From 2629f6beadc5666bd85feb1e18ab26a424cc895a Mon Sep 17 00:00:00 2001
From: bramvandesande <vandesande.bram@gmail.com>
Date: Thu, 20 Dec 2018 11:05:05 +0100
Subject: [PATCH] CLI: BugFix for issue
 https://github.com/aertslab/pySCENIC/issues/39

---
 src/pyscenic/cli/pyscenic.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/pyscenic/cli/pyscenic.py b/src/pyscenic/cli/pyscenic.py
index 61a29c7..f6e2efe 100644
--- a/src/pyscenic/cli/pyscenic.py
+++ b/src/pyscenic/cli/pyscenic.py
@@ -121,7 +121,7 @@ def prune_targets_command(args):
     extension = os.path.splitext(args.module_fname.name)[1].lower()
     if extension in {'.csv', '.tsv'}:
         LOGGER.info("Creating modules.")
-        modules = adjacencies2modules(args.module_fname.name)
+        modules = adjacencies2modules(args)
     else:
         LOGGER.info("Loading modules.")
         try: