This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by netCDF configure 4.4.1.1, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ ../configure --prefix=/opt/netcdf-serial/4.4.1.1/gnu-6.3.0 --disable-dap --enable-netcdf-4 --enable-shared --enable-static

## --------- ##
## Platform. ##
## --------- ##

hostname = nicpa-000
uname -m = x86_64
uname -r = 3.16.0-4-amd64
uname -s = Linux
uname -v = #1 SMP Debian 3.16.39-1 (2016-12-30)

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = unknown
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /opt/hdf5-serial/1.10.0/gnu-6.3.0/bin
PATH: /opt/generic/gcc/6.3.0/bin
PATH: /opt/generic/build-tools/1.0/bin
PATH: /opt/texlive/2014/bin/x86_64-linux
PATH: /home/nicpa/.bin
PATH: /opt/texlive/2014/bin/x86_64-linux
PATH: /home/nicpa/.bin
PATH: /opt/texlive/2014/bin/x86_64-linux
PATH: /home/nicpa/.bin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /bin
PATH: /usr/local/games
PATH: /usr/games
PATH: /opt/java/jre/7u17/bin
PATH: /opt/generic/ATK/2014.2/bin
PATH: /opt/generic/ATK/2014.2/license
PATH: /opt/generic/ATK/2014.2/bin
PATH: /opt/generic/ATK/2014.2/license
PATH: /opt/java/jre/7u17/bin
PATH: /opt/generic/ATK/2014.2/bin
PATH: /opt/generic/ATK/2014.2/license
PATH: /opt/java/jre/7u17/bin
PATH: /opt/generic/ATK/2014.2/bin
PATH: /opt/generic/ATK/2014.2/license


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2870: netCDF 4.4.1.1
configure:2917: checking build system type
configure:2931: result: x86_64-unknown-linux-gnu
configure:2951: checking host system type
configure:2964: result: x86_64-unknown-linux-gnu
configure:2986: checking target system type
configure:2999: result: x86_64-unknown-linux-gnu
configure:3061: checking for a BSD-compatible install
configure:3129: result: /usr/bin/install -c
configure:3140: checking whether build environment is sane
configure:3195: result: yes
configure:3346: checking for a thread-safe mkdir -p
configure:3385: result: /bin/mkdir -p
configure:3392: checking for gawk
configure:3422: result: no
configure:3392: checking for mawk
configure:3408: found /usr/bin/mawk
configure:3419: result: mawk
configure:3430: checking whether make sets $(MAKE)
configure:3452: result: yes
configure:3481: checking whether make supports nested variables
configure:3498: result: yes
configure:3625: checking whether to enable maintainer-specific portions of Makefiles
configure:3634: result: no
configure:3651: checking user options
configure:3656: checking whether a win32 DLL is desired
configure:3664: result: no
configure:3684: checking whether a NCIO_MINBLOCKSIZE was specified
configure:3694: result: 256
configure:3802: checking if fsync support is enabled
configure:3812: result: no
configure:3822: checking if jna bug workaround is enabledd
configure:3832: result: no
configure:3841: checking whether extra valgrind tests should be run
configure:3849: result: no
configure:3853: checking whether we should build netCDF-4
configure:3872: result: yes
configure:3877: checking do we require hdf5 dynamic-loading support
configure:3885: result: yes
configure:3889: checking whether reading of HDF4 SD files is to be enabled
configure:3897: result: no
configure:3901: checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)
configure:3914: result: no
configure:3919: checking whether we should attempt to install netcdf-fortran (EXPERIMENTAL)
configure:3927: result: no
configure:3931: checking whether extra example tests should be run
configure:3939: result: no
configure:3943: checking whether parallel IO tests should be run
configure:3951: result: no
configure:3955: checking whether a default chunk size in bytes was specified
configure:3965: result: 4194304
configure:3974: checking whether a maximum per-variable cache size for HDF5 was specified
configure:3984: result: 67108864
configure:3993: checking whether a number of chunks for the default per-variable cache was specified
configure:4003: result: 10
configure:4012: checking whether a default file cache size for HDF5 was specified
configure:4022: result: 4194304
configure:4031: checking whether a default file cache maximum number of elements for HDF5 was specified
configure:4041: result: 1009
configure:4050: checking whether a default cache preemption for HDF5 was specified
configure:4060: result: 0.75
configure:4069: checking whether netCDF-4 logging is enabled
configure:4077: result: no
configure:4081: checking whether DAP client is to be built
configure:4089: result: no
configure:4115: checking for style of include used by make
configure:4143: result: GNU
configure:4214: checking for gcc
configure:4241: result: gcc
configure:4470: checking for C compiler version
configure:4479: gcc --version >&5
gcc (GCC) 6.3.0
Copyright (C) 2016 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4490: $? = 0
configure:4479: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/opt/generic/gcc/6.3.0/libexec/gcc/x86_64-pc-linux-gnu/6.3.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: ../configure --prefix /opt/generic/gcc/6.3.0 --with-gmp=/opt/generic/gmp/6.1.0 --with-mpfr=/opt/generic/mpfr/3.1.4 --with-mpc=/opt/generic/mpc/1.0.3 --with-isl=/opt/generic/isl/0.16.1 --enable-lto --enable-threads --enable-stage1-languages=c,c++,fortran,objc,obj-c++,go --with-multilib-list=m64
Thread model: posix
gcc version 6.3.0 (GCC) 
configure:4490: $? = 0
configure:4479: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:4490: $? = 1
configure:4479: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?
gcc: fatal error: no input files
compilation terminated.
configure:4490: $? = 1
configure:4510: checking whether the C compiler works
configure:4532: gcc -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:4536: $? = 0
configure:4584: result: yes
configure:4587: checking for C compiler default output file name
configure:4589: result: a.out
configure:4595: checking for suffix of executables
configure:4602: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:4606: $? = 0
configure:4628: result: 
configure:4650: checking whether we are cross compiling
configure:4658: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:4662: $? = 0
configure:4669: ./conftest
configure:4673: $? = 0
configure:4688: result: no
configure:4693: checking for suffix of object files
configure:4715: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:4719: $? = 0
configure:4740: result: o
configure:4744: checking whether we are using the GNU C compiler
configure:4763: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:4763: $? = 0
configure:4772: result: yes
configure:4781: checking whether gcc accepts -g
configure:4801: gcc -c -g  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:4801: $? = 0
configure:4842: result: yes
configure:4859: checking for gcc option to accept ISO C89
configure:4922: gcc  -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:4922: $? = 0
configure:4935: result: none needed
configure:4960: checking whether gcc understands -c and -o together
configure:4982: gcc -c conftest.c -o conftest2.o
configure:4985: $? = 0
configure:4982: gcc -c conftest.c -o conftest2.o
configure:4985: $? = 0
configure:4997: result: yes
configure:5016: checking dependency style of gcc
configure:5127: result: gcc3
configure:5143: checking for curl_easy_setopt in -lcurl
configure:5168: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lcurl   >&5
/opt/generic/build-tools/1.0/bin/ld: cannot find -lcurl
collect2: error: ld returned 1 exit status
configure:5168: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char curl_easy_setopt ();
| int
| main ()
| {
| return curl_easy_setopt ();
|   ;
|   return 0;
| }
configure:5177: result: no
configure:5259: checking whether dap remote testing should be enabled (default on)
configure:5270: result: no
configure:5274: checking whether dap remote authorization testing should be enabled (default off)
configure:5290: result: no
configure:5294: checking whether netcdf4 group names should be enabled (default on)
configure:5303: dap groups disabled because dap disabled or netcdf-4 disabled
configure:5307: result: no
configure:5331: checking whether the time-consuming dap tests should be enabled (default off)
configure:5342: result: no
configure:5355: checking whether netCDF extra tests should be run (developers only)
configure:5363: result: yes
configure:5380: checking whether FFIO will be used
configure:5388: result: no
configure:5405: checking whether STDIO will be used
configure:5413: result: no
configure:5439: checking whether examples should be built
configure:5447: result: yes
configure:5459: checking whether v2 netCDF API should be built
configure:5467: result: yes
configure:5492: checking whether the ncgen/ncdump/nccopy should be built
configure:5501: result: yes
configure:5513: checking whether test should be built and run
configure:5522: result: yes
configure:5534: checking whether large file (> 2GB) tests should be run
configure:5542: result: no
configure:5559: checking whether benchmarks should be run (experimental)
configure:5567: result: no
configure:5579: checking whether extreme numbers should be used in tests
configure:5594: result: yes
configure:5606: checking where to put large temp files if large file tests are run
configure:5615: result: .
configure:5630: finding C compiler
configure:5703: checking for gcc
configure:5730: result: gcc
configure:5959: checking for C compiler version
configure:5968: gcc --version >&5
gcc (GCC) 6.3.0
Copyright (C) 2016 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:5979: $? = 0
configure:5968: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/opt/generic/gcc/6.3.0/libexec/gcc/x86_64-pc-linux-gnu/6.3.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: ../configure --prefix /opt/generic/gcc/6.3.0 --with-gmp=/opt/generic/gmp/6.1.0 --with-mpfr=/opt/generic/mpfr/3.1.4 --with-mpc=/opt/generic/mpc/1.0.3 --with-isl=/opt/generic/isl/0.16.1 --enable-lto --enable-threads --enable-stage1-languages=c,c++,fortran,objc,obj-c++,go --with-multilib-list=m64
Thread model: posix
gcc version 6.3.0 (GCC) 
configure:5979: $? = 0
configure:5968: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:5979: $? = 1
configure:5968: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?
gcc: fatal error: no input files
compilation terminated.
configure:5979: $? = 1
configure:5983: checking whether we are using the GNU C compiler
configure:6011: result: yes
configure:6020: checking whether gcc accepts -g
configure:6081: result: yes
configure:6098: checking for gcc option to accept ISO C89
configure:6174: result: none needed
configure:6199: checking whether gcc understands -c and -o together
configure:6236: result: yes
configure:6255: checking dependency style of gcc
configure:6366: result: gcc3
configure:6382: checking for an ANSI C-conforming const
configure:6448: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:6448: $? = 0
configure:6455: result: yes
configure:6485: gcc -c   -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c:22:23: fatal error: curl/curl.h: No such file or directory
 #include "curl/curl.h"
                       ^
compilation terminated.
configure:6485: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| /* end confdefs.h.  */
| #include "curl/curl.h"
| int
| main ()
| {
| int x = CURLOPT_USERNAME;
|   ;
|   return 0;
| }
configure:6491: checking whether CURLOPT_USERNAME is defined
configure:6493: result: no
configure:6512: gcc -c   -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c:22:23: fatal error: curl/curl.h: No such file or directory
 #include "curl/curl.h"
                       ^
compilation terminated.
configure:6512: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| /* end confdefs.h.  */
| #include "curl/curl.h"
| int
| main ()
| {
| int x = CURLOPT_PASSWORD;
|   ;
|   return 0;
| }
configure:6518: checking whether CURLOPT_PASSWORD is defined
configure:6520: result: no
configure:6539: gcc -c   -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c:22:23: fatal error: curl/curl.h: No such file or directory
 #include "curl/curl.h"
                       ^
compilation terminated.
configure:6539: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| /* end confdefs.h.  */
| #include "curl/curl.h"
| int
| main ()
| {
| int x = CURLOPT_KEYPASSWD;
|   ;
|   return 0;
| }
configure:6545: checking whether CURLOPT_KEYPASSWD is defined
configure:6547: result: no
configure:6566: gcc -c   -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c:22:23: fatal error: curl/curl.h: No such file or directory
 #include "curl/curl.h"
                       ^
compilation terminated.
configure:6566: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| /* end confdefs.h.  */
| #include "curl/curl.h"
| int
| main ()
| {
| int x = CURLINFO_RESPONSE_CODE;
|   ;
|   return 0;
| }
configure:6572: checking whether CURLINFO_RESPONSE_CODE is defined
configure:6574: result: no
configure:6593: gcc -c   -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c:22:23: fatal error: curl/curl.h: No such file or directory
 #include "curl/curl.h"
                       ^
compilation terminated.
configure:6593: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| /* end confdefs.h.  */
| #include "curl/curl.h"
| int
| main ()
| {
| int x = CURLOPT_CHUNK_BGN_FUNCTION;
|   ;
|   return 0;
| }
configure:6599: checking whether CURLOPT_CHUNK_BGN_FUNCTION is defined
configure:6601: result: no
configure:6612: setting up libtool
configure:6661: checking how to print strings
configure:6688: result: printf
configure:6709: checking for a sed that does not truncate output
configure:6773: result: /bin/sed
configure:6791: checking for grep that handles long lines and -e
configure:6849: result: /bin/grep
configure:6854: checking for egrep
configure:6916: result: /bin/grep -E
configure:6921: checking for fgrep
configure:6983: result: /bin/grep -F
configure:7018: checking for ld used by gcc
configure:7085: result: /opt/generic/build-tools/1.0/bin/ld
configure:7092: checking if the linker (/opt/generic/build-tools/1.0/bin/ld) is GNU ld
configure:7107: result: yes
configure:7119: checking for BSD- or MS-compatible name lister (nm)
configure:7173: result: /opt/generic/build-tools/1.0/bin/nm -B
configure:7303: checking the name lister (/opt/generic/build-tools/1.0/bin/nm -B) interface
configure:7310: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:7313: /opt/generic/build-tools/1.0/bin/nm -B "conftest.o"
configure:7316: output
0000000000000000 B some_variable
configure:7323: result: BSD nm
configure:7326: checking whether ln -s works
configure:7330: result: yes
configure:7338: checking the maximum length of command line arguments
configure:7469: result: 3458764513820540925
configure:7517: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format
configure:7557: result: func_convert_file_noop
configure:7564: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format
configure:7584: result: func_convert_file_noop
configure:7591: checking for /opt/generic/build-tools/1.0/bin/ld option to reload object files
configure:7598: result: -r
configure:7672: checking for objdump
configure:7688: found /opt/generic/build-tools/1.0/bin/objdump
configure:7699: result: objdump
configure:7728: checking how to recognize dependent libraries
configure:7928: result: pass_all
configure:8013: checking for dlltool
configure:8043: result: no
configure:8070: checking how to associate runtime and link libraries
configure:8097: result: printf %s\n
configure:8221: checking for archiver @FILE support
configure:8238: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:8238: $? = 0
configure:8241: gcc-ar cru libconftest.a @conftest.lst >&5
configure:8244: $? = 0
configure:8249: gcc-ar cru libconftest.a @conftest.lst >&5
/opt/generic/build-tools/1.0/bin/ar: conftest.o: No such file or directory
configure:8252: $? = 1
configure:8264: result: @
configure:8322: checking for strip
configure:8338: found /opt/generic/build-tools/1.0/bin/strip
configure:8349: result: strip
configure:8421: checking for ranlib
configure:8448: result: gcc-ranlib
configure:8550: checking command to parse /opt/generic/build-tools/1.0/bin/nm -B output from gcc object
configure:8703: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:8706: $? = 0
configure:8710: /opt/generic/build-tools/1.0/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:8713: $? = 0
configure:8779: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c conftstm.o >&5
configure:8782: $? = 0
configure:8820: result: ok
configure:8867: checking for sysroot
configure:8897: result: no
configure:8904: checking for a working dd
configure:8942: result: /bin/dd
configure:8946: checking how to truncate binary pipes
configure:8961: result: /bin/dd bs=4096 count=1
configure:9097: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:9100: $? = 0
configure:9290: checking for mt
configure:9306: found /bin/mt
configure:9317: result: mt
configure:9340: checking if mt is a manifest tool
configure:9346: mt '-?'
configure:9354: result: no
configure:10031: checking how to run the C preprocessor
configure:10062: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
configure:10062: $? = 0
configure:10076: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
conftest.c:22:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:10076: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:10101: result: gcc -E
configure:10121: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
configure:10121: $? = 0
configure:10135: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
conftest.c:22:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:10135: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:10164: checking for ANSI C header files
configure:10184: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:10184: $? = 0
configure:10257: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:10257: $? = 0
configure:10257: ./conftest
configure:10257: $? = 0
configure:10268: result: yes
configure:10281: checking for sys/types.h
configure:10281: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:10281: $? = 0
configure:10281: result: yes
configure:10281: checking for sys/stat.h
configure:10281: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:10281: $? = 0
configure:10281: result: yes
configure:10281: checking for stdlib.h
configure:10281: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:10281: $? = 0
configure:10281: result: yes
configure:10281: checking for string.h
configure:10281: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:10281: $? = 0
configure:10281: result: yes
configure:10281: checking for memory.h
configure:10281: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:10281: $? = 0
configure:10281: result: yes
configure:10281: checking for strings.h
configure:10281: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:10281: $? = 0
configure:10281: result: yes
configure:10281: checking for inttypes.h
configure:10281: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:10281: $? = 0
configure:10281: result: yes
configure:10281: checking for stdint.h
configure:10281: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:10281: $? = 0
configure:10281: result: yes
configure:10281: checking for unistd.h
configure:10281: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:10281: $? = 0
configure:10281: result: yes
configure:10295: checking for dlfcn.h
configure:10295: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:10295: $? = 0
configure:10295: result: yes
configure:10849: checking for objdir
configure:10864: result: .libs
configure:11128: checking if gcc supports -fno-rtti -fno-exceptions
configure:11146: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C
configure:11150: $? = 0
configure:11163: result: no
configure:11521: checking for gcc option to produce PIC
configure:11528: result: -fPIC -DPIC
configure:11536: checking if gcc PIC flag -fPIC -DPIC works
configure:11554: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include -fPIC -DPIC -DPIC conftest.c >&5
configure:11558: $? = 0
configure:11571: result: yes
configure:11600: checking if gcc static flag -static works
configure:11628: result: yes
configure:11643: checking if gcc supports -c -o file.o
configure:11664: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include -o out/conftest2.o conftest.c >&5
configure:11668: $? = 0
configure:11690: result: yes
configure:11698: checking if gcc supports -c -o file.o
configure:11745: result: yes
configure:11778: checking whether the gcc linker (/opt/generic/build-tools/1.0/bin/ld -m elf_x86_64) supports shared libraries
configure:13037: result: yes
configure:13074: checking whether -lc should be explicitly linked in
configure:13082: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:13085: $? = 0
configure:13100: gcc -shared  -fPIC -DPIC conftest.o  -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep  -lc  \>/dev/null 2\>\&1
configure:13103: $? = 0
configure:13117: result: no
configure:13277: checking dynamic linker characteristics
configure:13858: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath -Wl,/foo conftest.c  >&5
configure:13858: $? = 0
configure:14095: result: GNU/Linux ld.so
configure:14217: checking how to hardcode library paths into programs
configure:14242: result: immediate
configure:14790: checking whether stripping libraries is possible
configure:14795: result: yes
configure:14830: checking if libtool supports shared libraries
configure:14832: result: yes
configure:14835: checking whether to build shared libraries
configure:14860: result: yes
configure:14863: checking whether to build static libraries
configure:14867: result: yes
configure:14913: finding other utilities
configure:14921: checking for m4
configure:14937: found /opt/generic/build-tools/1.0/bin/m4
configure:14948: result: m4
configure:14968: checking for doxygen
configure:14998: result: no
configure:15007: WARNING: Doxygen not found - documentation will not be built
configure:15017: checking for dot
configure:15047: result: no
configure:15056: WARNING: dot not found - will use simple charts in documentation
configure:15089: checking for special C compiler options needed for large files
configure:15134: result: no
configure:15140: checking for _FILE_OFFSET_BITS value needed for large files
configure:15165: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15165: $? = 0
configure:15197: result: no
configure:15283: displaying some results
configure:15289: checking CPPFLAGS
configure:15291: result:  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include
configure:15293: checking CC CFLAGS
configure:15295: result: gcc -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib
configure:15298: checking type gcc
configure:15300: result: gcc is /opt/generic/gcc/6.3.0/bin/gcc
configure:15303: checking CXX
configure:15306: result: g++
configure:15308: checking CXXFLAGS
configure:15310: result: -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib
configure:15313: checking type g++
configure:15315: result: g++ is /opt/generic/gcc/6.3.0/bin/g++
configure:15322: checking FC
configure:15325: result: gfortran
configure:15327: checking FFLAGS
configure:15329: result: -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -fno-second-underscore -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib
configure:15332: checking type gfortran
configure:15334: result: gfortran is /opt/generic/gcc/6.3.0/bin/gfortran
configure:15341: checking F90
configure:15344: result: gfortran
configure:15346: checking FCFLAGS
configure:15348: result: -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -fno-second-underscore -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib
configure:15351: checking type gfortran
configure:15353: result: gfortran is /opt/generic/gcc/6.3.0/bin/gfortran
configure:15360: checking AR
configure:15363: result: gcc-ar
configure:15365: checking AR_FLAGS
configure:15367: result: cru
configure:15370: checking type gcc-ar
configure:15372: result: gcc-ar is /opt/generic/gcc/6.3.0/bin/gcc-ar
configure:15379: checking NM
configure:15382: result: /opt/generic/build-tools/1.0/bin/nm -B
configure:15384: checking NMFLAGS
configure:15386: result: 
configure:15401: checking types, headers, and functions
configure:15404: checking for stdlib.h
configure:15404: result: yes
configure:15414: checking for sys/types.h
configure:15414: result: yes
configure:15426: checking sys/param.h usability
configure:15426: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15426: $? = 0
configure:15426: result: yes
configure:15426: checking sys/param.h presence
configure:15426: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
configure:15426: $? = 0
configure:15426: result: yes
configure:15426: checking for sys/param.h
configure:15426: result: yes
configure:15440: checking for dirent.h that defines DIR
configure:15459: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15459: $? = 0
configure:15467: result: yes
configure:15480: checking for library containing opendir
configure:15511: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:15511: $? = 0
configure:15528: result: none required
configure:15595: checking for ANSI C header files
configure:15699: result: yes
configure:15707: checking for sys/wait.h that is POSIX.1 compatible
configure:15733: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15733: $? = 0
configure:15740: result: yes
configure:15748: checking whether time.h and sys/time.h may both be included
configure:15768: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15768: $? = 0
configure:15775: result: yes
configure:15786: checking locale.h usability
configure:15786: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking locale.h presence
configure:15786: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking for locale.h
configure:15786: result: yes
configure:15786: checking stdio.h usability
configure:15786: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking stdio.h presence
configure:15786: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking for stdio.h
configure:15786: result: yes
configure:15786: checking stdarg.h usability
configure:15786: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking stdarg.h presence
configure:15786: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking for stdarg.h
configure:15786: result: yes
configure:15786: checking errno.h usability
configure:15786: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking errno.h presence
configure:15786: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking for errno.h
configure:15786: result: yes
configure:15786: checking ctype.h usability
configure:15786: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking ctype.h presence
configure:15786: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking for ctype.h
configure:15786: result: yes
configure:15786: checking fcntl.h usability
configure:15786: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking fcntl.h presence
configure:15786: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking for fcntl.h
configure:15786: result: yes
configure:15786: checking malloc.h usability
configure:15786: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking malloc.h presence
configure:15786: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking for malloc.h
configure:15786: result: yes
configure:15786: checking for stdlib.h
configure:15786: result: yes
configure:15786: checking for string.h
configure:15786: result: yes
configure:15786: checking for strings.h
configure:15786: result: yes
configure:15786: checking for unistd.h
configure:15786: result: yes
configure:15786: checking for sys/stat.h
configure:15786: result: yes
configure:15786: checking getopt.h usability
configure:15786: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking getopt.h presence
configure:15786: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking for getopt.h
configure:15786: result: yes
configure:15786: checking sys/time.h usability
configure:15786: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking sys/time.h presence
configure:15786: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
configure:15786: $? = 0
configure:15786: result: yes
configure:15786: checking for sys/time.h
configure:15786: result: yes
configure:15798: checking for vprintf
configure:15798: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
conftest.c:76:6: warning: conflicting types for built-in function 'vprintf'
 char vprintf ();
      ^~~~~~~
configure:15798: $? = 0
configure:15798: result: yes
configure:15804: checking for _doprnt
configure:15804: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
/tmp/ccv1atgM.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `_doprnt'
collect2: error: ld returned 1 exit status
configure:15804: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| /* end confdefs.h.  */
| /* Define _doprnt to an innocuous variant, in case <limits.h> declares _doprnt.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define _doprnt innocuous__doprnt
| 
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char _doprnt (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
| 
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| 
| #undef _doprnt
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char _doprnt ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub__doprnt || defined __stub____doprnt
| choke me
| #endif
| 
| int
| main ()
| {
| return _doprnt ();
|   ;
|   return 0;
| }
configure:15804: result: no
configure:15821: checking sys/resource.h usability
configure:15821: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15821: $? = 0
configure:15821: result: yes
configure:15821: checking sys/resource.h presence
configure:15821: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
configure:15821: $? = 0
configure:15821: result: yes
configure:15821: checking for sys/resource.h
configure:15821: result: yes
configure:15834: checking for stdbool.h that conforms to C99
configure:15901: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15901: $? = 0
configure:15908: result: yes
configure:15910: checking for _Bool
configure:15910: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:15910: $? = 0
configure:15910: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:91:20: error: expected expression before ')' token
 if (sizeof ((_Bool)))
                    ^
configure:15910: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((_Bool)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:15910: result: yes
configure:15935: checking for strlcat
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
/tmp/cc0cUr02.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `strlcat'
collect2: error: ld returned 1 exit status
configure:15935: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| /* end confdefs.h.  */
| /* Define strlcat to an innocuous variant, in case <limits.h> declares strlcat.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define strlcat innocuous_strlcat
| 
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char strlcat (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
| 
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| 
| #undef strlcat
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char strlcat ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_strlcat || defined __stub___strlcat
| choke me
| #endif
| 
| int
| main ()
| {
| return strlcat ();
|   ;
|   return 0;
| }
configure:15935: result: no
configure:15935: checking for strerror
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for snprintf
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
conftest.c:81:6: warning: conflicting types for built-in function 'snprintf'
 char snprintf ();
      ^~~~~~~~
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for strchr
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
conftest.c:82:6: warning: conflicting types for built-in function 'strchr'
 char strchr ();
      ^~~~~~
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for strrchr
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
conftest.c:83:6: warning: conflicting types for built-in function 'strrchr'
 char strrchr ();
      ^~~~~~~
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for strcat
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
conftest.c:84:6: warning: conflicting types for built-in function 'strcat'
 char strcat ();
      ^~~~~~
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for strcpy
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
conftest.c:85:6: warning: conflicting types for built-in function 'strcpy'
 char strcpy ();
      ^~~~~~
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for strdup
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
conftest.c:86:6: warning: conflicting types for built-in function 'strdup'
 char strdup ();
      ^~~~~~
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for strcasecmp
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
conftest.c:87:6: warning: conflicting types for built-in function 'strcasecmp'
 char strcasecmp ();
      ^~~~~~~~~~
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for strtod
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for strtoll
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for strtoull
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for strstr
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
conftest.c:91:6: warning: conflicting types for built-in function 'strstr'
 char strstr ();
      ^~~~~~
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for mkstemp
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for rand
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for random
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for memcmp
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
conftest.c:95:6: warning: conflicting types for built-in function 'memcmp'
 char memcmp ();
      ^~~~~~
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for getrlimit
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for gettimeofday
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for fsync
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:15935: $? = 0
configure:15935: result: yes
configure:15935: checking for MPI_Comm_f2c
configure:15935: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
/tmp/cc8IJUPV.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `MPI_Comm_f2c'
collect2: error: ld returned 1 exit status
configure:15935: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| /* end confdefs.h.  */
| /* Define MPI_Comm_f2c to an innocuous variant, in case <limits.h> declares MPI_Comm_f2c.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define MPI_Comm_f2c innocuous_MPI_Comm_f2c
| 
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char MPI_Comm_f2c (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
| 
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| 
| #undef MPI_Comm_f2c
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char MPI_Comm_f2c ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_MPI_Comm_f2c || defined __stub___MPI_Comm_f2c
| choke me
| #endif
| 
| int
| main ()
| {
| return MPI_Comm_f2c ();
|   ;
|   return 0;
| }
configure:15935: result: no
configure:15946: checking whether in-memory files are enabled
configure:15954: result: yes
configure:15969: checking for memmove
configure:15969: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
conftest.c:99:6: warning: conflicting types for built-in function 'memmove'
 char memmove ();
      ^~~~~~~
configure:15969: $? = 0
configure:15969: result: yes
configure:15969: checking for getpagesize
configure:15969: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:15969: $? = 0
configure:15969: result: yes
configure:15969: checking for sysconf
configure:15969: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:15969: $? = 0
configure:15969: result: yes
configure:15980: checking whether mmap is enabled for in-memory files
configure:15988: result: no
configure:15998: checking for stdlib.h
configure:15998: result: yes
configure:15998: checking for unistd.h
configure:15998: result: yes
configure:15998: checking for sys/param.h
configure:15998: result: yes
configure:16018: checking for getpagesize
configure:16018: result: yes
configure:16027: checking for working mmap
configure:16174: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:16174: $? = 0
configure:16174: ./conftest
configure:16174: $? = 0
configure:16184: result: yes
configure:16195: checking for mremap
configure:16195: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:16195: $? = 0
configure:16195: result: yes
configure:16222: checking for size_t
configure:16222: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:16222: $? = 0
configure:16222: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:122:21: error: expected expression before ')' token
 if (sizeof ((size_t)))
                     ^
configure:16222: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((size_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:16222: result: yes
configure:16235: checking for working alloca.h
configure:16252: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:16252: $? = 0
configure:16260: result: yes
configure:16268: checking for alloca
configure:16305: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:16305: $? = 0
configure:16313: result: yes
configure:16419: checking whether isnan is declared
configure:16419: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:16419: $? = 0
configure:16419: result: yes
configure:16430: checking whether isinf is declared
configure:16430: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:16430: $? = 0
configure:16430: result: yes
configure:16441: checking whether isfinite is declared
configure:16441: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:16441: $? = 0
configure:16441: result: yes
configure:16452: checking whether signbit is declared
configure:16452: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:16452: $? = 0
configure:16452: result: yes
configure:16464: checking for struct stat.st_blksize
configure:16464: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:16464: $? = 0
configure:16464: result: yes
configure:16478: checking for IEEE floating point format
configure:16516: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:16516: $? = 0
configure:16516: ./conftest
configure:16516: $? = 0
configure:16525: result: yes
configure:16533: checking for size_t
configure:16533: result: yes
configure:16544: checking for off_t
configure:16544: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:16544: $? = 0
configure:16544: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:130:20: error: expected expression before ')' token
 if (sizeof ((off_t)))
                    ^
configure:16544: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((off_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:16544: result: yes
configure:16555: checking for size_t
configure:16555: result: yes
configure:16564: checking for ssize_t
configure:16564: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:16564: $? = 0
configure:16564: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:131:22: error: expected expression before ')' token
 if (sizeof ((ssize_t)))
                      ^
configure:16564: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((ssize_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:16564: result: yes
configure:16573: checking for ptrdiff_t
configure:16573: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:16573: $? = 0
configure:16573: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:132:24: error: expected expression before ')' token
 if (sizeof ((ptrdiff_t)))
                        ^
configure:16573: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((ptrdiff_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:16573: result: yes
configure:16582: checking for uchar
configure:16582: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:133:13: error: 'uchar' undeclared (first use in this function)
 if (sizeof (uchar))
             ^~~~~
conftest.c:133:13: note: each undeclared identifier is reported only once for each function it appears in
configure:16582: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof (uchar))
| 	 return 0;
|   ;
|   return 0;
| }
configure:16582: result: no
configure:16591: checking for longlong
configure:16591: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:133:13: error: 'longlong' undeclared (first use in this function)
 if (sizeof (longlong))
             ^~~~~~~~
conftest.c:133:13: note: each undeclared identifier is reported only once for each function it appears in
configure:16591: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof (longlong))
| 	 return 0;
|   ;
|   return 0;
| }
configure:16591: result: no
configure:16600: checking for ushort
configure:16600: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:16600: $? = 0
configure:16600: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:133:21: error: expected expression before ')' token
 if (sizeof ((ushort)))
                     ^
configure:16600: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((ushort)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:16600: result: yes
configure:16609: checking for uint
configure:16609: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:16609: $? = 0
configure:16609: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:134:19: error: expected expression before ')' token
 if (sizeof ((uint)))
                   ^
configure:16609: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((uint)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:16609: result: yes
configure:16618: checking for int64
configure:16618: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:135:13: error: 'int64' undeclared (first use in this function)
 if (sizeof (int64))
             ^~~~~
conftest.c:135:13: note: each undeclared identifier is reported only once for each function it appears in
configure:16618: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof (int64))
| 	 return 0;
|   ;
|   return 0;
| }
configure:16618: result: no
configure:16627: checking for uint64
configure:16627: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:135:13: error: 'uint64' undeclared (first use in this function)
 if (sizeof (uint64))
             ^~~~~~
conftest.c:135:13: note: each undeclared identifier is reported only once for each function it appears in
configure:16627: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof (uint64))
| 	 return 0;
|   ;
|   return 0;
| }
configure:16627: result: no
configure:16637: checking whether char is unsigned
configure:16656: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:16656: $? = 0
configure:16663: result: no
configure:16670: checking whether byte ordering is bigendian
configure:16685: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c:100:9: error: unknown type name 'not'
         not a universal capable compiler
         ^~~
conftest.c:100:15: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'universal'
         not a universal capable compiler
               ^~~~~~~~~
conftest.c:100:15: error: unknown type name 'universal'
configure:16685: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| /* end confdefs.h.  */
| #ifndef __APPLE_CC__
| 	       not a universal capable compiler
| 	     #endif
| 	     typedef int dummy;
| 
configure:16730: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:16730: $? = 0
configure:16748: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
conftest.c: In function 'main':
conftest.c:106:4: error: unknown type name 'not'
    not big endian
    ^~~
conftest.c:106:12: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian'
    not big endian
            ^~~~~~
configure:16748: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| /* end confdefs.h.  */
| #include <sys/types.h>
| 		#include <sys/param.h>
| 
| int
| main ()
| {
| #if BYTE_ORDER != BIG_ENDIAN
| 		 not big endian
| 		#endif
| 
|   ;
|   return 0;
| }
configure:16876: result: no
configure:16912: checking size of short
configure:16917: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:16917: $? = 0
configure:16917: ./conftest
configure:16917: $? = 0
configure:16931: result: 2
configure:16946: checking size of int
configure:16951: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:16951: $? = 0
configure:16951: ./conftest
configure:16951: $? = 0
configure:16965: result: 4
configure:16980: checking size of long
configure:16985: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:16985: $? = 0
configure:16985: ./conftest
configure:16985: $? = 0
configure:16999: result: 8
configure:17014: checking size of long long
configure:17019: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:17019: $? = 0
configure:17019: ./conftest
configure:17019: $? = 0
configure:17033: result: 8
configure:17048: checking size of float
configure:17053: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:17053: $? = 0
configure:17053: ./conftest
configure:17053: $? = 0
configure:17067: result: 4
configure:17082: checking size of double
configure:17087: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:17087: $? = 0
configure:17087: ./conftest
configure:17087: $? = 0
configure:17101: result: 8
configure:17116: checking size of off_t
configure:17121: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:17121: $? = 0
configure:17121: ./conftest
configure:17121: $? = 0
configure:17135: result: 8
configure:17150: checking size of size_t
configure:17155: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:17155: $? = 0
configure:17155: ./conftest
configure:17155: $? = 0
configure:17169: result: 8
configure:17184: checking size of unsigned long long
configure:17189: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:17189: $? = 0
configure:17189: ./conftest
configure:17189: $? = 0
configure:17203: result: 8
configure:17220: checking size of ushort
configure:17225: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:17225: $? = 0
configure:17225: ./conftest
configure:17225: $? = 0
configure:17239: result: 2
configure:17291: checking size of uint
configure:17296: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:17296: $? = 0
configure:17296: ./conftest
configure:17296: $? = 0
configure:17310: result: 4
configure:17361: checking size of unsigned long long
configure:17380: result: 8
configure:17397: checking size of ushort
configure:17416: result: 2
configure:17467: checking size of uint
configure:17486: result: 4
configure:17536: checking size of ptrdiff_t
configure:17541: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
configure:17541: $? = 0
configure:17541: ./conftest
configure:17541: $? = 0
configure:17555: result: 8
configure:17568: checking for library containing deflate
configure:17599: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c  >&5
/tmp/ccHest2u.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `deflate'
collect2: error: ld returned 1 exit status
configure:17599: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_LONG_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_PTRDIFF_T 8
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char deflate ();
| int
| main ()
| {
| return deflate ();
|   ;
|   return 0;
| }
configure:17599: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lzlibwapi   >&5
/opt/generic/build-tools/1.0/bin/ld: cannot find -lzlibwapi
collect2: error: ld returned 1 exit status
configure:17599: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_LONG_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_PTRDIFF_T 8
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char deflate ();
| int
| main ()
| {
| return deflate ();
|   ;
|   return 0;
| }
configure:17599: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lzlibstat   >&5
/opt/generic/build-tools/1.0/bin/ld: cannot find -lzlibstat
collect2: error: ld returned 1 exit status
configure:17599: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_LONG_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_PTRDIFF_T 8
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char deflate ();
| int
| main ()
| {
| return deflate ();
|   ;
|   return 0;
| }
configure:17599: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lzlib   >&5
/opt/generic/build-tools/1.0/bin/ld: cannot find -lzlib
collect2: error: ld returned 1 exit status
configure:17599: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_LONG_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_PTRDIFF_T 8
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char deflate ();
| int
| main ()
| {
| return deflate ();
|   ;
|   return 0;
| }
configure:17599: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lzlib1   >&5
/opt/generic/build-tools/1.0/bin/ld: cannot find -lzlib1
collect2: error: ld returned 1 exit status
configure:17599: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_LONG_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_PTRDIFF_T 8
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char deflate ();
| int
| main ()
| {
| return deflate ();
|   ;
|   return 0;
| }
configure:17599: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lz   >&5
configure:17599: $? = 0
configure:17616: result: -lz
configure:17631: checking for floor in -lm
configure:17656: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lm  -lz  >&5
conftest.c:121:6: warning: conflicting types for built-in function 'floor'
 char floor ();
      ^~~~~
configure:17656: $? = 0
configure:17665: result: yes
configure:17692: checking for dlfcn.h
configure:17692: result: yes
configure:17707: checking for dlopen in -ldl
configure:17732: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -ldl  -lm -lz  >&5
configure:17732: $? = 0
configure:17741: result: yes
configure:17761: checking for library containing H5Fflush
configure:17792: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -ldl -lm -lz  >&5
/tmp/ccappSdY.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `H5Fflush'
collect2: error: ld returned 1 exit status
configure:17792: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_LONG_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_PTRDIFF_T 8
| #define HAVE_LIBM 1
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define HAVE_DLFCN_H 1
| #define HAVE_LIBDL 1
| #define USE_LIBDL 1
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fflush ();
| int
| main ()
| {
| return H5Fflush ();
|   ;
|   return 0;
| }
configure:17792: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lhdf5dll  -ldl -lm -lz  >&5
/opt/generic/build-tools/1.0/bin/ld: cannot find -lhdf5dll
collect2: error: ld returned 1 exit status
configure:17792: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_LONG_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_PTRDIFF_T 8
| #define HAVE_LIBM 1
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define HAVE_DLFCN_H 1
| #define HAVE_LIBDL 1
| #define USE_LIBDL 1
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Fflush ();
| int
| main ()
| {
| return H5Fflush ();
|   ;
|   return 0;
| }
configure:17792: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lhdf5  -ldl -lm -lz  >&5
configure:17792: $? = 0
configure:17809: result: -lhdf5
configure:17819: checking for library containing H5DSis_scale
configure:17850: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lhdf5 -ldl -lm -lz  >&5
/tmp/cc0RnL0c.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `H5DSis_scale'
collect2: error: ld returned 1 exit status
configure:17850: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_LONG_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_PTRDIFF_T 8
| #define HAVE_LIBM 1
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define HAVE_DLFCN_H 1
| #define HAVE_LIBDL 1
| #define USE_LIBDL 1
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5DSis_scale ();
| int
| main ()
| {
| return H5DSis_scale ();
|   ;
|   return 0;
| }
configure:17850: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lhdf5_hldll  -lhdf5 -ldl -lm -lz  >&5
/opt/generic/build-tools/1.0/bin/ld: cannot find -lhdf5_hldll
collect2: error: ld returned 1 exit status
configure:17850: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_LONG_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_PTRDIFF_T 8
| #define HAVE_LIBM 1
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define HAVE_DLFCN_H 1
| #define HAVE_LIBDL 1
| #define USE_LIBDL 1
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5DSis_scale ();
| int
| main ()
| {
| return H5DSis_scale ();
|   ;
|   return 0;
| }
configure:17850: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lhdf5_hl  -lhdf5 -ldl -lm -lz  >&5
configure:17850: $? = 0
configure:17867: result: -lhdf5_hl
configure:17880: checking hdf5.h usability
configure:17880: gcc -c -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c >&5
configure:17880: $? = 0
configure:17880: result: yes
configure:17880: checking hdf5.h presence
configure:17880: gcc -E  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include conftest.c
configure:17880: $? = 0
configure:17880: result: yes
configure:17880: checking for hdf5.h
configure:17880: result: yes
configure:17895: checking for H5Pget_fapl_mpiposix
configure:17895: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lhdf5_hl -lhdf5 -ldl -lm -lz  >&5
/tmp/cctgERpy.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `H5Pget_fapl_mpiposix'
collect2: error: ld returned 1 exit status
configure:17895: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_LONG_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_PTRDIFF_T 8
| #define HAVE_LIBM 1
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define HAVE_DLFCN_H 1
| #define HAVE_LIBDL 1
| #define USE_LIBDL 1
| #define HAVE_HDF5_H 1
| /* end confdefs.h.  */
| /* Define H5Pget_fapl_mpiposix to an innocuous variant, in case <limits.h> declares H5Pget_fapl_mpiposix.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define H5Pget_fapl_mpiposix innocuous_H5Pget_fapl_mpiposix
| 
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char H5Pget_fapl_mpiposix (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
| 
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| 
| #undef H5Pget_fapl_mpiposix
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Pget_fapl_mpiposix ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_H5Pget_fapl_mpiposix || defined __stub___H5Pget_fapl_mpiposix
| choke me
| #endif
| 
| int
| main ()
| {
| return H5Pget_fapl_mpiposix ();
|   ;
|   return 0;
| }
configure:17895: result: no
configure:17895: checking for H5Pget_fapl_mpio
configure:17895: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lhdf5_hl -lhdf5 -ldl -lm -lz  >&5
/tmp/ccZobBpy.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `H5Pget_fapl_mpio'
collect2: error: ld returned 1 exit status
configure:17895: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_LONG_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_PTRDIFF_T 8
| #define HAVE_LIBM 1
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define HAVE_DLFCN_H 1
| #define HAVE_LIBDL 1
| #define USE_LIBDL 1
| #define HAVE_HDF5_H 1
| /* end confdefs.h.  */
| /* Define H5Pget_fapl_mpio to an innocuous variant, in case <limits.h> declares H5Pget_fapl_mpio.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define H5Pget_fapl_mpio innocuous_H5Pget_fapl_mpio
| 
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char H5Pget_fapl_mpio (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
| 
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| 
| #undef H5Pget_fapl_mpio
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Pget_fapl_mpio ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_H5Pget_fapl_mpio || defined __stub___H5Pget_fapl_mpio
| choke me
| #endif
| 
| int
| main ()
| {
| return H5Pget_fapl_mpio ();
|   ;
|   return 0;
| }
configure:17895: result: no
configure:17895: checking for H5Pset_deflate
configure:17895: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lhdf5_hl -lhdf5 -ldl -lm -lz  >&5
configure:17895: $? = 0
configure:17895: result: yes
configure:17895: checking for H5Z_SZIP
configure:17895: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lhdf5_hl -lhdf5 -ldl -lm -lz  >&5
/tmp/ccJSBAOH.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `H5Z_SZIP'
collect2: error: ld returned 1 exit status
configure:17895: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "netCDF"
| #define PACKAGE_TARNAME "netcdf"
| #define PACKAGE_VERSION "4.4.1.1"
| #define PACKAGE_STRING "netCDF 4.4.1.1"
| #define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
| #define PACKAGE_URL ""
| #define PACKAGE "netcdf"
| #define VERSION "4.4.1.1"
| #define NCIO_MINBLOCKSIZE 256
| #define DEFAULT_CHUNK_SIZE 4194304
| #define MAX_DEFAULT_CACHE_SIZE 67108864
| #define DEFAULT_CHUNKS_IN_CACHE 10
| #define CHUNK_CACHE_SIZE 4194304
| #define CHUNK_CACHE_NELEMS 1009
| #define CHUNK_CACHE_PREEMPTION 0.75
| #define EXTRA_TESTS 1
| #define USE_NETCDF_2 1
| #define USE_EXTREME_NUMBERS 1
| #define TEMP_LARGE "."
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_WAIT_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_LOCALE_H 1
| #define HAVE_STDIO_H 1
| #define HAVE_STDARG_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_CTYPE_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_GETOPT_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_VPRINTF 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_SNPRINTF 1
| #define HAVE_STRCHR 1
| #define HAVE_STRRCHR 1
| #define HAVE_STRCAT 1
| #define HAVE_STRCPY 1
| #define HAVE_STRDUP 1
| #define HAVE_STRCASECMP 1
| #define HAVE_STRTOD 1
| #define HAVE_STRTOLL 1
| #define HAVE_STRTOULL 1
| #define HAVE_STRSTR 1
| #define HAVE_MKSTEMP 1
| #define HAVE_RAND 1
| #define HAVE_RANDOM 1
| #define HAVE_MEMCMP 1
| #define HAVE_GETRLIMIT 1
| #define HAVE_GETTIMEOFDAY 1
| #define HAVE_FSYNC 1
| #define HAVE_MEMMOVE 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_SYSCONF 1
| #define HAVE_STDLIB_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SYS_PARAM_H 1
| #define HAVE_GETPAGESIZE 1
| #define HAVE_MMAP 1
| #define HAVE_MREMAP 1
| #define USE_DISKLESS 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_DECL_ISNAN 1
| #define HAVE_DECL_ISINF 1
| #define HAVE_DECL_ISFINITE 1
| #define HAVE_DECL_SIGNBIT 1
| #define HAVE_STRUCT_STAT_ST_BLKSIZE 1
| #define HAVE_ST_BLKSIZE 1
| #define HAVE_SIZE_T 1
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| #define SIZEOF_SHORT 2
| #define SIZEOF_INT 4
| #define SIZEOF_LONG 8
| #define SIZEOF_LONG_LONG 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_OFF_T 8
| #define SIZEOF_SIZE_T 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define SIZEOF_USHORT 2
| #define SIZEOF_UINT 4
| #define SIZEOF_PTRDIFF_T 8
| #define HAVE_LIBM 1
| #define USE_NETCDF4 1
| #define H5_USE_16_API 1
| #define HAVE_DLFCN_H 1
| #define HAVE_LIBDL 1
| #define USE_LIBDL 1
| #define HAVE_HDF5_H 1
| #define HAVE_H5PSET_DEFLATE 1
| /* end confdefs.h.  */
| /* Define H5Z_SZIP to an innocuous variant, in case <limits.h> declares H5Z_SZIP.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define H5Z_SZIP innocuous_H5Z_SZIP
| 
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char H5Z_SZIP (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
| 
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| 
| #undef H5Z_SZIP
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char H5Z_SZIP ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_H5Z_SZIP || defined __stub___H5Z_SZIP
| choke me
| #endif
| 
| int
| main ()
| {
| return H5Z_SZIP ();
|   ;
|   return 0;
| }
configure:17895: result: no
configure:17895: checking for H5free_memory
configure:17895: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lhdf5_hl -lhdf5 -ldl -lm -lz  >&5
configure:17895: $? = 0
configure:17895: result: yes
configure:17924: checking whether parallel io is enabled in hdf5
configure:17926: result: no
configure:18189: checking whether parallel I/O is enabled for netcdf-4
configure:18197: result: yes
configure:18205: WARNING: Parallel io disabled for netcdf-4 because hdf5 does not support
configure:18212: checking whether parallel I/O for classic files is to be enabled
configure:18220: result: no
configure:18609: checking for unsigned long long int
configure:18648: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lhdf5_hl -lhdf5 -ldl -lm -lz  >&5
configure:18648: $? = 0
configure:18657: result: yes
configure:18667: checking for long long int
configure:18705: gcc -o conftest -m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib  -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include  -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib conftest.c -lhdf5_hl -lhdf5 -ldl -lm -lz  >&5
configure:18705: $? = 0
configure:18705: ./conftest
configure:18705: $? = 0
configure:18717: result: yes
configure:18726: checking for unsigned long long int
configure:18774: result: yes
configure:18791: checking what to call the output of the ftpbin target
configure:18797: result: binary-netcdf-4.4.1.1.tar gfortran g++
configure:18803: checking if libtool needs -no-undefined flag to build shared libraries
configure:18814: result: no
configure:18819: checking value of LIBS
configure:18821: result: -lhdf5_hl -lhdf5 -ldl -lm -lz 
configure:18855: checking If compilation is for use with JNA
configure:18865: result: no
configure:19031: generating header files and makefiles
configure:19144: checking that generated files are newer than configure
configure:19150: result: done
configure:19338: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by netCDF config.status 4.4.1.1, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on nicpa-000

config.status:1372: creating Makefile
config.status:1372: creating nc-config
config.status:1372: creating netcdf.pc
config.status:1372: creating libnetcdf.settings
config.status:1372: creating postinstall.sh
config.status:1372: creating include/netcdf_meta.h
config.status:1372: creating include/Makefile
config.status:1372: creating h5_test/Makefile
config.status:1372: creating docs/Makefile
config.status:1372: creating docs/images/Makefile
config.status:1372: creating libsrc/Makefile
config.status:1372: creating libsrc4/Makefile
config.status:1372: creating libsrcp/Makefile
config.status:1372: creating nctest/Makefile
config.status:1372: creating nc_test4/Makefile
config.status:1372: creating nc_test/Makefile
config.status:1372: creating ncdump/Makefile
config.status:1372: creating ncgen3/Makefile
config.status:1372: creating ncgen/Makefile
config.status:1372: creating examples/Makefile
config.status:1372: creating examples/C/Makefile
config.status:1372: creating examples/CDL/Makefile
config.status:1372: creating oc2/Makefile
config.status:1372: creating libdap2/Makefile
config.status:1372: creating libdispatch/Makefile
config.status:1372: creating liblib/Makefile
config.status:1372: creating ncdump/cdl/Makefile
config.status:1372: creating ncdump/expected/Makefile
config.status:1372: creating ncdap_test/Makefile
config.status:1372: creating ncdap_test/testdata3/Makefile
config.status:1372: creating ncdap_test/expected3/Makefile
config.status:1372: creating ncdap_test/expected4/Makefile
config.status:1372: creating ncdap_test/expectremote3/Makefile
config.status:1372: creating ncdap_test/expectremote4/Makefile
config.status:1372: creating config.h
config.status:1598: linking ../nc_test4/ref_hdf5_compat1.nc to nc_test4/ref_hdf5_compat1.nc
config.status:1598: linking ../nc_test4/ref_hdf5_compat2.nc to nc_test4/ref_hdf5_compat2.nc
config.status:1598: linking ../nc_test4/ref_hdf5_compat3.nc to nc_test4/ref_hdf5_compat3.nc
config.status:1617: executing depfiles commands
config.status:1617: executing libtool commands

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_bigendian=no
ac_cv_c_char_unsigned=no
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_ieeefloat=yes
ac_cv_env_CC_set=set
ac_cv_env_CC_value=gcc
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib'
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value=' -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include'
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=' -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib'
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_LT_SYS_LIBRARY_PATH_set=
ac_cv_env_LT_SYS_LIBRARY_PATH_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_H5Pget_fapl_mpio=no
ac_cv_func_H5Pget_fapl_mpiposix=no
ac_cv_func_H5Pset_deflate=yes
ac_cv_func_H5Z_SZIP=no
ac_cv_func_H5free_memory=yes
ac_cv_func_MPI_Comm_f2c=no
ac_cv_func__doprnt=no
ac_cv_func_alloca_works=yes
ac_cv_func_fsync=yes
ac_cv_func_getpagesize=yes
ac_cv_func_getrlimit=yes
ac_cv_func_gettimeofday=yes
ac_cv_func_memcmp=yes
ac_cv_func_memmove=yes
ac_cv_func_mkstemp=yes
ac_cv_func_mmap_fixed_mapped=yes
ac_cv_func_mremap=yes
ac_cv_func_rand=yes
ac_cv_func_random=yes
ac_cv_func_snprintf=yes
ac_cv_func_strcasecmp=yes
ac_cv_func_strcat=yes
ac_cv_func_strchr=yes
ac_cv_func_strcpy=yes
ac_cv_func_strdup=yes
ac_cv_func_strerror=yes
ac_cv_func_strlcat=no
ac_cv_func_strrchr=yes
ac_cv_func_strstr=yes
ac_cv_func_strtod=yes
ac_cv_func_strtoll=yes
ac_cv_func_strtoull=yes
ac_cv_func_sysconf=yes
ac_cv_func_vprintf=yes
ac_cv_have_decl_isfinite=yes
ac_cv_have_decl_isinf=yes
ac_cv_have_decl_isnan=yes
ac_cv_have_decl_signbit=yes
ac_cv_header_ctype_h=yes
ac_cv_header_dirent_dirent_h=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_errno_h=yes
ac_cv_header_fcntl_h=yes
ac_cv_header_getopt_h=yes
ac_cv_header_hdf5_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_locale_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdarg_h=yes
ac_cv_header_stdbool_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdio_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_param_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_time_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_sys_wait_h=yes
ac_cv_header_time=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_lib_curl_curl_easy_setopt=no
ac_cv_lib_dl_dlopen=yes
ac_cv_lib_m_floor=yes
ac_cv_member_struct_stat_st_blksize=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_lt_DD=/bin/dd
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=mawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_NC_M4=m4
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_MANIFEST_TOOL=mt
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=gcc-ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_H5DSis_scale=-lhdf5_hl
ac_cv_search_H5Fflush=-lhdf5
ac_cv_search_deflate=-lz
ac_cv_search_opendir='none required'
ac_cv_sizeof_double=8
ac_cv_sizeof_float=4
ac_cv_sizeof_int=4
ac_cv_sizeof_long=8
ac_cv_sizeof_long_long=8
ac_cv_sizeof_off_t=8
ac_cv_sizeof_ptrdiff_t=8
ac_cv_sizeof_short=2
ac_cv_sizeof_size_t=8
ac_cv_sizeof_uint=4
ac_cv_sizeof_unsigned_long_long=8
ac_cv_sizeof_ushort=2
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
ac_cv_target=x86_64-unknown-linux-gnu
ac_cv_type__Bool=yes
ac_cv_type_int64=no
ac_cv_type_long_long_int=yes
ac_cv_type_longlong=no
ac_cv_type_off_t=yes
ac_cv_type_ptrdiff_t=yes
ac_cv_type_size_t=yes
ac_cv_type_ssize_t=yes
ac_cv_type_uchar=no
ac_cv_type_uint64=no
ac_cv_type_uint=yes
ac_cv_type_unsigned_long_long_int=yes
ac_cv_type_ushort=yes
ac_cv_working_alloca_h=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/opt/generic/build-tools/1.0/bin/ld
lt_cv_path_NM='/opt/generic/build-tools/1.0/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_gnu_ld=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[	 ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[	 ][	 ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/  {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/  {"\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/  {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/  {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/  {"lib\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_global_symbol_to_import=
lt_cv_sys_max_cmd_len=3458764513820540925
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
lt_cv_truncate_bin='/bin/dd bs=4096 count=1'

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/nicpa/phd/code/install/.compile/netcdf-c-4.4.1.1/missing aclocal-1.15'
ALLOCA=''
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CFLAGS=''
AM_CPPFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_LDFLAGS=''
AM_V='$(V)'
AR='gcc-ar'
AS='as'
AUTOCONF='${SHELL} /home/nicpa/phd/code/install/.compile/netcdf-c-4.4.1.1/missing autoconf'
AUTOHEADER='${SHELL} /home/nicpa/phd/code/install/.compile/netcdf-c-4.4.1.1/missing autoheader'
AUTOMAKE='${SHELL} /home/nicpa/phd/code/install/.compile/netcdf-c-4.4.1.1/missing automake-1.15'
AWK='mawk'
BINFILE_NAME='binary-netcdf-4.4.1.1.tar'
BUILD_BENCHMARKS_FALSE=''
BUILD_BENCHMARKS_TRUE='#'
BUILD_DAP_FALSE=''
BUILD_DAP_TRUE='#'
BUILD_DISKLESS_FALSE='#'
BUILD_DISKLESS_TRUE=''
BUILD_DLL_FALSE=''
BUILD_DLL_TRUE='#'
BUILD_DOCS_FALSE=''
BUILD_DOCS_TRUE='#'
BUILD_EXAMPLES_FALSE='#'
BUILD_EXAMPLES_TRUE=''
BUILD_FORTRAN_FALSE=''
BUILD_FORTRAN_TRUE='#'
BUILD_INTERNAL_DOCS='no'
BUILD_MMAP_FALSE=''
BUILD_MMAP_TRUE='#'
BUILD_PARALLEL_FALSE=''
BUILD_PARALLEL_TRUE='#'
BUILD_TESTSETS_FALSE='#'
BUILD_TESTSETS_TRUE=''
BUILD_UTILITIES_FALSE='#'
BUILD_UTILITIES_TRUE=''
BUILD_V2_FALSE='#'
BUILD_V2_TRUE=''
CC='gcc'
CCDEPMODE='depmode=gcc3'
CC_VERSION='/opt/generic/gcc/6.3.0/bin/gcc'
CFLAGS='-m64 -fPIC -O3 -ftree-vectorize -fexpensive-optimizations -funroll-loops -fprefetch-loop-arrays -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib'
CONFIG_DATE='Wed Feb 15 08:06:29 UTC 2017'
CPP='gcc -E'
CPPFLAGS=' -I/opt/generic/build-tools/1.0/include -I/opt/generic/gmp/6.1.0/include -I/opt/generic/mpfr/3.1.4/include -I/opt/generic/mpc/1.0.3/include -I/opt/generic/isl/0.16.1/include -I/opt/generic/gcc/6.3.0/include -I/opt/zlib/1.2.11/gnu-6.3.0/include -I/opt/hdf5-serial/1.10.0/gnu-6.3.0/include'
CROSS_COMPILING_FALSE=''
CROSS_COMPILING_TRUE='#'
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DLLTOOL='false'
DOT=''
DOXYGEN=''
DOXYGEN_BUILD_RELEASE_DOCS_FALSE=''
DOXYGEN_BUILD_RELEASE_DOCS_TRUE='#'
DOXYGEN_CSS_FILE=''
DOXYGEN_HEADER_FILE=''
DOXYGEN_SEARCHENGINE='YES'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
ENABLE_DAP_AUTH_TESTS_FALSE=''
ENABLE_DAP_AUTH_TESTS_TRUE='#'
ENABLE_DAP_LONG_TESTS_FALSE=''
ENABLE_DAP_LONG_TESTS_TRUE='#'
ENABLE_DAP_REMOTE_TESTS_FALSE=''
ENABLE_DAP_REMOTE_TESTS_TRUE='#'
EXEEXT=''
EXTRA_EXAMPLE_TESTS_FALSE=''
EXTRA_EXAMPLE_TESTS_TRUE='#'
EXTRA_TESTS_FALSE='#'
EXTRA_TESTS_TRUE=''
FGREP='/bin/grep -F'
GREP='/bin/grep'
HAS_DAP='no'
HAS_DISKLESS='yes'
HAS_HDF4='no'
HAS_HDF5='yes'
HAS_JNA='no'
HAS_LOGGING='no'
HAS_MMAP='no'
HAS_NC2='yes'
HAS_NC4='yes'
HAS_PARALLEL4='no'
HAS_PARALLEL='no'
HAS_PNETCDF='no'
HAS_SZLIB=''
HAVE_DOT='NO'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
INTERNAL_OCLIB_FALSE='#'
INTERNAL_OCLIB_TRUE=''
LARGE_FILE_TESTS_FALSE=''
LARGE_FILE_TESTS_TRUE='#'
LD='/opt/generic/build-tools/1.0/bin/ld -m elf_x86_64'
LDFLAGS=' -L/opt/generic/build-tools/1.0/lib -L/opt/generic/gmp/6.1.0/lib -L/opt/generic/mpfr/3.1.4/lib -L/opt/generic/mpc/1.0.3/lib -L/opt/generic/isl/0.16.1/lib -L/opt/generic/gcc/6.3.0/lib64 -L/opt/zlib/1.2.11/gnu-6.3.0/lib -L/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib -Wl,-rpath=/opt/generic/build-tools/1.0/lib -Wl,-rpath=/opt/generic/gmp/6.1.0/lib -Wl,-rpath=/opt/generic/mpfr/3.1.4/lib -Wl,-rpath=/opt/generic/mpc/1.0.3/lib -Wl,-rpath=/opt/generic/isl/0.16.1/lib -Wl,-rpath=/opt/generic/gcc/6.3.0/lib64 -Wl,-rpath=/opt/zlib/1.2.11/gnu-6.3.0/lib -Wl,-rpath=/opt/hdf5-serial/1.10.0/gnu-6.3.0/lib'
LIBOBJS=''
LIBS='-lhdf5_hl -lhdf5 -ldl -lm -lz '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
LT_SYS_LIBRARY_PATH=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /home/nicpa/phd/code/install/.compile/netcdf-c-4.4.1.1/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
NC_ENABLE_DOXYGEN_PDF_OUTPUT=''
NC_ENABLE_DOXYGEN_PDF_OUTPUT_FALSE=''
NC_ENABLE_DOXYGEN_PDF_OUTPUT_TRUE='#'
NC_HAS_DAP='0'
NC_HAS_DISKLESS='1'
NC_HAS_HDF4='0'
NC_HAS_HDF5='1'
NC_HAS_JNA='0'
NC_HAS_MMAP='0'
NC_HAS_NC2='1'
NC_HAS_NC4='1'
NC_HAS_PARALLEL4='0'
NC_HAS_PARALLEL='0'
NC_HAS_PNETCDF='0'
NC_HAS_SZIP='0'
NC_LIBS='-lnetcdf'
NC_M4='m4'
NC_VERSION='4.4.1.1'
NC_VERSION_MAJOR='4'
NC_VERSION_MINOR='4'
NC_VERSION_NOTE='.1'
NC_VERSION_PATCH='1'
NM='/opt/generic/build-tools/1.0/bin/nm -B'
NMEDIT=''
NOUNDEFINED=''
OBJDUMP='objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='netcdf'
PACKAGE_BUGREPORT='support-netcdf@unidata.ucar.edu'
PACKAGE_NAME='netCDF'
PACKAGE_STRING='netCDF 4.4.1.1'
PACKAGE_TARNAME='netcdf'
PACKAGE_URL=''
PACKAGE_VERSION='4.4.1.1'
PATH_SEPARATOR=':'
RANLIB='gcc-ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/bash'
SHOW_DOXYGEN_TAG_LIST='no'
SHOW_DOXYGEN_TAG_LIST_FALSE=''
SHOW_DOXYGEN_TAG_LIST_TRUE='#'
STRIP='strip'
TEST_PARALLEL4_FALSE=''
TEST_PARALLEL4_TRUE='#'
USE_DAP_FALSE=''
USE_DAP_TRUE='#'
USE_DISPATCH_FALSE=''
USE_DISPATCH_TRUE='#'
USE_FFIO_FALSE=''
USE_FFIO_TRUE='#'
USE_HDF4_FALSE=''
USE_HDF4_FILE_TESTS_FALSE=''
USE_HDF4_FILE_TESTS_TRUE='#'
USE_HDF4_TRUE='#'
USE_LOGGING_FALSE=''
USE_LOGGING_TRUE='#'
USE_NETCDF4_FALSE='#'
USE_NETCDF4_TRUE=''
USE_PNETCDF_DIR_FALSE=''
USE_PNETCDF_DIR_TRUE='#'
USE_PNETCDF_FALSE=''
USE_PNETCDF_TRUE='#'
USE_RENAMEV3_FALSE='#'
USE_RENAMEV3_TRUE=''
USE_STDIO_FALSE=''
USE_STDIO_TRUE='#'
USE_SZIP_FALSE=''
USE_SZIP_TRUE='#'
USE_VALGRIND_TESTS_FALSE=''
USE_VALGRIND_TESTS_TRUE='#'
VERSION='4.4.1.1'
ac_ct_AR=''
ac_ct_CC='gcc'
ac_ct_DUMPBIN=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__include='include'
am__isrc=' -I$(srcdir)'
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_shared='yes'
enable_static='yes'
exec_prefix='${prefix}'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/nicpa/phd/code/install/.compile/netcdf-c-4.4.1.1/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/opt/netcdf-serial/4.4.1.1/gnu-6.3.0'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target='x86_64-unknown-linux-gnu'
target_alias=''
target_cpu='x86_64'
target_os='linux-gnu'
target_vendor='unknown'

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "netCDF"
#define PACKAGE_TARNAME "netcdf"
#define PACKAGE_VERSION "4.4.1.1"
#define PACKAGE_STRING "netCDF 4.4.1.1"
#define PACKAGE_BUGREPORT "support-netcdf@unidata.ucar.edu"
#define PACKAGE_URL ""
#define PACKAGE "netcdf"
#define VERSION "4.4.1.1"
#define NCIO_MINBLOCKSIZE 256
#define DEFAULT_CHUNK_SIZE 4194304
#define MAX_DEFAULT_CACHE_SIZE 67108864
#define DEFAULT_CHUNKS_IN_CACHE 10
#define CHUNK_CACHE_SIZE 4194304
#define CHUNK_CACHE_NELEMS 1009
#define CHUNK_CACHE_PREEMPTION 0.75
#define EXTRA_TESTS 1
#define USE_NETCDF_2 1
#define USE_EXTREME_NUMBERS 1
#define TEMP_LARGE "."
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_SYS_PARAM_H 1
#define HAVE_DIRENT_H 1
#define STDC_HEADERS 1
#define HAVE_SYS_WAIT_H 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_LOCALE_H 1
#define HAVE_STDIO_H 1
#define HAVE_STDARG_H 1
#define HAVE_ERRNO_H 1
#define HAVE_CTYPE_H 1
#define HAVE_FCNTL_H 1
#define HAVE_MALLOC_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_STRINGS_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_GETOPT_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_VPRINTF 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE__BOOL 1
#define HAVE_STDBOOL_H 1
#define HAVE_STRERROR 1
#define HAVE_SNPRINTF 1
#define HAVE_STRCHR 1
#define HAVE_STRRCHR 1
#define HAVE_STRCAT 1
#define HAVE_STRCPY 1
#define HAVE_STRDUP 1
#define HAVE_STRCASECMP 1
#define HAVE_STRTOD 1
#define HAVE_STRTOLL 1
#define HAVE_STRTOULL 1
#define HAVE_STRSTR 1
#define HAVE_MKSTEMP 1
#define HAVE_RAND 1
#define HAVE_RANDOM 1
#define HAVE_MEMCMP 1
#define HAVE_GETRLIMIT 1
#define HAVE_GETTIMEOFDAY 1
#define HAVE_FSYNC 1
#define HAVE_MEMMOVE 1
#define HAVE_GETPAGESIZE 1
#define HAVE_SYSCONF 1
#define HAVE_STDLIB_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SYS_PARAM_H 1
#define HAVE_GETPAGESIZE 1
#define HAVE_MMAP 1
#define HAVE_MREMAP 1
#define USE_DISKLESS 1
#define HAVE_ALLOCA_H 1
#define HAVE_ALLOCA 1
#define HAVE_DECL_ISNAN 1
#define HAVE_DECL_ISINF 1
#define HAVE_DECL_ISFINITE 1
#define HAVE_DECL_SIGNBIT 1
#define HAVE_STRUCT_STAT_ST_BLKSIZE 1
#define HAVE_ST_BLKSIZE 1
#define HAVE_SIZE_T 1
#define HAVE_SSIZE_T 1
#define HAVE_PTRDIFF_T 1
#define HAVE_USHORT 1
#define HAVE_UINT 1
#define SIZEOF_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_LONG 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_OFF_T 8
#define SIZEOF_SIZE_T 8
#define SIZEOF_UNSIGNED_LONG_LONG 8
#define SIZEOF_USHORT 2
#define SIZEOF_UINT 4
#define SIZEOF_UNSIGNED_LONG_LONG 8
#define SIZEOF_USHORT 2
#define SIZEOF_UINT 4
#define SIZEOF_PTRDIFF_T 8
#define HAVE_LIBM 1
#define USE_NETCDF4 1
#define H5_USE_16_API 1
#define HAVE_DLFCN_H 1
#define HAVE_LIBDL 1
#define USE_LIBDL 1
#define HAVE_HDF5_H 1
#define HAVE_H5PSET_DEFLATE 1
#define HAVE_H5FREE_MEMORY 1
#define USE_ZLIB 1
#define HDF5_HAS_H5FREE 1
#define HAVE_UNSIGNED_LONG_LONG_INT 1
#define HAVE_LONG_LONG_INT 1
#define HAVE_UNSIGNED_LONG_LONG_INT 1

configure: exit 0