diff --git a/.github/workflows/python-pkg.yml b/.github/workflows/python-pkg.yml index c09ffef..10265c8 100644 --- a/.github/workflows/python-pkg.yml +++ b/.github/workflows/python-pkg.yml @@ -35,7 +35,7 @@ jobs: miniconda-version: "latest" auto-update-conda: true mamba-version: "*" - python-version: ${{ matrix.python-version }} + python-version: "3.11" channels: conda-forge,bioconda,pytorch,nvidia environment-file: environment.yml - name: "Install pytest" diff --git a/environment.yml b/environment.yml index d283841..46ff893 100644 --- a/environment.yml +++ b/environment.yml @@ -6,18 +6,19 @@ channels: - conda-forge dependencies: - python==3.11 - - pytorch - - pytorch-cuda==12.1 - - torchvision - - torchaudio - - torchmetrics - - cuda-toolkit + - pytorch::pytorch + - pytorch::pytorch-cuda + - pytorch::torchvision + - pytorch::torchaudio + - conda-forge::torchmetrics + - conda-forge::cuda-toolkit + - bioconda::basenji + - conda-forge::anndata - numpy - pandas - python-igraph - leidenalg - scikit-learn - - bioconda::basenji - matplotlib - dill - pynvml