Command line: /mnt/shared/scratch/amosca/apps/conda/envs/spades/bin/spades.py	--meta	-m	1000	-t	24	-1	/mnt/shared/scratch/amosca/transfer_test/C4-A2-S32_1.filtered_1.fq.gz	-2	/mnt/shared/scratch/amosca/transfer_test/C4-A2-S32_1.filtered_2.fq.gz	--dataset	/mnt/shared/scratch/amosca/transfer_test/seq_files_rhizosphere_0203.yaml	-t	24	-o	/mnt/shared/scratch/amosca/transfer_test/spades_rhizo_filtered	

System information:
  SPAdes version: 3.15.5
  Python version: 3.11.0
  OS: Linux-4.18.0-425.10.1.el8_7.x86_64-x86_64-with-glibc2.28

Output dir: /mnt/shared/scratch/amosca/transfer_test/spades_rhizo_filtered
Mode: read error correction and assembling
Debug mode is turned OFF

Dataset parameters:
  Metagenomic mode
  Reads:
    Library number: 1, library type: paired-end
      orientation: fr
      left reads: ['/mnt/shared/scratch/amosca/transfer_test/C4-A2-S32_1.filtered_2.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/C5-A2-S3.filtered_2.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/C5-B2-S11.filtered_2.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/D1-B2-2-S21.filtered_2.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/D4-A2-2-S22.filtered_2.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/D6-B2-2-S23.filtered_2.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/M7-A2-2-S15.filtered_2.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/M9-A2-2-S4.filtered_2.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/P3-B2-S30.filtered_2.fq.gz']
      right reads: ['/mnt/shared/scratch/amosca/transfer_test/C4-A2-S32_1.filtered_1.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/C5-A2-S3.filtered_1.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/C5-B2-S11.filtered_1.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/D1-B2-2-S21.filtered_1.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/D4-A2-2-S22.filtered_1.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/D6-B2-2-S23.filtered_1.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/M7-A2-2-S15.filtered_1.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/M9-A2-2-S4.filtered_1.fq.gz', '/mnt/shared/scratch/amosca/transfer_test/P3-B2-S30.filtered_1.fq.gz']
      interlaced reads: not specified
      single reads: not specified
      merged reads: not specified
Read error correction parameters:
  Iterations: 1
  PHRED offset will be auto-detected
  Corrected reads will be compressed
Assembly parameters:
  k: [21, 33, 55]
  Repeat resolution is enabled
  Mismatch careful mode is turned OFF
  MismatchCorrector will be SKIPPED
  Coverage cutoff is turned OFF
Other parameters:
  Dir for temp files: /mnt/shared/scratch/amosca/transfer_test/spades_rhizo_filtered/tmp
  Threads: 24
  Memory limit (in Gb): 1000