diff --git a/datafusion/substrait/Cargo.toml b/datafusion/substrait/Cargo.toml
index 091b3a565b44..41c9e4d051d6 100644
--- a/datafusion/substrait/Cargo.toml
+++ b/datafusion/substrait/Cargo.toml
@@ -24,9 +24,9 @@ rust-version = "1.62"
 [dependencies]
 async-recursion = "1.0"
 datafusion = { version = "16.0.0", path = "../core" }
-prost = "0.9"
-prost-types = "0.9"
-substrait = "0.2"
+prost = "0.11"
+prost-types = "0.11"
+substrait = "0.3"
 tokio = "1.17"
 
 [build-dependencies]
diff --git a/datafusion/substrait/src/producer.rs b/datafusion/substrait/src/producer.rs
index ab32983b9b99..902c389d8ee6 100644
--- a/datafusion/substrait/src/producer.rs
+++ b/datafusion/substrait/src/producer.rs
@@ -74,6 +74,7 @@ pub fn to_substrait_plan(plan: &LogicalPlan) -> Result<Box<Plan>> {
 
     // Return parsed plan
     Ok(Box::new(Plan {
+        version: None, // TODO: https://github.com/apache/arrow-datafusion/issues/4949
         extension_uris: vec![],
         extensions: function_extensions,
         relations: plan_rels,
@@ -115,6 +116,7 @@ pub fn to_substrait_rel(
                             r#struct: None,
                         }),
                         filter: None,
+                        best_effort_filter: None,
                         projection: Some(MaskExpression {
                             select: Some(StructSelect { struct_items }),
                             maintain_singular_struct: false,
@@ -367,6 +369,7 @@ pub fn to_substrait_agg_measure(
                     },
                     phase: substrait::protobuf::AggregationPhase::Unspecified as i32,
                     args: vec![],
+                    options: vec![],
                 }),
                 filter: match filter {
                     Some(f) => Some(to_substrait_rex(f, schema, extension_info)?),
@@ -447,6 +450,7 @@ pub fn make_binary_op_scalar_func(
             ],
             output_type: None,
             args: vec![],
+            options: vec![],
         })),
     }
 }