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Only using uniquely mapped reads for BAFExtract #11

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arjun0502 opened this issue Feb 4, 2021 · 0 comments
Open

Only using uniquely mapped reads for BAFExtract #11

arjun0502 opened this issue Feb 4, 2021 · 0 comments

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@arjun0502
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I am planning to run BAFExtract on my STAR-aligned BAM file, but I am not sure what to specify as the minimum mapping quality threshold. Should I specify 255 so that it only uses uniquely mapped reads?
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@arjun0502