From 3c21d99bdb6fc64063a07a9db5e6e13ecf6a7445 Mon Sep 17 00:00:00 2001 From: alameldin Date: Wed, 25 Feb 2015 17:25:20 -0500 Subject: [PATCH] updating the README.rst and ChangeLog --- ChangeLog | 4 ---- sandbox/README.rst | 6 +++--- 2 files changed, 3 insertions(+), 7 deletions(-) diff --git a/ChangeLog b/ChangeLog index 020d09621e..89fc64a22f 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,13 +1,9 @@ 2015-02-25 Hussien Alameldin * sandbox/bloom_count.py: renamed to bloom-count.py - * sandbox/bloom_count.pyc: renamed to bloom-count.pyc * sandbox/bloom_count_intersection.py: renamed to bloom-count-intersection.py - * sandbox/bloom_count_intersection.pyc: renamed to - bloom-count-intersection.pyc * sandbox/read_aligner.py: renamed to read-aligner.py - * sandbox/read_aligner.pyc: renamed to read-aligner.pyc 2015-02-25 Tamer A. Mansour diff --git a/sandbox/README.rst b/sandbox/README.rst index aa393a6a31..1dfcc57d75 100644 --- a/sandbox/README.rst +++ b/sandbox/README.rst @@ -63,8 +63,8 @@ Good ideas to rewrite using newer tools/approaches: * assembly-diff.py - find sequences that differ between two assemblies * assembly-diff-2.py - find subsequences that differ between two assemblies -* bloom_count.py - count # of unique k-mers; should be reimplemented with HyperLogLog -* bloom_count_intersection.py - look at unique and disjoint #s of k-mers +* bloom-count.py - count # of unique k-mers; should be reimplemented with HyperLogLog, Renamed from bloom_count.py in commit 4788c31 +* bloom-count-intersection.py - look at unique and disjoint #s of k-mers, Renamed from bloom_count_intersection.py in commit 4788c31. * split-sequences-by-length.py - break up short reads by length To examine: @@ -76,7 +76,7 @@ To examine: * error-correct-pass2.py - new error correction foo * find-unpart.py - something to do with finding unpartitioned sequences * normalize-by-align.py - new error correction foo -* read_aligner.py - new error correction foo +* read-aligner.py - new error correction foo, Renamed from read_aligner.py in commit 4788c31. * uniqify-sequences.py - print out paths that are unique in the graph * write-interleave.py - is this used by any protocol etc?