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Task processing logs should record apptainer overlays being used #1387
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prioux
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Enhancement
Priority: Normal
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Features or bugs related to administrative features
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Apr 22, 2024
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When a CbrainTask is launched, the associated ToolConfig object can specify a list of overlays to mount within the apptainer container. This list is maintained in the attribute
singularity_overlays_specs
. During theSetting Up
stage of the task, these overlays are fetched (if needed) to cache and their paths are added to theapptainer run
command.However, the task's log has no record of these paths begin set up, because the work is performed by a method in the ToolConfig class (method
singularity_overlays_full_paths
).I'd like the code to be adjusted so that the task's setup log says explicitely which files are mounted and how they were fetched (direct configuration with a path, or through a userfile, etc etc).
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