap-4.8.5 2021-05-17T15:55:13.4860559Z [15:55:13] --> mapping /depot/artifacts/4cf982ad782ccd05e46379eddb82c6bae1d23a47 to /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/opt/x86_64-linux-musl/PlatformSupport-2021.1.28 2021-05-17T15:55:13.4863694Z [15:55:13] --> mapping /depot/artifacts/0dbbe23941529c027bea16a585cb971f26ac058c to /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/opt/x86_64-linux-musl/LLVMBootstrap-11.0.1 2021-05-17T15:55:13.4866772Z [15:55:13] --> mapping /depot/artifacts/217a1339fc81b7388fc8af3fc8a05bca7b7ced19 to /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/opt/x86_64-w64-mingw32/GCCBootstrap-4.8.5 2021-05-17T15:55:13.4869860Z [15:55:13] --> mapping /depot/artifacts/73320b07bda323ecb2832881d39e021a7a494a41 to /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/opt/x86_64-w64-mingw32/PlatformSupport-2021.1.28 2021-05-17T15:55:13.4874528Z [15:55:13] --> Mounting overlay of /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/opt/x86_64-w64-mingw32/PlatformSupport-2021.1.28:/depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/opt/x86_64-w64-mingw32/GCCBootstrap-4.8.5 at /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/opt/x86_64-w64-mingw32 (modifications in /proc/upper/x86_64-w64-mingw32, workspace in /proc/work/x86_64-w64-mingw32) 2021-05-17T15:55:13.4881023Z [15:55:13] --> Mounting overlay of /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/opt/x86_64-linux-musl/LLVMBootstrap-11.0.1:/depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/opt/x86_64-linux-musl/PlatformSupport-2021.1.28:/depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/opt/x86_64-linux-musl/GCCBootstrap-4.8.5 at /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/opt/x86_64-linux-musl (modifications in /proc/upper/x86_64-linux-musl, workspace in /proc/work/x86_64-linux-musl) 2021-05-17T15:55:13.4885240Z [15:55:13] --> Mounting procfs at /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/proc 2021-05-17T15:55:13.4887526Z [15:55:13] --> Bind-mounting /dev/null over /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/dev/null 2021-05-17T15:55:13.4890402Z [15:55:13] --> Bind-mounting /dev/tty over /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/dev/tty 2021-05-17T15:55:13.4892721Z [15:55:13] --> Bind-mounting /dev/urandom over /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/dev/urandom 2021-05-17T15:55:13.4895541Z [15:55:13] --> Bind-mounting /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/dev/pts/ptmx over /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/dev/ptmx 2021-05-17T15:55:13.4898265Z [15:55:13] --> workspacing /tmp/jl_G27Iyh to /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/etc/resolv.conf 2021-05-17T15:55:13.4900531Z [15:55:13] --> workspacing /depot/ccache to /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/root/.ccache 2021-05-17T15:55:13.4902865Z [15:55:13] --> workspacing /tmp/jl_QEteC6 to /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/opt/toolchains 2021-05-17T15:55:13.4905141Z [15:55:13] --> workspacing /tmp/jl_L9Beo0 to /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/opt/bin 2021-05-17T15:55:13.4908077Z [15:55:13] --> workspacing /agent/_work/1/s/N/NetCDF/NetCDF@julia-1.3/build/x86_64-w64-mingw32/MkC9totq/metadir to /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/meta 2021-05-17T15:55:13.4910161Z [15:55:13] --> workspacing /agent/_work/1/s/N/NetCDF/NetCDF@julia-1.3/build/x86_64-w64-mingw32/MkC9totq to /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/workspace 2021-05-17T15:55:13.4911523Z [15:55:13] --> Mounting procfs at /proc 2021-05-17T15:55:13.4912440Z [15:55:13] Child Process PID is 59968 2021-05-17T15:55:13.4913510Z [15:55:13] --> Mapping 0:0 to root:root within container namespace 2021-05-17T15:55:13.4914836Z [15:55:13] --> Mounting procfs at /depot/artifacts/7fe81cdb1a0a6de39295f30e222283b79f12c325/proc 2021-05-17T15:55:13.4916134Z [15:55:13] About to run `/bin/bash` `-l` `-c` `# Stop if we hit any errors. 2021-05-17T15:55:13.4917076Z [15:55:13] set -e 2021-05-17T15:55:13.4917782Z [15:55:13]  2021-05-17T15:55:13.4918783Z [15:55:13] # If we're running as `bash`, then use the `DEBUG` and `ERR` traps 2021-05-17T15:55:13.4919878Z [15:55:13] if [ $(basename $0) = "bash" ]; then 2021-05-17T15:55:13.4920891Z [15:55:13]  trap "RET=\$?; \ 2021-05-17T15:55:13.4921906Z [15:55:13]  trap - DEBUG INT TERM ERR EXIT; \ 2021-05-17T15:55:13.4922843Z [15:55:13]  set +e +x; \ 2021-05-17T15:55:13.4923788Z [15:55:13]  auto_install_license; \ 2021-05-17T15:55:13.4924692Z [15:55:13]  save_env; \ 2021-05-17T15:55:13.4925621Z [15:55:13]  exit \$RET" \ 2021-05-17T15:55:13.4926512Z [15:55:13]  EXIT 2021-05-17T15:55:13.4927318Z [15:55:13]  2021-05-17T15:55:13.4928178Z [15:55:13]  trap "RET=\$?; \ 2021-05-17T15:55:13.4929181Z [15:55:13]  trap - DEBUG INT TERM ERR EXIT; \ 2021-05-17T15:55:13.4930153Z [15:55:13]  set +e +x; \ 2021-05-17T15:55:13.4931193Z [15:55:13]  echo Previous command \$! exited with \$RET >&2; \ 2021-05-17T15:55:13.4932232Z [15:55:13]  save_env; \ 2021-05-17T15:55:13.4933138Z [15:55:13]  exit \$RET" \ 2021-05-17T15:55:13.4934047Z [15:55:13]  INT TERM ERR 2021-05-17T15:55:13.4934787Z [15:55:13]  2021-05-17T15:55:13.4935704Z [15:55:13]  # Start saving everything into our history 2021-05-17T15:55:13.4937013Z [15:55:13]  trap save_history DEBUG 2021-05-17T15:55:13.4938159Z [15:55:13] else 2021-05-17T15:55:13.4939229Z [15:55:13]  # If we're running in `sh` or something like that, we need a 2021-05-17T15:55:13.4940389Z [15:55:13]  # slightly slimmer set of traps. :( 2021-05-17T15:55:13.4941426Z [15:55:13]  trap "RET=\$?; \ 2021-05-17T15:55:13.4942532Z [15:55:13]  echo Previous command exited with \$RET >&2; \ 2021-05-17T15:55:13.4943571Z [15:55:13]  set +e +x; \ 2021-05-17T15:55:13.4944467Z [15:55:13]  save_env; \ 2021-05-17T15:55:13.4945380Z [15:55:13]  exit \$RET" \ 2021-05-17T15:55:13.4946291Z [15:55:13]  EXIT INT TERM 2021-05-17T15:55:13.4947122Z [15:55:13] fi 2021-05-17T15:55:13.4947668Z [15:55:13]  2021-05-17T15:55:13.4948206Z [15:55:13] cd $WORKSPACE/srcdir/netcdf-c-* 2021-05-17T15:55:13.4948943Z [15:55:13]  2021-05-17T15:55:13.4949591Z [15:55:13] # -DH5_USE_110_API work-around for the error: 2021-05-17T15:55:13.4950408Z [15:55:13] # recompile your libhdf5 install using '--with-default-api-version=v18' 2021-05-17T15:55:13.4951240Z [15:55:13] # https://github.com/Unidata/netcdf-c/issues/1978 2021-05-17T15:55:13.4951997Z [15:55:13] export CPPFLAGS="-I${includedir} -DH5_USE_110_API" 2021-05-17T15:55:13.4952684Z [15:55:13] export LDFLAGS="-L${libdir}" 2021-05-17T15:55:13.4953331Z [15:55:13] export LDFLAGS_MAKE="${LDFLAGS}" 2021-05-17T15:55:13.4953860Z [15:55:13]  2021-05-17T15:55:13.4954415Z [15:55:13] if [[ ${target} == *-mingw* ]]; then 2021-05-17T15:55:13.4955151Z [15:55:13]  export LIBS="-lhdf5-0 -lhdf5_hl-0 -lcurl-4 -lz" 2021-05-17T15:55:13.4956119Z [15:55:13]  # linking fails with: "libtool: error: can't build x86_64-w64-mingw32 shared library unless -no-undefined is specified" 2021-05-17T15:55:13.4957045Z [15:55:13]  # unless -no-undefined is added to LDFLAGS 2021-05-17T15:55:13.4958027Z [15:55:13]  LDFLAGS_MAKE="${LDFLAGS} ${LIBS} -no-undefined" 2021-05-17T15:55:13.4958600Z [15:55:13]  2021-05-17T15:55:13.4959203Z [15:55:13] elif [[ "${target}" == *-apple-* ]]; then 2021-05-17T15:55:13.4959960Z [15:55:13]  # this file is referenced by hdf.h by not installed 2021-05-17T15:55:13.4960691Z [15:55:13]  touch ${includedir}/features.h 2021-05-17T15:55:13.4961279Z [15:55:13] fi 2021-05-17T15:55:13.4961722Z [15:55:13]  2021-05-17T15:55:13.4962237Z [15:55:13] ./configure --prefix=${prefix} \ 2021-05-17T15:55:13.4962842Z [15:55:13]  --build=${MACHTYPE} \ 2021-05-17T15:55:13.4963441Z [15:55:13]  --host=${target} \ 2021-05-17T15:55:13.4964029Z [15:55:13]  --disable-utilities \ 2021-05-17T15:55:13.4964601Z [15:55:13]  --enable-shared \ 2021-05-17T15:55:13.4965165Z [15:55:13]  --disable-static 2021-05-17T15:55:13.4965788Z [15:55:13] make LDFLAGS="${LDFLAGS_MAKE}" -j${nproc} 2021-05-17T15:55:13.4966378Z [15:55:13] make install 2021-05-17T15:55:13.4966906Z [15:55:13] nc-config --all 2021-05-17T15:55:13.4967352Z [15:55:13]  2021-05-17T15:55:13.4967791Z [15:55:13] `  2021-05-17T15:55:13.4968389Z [15:55:13]  ---> cd $WORKSPACE/srcdir/netcdf-c-* 2021-05-17T15:55:13.4969255Z [15:55:13]  ---> export CPPFLAGS="-I${includedir} -DH5_USE_110_API" 2021-05-17T15:55:13.4969974Z [15:55:13]  ---> export LDFLAGS="-L${libdir}" 2021-05-17T15:55:13.4970630Z [15:55:13]  ---> export LDFLAGS_MAKE="${LDFLAGS}" 2021-05-17T15:55:13.4971279Z [15:55:13]  ---> [[ ${target} == *-mingw* ]] 2021-05-17T15:55:13.4972018Z [15:55:13]  ---> export LIBS="-lhdf5-0 -lhdf5_hl-0 -lcurl-4 -lz" 2021-05-17T15:55:13.4972748Z [15:55:13]  ---> LDFLAGS_MAKE="${LDFLAGS} ${LIBS} -no-undefined" 2021-05-17T15:55:13.4973721Z [15:55:13]  ---> ./configure --prefix=${prefix} --build=${MACHTYPE} --host=${target} --disable-utilities --enable-shared --disable-static 2021-05-17T15:55:13.5230492Z [15:55:13] configure: netCDF 4.8.0 2021-05-17T15:55:13.5236052Z [15:55:13] date: invalid date '0' 2021-05-17T15:55:13.5380768Z [15:55:13] checking build system type... x86_64-pc-linux-musl 2021-05-17T15:55:13.5461754Z [15:55:13] checking host system type... x86_64-w64-mingw32 2021-05-17T15:55:13.5463250Z [15:55:13] checking target system type... x86_64-w64-mingw32 2021-05-17T15:55:13.5594255Z [15:55:13] checking for a BSD-compatible install... /usr/bin/install -c 2021-05-17T15:55:13.5611494Z [15:55:13] checking whether build environment is sane... yes 2021-05-17T15:55:13.5661893Z [15:55:13] checking for x86_64-w64-mingw32-strip... x86_64-w64-mingw32-strip 2021-05-17T15:55:13.5725417Z [15:55:13] checking for a thread-safe mkdir -p... ./install-sh -c -d 2021-05-17T15:55:13.5727752Z [15:55:13] checking for gawk... gawk 2021-05-17T15:55:13.5792811Z [15:55:13] checking whether make sets $(MAKE)... yes 2021-05-17T15:55:13.5835971Z [15:55:13] checking whether make supports nested variables... yes 2021-05-17T15:55:13.5890498Z [15:55:13] checking whether to enable maintainer-specific portions of Makefiles... no 2021-05-17T15:55:13.5892423Z [15:55:13] configure: checking supported formats 2021-05-17T15:55:13.5894281Z [15:55:13] checking whether we should build with netcdf4 (alias for HDF5)... yes (deprecated; Please use with --disable-hdf5) 2021-05-17T15:55:13.5896152Z [15:55:13] checking whether we should build with netcdf-4 (alias for HDF5)... yes 2021-05-17T15:55:13.5897635Z [15:55:13] checking whether we should build with HDF5... yes 2021-05-17T15:55:13.5898709Z [15:55:13] checking whether CDF5 support should be disabled... auto 2021-05-17T15:55:13.5899824Z [15:55:13] checking whether reading of HDF4 SD files is to be enabled... no 2021-05-17T15:55:13.5901066Z [15:55:13] checking whether parallel I/O for classic files is to be enabled... no 2021-05-17T15:55:13.5902171Z [15:55:13] checking whether DAP client(s) are to be built... yes 2021-05-17T15:55:13.5903322Z [15:55:13] checking whether netcdf zarr storage format should be enabled... no 2021-05-17T15:55:13.5904451Z [15:55:13] checking whether netcdf-4 should be forcibly enabled... yes 2021-05-17T15:55:13.5905435Z [15:55:13] configure: checking user options 2021-05-17T15:55:13.5906472Z [15:55:13] checking whether a NCIO_MINBLOCKSIZE was specified... 256 2021-05-17T15:55:13.5913193Z [15:55:13] checking for valgrind... no 2021-05-17T15:55:13.5922940Z [15:55:13] checking if fsync support is enabled... no 2021-05-17T15:55:13.5923968Z [15:55:13] checking if jna bug workaround is enabled... no 2021-05-17T15:55:13.5925090Z [15:55:13] checking if unfixed tests with memory leaks should be enabled... no 2021-05-17T15:55:13.5926203Z [15:55:13] checking if unit tests should be disabled... yes 2021-05-17T15:55:13.5927677Z [15:55:13] checking do we require hdf5 dynamic-loading support... yes 2021-05-17T15:55:13.5929060Z [15:55:13] checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no 2021-05-17T15:55:13.5930467Z [15:55:13] checking whether we should attempt to install netcdf-fortran (EXPERIMENTAL)... no 2021-05-17T15:55:13.5931646Z [15:55:13] checking whether parallel IO tests should be run... no 2021-05-17T15:55:13.5932811Z [15:55:13] checking whether a user specified program to run mpi programs... mpiexec 2021-05-17T15:55:13.5934012Z [15:55:13] checking whether a default chunk size in bytes was specified... 4194304 2021-05-17T15:55:13.5942382Z [15:55:13] checking whether a maximum per-variable cache size for HDF5 was specified... 67108864 2021-05-17T15:55:13.5951789Z [15:55:13] checking whether a number of chunks for the default per-variable cache was specified... 10 2021-05-17T15:55:13.5961274Z [15:55:13] checking whether a default file cache size for HDF5 was specified... 16777216 2021-05-17T15:55:13.5969106Z [15:55:13] checking whether a default file cache maximum number of elements for HDF5 was specified... 4133 2021-05-17T15:55:13.5978341Z [15:55:13] checking whether a default cache preemption for HDF5 was specified... 0.75 2021-05-17T15:55:13.5987902Z [15:55:13] checking whether netCDF-4 logging is enabled... no 2021-05-17T15:55:13.5989388Z [15:55:13] checking whether nc_set_log_level() function is included (will do nothing unless enable-logging is also used)... yes 2021-05-17T15:55:13.6061370Z [15:55:13] checking whether make supports the include directive... yes (GNU style) 2021-05-17T15:55:13.6063584Z [15:55:13] checking for x86_64-w64-mingw32-gcc... cc 2021-05-17T15:55:13.7010052Z [15:55:13] checking whether the C compiler works... yes 2021-05-17T15:55:13.7011367Z [15:55:13] checking for C compiler default output file name... a.exe 2021-05-17T15:55:13.7603742Z [15:55:13] checking for suffix of executables... .exe 2021-05-17T15:55:13.7620467Z [15:55:13] checking whether we are cross compiling... yes 2021-05-17T15:55:13.8082310Z [15:55:13] checking for suffix of object files... o 2021-05-17T15:55:13.8512478Z [15:55:13] checking whether we are using the GNU C compiler... yes 2021-05-17T15:55:13.8957676Z [15:55:13] checking whether cc accepts -g... yes 2021-05-17T15:55:13.9548212Z [15:55:13] checking for cc option to accept ISO C89... none needed 2021-05-17T15:55:13.9863712Z [15:55:13] checking whether cc understands -c and -o together... yes 2021-05-17T15:55:14.0282050Z [15:55:14] checking dependency style of cc... gcc3 2021-05-17T15:55:14.0886554Z [15:55:14] checking for curl_easy_setopt in -lcurl... yes 2021-05-17T15:55:14.1522334Z [15:55:14] checking for library containing curl_easy_setopt... none required 2021-05-17T15:55:14.5880012Z [15:55:14] checking whether CURLOPT_USERNAME is defined... yes 2021-05-17T15:55:15.0146120Z [15:55:15] checking whether CURLOPT_PASSWORD is defined... yes 2021-05-17T15:55:15.4387680Z [15:55:15] checking whether CURLOPT_KEYPASSWD is defined... yes 2021-05-17T15:55:15.8698128Z [15:55:15] checking whether CURLINFO_RESPONSE_CODE is defined... yes 2021-05-17T15:55:16.3124959Z [15:55:16] checking whether CURLOPT_BUFFERSIZE is defined... yes 2021-05-17T15:55:16.7433335Z [15:55:16] checking whether CURLOPT_TCP_KEEPALIVE is defined... yes 2021-05-17T15:55:17.1619609Z [15:55:17] checking whether libcurl is version 7.66 or later?... yes 2021-05-17T15:55:17.1620998Z [15:55:17] checking whether dap remote testing should be enabled (default off)... yes 2021-05-17T15:55:17.1622336Z [15:55:17] checking whether dap remote authorization testing should be enabled (default off)... no 2021-05-17T15:55:17.1624000Z [15:55:17] checking which remote test server(s) to use... remotetest.unidata.ucar.edu 2021-05-17T15:55:17.1633179Z [15:55:17] checking whether the time-consuming dap tests should be enabled (default off)... no 2021-05-17T15:55:17.1634669Z [15:55:17] checking whether netcdf zarr S3 support should be enabled... no 2021-05-17T15:55:17.1635791Z [15:55:17] checking whether netcdf zarr S3 testing should be enabled... no 2021-05-17T15:55:17.2190387Z [15:55:17] checking for zip_open in -lzip... no 2021-05-17T15:55:17.2191694Z [15:55:17] checking whether libzip library is available... no 2021-05-17T15:55:17.2192864Z [15:55:17] checking whether a default file cache size for NCZarr was specified... 4194304 2021-05-17T15:55:17.2201777Z [15:55:17] checking whether multi-filter support is enabled... yes 2021-05-17T15:55:17.2203156Z [15:55:17] checking whether to enable strict null-byte header padding when reading (default off)... no 2021-05-17T15:55:17.2204324Z [15:55:17] checking whether FFIO will be used... no 2021-05-17T15:55:17.2207624Z [15:55:17] checking whether STDIO will be used... no 2021-05-17T15:55:17.2208636Z [15:55:17] checking whether examples should be built... yes 2021-05-17T15:55:17.2209674Z [15:55:17] checking whether v2 netCDF API should be built... yes 2021-05-17T15:55:17.2220440Z [15:55:17] checking whether the ncgen/ncdump/nccopy should be built... no 2021-05-17T15:55:17.2221613Z [15:55:17] checking whether test should be built and run... yes 2021-05-17T15:55:17.2222755Z [15:55:17] checking whether large file (> 2GB) tests should be run... no 2021-05-17T15:55:17.2223852Z [15:55:17] checking whether benchmarks should be run... no 2021-05-17T15:55:17.2224918Z [15:55:17] checking whether extreme numbers should be used in tests... yes 2021-05-17T15:55:17.2226121Z [15:55:17] checking where to put large temp files if large file tests are run... . 2021-05-17T15:55:17.2235956Z [15:55:17] checking Extra values for _NCProperties... 2021-05-17T15:55:17.2246795Z [15:55:17] checking whether user-defined format 0 was specified... 2021-05-17T15:55:17.2249069Z [15:55:17] checking whether a magic number for user-defined format 0 was specified... 2021-05-17T15:55:17.2250219Z [15:55:17] checking whether user-defined format 1 was specified... 2021-05-17T15:55:17.2251413Z [15:55:17] checking whether a magic number for user-defined format 1 was specified... 2021-05-17T15:55:17.2252443Z [15:55:17] configure: finding C compiler 2021-05-17T15:55:17.2295517Z [15:55:17] checking for x86_64-w64-mingw32-gcc... (cached) cc 2021-05-17T15:55:17.2674471Z [15:55:17] checking whether we are using the GNU C compiler... (cached) yes 2021-05-17T15:55:17.2675650Z [15:55:17] checking whether cc accepts -g... (cached) yes 2021-05-17T15:55:17.2677645Z [15:55:17] checking for cc option to accept ISO C89... (cached) none needed 2021-05-17T15:55:17.2679100Z [15:55:17] checking whether cc understands -c and -o together... (cached) yes 2021-05-17T15:55:17.2682803Z [15:55:17] checking dependency style of cc... (cached) gcc3 2021-05-17T15:55:17.3542599Z [15:55:17] checking whether we are using the GNU C++ compiler... yes 2021-05-17T15:55:17.3993426Z [15:55:17] checking whether c++ accepts -g... yes 2021-05-17T15:55:17.4413998Z [15:55:17] checking dependency style of c++... gcc3 2021-05-17T15:55:17.4888841Z [15:55:17] checking for an ANSI C-conforming const... yes 2021-05-17T15:55:17.4889472Z [15:55:17] configure: setting up libtool 2021-05-17T15:55:17.4907857Z [15:55:17] checking how to print strings... printf 2021-05-17T15:55:17.4935045Z [15:55:17] checking for a sed that does not truncate output... /bin/sed 2021-05-17T15:55:17.4958596Z [15:55:17] checking for grep that handles long lines and -e... /bin/grep 2021-05-17T15:55:17.4972257Z [15:55:17] checking for egrep... /bin/grep -E 2021-05-17T15:55:17.4986351Z [15:55:17] checking for fgrep... /bin/grep -F 2021-05-17T15:55:17.5222132Z [15:55:17] checking for ld used by cc... /opt/x86_64-w64-mingw32/x86_64-w64-mingw32/bin/ld 2021-05-17T15:55:17.5242129Z [15:55:17] checking if the linker (/opt/x86_64-w64-mingw32/x86_64-w64-mingw32/bin/ld) is GNU ld... yes 2021-05-17T15:55:17.5282664Z [15:55:17] checking for BSD- or MS-compatible name lister (nm)... /opt/bin/x86_64-w64-mingw32-libgfortran3-cxx03/x86_64-w64-mingw32-nm -B 2021-05-17T15:55:17.5786287Z [15:55:17] checking the name lister (/opt/bin/x86_64-w64-mingw32-libgfortran3-cxx03/x86_64-w64-mingw32-nm -B) interface... BSD nm 2021-05-17T15:55:17.5787280Z [15:55:17] checking whether ln -s works... yes 2021-05-17T15:55:17.5815421Z [15:55:17] checking the maximum length of command line arguments... 98304 2021-05-17T15:55:17.5838428Z [15:55:17] checking how to convert x86_64-pc-linux-musl file names to x86_64-w64-mingw32 format... func_convert_file_nix_to_w32 2021-05-17T15:55:17.5840093Z [15:55:17] checking how to convert x86_64-pc-linux-musl file names to toolchain format... func_convert_file_noop 2021-05-17T15:55:17.5841643Z [15:55:17] checking for /opt/x86_64-w64-mingw32/x86_64-w64-mingw32/bin/ld option to reload object files... -r 2021-05-17T15:55:17.5842993Z [15:55:17] checking for x86_64-w64-mingw32-objdump... x86_64-w64-mingw32-objdump 2021-05-17T15:55:17.5857878Z [15:55:17] checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL 2021-05-17T15:55:17.5861655Z [15:55:17] checking for x86_64-w64-mingw32-dlltool... x86_64-w64-mingw32-dlltool 2021-05-17T15:55:17.5920574Z [15:55:17] checking how to associate runtime and link libraries... func_cygming_dll_for_implib 2021-05-17T15:55:17.5922303Z [15:55:17] checking for x86_64-w64-mingw32-ar... x86_64-w64-mingw32-ar 2021-05-17T15:55:17.6481223Z [15:55:17] checking for archiver @FILE support... @ 2021-05-17T15:55:17.6482446Z [15:55:17] checking for x86_64-w64-mingw32-strip... (cached) x86_64-w64-mingw32-strip 2021-05-17T15:55:17.6483639Z [15:55:17] checking for x86_64-w64-mingw32-ranlib... x86_64-w64-mingw32-ranlib 2021-05-17T15:55:17.7567826Z [15:55:17] checking command to parse /opt/bin/x86_64-w64-mingw32-libgfortran3-cxx03/x86_64-w64-mingw32-nm -B output from cc object... ok 2021-05-17T15:55:17.7603525Z [15:55:17] checking for sysroot... no 2021-05-17T15:55:17.7653306Z [15:55:17] checking for a working dd... /bin/dd 2021-05-17T15:55:17.7689098Z [15:55:17] checking how to truncate binary pipes... /bin/dd bs=4096 count=1 2021-05-17T15:55:17.7694213Z [15:55:17] checking for x86_64-w64-mingw32-mt... no 2021-05-17T15:55:17.7699988Z [15:55:17] checking for mt... no 2021-05-17T15:55:17.7724773Z [15:55:17] checking if : is a manifest tool... no 2021-05-17T15:55:17.8082716Z [15:55:17] checking how to run the C preprocessor... cc -E 2021-05-17T15:55:17.9393130Z [15:55:17] checking for ANSI C header files... yes 2021-05-17T15:55:18.0040594Z [15:55:18] checking for sys/types.h... yes 2021-05-17T15:55:18.0794155Z [15:55:18] checking for sys/stat.h... yes 2021-05-17T15:55:18.1529744Z [15:55:18] checking for stdlib.h... yes 2021-05-17T15:55:18.2227702Z [15:55:18] checking for string.h... yes 2021-05-17T15:55:18.2975746Z [15:55:18] checking for memory.h... yes 2021-05-17T15:55:18.3718132Z [15:55:18] checking for strings.h... yes 2021-05-17T15:55:18.4434838Z [15:55:18] checking for inttypes.h... yes 2021-05-17T15:55:18.5149038Z [15:55:18] checking for stdint.h... yes 2021-05-17T15:55:18.5942053Z [15:55:18] checking for unistd.h... yes 2021-05-17T15:55:18.6620654Z [15:55:18] checking for dlfcn.h... no 2021-05-17T15:55:18.6648112Z [15:55:18] checking for objdir... .libs 2021-05-17T15:55:18.8058544Z [15:55:18] checking if cc supports -fno-rtti -fno-exceptions... no 2021-05-17T15:55:18.8059856Z [15:55:18] checking for cc option to produce PIC... -DDLL_EXPORT -DPIC 2021-05-17T15:55:18.8520623Z [15:55:18] checking if cc PIC flag -DDLL_EXPORT -DPIC works... yes 2021-05-17T15:55:18.8921963Z [15:55:18] checking if cc static flag -static works... no 2021-05-17T15:55:18.9445188Z [15:55:18] checking if cc supports -c -o file.o... yes 2021-05-17T15:55:18.9446473Z [15:55:18] checking if cc supports -c -o file.o... (cached) yes 2021-05-17T15:55:18.9526677Z [15:55:18] checking whether the cc linker (/opt/x86_64-w64-mingw32/x86_64-w64-mingw32/bin/ld) supports shared libraries... yes 2021-05-17T15:55:18.9986102Z [15:55:18] checking whether -lc should be explicitly linked in... yes 2021-05-17T15:55:19.0200566Z [15:55:19] checking dynamic linker characteristics... Win32 ld.exe 2021-05-17T15:55:19.0201704Z [15:55:19] checking how to hardcode library paths into programs... immediate 2021-05-17T15:55:19.0243076Z [15:55:19] checking whether stripping libraries is possible... yes 2021-05-17T15:55:19.0243575Z [15:55:19] checking if libtool supports shared libraries... yes 2021-05-17T15:55:19.0244060Z [15:55:19] checking whether to build shared libraries... yes 2021-05-17T15:55:19.0244515Z [15:55:19] checking whether to build static libraries... no 2021-05-17T15:55:19.0611926Z [15:55:19] checking how to run the C++ preprocessor... c++ -E 2021-05-17T15:55:19.2393023Z [15:55:19] checking for ld used by c++... /opt/x86_64-w64-mingw32/x86_64-w64-mingw32/bin/ld 2021-05-17T15:55:19.2407209Z [15:55:19] checking if the linker (/opt/x86_64-w64-mingw32/x86_64-w64-mingw32/bin/ld) is GNU ld... yes 2021-05-17T15:55:19.2547716Z [15:55:19] checking whether the c++ linker (/opt/x86_64-w64-mingw32/x86_64-w64-mingw32/bin/ld) supports shared libraries... yes 2021-05-17T15:55:19.3584163Z [15:55:19] checking for c++ option to produce PIC... -DDLL_EXPORT -DPIC 2021-05-17T15:55:19.4067422Z [15:55:19] checking if c++ PIC flag -DDLL_EXPORT -DPIC works... yes 2021-05-17T15:55:19.4469113Z [15:55:19] checking if c++ static flag -static works... no 2021-05-17T15:55:19.4997446Z [15:55:19] checking if c++ supports -c -o file.o... yes 2021-05-17T15:55:19.4998476Z [15:55:19] checking if c++ supports -c -o file.o... (cached) yes 2021-05-17T15:55:19.4999623Z [15:55:19] checking whether the c++ linker (/opt/x86_64-w64-mingw32/x86_64-w64-mingw32/bin/ld) supports shared libraries... yes 2021-05-17T15:55:19.5000636Z [15:55:19] checking dynamic linker characteristics... Win32 ld.exe 2021-05-17T15:55:19.5001543Z [15:55:19] checking how to hardcode library paths into programs... immediate 2021-05-17T15:55:19.5002371Z [15:55:19] configure: finding other utilities 2021-05-17T15:55:19.5004749Z [15:55:19] checking for m4... m4 2021-05-17T15:55:19.5009501Z [15:55:19] checking for doxygen... no 2021-05-17T15:55:19.5010494Z [15:55:19] configure: WARNING: Doxygen not found - documentation will not be built 2021-05-17T15:55:19.5013999Z [15:55:19] checking for dot... no 2021-05-17T15:55:19.5016446Z [15:55:19] configure: WARNING: dot not found - will use simple charts in documentation 2021-05-17T15:55:19.5022316Z [15:55:19] checking for special C compiler options needed for large files... no 2021-05-17T15:55:19.5902928Z [15:55:19] checking for _FILE_OFFSET_BITS value needed for large files... 64 2021-05-17T15:55:19.5922227Z [15:55:19] configure: displaying some results 2021-05-17T15:55:19.5923835Z [15:55:19] checking CPPFLAGS... -I/workspace/destdir/include -DH5_USE_110_API 2021-05-17T15:55:19.5925269Z [15:55:19] checking CC CFLAGS... cc 2021-05-17T15:55:19.5927020Z [15:55:19] checking type cc... cc is /opt/bin/x86_64-w64-mingw32-libgfortran3-cxx03/cc 2021-05-17T15:55:19.5928559Z [15:55:19] checking CXX... c++ 2021-05-17T15:55:19.5929768Z [15:55:19] checking CXXFLAGS... -g -O2 2021-05-17T15:55:19.5933631Z [15:55:19] checking type c++... c++ is /opt/bin/x86_64-w64-mingw32-libgfortran3-cxx03/c++ 2021-05-17T15:55:19.5935273Z [15:55:19] checking FC... gfortran 2021-05-17T15:55:19.5936454Z [15:55:19] checking FFLAGS... 2021-05-17T15:55:19.5941712Z [15:55:19] checking type gfortran... gfortran is /opt/bin/x86_64-w64-mingw32-libgfortran3-cxx03/gfortran 2021-05-17T15:55:19.5943767Z [15:55:19] checking F90... unset 2021-05-17T15:55:19.5945077Z [15:55:19] checking AR... x86_64-w64-mingw32-ar 2021-05-17T15:55:19.5946380Z [15:55:19] checking AR_FLAGS... cr 2021-05-17T15:55:19.5948635Z [15:55:19] checking type x86_64-w64-mingw32-ar... x86_64-w64-mingw32-ar is /opt/bin/x86_64-w64-mingw32-libgfortran3-cxx03/x86_64-w64-mingw32-ar 2021-05-17T15:55:19.5950952Z [15:55:19] checking NM... /opt/bin/x86_64-w64-mingw32-libgfortran3-cxx03/x86_64-w64-mingw32-nm -B 2021-05-17T15:55:19.5952527Z [15:55:19] checking NMFLAGS... 2021-05-17T15:55:19.5953952Z [15:55:19] configure: checking types, headers, and functions 2021-05-17T15:55:19.6673799Z [15:55:19] checking sys/param.h usability... yes 2021-05-17T15:55:19.6848035Z [15:55:19] checking sys/param.h presence... yes 2021-05-17T15:55:19.6852307Z [15:55:19] checking for sys/param.h... yes 2021-05-17T15:55:19.7605672Z [15:55:19] checking libgen.h usability... yes 2021-05-17T15:55:19.7757467Z [15:55:19] checking libgen.h presence... yes 2021-05-17T15:55:19.7758517Z [15:55:19] checking for libgen.h... yes 2021-05-17T15:55:19.7768714Z [15:55:19] checking for ANSI C header files... (cached) yes 2021-05-17T15:55:19.8513064Z [15:55:19] checking locale.h usability... yes 2021-05-17T15:55:19.8688214Z [15:55:19] checking locale.h presence... yes 2021-05-17T15:55:19.8688662Z [15:55:19] checking for locale.h... yes 2021-05-17T15:55:19.9457124Z [15:55:19] checking stdio.h usability... yes 2021-05-17T15:55:19.9668729Z [15:55:19] checking stdio.h presence... yes 2021-05-17T15:55:19.9669820Z [15:55:19] checking for stdio.h... yes 2021-05-17T15:55:20.0406537Z [15:55:20] checking stdarg.h usability... yes 2021-05-17T15:55:20.0567743Z [15:55:20] checking stdarg.h presence... yes 2021-05-17T15:55:20.0568816Z [15:55:20] checking for stdarg.h... yes 2021-05-17T15:55:20.1319320Z [15:55:20] checking fcntl.h usability... yes 2021-05-17T15:55:20.1513883Z [15:55:20] checking fcntl.h presence... yes 2021-05-17T15:55:20.1514873Z [15:55:20] checking for fcntl.h... yes 2021-05-17T15:55:20.2269715Z [15:55:20] checking malloc.h usability... yes 2021-05-17T15:55:20.2441240Z [15:55:20] checking malloc.h presence... yes 2021-05-17T15:55:20.2442215Z [15:55:20] checking for malloc.h... yes 2021-05-17T15:55:20.2488115Z [15:55:20] checking for stdlib.h... (cached) yes 2021-05-17T15:55:20.2533272Z [15:55:20] checking for string.h... (cached) yes 2021-05-17T15:55:20.2575323Z [15:55:20] checking for strings.h... (cached) yes 2021-05-17T15:55:20.2622403Z [15:55:20] checking for unistd.h... (cached) yes 2021-05-17T15:55:20.2661057Z [15:55:20] checking for sys/stat.h... (cached) yes 2021-05-17T15:55:20.3429661Z [15:55:20] checking getopt.h usability... yes 2021-05-17T15:55:20.3573661Z [15:55:20] checking getopt.h presence... yes 2021-05-17T15:55:20.3574625Z [15:55:20] checking for getopt.h... yes 2021-05-17T15:55:20.4349514Z [15:55:20] checking sys/time.h usability... yes 2021-05-17T15:55:20.4523126Z [15:55:20] checking sys/time.h presence... yes 2021-05-17T15:55:20.4524191Z [15:55:20] checking for sys/time.h... yes 2021-05-17T15:55:20.4570068Z [15:55:20] checking for sys/types.h... (cached) yes 2021-05-17T15:55:20.5312989Z [15:55:20] checking time.h usability... yes 2021-05-17T15:55:20.5496276Z [15:55:20] checking time.h presence... yes 2021-05-17T15:55:20.5497244Z [15:55:20] checking for time.h... yes 2021-05-17T15:55:20.6254226Z [15:55:20] checking dirent.h usability... yes 2021-05-17T15:55:20.6452551Z [15:55:20] checking dirent.h presence... yes 2021-05-17T15:55:20.6453522Z [15:55:20] checking for dirent.h... yes 2021-05-17T15:55:20.7150913Z [15:55:20] checking sys/resource.h usability... no 2021-05-17T15:55:20.7330281Z [15:55:20] checking sys/resource.h presence... no 2021-05-17T15:55:20.7331433Z [15:55:20] checking for sys/resource.h... no 2021-05-17T15:55:20.8076243Z [15:55:20] checking ftw.h usability... yes 2021-05-17T15:55:20.8284253Z [15:55:20] checking ftw.h presence... yes 2021-05-17T15:55:20.8285214Z [15:55:20] checking for ftw.h... yes 2021-05-17T15:55:20.8967494Z [15:55:20] checking execinfo.h usability... no 2021-05-17T15:55:20.9148574Z [15:55:20] checking execinfo.h presence... no 2021-05-17T15:55:20.9149652Z [15:55:20] checking for execinfo.h... no 2021-05-17T15:55:20.9833279Z [15:55:20] checking for strlcat... no 2021-05-17T15:55:21.0518501Z [15:55:21] checking for snprintf... yes 2021-05-17T15:55:21.1240556Z [15:55:21] checking for strcasecmp... yes 2021-05-17T15:55:21.1925826Z [15:55:21] checking for fileno... yes 2021-05-17T15:55:21.2649677Z [15:55:21] checking for strdup... yes 2021-05-17T15:55:21.3308582Z [15:55:21] checking for strtoll... yes 2021-05-17T15:55:21.4002745Z [15:55:21] checking for strtoull... yes 2021-05-17T15:55:21.4665424Z [15:55:21] checking for mkstemp... yes 2021-05-17T15:55:21.5330290Z [15:55:21] checking for mktemp... yes 2021-05-17T15:55:21.6065696Z [15:55:21] checking for random... no 2021-05-17T15:55:21.6694880Z [15:55:21] checking for getrlimit... no 2021-05-17T15:55:21.7342113Z [15:55:21] checking for gettimeofday... yes 2021-05-17T15:55:21.8054658Z [15:55:21] checking for fsync... no 2021-05-17T15:55:21.8741626Z [15:55:21] checking for MPI_Comm_f2c... no 2021-05-17T15:55:21.9389613Z [15:55:21] checking for MPI_Info_f2c... no 2021-05-17T15:55:22.0097180Z [15:55:22] checking for strncasecmp... yes 2021-05-17T15:55:22.0715671Z [15:55:22] checking for clock_gettime... yes 2021-05-17T15:55:22.2187111Z [15:55:22] checking for struct timespec... yes 2021-05-17T15:55:22.2861103Z [15:55:22] checking for memmove... yes 2021-05-17T15:55:22.3526146Z [15:55:22] checking for getpagesize... yes 2021-05-17T15:55:22.4255787Z [15:55:22] checking for sysconf... no 2021-05-17T15:55:22.4256981Z [15:55:22] checking whether mmap is enabled for in-memory files... no 2021-05-17T15:55:22.4887985Z [15:55:22] checking for mmap... no 2021-05-17T15:55:22.5546814Z [15:55:22] checking for mremap... no 2021-05-17T15:55:22.5968863Z [15:55:22] checking whether MAP_ANONYMOUS is defined... no 2021-05-17T15:55:22.5969996Z [15:55:22] mmap functionality is not available: disabling mmap 2021-05-17T15:55:22.5971137Z [15:55:22] checking whether byte range support is enabled... no 2021-05-17T15:55:22.7437619Z [15:55:22] checking for size_t... yes 2021-05-17T15:55:22.7697688Z [15:55:22] checking for working alloca.h... no 2021-05-17T15:55:22.8304186Z [15:55:22] checking for alloca... yes 2021-05-17T15:55:22.8866567Z [15:55:22] checking whether isnan is declared... yes 2021-05-17T15:55:22.9435849Z [15:55:22] checking whether isinf is declared... yes 2021-05-17T15:55:22.9979979Z [15:55:22] checking whether isfinite is declared... yes 2021-05-17T15:55:23.1362842Z [15:55:23] checking for struct stat.st_blksize... no 2021-05-17T15:55:23.1364079Z [15:55:23] checking for IEEE floating point format... 2021-05-17T15:55:23.1365041Z [15:55:23] checking for size_t... (cached) yes 2021-05-17T15:55:23.2826348Z [15:55:23] checking for ssize_t... yes 2021-05-17T15:55:23.3488436Z [15:55:23] checking for schar... no 2021-05-17T15:55:23.4129365Z [15:55:23] checking for uchar... no 2021-05-17T15:55:23.4855767Z [15:55:23] checking for longlong... no 2021-05-17T15:55:23.5518477Z [15:55:23] checking for ushort... no 2021-05-17T15:55:23.6258827Z [15:55:23] checking for uint... no 2021-05-17T15:55:23.6989620Z [15:55:23] checking for int64... no 2021-05-17T15:55:23.7722095Z [15:55:23] checking for uint64... no 2021-05-17T15:55:23.8412591Z [15:55:23] checking for size64_t... no 2021-05-17T15:55:23.9095114Z [15:55:23] checking for ssize64_t... no 2021-05-17T15:55:24.0222836Z [15:55:24] checking for _off64_t... yes 2021-05-17T15:55:24.1685254Z [15:55:24] checking for uint64_t... yes 2021-05-17T15:55:24.3068956Z [15:55:24] checking for off_t... yes 2021-05-17T15:55:24.4506732Z [15:55:24] checking for uintptr_t... yes 2021-05-17T15:55:24.5256600Z [15:55:24] checking whether char is unsigned... no 2021-05-17T15:55:24.6636849Z [15:55:24] checking whether byte ordering is bigendian... no 2021-05-17T15:55:25.0224371Z [15:55:25] checking size of short... 2 2021-05-17T15:55:25.5094592Z [15:55:25] checking size of int... 4 2021-05-17T15:55:26.0035771Z [15:55:26] checking size of long... 4 2021-05-17T15:55:26.6293895Z [15:55:26] checking size of long long... 8 2021-05-17T15:55:27.1296344Z [15:55:27] checking size of float... 4 2021-05-17T15:55:27.7795895Z [15:55:27] checking size of double... 8 2021-05-17T15:55:28.4127860Z [15:55:28] checking size of off_t... 8 2021-05-17T15:55:29.0573890Z [15:55:29] checking size of size_t... 8 2021-05-17T15:55:29.7038878Z [15:55:29] checking size of unsigned long long... 8 2021-05-17T15:55:29.9129064Z [15:55:29] checking size of unsigned char... 1 2021-05-17T15:55:30.2655697Z [15:55:30] checking size of unsigned short int... 2 2021-05-17T15:55:30.7648808Z [15:55:30] checking size of unsigned int... 4 2021-05-17T15:55:30.7660667Z [15:55:30] checking size of unsigned short int... (cached) 2 2021-05-17T15:55:30.7675422Z [15:55:30] checking size of unsigned int... (cached) 4 2021-05-17T15:55:31.3986074Z [15:55:31] checking size of ssize_t... 8 2021-05-17T15:55:32.0460543Z [15:55:32] checking size of void*... 8 2021-05-17T15:55:32.1050803Z [15:55:32] checking for library containing deflate... none required 2021-05-17T15:55:32.2858439Z [15:55:32] checking for library containing dlopen... no 2021-05-17T15:55:32.3490545Z [15:55:32] checking for floor in -lm... yes 2021-05-17T15:55:32.4117663Z [15:55:32] checking for library containing H5Fflush... none required 2021-05-17T15:55:32.4722013Z [15:55:32] checking for library containing H5DSis_scale... none required 2021-05-17T15:55:32.5547112Z [15:55:32] checking hdf5.h usability... yes 2021-05-17T15:55:32.5841642Z [15:55:32] checking hdf5.h presence... yes 2021-05-17T15:55:32.5842731Z [15:55:32] checking for hdf5.h... yes 2021-05-17T15:55:32.7104386Z [15:55:32] checking for H5Pget_fapl_mpio... no 2021-05-17T15:55:32.7772147Z [15:55:32] checking for H5Pset_deflate... yes 2021-05-17T15:55:32.8430526Z [15:55:32] checking for H5Z_SZIP... yes 2021-05-17T15:55:32.9104930Z [15:55:32] checking for H5free_memory... yes 2021-05-17T15:55:32.9748593Z [15:55:32] checking for H5resize_memory... yes 2021-05-17T15:55:33.0411080Z [15:55:33] checking for H5allocate_memory... yes 2021-05-17T15:55:33.1088596Z [15:55:33] checking for H5Pset_all_coll_metadata_ops... no 2021-05-17T15:55:33.1763984Z [15:55:33] checking for H5Literate... no 2021-05-17T15:55:33.2323560Z [15:55:33] checking for H5Literate macro... yes 2021-05-17T15:55:33.2324706Z [15:55:33] checking whether parallel io is enabled in hdf5... no 2021-05-17T15:55:33.2948148Z [15:55:33] checking for library containing H5Dread_chunk... none required 2021-05-17T15:55:33.4707443Z [15:55:33] checking for library containing H5Pset_fapl_ros3... no 2021-05-17T15:55:33.4708634Z [15:55:33] checking whether HDF5 allows parallel filters... yes 2021-05-17T15:55:33.4709743Z [15:55:33] checking whether szlib was used when building HDF5... yes 2021-05-17T15:55:33.5253249Z [15:55:33] checking whether HDF5 library is version 1.10.6 or later... yes 2021-05-17T15:55:33.5258892Z [15:55:33] configure: WARNING: Parallel io disabled for netcdf-4 because hdf5 does not support 2021-05-17T15:55:33.5260209Z [15:55:33] checking whether parallel I/O is enabled for netcdf-4... no 2021-05-17T15:55:33.5909158Z [15:55:33] checking for unsigned long long int... yes 2021-05-17T15:55:33.5910271Z [15:55:33] checking for long long int... yes 2021-05-17T15:55:33.5911260Z [15:55:33] checking for unsigned long long int... (cached) yes 2021-05-17T15:55:33.5912503Z [15:55:33] checking what to call the output of the ftpbin target... binary-netcdf-4.8.0.tar gfortran c++ 2021-05-17T15:55:33.5943216Z [15:55:33] checking if libtool needs -no-undefined flag to build shared libraries... no 2021-05-17T15:55:33.5944636Z [15:55:33] checking value of LIBS... -lm -lhdf5-0 -lhdf5_hl-0 -lcurl-4 -lz 2021-05-17T15:55:33.5945767Z [15:55:33] checking whether filter testing should be run... yes 2021-05-17T15:55:33.5963514Z [15:55:33] configure: generating header files and makefiles 2021-05-17T15:55:33.6411274Z [15:55:33] checking that generated files are newer than configure... done 2021-05-17T15:55:33.6426247Z [15:55:33] configure: creating ./config.status 2021-05-17T15:55:34.1336434Z [15:55:34] config.status: creating test_common.sh 2021-05-17T15:55:34.1451191Z [15:55:34] config.status: creating nczarr_test/timer_utils.h 2021-05-17T15:55:34.1579535Z [15:55:34] config.status: creating nczarr_test/timer_utils.c 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[15:55:34] config.status: creating Makefile 2021-05-17T15:55:34.3480891Z [15:55:34] config.status: creating netcdf.pc 2021-05-17T15:55:34.3585862Z [15:55:34] config.status: creating libnetcdf.settings 2021-05-17T15:55:34.3701195Z [15:55:34] config.status: creating postinstall.sh 2021-05-17T15:55:34.3823444Z [15:55:34] config.status: creating include/netcdf_meta.h 2021-05-17T15:55:34.3954025Z [15:55:34] config.status: creating include/netcdf_dispatch.h 2021-05-17T15:55:34.4128828Z [15:55:34] config.status: creating include/Makefile 2021-05-17T15:55:34.4331345Z [15:55:34] config.status: creating h5_test/Makefile 2021-05-17T15:55:34.4631484Z [15:55:34] config.status: creating hdf4_test/Makefile 2021-05-17T15:55:34.4863557Z [15:55:34] config.status: creating libsrc/Makefile 2021-05-17T15:55:34.5134667Z [15:55:34] config.status: creating libsrc4/Makefile 2021-05-17T15:55:34.5401316Z [15:55:34] config.status: creating libhdf5/Makefile 2021-05-17T15:55:34.5671944Z [15:55:34] config.status: 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libdispatch/Makefile 2021-05-17T15:55:34.8990815Z [15:55:34] config.status: creating liblib/Makefile 2021-05-17T15:55:34.9221341Z [15:55:34] config.status: creating ncdump/cdl/Makefile 2021-05-17T15:55:34.9408971Z [15:55:34] config.status: creating ncdump/expected/Makefile 2021-05-17T15:55:34.9604637Z [15:55:34] config.status: creating docs/Makefile 2021-05-17T15:55:34.9797454Z [15:55:34] config.status: creating docs/images/Makefile 2021-05-17T15:55:34.9991123Z [15:55:34] config.status: creating unit_test/Makefile 2021-05-17T15:55:35.0243251Z [15:55:35] config.status: creating nctest/Makefile 2021-05-17T15:55:35.0479956Z [15:55:35] config.status: creating nc_test4/Makefile 2021-05-17T15:55:35.0867113Z [15:55:35] config.status: creating nc_perf/Makefile 2021-05-17T15:55:35.1162243Z [15:55:35] config.status: creating nc_test/Makefile 2021-05-17T15:55:35.1485526Z [15:55:35] config.status: creating ncdap_test/Makefile 2021-05-17T15:55:35.1751055Z [15:55:35] config.status: creating ncdap_test/testdata3/Makefile 2021-05-17T15:55:35.1936314Z [15:55:35] config.status: creating ncdap_test/expected3/Makefile 2021-05-17T15:55:35.2122800Z [15:55:35] config.status: creating ncdap_test/expectremote3/Makefile 2021-05-17T15:55:35.2322526Z [15:55:35] config.status: creating dap4_test/Makefile 2021-05-17T15:55:35.2589423Z [15:55:35] config.status: creating plugins/Makefile 2021-05-17T15:55:35.2794888Z [15:55:35] config.status: creating nczarr_test/Makefile 2021-05-17T15:55:35.3051495Z [15:55:35] config.status: creating config.h 2021-05-17T15:55:35.3330800Z [15:55:35] config.status: executing depfiles commands 2021-05-17T15:55:37.7838148Z [15:55:37] config.status: executing libtool commands 2021-05-17T15:55:37.7995308Z [15:55:37] # NetCDF C Configuration Summary 2021-05-17T15:55:37.7996766Z [15:55:37] ============================== 2021-05-17T15:55:37.7997831Z [15:55:37]  2021-05-17T15:55:37.7998874Z [15:55:37] # General 2021-05-17T15:55:37.7999837Z [15:55:37] ------- 2021-05-17T15:55:37.8001417Z [15:55:37] NetCDF Version: 4.8.0 2021-05-17T15:55:37.8002572Z [15:55:37] Dispatch Version: 3 2021-05-17T15:55:37.8003565Z [15:55:37] Configured On: 2021-05-17T15:55:37.8004576Z [15:55:37] Host System: x86_64-w64-mingw32 2021-05-17T15:55:37.8005704Z [15:55:37] Build Directory: /workspace/srcdir/netcdf-c-4.8.0 2021-05-17T15:55:37.8006742Z [15:55:37] Install Prefix: /workspace/destdir 2021-05-17T15:55:37.8007520Z [15:55:37]  2021-05-17T15:55:37.8008323Z [15:55:37] # Compiling Options 2021-05-17T15:55:37.8009097Z [15:55:37] ----------------- 2021-05-17T15:55:37.8010133Z [15:55:37] C Compiler: /opt/bin/x86_64-w64-mingw32-libgfortran3-cxx03/cc 2021-05-17T15:55:37.8011126Z [15:55:37] CFLAGS: 2021-05-17T15:55:37.8012094Z [15:55:37] CPPFLAGS: -I/workspace/destdir/include -DH5_USE_110_API 2021-05-17T15:55:37.8013415Z [15:55:37] LDFLAGS: -L/workspace/destdir/bin 2021-05-17T15:55:37.8014538Z [15:55:37] AM_CFLAGS: 2021-05-17T15:55:37.8015405Z [15:55:37] AM_CPPFLAGS: 2021-05-17T15:55:37.8016425Z [15:55:37] AM_LDFLAGS: 2021-05-17T15:55:37.8017649Z [15:55:37] Shared Library: yes 2021-05-17T15:55:37.8018678Z [15:55:37] Static Library: no 2021-05-17T15:55:37.8019900Z [15:55:37] Extra libraries: -lm -lhdf5-0 -lhdf5_hl-0 -lcurl-4 -lz 2021-05-17T15:55:37.8020727Z [15:55:37]  2021-05-17T15:55:37.8021391Z [15:55:37] # Features 2021-05-17T15:55:37.8022077Z [15:55:37] -------- 2021-05-17T15:55:37.8022839Z [15:55:37] NetCDF-2 API: yes 2021-05-17T15:55:37.8023646Z [15:55:37] HDF4 Support: no 2021-05-17T15:55:37.8024435Z [15:55:37] HDF5 Support: yes 2021-05-17T15:55:37.8025242Z [15:55:37] NetCDF-4 API: yes 2021-05-17T15:55:37.8026290Z [15:55:37] NC-4 Parallel Support: no 2021-05-17T15:55:37.8027118Z [15:55:37] PnetCDF Support: no 2021-05-17T15:55:37.8027934Z [15:55:37] DAP2 Support: yes 2021-05-17T15:55:37.8028780Z [15:55:37] DAP4 Support: yes 2021-05-17T15:55:37.8029601Z [15:55:37] Byte-Range Support: no 2021-05-17T15:55:37.8030647Z [15:55:37] Diskless Support: yes 2021-05-17T15:55:37.8031450Z [15:55:37] MMap Support: no 2021-05-17T15:55:37.8032339Z [15:55:37] JNA Support: no 2021-05-17T15:55:37.8033363Z [15:55:37] CDF5 Support: yes 2021-05-17T15:55:37.8034398Z [15:55:37] ERANGE Fill Support: no 2021-05-17T15:55:37.8035442Z [15:55:37] Relaxed Boundary Check: yes 2021-05-17T15:55:37.8036807Z [15:55:37] SZIP Support: yes 2021-05-17T15:55:37.8037712Z [15:55:37] SZIP Write Support: yes 2021-05-17T15:55:37.8038579Z [15:55:37] Parallel Filters: yes 2021-05-17T15:55:37.8039431Z [15:55:37] NCZarr Support: no 2021-05-17T15:55:37.8040263Z [15:55:37] Multi-Filter Support: yes 2021-05-17T15:55:37.8530856Z [15:55:37]  ---> make LDFLAGS="${LDFLAGS_MAKE}" -j${nproc} 2021-05-17T15:55:37.8600713Z [15:55:37] make all-recursive 2021-05-17T15:55:37.8644721Z [15:55:37] make[1]: Entering directory '/workspace/srcdir/netcdf-c-4.8.0' 2021-05-17T15:55:37.8677968Z [15:55:37] Making all in include 2021-05-17T15:55:37.8703699Z [15:55:37] make[2]: Entering directory 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2021-05-17T15:55:37.9343234Z [15:55:37] libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../oc2 -I/workspace/destdir/include -DH5_USE_110_API -MT libdispatch_la-dgroup.lo -MD -MP -MF .deps/libdispatch_la-dgroup.Tpo -c dgroup.c -DDLL_EXPORT -DPIC -o .libs/libdispatch_la-dgroup.o 2021-05-17T15:55:37.9344717Z [15:55:37] libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../oc2 -I/workspace/destdir/include -DH5_USE_110_API -MT libdispatch_la-dfilter.lo -MD -MP -MF .deps/libdispatch_la-dfilter.Tpo -c dfilter.c -DDLL_EXPORT -DPIC -o .libs/libdispatch_la-dfilter.o 2021-05-17T15:55:37.9350364Z [15:55:37] libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../oc2 -I/workspace/destdir/include -DH5_USE_110_API -MT libdispatch_la-dcompound.lo -MD -MP -MF .deps/libdispatch_la-dcompound.Tpo -c dcompound.c -DDLL_EXPORT -DPIC -o .libs/libdispatch_la-dcompound.o 2021-05-17T15:55:37.9367044Z [15:55:37] libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../oc2 -I/workspace/destdir/include -DH5_USE_110_API -MT libdispatch_la-dnotnc3.lo -MD -MP -MF .deps/libdispatch_la-dnotnc3.Tpo -c dnotnc3.c -DDLL_EXPORT -DPIC -o .libs/libdispatch_la-dnotnc3.o 2021-05-17T15:55:37.9368831Z [15:55:37] libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../oc2 -I/workspace/destdir/include -DH5_USE_110_API -MT libdispatch_la-dcrc64.lo -MD -MP -MF .deps/libdispatch_la-dcrc64.Tpo -c dcrc64.c -DDLL_EXPORT -DPIC -o .libs/libdispatch_la-dcrc64.o 2021-05-17T15:55:37.9370752Z [15:55:37] libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../oc2 -I/workspace/destdir/include -DH5_USE_110_API -MT libdispatch_la-dinfermodel.lo -MD -MP -MF .deps/libdispatch_la-dinfermodel.Tpo -c dinfermodel.c -DDLL_EXPORT -DPIC -o .libs/libdispatch_la-dinfermodel.o 2021-05-17T15:55:37.9372539Z [15:55:37] libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../oc2 -I/workspace/destdir/include -DH5_USE_110_API -MT libdispatch_la-nclog.lo -MD -MP -MF .deps/libdispatch_la-nclog.Tpo -c nclog.c -DDLL_EXPORT -DPIC -o .libs/libdispatch_la-nclog.o 2021-05-17T15:55:37.9383607Z [15:55:37] libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../oc2 -I/workspace/destdir/include -DH5_USE_110_API -MT libdispatch_la-denum.lo -MD -MP -MF .deps/libdispatch_la-denum.Tpo -c denum.c -DDLL_EXPORT -DPIC -o .libs/libdispatch_la-denum.o 2021-05-17T15:55:37.9388715Z [15:55:37] libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../oc2 -I/workspace/destdir/include -DH5_USE_110_API -MT libdispatch_la-dauth.lo -MD -MP -MF .deps/libdispatch_la-dauth.Tpo -c dauth.c -DDLL_EXPORT -DPIC -o .libs/libdispatch_la-dauth.o 2021-05-17T15:55:37.9393975Z [15:55:37] libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../oc2 -I/workspace/destdir/include -DH5_USE_110_API -MT libdispatch_la-utf8proc.lo -MD -MP -MF .deps/libdispatch_la-utf8proc.Tpo -c utf8proc.c -DDLL_EXPORT -DPIC -o .libs/libdispatch_la-utf8proc.o 2021-05-17T15:55:37.9420365Z [15:55:37] libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../oc2 -DDLL_EXPORT -I/workspace/destdir/include -DH5_USE_110_API -MT libnetcdf2_la-dv2i.lo -MD -MP -MF .deps/libnetcdf2_la-dv2i.Tpo -c dv2i.c -DDLL_EXPORT -DPIC -o .libs/libnetcdf2_la-dv2i.o 2021-05-17T15:55:37.9440404Z [15:55:37] libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../oc2 -I/workspace/destdir/include -DH5_USE_110_API -MT libdispatch_la-dtype.lo -MD -MP -MF .deps/libdispatch_la-dtype.Tpo -c dtype.c -DDLL_EXPORT -DPIC -o .libs/libdispatch_la-dtype.o 2021-05-17T15:55:37.9500985Z [15:55:37] mv -f .deps/libdispatch_la-dcrc32.Tpo .deps/libdispatch_la-dcrc32.Plo 2021-05-17T15:55:37.9556744Z [15:55:37] mv -f .deps/libdispatch_la-ddim.Tpo .deps/libdispatch_la-ddim.Plo 2021-05-17T15:55:37.9587218Z [15:55:37] libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../include -I../oc2 -I/workspace/destdir/include -DH5_USE_110_API -MT libdispatch_la-dopaque.lo -MD -MP -MF .deps/libdispatch_la-dopaque.Tpo -c dopaque.c -DDLL_EXPORT -DPIC -o .libs/libdispatch_la-dopaque.o 2021-05-17T15:55:37.9589074Z [15:55:37] mv -f .deps/libdispatch_la-dinternal.Tpo .deps/libdispatch_la-dinternal.Plo 2021-05-17T15:55:37.9600941Z [15:55:37] mv -f .deps/libdispatch_la-dparallel.Tpo .deps/libdispatch_la-dparallel.Plo 2021-05-17T15:55:37.9637939Z [15:55:37] mv -f .deps/libdispatch_la-dattput.Tpo .deps/libdispatch_la-dattput.Plo 2021-05-17T15:55:37.9646023Z [15:55:37] mv -f .deps/libdispatch_la-dutf8.Tpo .deps/libdispatch_la-dutf8.Plo 2021-05-17T15:55:37.9656588Z [15:55:37] mv -f .deps/libdispatch_la-nclog.Tpo .deps/libdispatch_la-nclog.Plo 2021-05-17T15:55:37.9692203Z [15:55:37] mv -f .deps/libdispatch_la-derror.Tpo .deps/libdispatch_la-derror.Plo 2021-05-17T15:55:37.9695231Z [15:55:37] mv -f .deps/libdispatch_la-nclist.Tpo .deps/libdispatch_la-nclist.Plo 2021-05-17T15:55:37.9696723Z [15:55:37] mv -f .deps/libdispatch_la-ncbytes.Tpo .deps/libdispatch_la-ncbytes.Plo 2021-05-17T15:55:37.9698116Z [15:55:37] mv -f .deps/libdispatch_la-datt.Tpo .deps/libdispatch_la-datt.Plo 2021-05-17T15:55:37.9705705Z [15:55:37] mv -f .deps/libdispatch_la-nclistmgr.Tpo .deps/libdispatch_la-nclistmgr.Plo 2021-05-17T15:55:37.9706663Z [15:55:37] mv -f .deps/libdispatch_la-dvlen.Tpo .deps/libdispatch_la-dvlen.Plo 2021-05-17T15:55:37.9783565Z [15:55:37] mv -f .deps/libdispatch_la-doffsets.Tpo .deps/libdispatch_la-doffsets.Plo 2021-05-17T15:55:37.9805094Z [15:55:37] mv -f .deps/libdispatch_la-dnotnc3.Tpo .deps/libdispatch_la-dnotnc3.Plo 2021-05-17T15:55:37.9809909Z [15:55:37] mv -f .deps/libdispatch_la-dopaque.Tpo .deps/libdispatch_la-dopaque.Plo 2021-05-17T15:55:37.9814203Z [15:55:37] mv -f .deps/libdispatch_la-nc.Tpo .deps/libdispatch_la-nc.Plo 2021-05-17T15:55:37.9823014Z [15:55:37] mv -f .deps/libdispatch_la-dgroup.Tpo .deps/libdispatch_la-dgroup.Plo 2021-05-17T15:55:37.9908578Z [15:55:37] mv -f .deps/libdispatch_la-dtype.Tpo .deps/libdispatch_la-dtype.Plo 2021-05-17T15:55:37.9911688Z [15:55:37] mv -f .deps/libdispatch_la-dattinq.Tpo .deps/libdispatch_la-dattinq.Plo 2021-05-17T15:55:38.0126990Z [15:55:38] mv -f .deps/libdispatch_la-dutil.Tpo .deps/libdispatch_la-dutil.Plo 2021-05-17T15:55:38.0135707Z [15:55:38] mv -f .deps/libdispatch_la-dstring.Tpo .deps/libdispatch_la-dstring.Plo 2021-05-17T15:55:38.0142098Z [15:55:38] mv -f .deps/libdispatch_la-ncxcache.Tpo .deps/libdispatch_la-ncxcache.Plo 2021-05-17T15:55:38.0175994Z [15:55:38] mv -f .deps/libdispatch_la-denum.Tpo .deps/libdispatch_la-denum.Plo 2021-05-17T15:55:38.0200675Z [15:55:38] mv -f .deps/libdispatch_la-dattget.Tpo .deps/libdispatch_la-dattget.Plo 2021-05-17T15:55:38.0233294Z [15:55:38] mv -f .deps/libdispatch_la-dcompound.Tpo .deps/libdispatch_la-dcompound.Plo 2021-05-17T15:55:38.0287336Z [15:55:38] In file included from drc.c:21:0: 2021-05-17T15:55:38.0289179Z [15:55:38] ../include/ncpathmgr.h:123:39: warning: ‘struct stat’ declared inside parameter list [enabled by default] 2021-05-17T15:55:38.0290558Z [15:55:38]  EXTERNL int NCstat(char* path, struct stat* buf); 2021-05-17T15:55:38.0291630Z [15:55:38]  ^ 2021-05-17T15:55:38.0293264Z [15:55:38] ../include/ncpathmgr.h:123:39: warning: its scope is only this definition or declaration, which is probably not what you want [enabled by default] 2021-05-17T15:55:38.0312422Z [15:55:38] mv -f .deps/libdispatch_la-dnotnc4.Tpo .deps/libdispatch_la-dnotnc4.Plo 2021-05-17T15:55:38.0324406Z [15:55:38] mv -f .deps/libdispatch_la-drc.Tpo .deps/libdispatch_la-drc.Plo 2021-05-17T15:55:38.0332734Z [15:55:38] mv -f .deps/libdispatch_la-dfilter.Tpo .deps/libdispatch_la-dfilter.Plo 2021-05-17T15:55:38.0336330Z [15:55:38] mv -f .deps/libdispatch_la-dvar.Tpo .deps/libdispatch_la-dvar.Plo 2021-05-17T15:55:38.0348128Z [15:55:38] mv -f .deps/libdispatch_la-dvarinq.Tpo .deps/libdispatch_la-dvarinq.Plo 2021-05-17T15:55:38.0377241Z [15:55:38] mv -f .deps/libdispatch_la-daux.Tpo .deps/libdispatch_la-daux.Plo 2021-05-17T15:55:38.0467434Z [15:55:38] In file included from dauth.c:22:0: 2021-05-17T15:55:38.0469593Z [15:55:38] ../include/ncpathmgr.h:123:39: warning: ‘struct stat’ declared inside parameter list [enabled by default] 2021-05-17T15:55:38.0471383Z [15:55:38]  EXTERNL int NCstat(char* path, struct stat* buf); 2021-05-17T15:55:38.0473330Z [15:55:38]  ^ 2021-05-17T15:55:38.0475094Z [15:55:38] ../include/ncpathmgr.h:123:39: warning: its scope is only this definition or declaration, which is probably not what you want [enabled by default] 2021-05-17T15:55:38.0476563Z [15:55:38] In file included from dinfermodel.c:21:0: 2021-05-17T15:55:38.0478003Z [15:55:38] ../include/ncpathmgr.h:123:39: warning: ‘struct stat’ declared inside parameter list [enabled by default] 2021-05-17T15:55:38.0479312Z [15:55:38]  EXTERNL int NCstat(char* path, struct stat* buf); 2021-05-17T15:55:38.0480375Z [15:55:38]  ^ 2021-05-17T15:55:38.0482219Z [15:55:38] ../include/ncpathmgr.h:123:39: warning: its scope is only this definition or declaration, which is probably not what you want [enabled by default] 2021-05-17T15:55:38.0486081Z [15:55:38] mv -f .deps/libdispatch_la-nctime.Tpo .deps/libdispatch_la-nctime.Plo 2021-05-17T15:55:38.0498547Z [15:55:38] mv -f .deps/libdispatch_la-ncuri.Tpo .deps/libdispatch_la-ncuri.Plo 2021-05-17T15:55:38.0501946Z [15:55:38] mv -f .deps/libdispatch_la-dauth.Tpo .deps/libdispatch_la-dauth.Plo 2021-05-17T15:55:38.0552965Z [15:55:38] mv -f .deps/libdispatch_la-dvarput.Tpo .deps/libdispatch_la-dvarput.Plo 2021-05-17T15:55:38.0554173Z [15:55:38] mv -f .deps/libdispatch_la-dfile.Tpo .deps/libdispatch_la-dfile.Plo 2021-05-17T15:55:38.0556046Z [15:55:38] mv -f .deps/libdispatch_la-dreadonly.Tpo .deps/libdispatch_la-dreadonly.Plo 2021-05-17T15:55:38.0558717Z [15:55:38] mv -f .deps/libdispatch_la-dcrc64.Tpo .deps/libdispatch_la-dcrc64.Plo 2021-05-17T15:55:38.0560700Z [15:55:38] mv -f .deps/libdispatch_la-ncexhash.Tpo .deps/libdispatch_la-ncexhash.Plo 2021-05-17T15:55:38.0589044Z [15:55:38] mv -f .deps/libdispatch_la-nchashmap.Tpo .deps/libdispatch_la-nchashmap.Plo 2021-05-17T15:55:38.0689735Z [15:55:38] mv -f .deps/libdispatch_la-dinfermodel.Tpo .deps/libdispatch_la-dinfermodel.Plo 2021-05-17T15:55:38.0707180Z [15:55:38] mv -f .deps/libdispatch_la-dvarget.Tpo .deps/libdispatch_la-dvarget.Plo 2021-05-17T15:55:38.0721029Z [15:55:38] mv -f .deps/libnetcdf2_la-dv2i.Tpo .deps/libnetcdf2_la-dv2i.Plo 2021-05-17T15:55:38.0731328Z [15:55:38] /bin/sh ../libtool --tag=CC --mode=link cc -L/workspace/destdir/bin -lhdf5-0 -lhdf5_hl-0 -lcurl-4 -lz -no-undefined -o libnetcdf2.la libnetcdf2_la-dv2i.lo -lm -lhdf5-0 -lhdf5_hl-0 -lcurl-4 -lz 2021-05-17T15:55:38.0772935Z [15:55:38] mv -f .deps/libdispatch_la-dcopy.Tpo .deps/libdispatch_la-dcopy.Plo 2021-05-17T15:55:38.1222024Z [15:55:38] libtool: link: x86_64-w64-mingw32-ar cr .libs/libnetcdf2.a .libs/libnetcdf2_la-dv2i.o 2021-05-17T15:55:38.1247908Z [15:55:38] libtool: link: x86_64-w64-mingw32-ranlib .libs/libnetcdf2.a 2021-05-17T15:55:38.1331727Z [15:55:38] libtool: link: ( cd ".libs" && rm -f "libnetcdf2.la" && ln -s "../libnetcdf2.la" "libnetcdf2.la" ) 2021-05-17T15:55:38.3906619Z [15:55:38] dpathmgr.c: In function ‘NCclosedir’: 2021-05-17T15:55:38.3907622Z [15:55:38] dpathmgr.c:359:31: error: ‘path’ undeclared (first use in this function) 2021-05-17T15:55:38.3908452Z [15:55:38]  char* cvtname = NCpathcvt(path); 2021-05-17T15:55:38.3909108Z [15:55:38]  ^ 2021-05-17T15:55:38.3909968Z [15:55:38] dpathmgr.c:359:31: note: each undeclared identifier is reported only once for each function it appears in 2021-05-17T15:55:38.3911224Z [15:55:38] dpathmgr.c:361:5: warning: passing argument 1 of ‘closedir’ from incompatible pointer type [enabled by default] 2021-05-17T15:55:38.3912420Z [15:55:38]  stat = closedir(cvtname); 2021-05-17T15:55:38.3912965Z [15:55:38]  ^ 2021-05-17T15:55:38.3913585Z [15:55:38] In file included from dpathmgr.c:22:0: 2021-05-17T15:55:38.3914580Z [15:55:38] /opt/x86_64-w64-mingw32/x86_64-w64-mingw32/sys-root/include/dirent.h:65:29: note: expected ‘struct DIR *’ but argument is of type ‘char *’ 2021-05-17T15:55:38.3915454Z [15:55:38]  int __cdecl __MINGW_NOTHROW closedir (DIR*); 2021-05-17T15:55:38.3916099Z [15:55:38]  ^ 2021-05-17T15:55:38.3916730Z [15:55:38] dpathmgr.c: In function ‘NCstat’: 2021-05-17T15:55:38.3917783Z [15:55:38] dpathmgr.c:473:5: warning: passing argument 2 of ‘_wstat64i32’ from incompatible pointer type [enabled by default] 2021-05-17T15:55:38.3918687Z [15:55:38]  if(_wstat(wpath,buf) < 0) {status = errno; goto done;} 2021-05-17T15:55:38.3919381Z [15:55:38]  ^ 2021-05-17T15:55:38.3920002Z [15:55:38] In file included from dpathmgr.c:16:0: 2021-05-17T15:55:38.3921054Z [15:55:38] /opt/x86_64-w64-mingw32/x86_64-w64-mingw32/sys-root/include/sys/stat.h:128:15: note: expected ‘struct _stat64i32 *’ but argument is of type ‘struct _stat64 *’ 2021-05-17T15:55:38.3922054Z [15:55:38]  int __cdecl _wstat64i32(const wchar_t *_Name,struct _stat64i32 *_Stat); 2021-05-17T15:55:38.3922725Z [15:55:38]  ^ 2021-05-17T15:55:38.4141331Z [15:55:38] make[2]: *** [Makefile:861: libdispatch_la-dpathmgr.lo] Error 1 2021-05-17T15:55:38.4142918Z [15:55:38] make[2]: *** Waiting for unfinished jobs.... 2021-05-17T15:55:38.4302020Z [15:55:38] In file included from ddispatch.c:13:0: 2021-05-17T15:55:38.4303805Z [15:55:38] ../include/ncpathmgr.h:123:39: warning: ‘struct stat’ declared inside parameter list [enabled by default] 2021-05-17T15:55:38.4305158Z [15:55:38]  EXTERNL int NCstat(char* path, struct stat* buf); 2021-05-17T15:55:38.4306216Z [15:55:38]  ^ 2021-05-17T15:55:38.4307798Z [15:55:38] ../include/ncpathmgr.h:123:39: warning: its scope is only this definition or declaration, which is probably not what you want [enabled by default] 2021-05-17T15:55:38.4309313Z [15:55:38] mv -f .deps/libdispatch_la-utf8proc.Tpo .deps/libdispatch_la-utf8proc.Plo 2021-05-17T15:55:38.4345002Z [15:55:38] mv -f .deps/libdispatch_la-ddispatch.Tpo .deps/libdispatch_la-ddispatch.Plo 2021-05-17T15:55:38.4355528Z [15:55:38] make[2]: Leaving directory '/workspace/srcdir/netcdf-c-4.8.0/libdispatch' 2021-05-17T15:55:38.4359310Z [15:55:38] make[1]: *** [Makefile:725: all-recursive] Error 1 2021-05-17T15:55:38.4360753Z [15:55:38] make[1]: Leaving directory '/workspace/srcdir/netcdf-c-4.8.0' 2021-05-17T15:55:38.4361863Z [15:55:38] make: *** [Makefile:570: all] Error 2 2021-05-17T15:55:38.4366157Z [15:55:38]  ---> make LDFLAGS="${LDFLAGS_MAKE}" -j${nproc} 2021-05-17T15:55:38.4367898Z [15:55:38] Previous command exited with 2 2021-05-17T15:55:38.5152091Z [15:55:38] Child Process exited, exit code 2 2021-05-17T15:55:39.1804982Z ERROR: LoadError: Build for NetCDF on x86_64-w64-mingw32 did not complete successfully 2021-05-17T15:55:39.1805565Z 2021-05-17T15:55:39.1805844Z Stacktrace: 2021-05-17T15:55:39.1806495Z [1] error(s::String) 2021-05-17T15:55:39.1807206Z  @ Base ./error.jl:33 2021-05-17T15:55:39.1885015Z [2] autobuild(dir::AbstractString, src_name::AbstractString, src_version::VersionNumber, sources::Vector{var"#s1227"} where var"#s1227"<:BinaryBuilderBase.AbstractSource, script::AbstractString, platforms::Vector{T} where T, products::Vector{var"#s1226"} where var"#s1226"<:Product, dependencies::Vector{var"#s922"} where var"#s922"<:BinaryBuilderBase.AbstractDependency; verbose::Bool, debug::Bool, skip_audit::Bool, ignore_audit_errors::Bool, autofix::Bool, code_dir::Union{Nothing, String}, require_license::Bool, kwargs::Any) 2021-05-17T15:55:39.1888313Z  @ BinaryBuilder /depot/packages/BinaryBuilder/XvTfG/src/AutoBuild.jl:769 2021-05-17T15:55:39.1890197Z [3] build_tarballs(ARGS::Any, src_name::Any, src_version::Any, sources::Any, script::Any, platforms::Any, products::Any, dependencies::Any; julia_compat::String, kwargs::Any) 2021-05-17T15:55:39.1891825Z  @ BinaryBuilder /depot/packages/BinaryBuilder/XvTfG/src/AutoBuild.jl:282 2021-05-17T15:55:39.1892436Z [4] top-level scope 2021-05-17T15:55:39.1893109Z  @ /agent/_work/1/s/N/NetCDF/NetCDF@julia-1.3/build_tarballs.jl:11 2021-05-17T15:55:39.1893930Z in expression starting at /agent/_work/1/s/N/NetCDF/NetCDF@julia-1.3/build_tarballs.jl:11 2021-05-17T15:55:40.3181335Z ##[error]Bash exited with code '1'. 2021-05-17T15:55:40.3233878Z ##[section]Finishing: run build_tarballs.jl