From ddc555a49285a438ddb420c5e8db31356bb8aabd Mon Sep 17 00:00:00 2001 From: Bindi Pankhudi Date: Thu, 15 Feb 2024 14:07:05 -0800 Subject: [PATCH] AirbyteLib: Fix no-such-table-error (#35311) Co-authored-by: Bindi Pankhudi Co-authored-by: Aaron Steers --- airbyte-lib/airbyte_lib/_processors.py | 17 +- airbyte-lib/examples/run_github.py | 4 +- airbyte-lib/poetry.lock | 439 +++++++++--------- airbyte-lib/pyproject.toml | 2 + .../fixtures/source-test/source_test/run.py | 15 + .../test_source_test_fixture.py | 93 ++-- 6 files changed, 324 insertions(+), 246 deletions(-) diff --git a/airbyte-lib/airbyte_lib/_processors.py b/airbyte-lib/airbyte_lib/_processors.py index 1b51e6df8ee7..e879d22214e0 100644 --- a/airbyte-lib/airbyte_lib/_processors.py +++ b/airbyte-lib/airbyte_lib/_processors.py @@ -45,6 +45,7 @@ DEFAULT_BATCH_SIZE = 10_000 +DEBUG_MODE = False # Set to True to enable additional debug logging. class BatchHandle: @@ -60,6 +61,7 @@ class RecordProcessor(abc.ABC): config_class: type[CacheConfigBase] skip_finalize_step: bool = False + _expected_streams: set[str] def __init__( self, @@ -109,6 +111,7 @@ def register_source( incoming_source_catalog=incoming_source_catalog, incoming_stream_names=stream_names, ) + self._expected_streams = stream_names @property def _streams_with_data(self) -> set[str]: @@ -203,12 +206,18 @@ def process_airbyte_messages( # Type.LOG, Type.TRACE, Type.CONTROL, etc. pass + # Add empty streams to the dictionary, so we create a destination table for it + for stream_name in self._expected_streams: + if stream_name not in stream_batches: + if DEBUG_MODE: + print(f"Stream {stream_name} has no data") + stream_batches[stream_name] = [] + # We are at the end of the stream. Process whatever else is queued. for stream_name, stream_batch in stream_batches.items(): - if stream_batch: - record_batch = pa.Table.from_pylist(stream_batch) - self._process_batch(stream_name, record_batch) - progress.log_batch_written(stream_name, len(stream_batch)) + record_batch = pa.Table.from_pylist(stream_batch) + self._process_batch(stream_name, record_batch) + progress.log_batch_written(stream_name, len(stream_batch)) # Finalize any pending batches for stream_name in list(self._pending_batches.keys()): diff --git a/airbyte-lib/examples/run_github.py b/airbyte-lib/examples/run_github.py index 3faf22b60e19..253e1275a541 100644 --- a/airbyte-lib/examples/run_github.py +++ b/airbyte-lib/examples/run_github.py @@ -19,12 +19,12 @@ source = ab.get_source("source-github") source.set_config( { - "repositories": ["airbytehq/quickstarts"], + "repositories": ["airbytehq/airbyte-lib-private-beta"], "credentials": {"personal_access_token": GITHUB_TOKEN}, } ) source.check() -source.select_streams(["issues", "pull_requests", "commits", "collaborators"]) +source.select_streams(["issues", "pull_requests", "commits", "collaborators", "deployments"]) result = source.read(cache=ab.new_local_cache("github")) print(result.processed_records) diff --git a/airbyte-lib/poetry.lock b/airbyte-lib/poetry.lock index b4ca0726238c..86d14143870c 100644 --- a/airbyte-lib/poetry.lock +++ b/airbyte-lib/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. [[package]] name = "airbyte-cdk" @@ -53,13 +53,13 @@ pydantic = ">=1.9.2,<2.0.0" [[package]] name = "airbyte-source-faker" -version = "6.0.0" +version = "6.0.1" description = "Source implementation for fake but realistic looking data." optional = false python-versions = "*" files = [ - {file = "airbyte-source-faker-6.0.0.tar.gz", hash = "sha256:60c68980527b66f1ffa31e4e13c406233b6d9cfcb2a6acc23ebd827cd2532181"}, - {file = "airbyte_source_faker-6.0.0-py3-none-any.whl", hash = "sha256:d92265c5be31a8d2ac66e7ed40cbe134d62acbb63adbc05789697cf64784e5b7"}, + {file = "airbyte-source-faker-6.0.1.tar.gz", hash = "sha256:8173a48551fbfe0eb6e9c331fec650fa490f283736aef0d58e2f14e55f8cf90a"}, + {file = "airbyte_source_faker-6.0.1-py3-none-any.whl", hash = "sha256:622cd123589218cffe69755727addfe85873d7563002cf8d5f949586604e0d9f"}, ] [package.dependencies] @@ -438,50 +438,58 @@ files = [ [[package]] name = "duckdb" -version = "0.9.2" -description = "DuckDB embedded database" +version = "0.10.0" 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b/airbyte-lib/tests/integration_tests/fixtures/source-test/source_test/run.py @@ -35,6 +35,21 @@ }, }, }, + { + "name": "always-empty-stream", + "description": "This stream always emits zero records, to test handling of empty datasets.", + "supported_sync_modes": ["full_refresh", "incremental"], + "source_defined_cursor": False, + "json_schema": { + "$schema": "http://json-schema.org/draft-07/schema#", + "type": "object", + "properties": { + "column1": {"type": "string"}, + "column2": {"type": "number"}, + "empty_column": {"type": "string"}, + }, + }, + }, ] }, } diff --git a/airbyte-lib/tests/integration_tests/test_source_test_fixture.py b/airbyte-lib/tests/integration_tests/test_source_test_fixture.py index dadc7b12da72..5e3a05e683a9 100644 --- a/airbyte-lib/tests/integration_tests/test_source_test_fixture.py +++ b/airbyte-lib/tests/integration_tests/test_source_test_fixture.py @@ -55,6 +55,7 @@ def expected_test_stream_data() -> dict[str, list[dict[str, str | int]]]: "stream2": [ {"column1": "value1", "column2": 1, "empty_column": None}, ], + "always-empty-stream": [], } def test_registry_get(): @@ -195,16 +196,20 @@ def test_file_write_and_cleanup() -> None: _ = source.read(cache_wo_cleanup) assert len(list(Path(temp_dir_1).glob("*.parquet"))) == 0, "Expected files to be cleaned up" - assert len(list(Path(temp_dir_2).glob("*.parquet"))) == 2, "Expected files to exist" + assert len(list(Path(temp_dir_2).glob("*.parquet"))) == 3, "Expected files to exist" def assert_cache_data(expected_test_stream_data: dict[str, list[dict[str, str | int]]], cache: SQLCacheBase, streams: list[str] = None): for stream_name in streams or expected_test_stream_data.keys(): - pd.testing.assert_frame_equal( - cache[stream_name].to_pandas(), - pd.DataFrame(expected_test_stream_data[stream_name]), - check_dtype=False, - ) + if len(cache[stream_name]) > 0: + pd.testing.assert_frame_equal( + cache[stream_name].to_pandas(), + pd.DataFrame(expected_test_stream_data[stream_name]), + check_dtype=False, + ) + else: + # stream is empty + assert len(expected_test_stream_data[stream_name]) == 0 # validate that the cache doesn't contain any other streams if streams: @@ -227,12 +232,13 @@ def test_read_result_mapping(): source = ab.get_source("source-test", config={"apiKey": "test"}) source.select_all_streams() result: ReadResult = source.read(ab.new_local_cache()) - assert len(result) == 2 + assert len(result) == 3 assert isinstance(result, Mapping) assert "stream1" in result assert "stream2" in result + assert "always-empty-stream" in result assert "stream3" not in result - assert result.keys() == {"stream1", "stream2"} + assert result.keys() == {"stream1", "stream2", "always-empty-stream"} def test_dataset_list_and_len(expected_test_stream_data): @@ -251,8 +257,9 @@ def test_dataset_list_and_len(expected_test_stream_data): assert isinstance(result, Mapping) assert "stream1" in result assert "stream2" in result + assert "always-empty-stream" in result assert "stream3" not in result - assert result.keys() == {"stream1", "stream2"} + assert result.keys() == {"stream1", "stream2", "always-empty-stream"} def test_read_from_cache(expected_test_stream_data: dict[str, list[dict[str, str | int]]]): @@ -330,11 +337,17 @@ def test_merge_streams_in_cache(expected_test_stream_data: dict[str, list[dict[s source.select_streams(["stream2"]) result = source.read(second_cache) + third_cache = ab.new_local_cache(cache_name) + source.select_streams(["always-empty-stream"]) + result = source.read(third_cache) + # Assert that the read result only contains stream2 with pytest.raises(KeyError): result["stream1"] + with pytest.raises(KeyError): + result["stream2"] - assert_cache_data(expected_test_stream_data, second_cache) + assert_cache_data(expected_test_stream_data, third_cache) def test_read_result_as_list(expected_test_stream_data: dict[str, list[dict[str, str | int]]]): @@ -346,8 +359,10 @@ def test_read_result_as_list(expected_test_stream_data: dict[str, list[dict[str, result: ReadResult = source.read(cache) stream_1_list = list(result["stream1"]) stream_2_list = list(result["stream2"]) + always_empty_stream_list = list(result["always-empty-stream"]) assert stream_1_list == expected_test_stream_data["stream1"] assert stream_2_list == expected_test_stream_data["stream2"] + assert always_empty_stream_list == expected_test_stream_data["always-empty-stream"] def test_get_records_result_as_list(expected_test_stream_data: dict[str, list[dict[str, str | int]]]): @@ -356,8 +371,10 @@ def test_get_records_result_as_list(expected_test_stream_data: dict[str, list[di stream_1_list = list(source.get_records("stream1")) stream_2_list = list(source.get_records("stream2")) + always_empty_stream_list = list(source.get_records("always-empty-stream")) assert stream_1_list == expected_test_stream_data["stream1"] assert stream_2_list == expected_test_stream_data["stream2"] + assert always_empty_stream_list == expected_test_stream_data["always-empty-stream"] @@ -380,11 +397,15 @@ def test_sync_with_merge_to_duckdb(expected_test_stream_data: dict[str, list[dic assert result.processed_records == 3 for stream_name, expected_data in expected_test_stream_data.items(): - pd.testing.assert_frame_equal( - result[stream_name].to_pandas(), - pd.DataFrame(expected_data), - check_dtype=False, - ) + if len(cache[stream_name]) > 0: + pd.testing.assert_frame_equal( + result[stream_name].to_pandas(), + pd.DataFrame(expected_data), + check_dtype=False, + ) + else: + # stream is empty + assert len(expected_test_stream_data[stream_name]) == 0 def test_cached_dataset( @@ -564,11 +585,15 @@ def test_sync_with_merge_to_postgres(new_pg_cache_config: PostgresCacheConfig, e assert result.processed_records == 3 for stream_name, expected_data in expected_test_stream_data.items(): - pd.testing.assert_frame_equal( - result[stream_name].to_pandas(), - pd.DataFrame(expected_data), - check_dtype=False, - ) + if len(cache[stream_name]) > 0: + pd.testing.assert_frame_equal( + result[stream_name].to_pandas(), + pd.DataFrame(expected_data), + check_dtype=False, + ) + else: + # stream is empty + assert len(expected_test_stream_data[stream_name]) == 0 def test_airbyte_lib_version() -> None: @@ -682,11 +707,15 @@ def test_sync_to_postgres(new_pg_cache_config: PostgresCacheConfig, expected_tes assert result.processed_records == 3 for stream_name, expected_data in expected_test_stream_data.items(): - pd.testing.assert_frame_equal( - result[stream_name].to_pandas(), - pd.DataFrame(expected_data), - check_dtype=False, - ) + if len(cache[stream_name]) > 0: + pd.testing.assert_frame_equal( + result[stream_name].to_pandas(), + pd.DataFrame(expected_data), + check_dtype=False, + ) + else: + # stream is empty + assert len(expected_test_stream_data[stream_name]) == 0 @pytest.mark.slow @pytest.mark.requires_creds @@ -700,11 +729,15 @@ def test_sync_to_snowflake(snowflake_config: SnowflakeCacheConfig, expected_test assert result.processed_records == 3 for stream_name, expected_data in expected_test_stream_data.items(): - pd.testing.assert_frame_equal( - result[stream_name].to_pandas(), - pd.DataFrame(expected_data), - check_dtype=False, - ) + if len(cache[stream_name]) > 0: + pd.testing.assert_frame_equal( + result[stream_name].to_pandas(), + pd.DataFrame(expected_data), + check_dtype=False, + ) + else: + # stream is empty + assert len(expected_test_stream_data[stream_name]) == 0 def test_sync_limited_streams(expected_test_stream_data):