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SQL on FHIR view runner #1775

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Commits on Sep 21, 2023

  1. Implementing extension support and 'typeOf' operation.

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Commits on Sep 26, 2023

  1. Refactoring of FHIRViews execution. 

    Implementation of 'union' and 'forEach' clauses.
Separation of 'v1' FHIRView test from our custom enhanced tests.
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  2. Added (temporarily) new 'v1' tests to extended tests. 

    Implemented 'getResourceKey()' function.
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  3. Implementing optional arguments to FHIR functions. 

    Implementing `join()` function.
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  4. Implemented 'not()', 'empty()' and 'exists()' for non-resource paths.

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Commits on Sep 27, 2023

  1. Adding support for empty results in FhirView test cases and correctin… 

    …g deserialization of WhereClause.
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  2. Added direct traversal to nested choice element by name (e.g. `valueI… 

    …nteger`)
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Commits on Sep 28, 2023

  1. Fixing the fn_rkeys test.

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  2. Updating the sql-on-fire pointer

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  3. Implementing 'expectError' and 'expectCount' for FhirViewTests. 

    Implementing 'collection' and singular value selection semantics for DirectSelection.
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Commits on Sep 29, 2023

  1. Re-implementing type specifiers as special cases of FhirPath expressi… 

    …ons.

Implementing 'r-keys' functions: getReferenceKey() and getResourceKey().
Cleaning up our extended FhirView tests.
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Commits on Oct 3, 2023

  1. Updating the sql-on-fhir pointer after merging changes from the main … 

    …repostory.
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  2. Replacing 'where()' with 'exists()' in FHIRView where clauses.

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  3. Adding support for FHIR operations on singular ResoureceCollections, … 

    …to allow FHIRView paths like: forEach = 'where(gender='male').name,
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  4. Updating test cases for 'forEach' removing the null rows from the fin… 

    …al result.
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  5. Refactoring: Cleaning up column functions tests.

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  6. Refactoring: Removing object implementation of FHIRPath functions imp… 

    …lemented as functions in (StandardFunctions).
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  7. Refactoring: Reimplementing boolean test functions (anyTrue/False all… 

    …True/False) as functions.
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Commits on Oct 6, 2023

  1. POC: Implementation of internal FHIRView primitives.

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Commits on Oct 9, 2023

  1. POC: Cleanup and refactoring internal view primitives.

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Commits on Oct 11, 2023

  1. POC: Implementation of aggregation 

    POC: Implementation of ExtractQueryExecutor
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Commits on Oct 12, 2023

  1. POC: Implementation of AggregationView

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  2. POC: Implementation of AggregateQueryExecutor

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  3. POC: Added filter implementation for ExtractView 

    Reverted changes in ExtractQueryTests results to match current input resources.
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  4. POC: Implemented aliases for extract views.

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Commits on Oct 13, 2023

  1. POC: Initial implementation of reverseResolve 

    Refactoring: Making DatasetResult generic with regard to the result type.
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  2. POC: Added initial implementation grouping labels and drill down expr… 

    …essions.
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Commits on Oct 17, 2023

  1. Refactoring: Reimplemneting FhirViews using the ExtractView.

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Commits on Dec 7, 2023

  1. Terminology: Reimplementing 'display()' with columnar approach.

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  2. Terminology: Reimplementing 'designation()' with columnar approach.

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  3. Terminology: Reimplementing 'memberOf()' with columnar approach.

    @piotrszul
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  4. Terminology: Reimplementing 'subsumes()' and 'subsumedBy()' with colu… 

    …mnar approach.
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  5. Terminology: Reimplementing 'translate()' with columnar approach.

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  6. Terminology: Reimplementing 'property()' with columnar approach.

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  7. Refactoring: Implementing FHIRPahts for boolean, Quantity and Coding … 

    …literals.
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  8. Adding impure results to Extract view filtrs.

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  9. Implementing support for ExtractResultType in ExtractView. 

    Refactoring the internals of ExtractView execution to provide assess to result Collections.
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  10. Fixing small issues in extract.

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  11. Refactoring: Basing collections on ColumnCtx.

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Commits on Dec 10, 2023

  1. Fixing issues after rebase.

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Commits on Dec 11, 2023

  1. WIP: Basic reverse resolve implementation

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Commits on Dec 12, 2023

  1. Refactoring: Removing type parametrization from FhirPath

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  2. Implemented reverseResolve join resolver.

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  3. Implemented basic dependency resolver.

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Commits on Dec 14, 2023

  1. Implemented basic reverse join resolver aware of column dependencies … 

    …on joined resources.
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  2. Refactoring: making DataSource the dependence of FhirPathExecutor.

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  3. Refactoring: Reimplemented ParserTest with the new approach.

    @piotrszul
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  4. Fixing issues with ParserTest.

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Commits on Dec 18, 2023

  1. Adding resolve join() root.

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Commits on Jan 4, 2024

  1. Creating versions of FhirpathExecutor for single and muliple resources.

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Commits on Jan 6, 2024

  1. Reimplementing View execution on FHIRpath executor.

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  2. Fixing small issues to make the Compliance view tests pass.

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Commits on Jan 9, 2024

  1. Updating the SQLViews to the most recent specification including the … 

    …tests.
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  2. Making the SQL View test insensitive to the order of rows in the result.

    @piotrszul
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  3. Adding a python example for a FHIR View API.

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Commits on Jan 11, 2024

  1. Merge branch 'main' into issue/1759 

    # Conflicts:
#	.gitignore
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  2. Update version to 6.5.0-SNAPSHOT

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  3. Adding support for the empty collection literal '{}'

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  4. Improving the implementation of 'join()' to accept a singular string … 

    …collection rather then a string literal.
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Commits on Jan 15, 2024

  1. Update resourceKey and referenceKey function tests

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  2. Update where function and element tests

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  3. Add ability to disable view test

    @johngrimes
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  4. Update union test

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  5. Update unnesting tests

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  6. Add constant test

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Commits on Jan 19, 2024

  1. Update sql-on-fhir to point to aehrc union branch

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  2. Delete redundant implementation-specific union test

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Commits on Jan 23, 2024

  1. Initial version of the StructProduct operation.

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  2. Adding a function to generate optional from lists (empty optional for… 

    … empty list).
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  3. WIP: Adding new column based view implementation.

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  4. Updated pointer to sql-on-fhir module to

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Commits on Jan 25, 2024

  1. Implemented eval() for StructProduct expression.

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Commits on Feb 3, 2024

  1. Improve type specifier namespace and search semantics

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  2. Move static inner classes out of MixedCollection

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  3. Move MixedCollection and subclasses into package

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  4. Move NullCtx out of ColumnCtx

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  5. Make ofType work on any type of collection

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  6. Change ofType test to use FHIR types 

    The ofType function in the FHIR context should only accept FHIR types, see: https://hl7.org/fhir/fhirpath.html#functions
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Commits on Feb 5, 2024

  1. Fix ForEachSelectionX to support nested forEach statements

    @johngrimes
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  2. Add test for nested forEachOrNull

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  3. Fix expression for forEachOrNull

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Commits on Feb 12, 2024

  1. Apply Prettier formatting to test files

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Commits on Feb 13, 2024

  1. Change path to look for SQL on FHIR tests

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  2. Print out test definition if there is a parsing error

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  3. Add logging when no expectation found for test

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  4. Log names of tests as they are run

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Commits on Feb 20, 2024

  1. Initial implementation of boundary functions

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  2. Add comments and improve readability of traversal code within Collection

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  3. Add comments to BaseNodeDefinition traversal code

    @johngrimes
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  4. Rename ColumnCtx to ColumnRepresentation

    @johngrimes
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  5. Remove unused base vectorize implementation

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Commits on Feb 21, 2024

  1. Rename classes and add Javadoc

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  2. Rename getCtx to getColumn

    @johngrimes
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  3. Add DecimalRepresentation

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Commits on Feb 22, 2024

  1. Get low boundary test for decimal test passing 

    Includes:

- Adding a dataset comparison assertion that is insensitive to column ordering
- Fixing return type of UDF
- Fix handling of decimal literals
    @johngrimes
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  2. Get high decimal boundary test passing

    @johngrimes
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  3. Get high and low boundary tests for date times working

    @johngrimes
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  4. Get high and low boundary tests for dates working

    @johngrimes
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  5. Get high and low boundary tests for times working

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  6. Improve error message for unsupported types in boundary functions

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Commits on Feb 23, 2024

  1. Fix problem with unnesting on traversal

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  2. Handle assertion of empty result

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  3. Point sql-on-fhir to AEHRC version

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  1. Implement indexer expression

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  1. Remove unnecessary configuration to JSON reader

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  1. Fix union concatenation when some results are singular

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  1. Rename context classes

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  2. Point sql-on-fhir to origin

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Commits on Mar 5, 2024

  1. Get constant tests passing

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  2. Added Extension for JSON test report generation to `FhirViewComplianc… 

    …eTest`
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Commits on Mar 7, 2024

  1. Point sql-on-fhir to origin

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  2. Fix issues with Javadoc

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Commits on Mar 10, 2024

  1. Add ability to pass raw JSON to Python view method

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  1. Add upload of SQL on FHIR test report to S3

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  2. Update pointer to SQL on FHIR spec

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  1. Hook ExtractQueryExecutor up to existing query machinery

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  2. Get the first few ExtractQueryTests passing

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Commits on Mar 25, 2024

  1. Fix Python view method for non-JSON usage

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  2. Rename ForEachSelect to ColumnSelect

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  3. Fix inspections in FhirViewExecutor

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  4. Improve documentation within FhirViewExecutor

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Commits on Mar 26, 2024

  1. Refactor projection abstraction and get most view tests passing

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  2. Update comments within FhirViewExecutor

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  1. Add additional stub method to ExtractQueryExecutor

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Commits on Mar 28, 2024

  1. Fix handling of repeating elements in column evaluation

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Commits on Apr 7, 2024

  1. Remove unnecessary aliasing from ValueFunctions.ifArray and unnest

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Commits on Apr 9, 2024

  1. Add column type checking

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  2. Cast all numeric types in expected and actual results to decimal 

    This allows for consistent comparison that is blind to the differences between results and expectations parsed from JSON.
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Commits on Apr 12, 2024

  1. Fix problem with integer values in view definition being accepted as … 

    …strings
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Commits on Apr 17, 2024

  1. Add support for expectColumns assertions in view tests

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Commits on Apr 18, 2024

  1. Add basic implementation of ExtractQueryExecutor based on Projection

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  2. Handle grouping of prefixes within extract query planning

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  3. Add support for ProjectionConstraint to ExtractQueryExecutor

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  4. Expand ExtractTest#simple and make assertions

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Commits on May 29, 2024

  1. Update version to 7.1.0-SNAPSHOT

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Commits on Jun 10, 2024

  1. Remove Task from unsupported resources

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  2. Remove dependency on hive-serde

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  3. Ignore lib/python/bin directory

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Commits on Jun 19, 2024

  1. Normalize date times before comparison

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  2. Normalize times before comparison

    @johngrimes
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  3. Fix problem with conversion of timestamp to milliseconds

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Commits on Jun 20, 2024

  1. Combine index and purpose pages

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Commits on Jun 25, 2024

  1. Update boundary functions implementation

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  2. Fix signature and docs for decimal boundary UDFs

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  3. Update date boundary UDFs to use precision parameter

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  4. Update datetime boundary UDFs to use precision parameter

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  5. Update time boundary UDFs to use precision parameter

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  6. Get SQL on FHIR constant tests passing

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Commits on Jun 26, 2024

  1. Add complex types to all open types option in encoders

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  2. Move all open types out to constant

    @johngrimes
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  3. Remove explain on every view test

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  4. Use boundary functions to normalize datetimes and times in tests

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  5. Add more decimal boundary tests

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Commits on Jun 28, 2024

  1. Add missing Javadoc to FhirViewExecutor

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  2. Add missing Javadoc to GroupingSelection

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  3. Update SQL on FHIR pointer to AEHRC merged master

    @johngrimes
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  4. Add missing Javadoc to ColumnSelection

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  5. Extract building of collections iterator out to a separate method

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  6. Add missing Javadoc to UnionSelection

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  7. Add missing Javadoc to UnnestingSelection

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  8. Add missing Javadoc to ProjectionClause

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  9. Remove unused vectorize overload within ColumnRepresentation

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  10. Remove unused explode and explodeOuter methods from ColumnRepresentation

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  11. Improve documentation for ColumnRepresentation.transform

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  12. Add comments to ArrayOrSingularRepresentation

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  13. Rename ArrayOrSingularRepresentation to DefaultRepresentation

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  14. Add documentation to DecimalRepresentation

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  15. Add documentation to BinaryRepresentation

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  16. Add static import within NullRepresentation

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  17. Remove unused GetClassFromContained class from Expressions.scala

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  18. Add more documentation to Expressions.scala

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  19. Inline Collection.getExtensionMap

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  20. Remove out of date backport comment on Expressions.scala

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  21. Add documentation to Collection and remove unused methods

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  22. Add documentation to BooleanCollection and remove BooleanCollection.f… 

    …alseCollection
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  23. Make decision on Coding and remove comment from CodingCollection.from… 

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  24. Make internal build method in DateCollection private

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  25. Fix documentation within DateTimeCollection

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  26. Add Javadoc to DecimalCollection

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  27. Add Javadoc to IntegerCollection

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  28. Fix Javadoc within QuantityCollection

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  29. Fix Javadoc to ResourceCollection

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Commits on Jul 1, 2024

  1. Fix Javadoc within StringCollection

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  2. Change TimeCollection constructor to protected

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  3. Add Javadoc to MixedResourceCollection

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  4. Add documentation to function registry classes

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  5. Remove unused Arguments class

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  6. Add documentation to BoundaryFunctions

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  7. Remove unused MixedCollection.buildResource

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  8. Add documentation to CollectionExpression

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  9. Rename FhirViewFunctions to JoinKeyFunctions

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  10. Refactor implementation of getResourceKey and getReferenceKey

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  11. Fix Javadoc within NamedFunction and remove unused method

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  12. Remove StandardFunctions.reverseResolve

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  13. Rename FhirpathFunction to FhirPathFunction

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  14. Update SQL on FHIR to point back to origin master

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  15. Document and rename existence functions

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  16. Update documentation for JoinKeyFunctions

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  17. Extract and document filtering and projection functions

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  18. Move empty and exists to ExistenceFunctions and document

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  19. Extract and document extension function within FhirFunctions

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  20. Move extension constants to FhirFunctions

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  21. Extract join function to StringFunctions and document

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  22. Extract first function to SubsettingFunctions and document

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  23. Extract count function to ExistenceFunctions and document

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  24. Move isTypeSpecifierFunction to InvocationVisitor

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  25. Move toString to ConversionFunctions and document

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  26. Update StaticFunctionRegistry

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Commits on Jul 2, 2024

  1. Improve documentation in TerminologyFunctions

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  2. Improve documentation for TypeSpecifier

    @johngrimes
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  3. Improve documentation for ExtractQueryExecutor

    @johngrimes
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  4. Remove unused method StorageConfiguration.forDatabase

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  5. Improve documentation for annotations

    @johngrimes
    johngrimes committed Jul 2, 2024
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  6. Rename comparator classes

    @johngrimes
    johngrimes committed Jul 2, 2024
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  7. Move comparison classes into the operator package

    @johngrimes
    johngrimes committed Jul 2, 2024
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  8. Remove unused tests, will replace with a new testing regime

    @johngrimes
    johngrimes committed Jul 2, 2024
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  9. Remove unused classes and move annotations into theme packages

    @johngrimes
    johngrimes committed Jul 2, 2024
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Commits on Jul 4, 2024

  1. Refactor and document MethodDefinedFunction and FunctionParameterReso… 

    …lver
    @johngrimes
    johngrimes committed Jul 4, 2024
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  2. Refactor and document MethodDefinedOperator

    @johngrimes
    johngrimes committed Jul 4, 2024
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  3. Move function providers into their own package

    @johngrimes
    johngrimes committed Jul 4, 2024
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  4. Refactor and document collection operations

    @johngrimes
    johngrimes committed Jul 4, 2024
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Commits on Jul 8, 2024

  1. Go back to using the FHIR core boundary functions implementation

    @johngrimes
    johngrimes committed Jul 8, 2024
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  2. Update boundary function tests and get passing

    @johngrimes
    johngrimes committed Jul 8, 2024
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  3. Update boundary function tests and get passing

    @johngrimes
    johngrimes committed Jul 8, 2024
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  4. Merge remote-tracking branch 'origin/issue/1759' into issue/1759 

    # Conflicts:
#	fhirpath/src/main/java/au/csiro/pathling/sql/boundary/DecimalBoundaryFunction.java
    @johngrimes
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  5. Replace javax.annotation.Nonnull with jakarta.annotation.Nonnull

    @johngrimes
    johngrimes committed Jul 8, 2024
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  6. Replace javax.annotation.Nullable with jakarta.annotation.Nullable

    @johngrimes
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  7. Merge branch 'refs/heads/main' into issue/1759 

    # Conflicts:
#	deployment/helm/pom.xml
#	encoders/pom.xml
#	encoders/src/main/java/au/csiro/pathling/config/EncodingConfiguration.java
#	fhir-server/pom.xml
#	fhir-server/src/main/java/au/csiro/pathling/aggregate/AggregateExecutor.java
#	fhir-server/src/main/java/au/csiro/pathling/async/AsyncAspect.java
#	fhir-server/src/main/java/au/csiro/pathling/async/JobProvider.java
#	fhir-server/src/main/java/au/csiro/pathling/caching/EntityTagInterceptor.java
#	fhir-server/src/main/java/au/csiro/pathling/config/AuthorizationConfiguration.java
#	fhir-server/src/main/java/au/csiro/pathling/config/ServerConfiguration.java
#	fhir-server/src/main/java/au/csiro/pathling/errors/DiagnosticContext.java
#	fhir-server/src/main/java/au/csiro/pathling/errors/ErrorHandlingInterceptor.java
#	fhir-server/src/main/java/au/csiro/pathling/errors/ErrorReportingInterceptor.java
#	fhir-server/src/main/java/au/csiro/pathling/extract/ResultProvider.java
#	fhir-server/src/main/java/au/csiro/pathling/fhir/ConformanceProvider.java
#	fhir-server/src/main/java/au/csiro/pathling/fhir/FhirServer.java
#	fhir-server/src/main/java/au/csiro/pathling/fhir/SmartConfigurationInterceptor.java
#	fhir-server/src/main/java/au/csiro/pathling/search/SearchExecutor.java
#	fhir-server/src/main/java/au/csiro/pathling/security/SecurityConfiguration.java
#	fhir-server/src/test/java/au/csiro/pathling/aggregate/DrillDownBuilderTest.java
#	fhir-server/src/test/java/au/csiro/pathling/extract/ExtractRequestBuilder.java
#	fhir-server/src/test/java/au/csiro/pathling/fhir/EntityTagInterceptorTest.java
#	fhir-server/src/test/java/au/csiro/pathling/fhirpath/parser/ParserTest.java
#	fhir-server/src/test/java/au/csiro/pathling/jmh/SpringBootJmhContext.java
#	fhir-server/src/test/java/au/csiro/pathling/test/IntegrationTestDependencies.java
#	fhirpath/pom.xml
#	fhirpath/src/main/java/au/csiro/pathling/QueryExecutor.java
#	fhirpath/src/main/java/au/csiro/pathling/QueryHelpers.java
#	fhirpath/src/main/java/au/csiro/pathling/aggregate/AggregateQueryExecutor.java
#	fhirpath/src/main/java/au/csiro/pathling/aggregate/AggregateRequest.java
#	fhirpath/src/main/java/au/csiro/pathling/config/StorageConfiguration.java
#	fhirpath/src/main/java/au/csiro/pathling/extract/ExtractQueryExecutor.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/FhirPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/Materializable.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/NonLiteralPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/Numeric.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/Referrer.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/ResourcePath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/Temporal.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/TerminologyUtils.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/UntypedResourcePath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/comparison/CodingComparator.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/definition/ResourceDefinition.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/element/BooleanPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/element/CodingPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/element/DatePath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/element/DateTimePath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/element/DecimalPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/element/ElementDefinition.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/element/ElementPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/element/ExtensionPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/element/IntegerPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/element/QuantityPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/element/ReferenceExtensionDefinition.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/element/ReferencePath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/element/StringPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/element/TimePath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/AggregateFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/Arguments.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/BooleansTestFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/CountFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/EmptyFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/ExistsFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/ExtensionFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/FirstFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/IifFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/NamedFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/NamedFunctionInput.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/NotFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/OfTypeFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/ResolveFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/ReverseResolveFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/SumFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/UntilFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/WhereFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/terminology/DesignationFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/terminology/DisplayFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/terminology/MemberOfFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/terminology/PropertyFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/terminology/SubsumesFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/function/terminology/TranslateFunction.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/literal/BooleanLiteralPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/literal/CodingLiteralPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/literal/DateLiteralPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/literal/DateTimeLiteralPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/literal/DecimalLiteralPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/literal/IntegerLiteralPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/literal/LiteralPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/literal/NullLiteralPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/literal/QuantityLiteralPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/literal/StringLiteralPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/literal/TimeLiteralPath.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/operator/BinaryOperator.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/operator/BinaryOperatorInput.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/operator/BooleanOperator.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/operator/CombineOperator.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/operator/Comparable.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/operator/ComparisonOperator.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/operator/DateArithmeticOperator.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/operator/MathOperator.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/operator/MembershipOperator.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/operator/Operator.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/operator/PathTraversalInput.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/operator/PathTraversalOperator.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/parser/InvocationVisitor.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/parser/LiteralTermVisitor.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/parser/ParserContext.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/parser/TermVisitor.java
#	fhirpath/src/main/java/au/csiro/pathling/fhirpath/parser/Visitor.java
#	fhirpath/src/test/java/au/csiro/pathling/UnitTestDependencies.java
#	fhirpath/src/test/java/au/csiro/pathling/fhirpath/CanBeCombinedWithTest.java
#	fhirpath/src/test/java/au/csiro/pathling/fhirpath/function/BooleansTestFunctionTest.java
#	fhirpath/src/test/java/au/csiro/pathling/fhirpath/function/ResolveFunctionTest.java
#	fhirpath/src/test/java/au/csiro/pathling/fhirpath/function/UntilFunctionTest.java
#	fhirpath/src/test/java/au/csiro/pathling/fhirpath/function/terminology/DesignationFunctionTest.java
#	fhirpath/src/test/java/au/csiro/pathling/fhirpath/function/terminology/PropertyFunctionTest.java
#	fhirpath/src/test/java/au/csiro/pathling/fhirpath/function/terminology/SubsumesFunctionTest.java
#	fhirpath/src/test/java/au/csiro/pathling/fhirpath/function/terminology/TranslateFunctionTest.java
#	fhirpath/src/test/java/au/csiro/pathling/fhirpath/operator/ComparisonOperatorTest.java
#	fhirpath/src/test/java/au/csiro/pathling/fhirpath/operator/DateArithmeticTest.java
#	fhirpath/src/test/java/au/csiro/pathling/fhirpath/operator/MathOperatorQuantityTest.java
#	fhirpath/src/test/java/au/csiro/pathling/fhirpath/operator/MathOperatorTest.java
#	fhirpath/src/test/java/au/csiro/pathling/fhirpath/operator/QuantityOperatorsPrecisionTest.java
#	fhirpath/src/test/java/au/csiro/pathling/test/assertions/Assertions.java
#	fhirpath/src/test/java/au/csiro/pathling/test/assertions/BaseFhirPathAssertion.java
#	fhirpath/src/test/java/au/csiro/pathling/test/assertions/ElementPathAssertion.java
#	fhirpath/src/test/java/au/csiro/pathling/test/assertions/FhirPathAssertion.java
#	fhirpath/src/test/java/au/csiro/pathling/test/assertions/LiteralPathAssertion.java
#	fhirpath/src/test/java/au/csiro/pathling/test/assertions/ResourcePathAssertion.java
#	fhirpath/src/test/java/au/csiro/pathling/test/builders/ElementPathBuilder.java
#	fhirpath/src/test/java/au/csiro/pathling/test/builders/ParserContextBuilder.java
#	fhirpath/src/test/java/au/csiro/pathling/test/builders/ResourcePathBuilder.java
#	fhirpath/src/test/java/au/csiro/pathling/test/builders/UntypedResourcePathBuilder.java
#	fhirpath/src/test/java/au/csiro/pathling/test/helpers/SparkHelpers.java
#	lib/R/pom.xml
#	lib/import/pom.xml
#	lib/js/pom.xml
#	lib/python/Dockerfile
#	lib/python/pom.xml
#	library-api/pom.xml
#	library-api/src/main/java/au/csiro/pathling/library/PathlingContext.java
#	library-api/src/main/java/au/csiro/pathling/library/io/sink/DataSinkBuilder.java
#	library-api/src/main/java/au/csiro/pathling/library/io/source/AbstractSource.java
#	library-api/src/main/java/au/csiro/pathling/library/io/source/QueryableDataSource.java
#	library-api/src/main/java/au/csiro/pathling/library/query/QueryDispatcher.java
#	library-api/src/test/java/au/csiro/pathling/library/PathlingContextTest.java
#	library-runtime/pom.xml
#	pom.xml
#	site/pom.xml
#	terminology/pom.xml
#	terminology/src/main/java/au/csiro/pathling/config/HttpClientCachingConfiguration.java
#	terminology/src/main/java/au/csiro/pathling/config/HttpClientConfiguration.java
#	terminology/src/main/java/au/csiro/pathling/config/TerminologyAuthConfiguration.java
#	terminology/src/main/java/au/csiro/pathling/config/TerminologyConfiguration.java
#	terminology/src/main/java/au/csiro/pathling/terminology/DefaultTerminologyService.java
#	terminology/src/main/java/au/csiro/pathling/terminology/TerminologyServiceFactory.java
#	terminology/src/main/java/au/csiro/pathling/terminology/caching/CachingTerminologyService.java
#	terminology/src/test/java/au/csiro/pathling/test/helpers/TerminologyServiceHelpers.java
#	utilities/pom.xml
#	utilities/src/main/java/au/csiro/pathling/utilities/Lists.java
#	utilities/src/main/java/au/csiro/pathling/validation/ValidationUtils.java
    @johngrimes
    johngrimes committed Jul 8, 2024
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Commits on Jul 15, 2024

  1. Add serial annotations to boundary UDFs

    @johngrimes
    johngrimes committed Jul 15, 2024
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  2. Update implementation and tests to match discussion in Zulip 

    https://chat.fhir.org/#narrow/stream/179266-fhirpath/topic/Boundary.20functions
    @johngrimes
    johngrimes committed Jul 15, 2024
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  3. Remove unnecessary constant and make isHigh parameter final

    @johngrimes
    johngrimes committed Jul 15, 2024
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  4. Add more comments to boundary function implementation

    @johngrimes
    johngrimes committed Jul 15, 2024
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Commits on Jul 16, 2024

  1. Update boundary functions implementation to use significant figures

    @johngrimes
    johngrimes committed Jul 16, 2024
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Commits on Jul 22, 2024

  1. Update DecimalBoundaryFunction to account for half-up rounding

    @johngrimes
    johngrimes committed Jul 22, 2024
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  2. Update pointer to SQL on FHIR master

    @johngrimes
    johngrimes committed Jul 22, 2024
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Commits on Aug 6, 2024

  1. Fix imports within DataSinkBuilder

    @johngrimes
    johngrimes committed Aug 6, 2024
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Commits on Oct 29, 2024

  1. Fix TerminologyFunctions import

    @johngrimes
    johngrimes committed Oct 29, 2024
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Commits on Nov 14, 2024

  1. Update SQL on FHIR pointer

    @johngrimes
    johngrimes committed Nov 14, 2024
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Commits on Nov 15, 2024

  1. Fixing encoding tests (synchronizing unsupported resource types) and … 

    …fixing import to make the project compile (moslty javax -> jakarta migration).
    @piotrszul
    piotrszul committed Nov 15, 2024
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Commits on Nov 18, 2024

  1. Adding default values of pathling.strorage properties for test relyin… 

    …g on 'test-data'
    @piotrszul
    piotrszul committed Nov 18, 2024
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  2. Adding Fhirepath test to explore resolve/reverseResolve issues.

    @piotrszul
    piotrszul committed Nov 18, 2024
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Commits on Nov 19, 2024

  1. Adding Fhirpath tests for resolve() ManyToOne an ManyToMany

    @piotrszul
    piotrszul committed Nov 19, 2024
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  2. Refactoring: Extracting the simple reverseResolve functionality.

    @piotrszul
    piotrszul committed Nov 19, 2024
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Commits on Nov 20, 2024

  1. Refactoring: Adding reverseResolve() decomposition from a fhirPath.

    @piotrszul
    piotrszul committed Nov 20, 2024
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  2. Adding manual support for reverseResolve with leading expression. 

    Adding (disabled) test cases for infix aggregation in reverseResolve.
    @piotrszul
    piotrszul committed Nov 20, 2024
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  3. Adding support for reverserResolve with leading (where) expressions.

    @piotrszul
    piotrszul committed Nov 20, 2024
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Commits on Nov 21, 2024

  1. Adding support for mulitple aggregations in the in the reverseResolve… 

    … sufix.
    @piotrszul
    piotrszul committed Nov 21, 2024
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  2. Refactoring: cleaning up the implementation of reverseResolve aggrega… 

    …te evaluation.
    @piotrszul
    piotrszul committed Nov 21, 2024
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  3. Updating reverseResolve() test with more data instances.

    @piotrszul
    piotrszul committed Nov 21, 2024
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  4. Adding test cased for nested reverseResolve and multiple reverse reso… 

    …lves in an operator.
    @piotrszul
    piotrszul committed Nov 21, 2024
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