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File lists and Boutiques-based tools #831
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MontrealSergiy
changed the title
support for boutiques with file lists
support for boutiques' file lists
Jun 27, 2019
MontrealSergiy
changed the title
support for boutiques' file lists
Support for boutiques' file lists
Jun 27, 2019
MontrealSergiy
changed the title
Support for boutiques' file lists
File lists and Boutiques-based tools
Jun 27, 2019
prioux
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Jun 27, 2019
1- The controls channel for Bourreau has a new 'StopYourself' command, which is much more efficient than the old way of stopping the rails app using an external script. Fixes aces#55 . 2- The 'ibc' utility provides access to it with the 'J' command 3- Tooltips in the interface could never be positioned at offset_x set to 0 because 0 is falsy in javascript. Fixed. 4- We no longer ever keep a backup of database.yml on remote sites. 5- Userfiles viewers that have conditions which crash no longer prevent the 'show' page from rendering; instead the viewer is ignored and removed from the available list. Fixes aces#25 6- Task forms for boutiques tasks will present list inputs in proper order. Fixes aces#830 7- Support for lists for File inputs in boutiques Fixes aces#831
Implemented in #832 |
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Intro:
CBRAIN supports import of tools in Boutiques format. Regretfully, input parameters of FIle type in Boutiques tool descriptors, are not properly supported in CBRAIN, while, I think users and tool developers could benefit from full file list support.
An example of the file list input in Boutiques format:
(see https://raw.githubusercontent.com/MontrealSergiy/cbrain-plugins-eeg/bugs/cbrain_task_descriptors/filelistbug.json for full descriptor)
CBRAIN seemingly imports boutiques descriptors with file lists without any warning or error message, configuring and executing tool's task is ridden with several issues.
Steps to reproduce issues:
Observed: User can only supply one file per input, and, anyway, the command line will be malformed and (usually) fail
Expected: User should be able to provide multiple files and put them into file list, perhaps in the same way he can create integer or string lists
Note 1: The lists of numbers or strings are supported by CBRAIN, the problem is with file lists
Note 2: Older versions of boutiques had a few issues with file lists, which are fixed by now
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