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Welcome to the YAMP wiki.

Briefly, YAMP (Yet Another Metagenomic Pipeline) aims at automating the analysis of metagenomic data. It starts from the raw sequencing data and has a strong focus on quality control, allowing the data processing up to the functional annotation. More information can be found in the YAMP workflow page, or in the project GitHub README.

This wiki includes several tutorials, but it is recommended to start with How to run YAMP. This tutorial will explain how to set the parameters in the nextflow.config file, and describe the files that will be produced in output.

Tutorials on How to use Docker and How to run YAMP on HPC are also available!

Please, before running YAMP, check if you have all the dependencies installed, as explained in the Getting started section and in the project GitHub README.