From f4afdc5648641afd37890098de327d33774d01ed Mon Sep 17 00:00:00 2001 From: Michael Harms Date: Fri, 22 May 2020 18:27:24 -0500 Subject: [PATCH] Bug: Fix two incorrect column header names in stats file that quantifies overlap between subject ROIs and Atlas --- .../scripts/FreeSurfer2CaretConvertAndRegisterNonlinear.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/PostFreeSurfer/scripts/FreeSurfer2CaretConvertAndRegisterNonlinear.sh b/PostFreeSurfer/scripts/FreeSurfer2CaretConvertAndRegisterNonlinear.sh index e872a2e76..7ef8b9362 100755 --- a/PostFreeSurfer/scripts/FreeSurfer2CaretConvertAndRegisterNonlinear.sh +++ b/PostFreeSurfer/scripts/FreeSurfer2CaretConvertAndRegisterNonlinear.sh @@ -279,7 +279,7 @@ for GrayordinatesResolution in ${GrayordinatesResolutions} ; do cut -d ':' -f 3 ${SubjROIsSplit}.outside.stats.txt > ${SubjROIsSplit}.outside.stats.value.txt outFile="$AtlasSpaceFolder"/ROIs/MissingGrayordinates."$GrayordinatesResolution".txt - echo "Structure,nMissing2xDilBrainMaskFromAtlas,nMissingBrainMaskFromAtlas,nMissing2xDilROIFromAtlas,nMissingROIFromAtlas,nROIOverlapAtlas,nROIOutsideAtlas" > ${outFile} + echo "Structure,nMissing2xDilBrainMaskFromAtlas,nMissingBrainMaskFromAtlas,nMissingROIFromAtlas,nOverlap2xDilROIWithAtlas,nROIOverlapAtlas,nROIOutsideAtlas" > ${outFile} echo "ALL,${MissingGrayordinatesDil2xTotal},${MissingGrayordinatesTotal},,,," >> ${outFile} paste -d ',' ${MissingSplit}.stats.roinames.txt ${MissingSplit}.dil2xBrainMask.stats.value.txt ${MissingSplit}.stats.value.txt ${SubjROIsSplit}.missing.stats.value.txt ${SubjROIsSplit}.dil2x.overlap.stats.value.txt ${SubjROIsSplit}.overlap.stats.value.txt ${SubjROIsSplit}.outside.stats.value.txt | tr -d '[:blank:]' >> ${outFile}