From c7de45f69ad87976f211ff448a5f8689b46cbed1 Mon Sep 17 00:00:00 2001
From: tienday <>
Date: Tue, 5 Sep 2023 19:45:04 +0900
Subject: [PATCH] update docker settings.

---
 docker-compose.dev.yml              | 6 ++++++
 docker-compose.yml                  | 9 +++++++++
 studio/config/docker/Dockerfile     | 3 +++
 studio/config/docker/Dockerfile.dev | 3 +++
 4 files changed, 21 insertions(+)

diff --git a/docker-compose.dev.yml b/docker-compose.dev.yml
index 45b9afed9..987575f1c 100644
--- a/docker-compose.dev.yml
+++ b/docker-compose.dev.yml
@@ -9,6 +9,8 @@ services:
       - studio/config/.env
     volumes:
       - db_data:/var/lib/mysql
+    environment:
+      TZ: Asia/Tokyo
 
   phpmyadmin:
     image: phpmyadmin
@@ -18,6 +20,8 @@ services:
       - studio/config/.env
     ports:
       - 20080:80
+    environment:
+      TZ: Asia/Tokyo
 
   studio-dev-be:
     build:
@@ -43,6 +47,8 @@ services:
     ports:
       - "3000:3000"
     command: ash -c 'yarn install && yarn start'
+    environment:
+      TZ: Asia/Tokyo
 
 volumes:
   db_data:
diff --git a/docker-compose.yml b/docker-compose.yml
index c49854798..2caf1c951 100644
--- a/docker-compose.yml
+++ b/docker-compose.yml
@@ -9,20 +9,29 @@ services:
       - studio/config/.env
     volumes:
       - db_data:/var/lib/mysql
+    environment:
+      TZ: Asia/Tokyo
+    restart: always
 
   studio:
     build:
       context: .
       dockerfile: studio/config/docker/Dockerfile
     working_dir: /app
+    volumes:
+      - ../optinist-docker-volumes/.snakemake/:/app/.snakemake
+      - ../optinist-docker-volumes/logs/:/app/logs
+      - ../optinist-docker-volumes/studio_data/:/app/studio_data
     ports:
       - "8000:8000"
     command: bash -c "alembic upgrade head && python main.py --host 0.0.0.0 --port 8000"
     environment:
       PYTHONPATH: /app/
       TZ: Asia/Tokyo
+      OPTINIST_DIR: /app/studio_data
     depends_on:
       - db
+    restart: always
 
 volumes:
   db_data:
diff --git a/studio/config/docker/Dockerfile b/studio/config/docker/Dockerfile
index f34d472df..fbe17121d 100644
--- a/studio/config/docker/Dockerfile
+++ b/studio/config/docker/Dockerfile
@@ -2,9 +2,12 @@ FROM --platform=linux/amd64 python:3.8.16-slim
 
 WORKDIR /app
 
+RUN echo 'alias ll="ls -la"' >> ~/.bashrc
+
 RUN mkdir -p /root/miniconda3 && \
     apt-get --allow-releaseinfo-change update && \
     apt-get install --no-install-recommends -y gcc g++ libgl1 libgl1-mesa-dev && \
+    apt-get install --no-install-recommends -y procps iproute2 less vim && \
     apt-get install --no-install-recommends -y wget && \
     wget -q https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-Linux-x86_64.sh -O ~/miniconda3/miniconda.sh && \
     apt-get purge wget -y && apt-get autoremove -y && apt-get clean && \
diff --git a/studio/config/docker/Dockerfile.dev b/studio/config/docker/Dockerfile.dev
index 045851a48..c444aecbd 100644
--- a/studio/config/docker/Dockerfile.dev
+++ b/studio/config/docker/Dockerfile.dev
@@ -2,8 +2,11 @@ FROM --platform=linux/amd64 python:3.8.16-slim
 
 WORKDIR /app
 
+RUN echo 'alias ll="ls -la"' >> ~/.bashrc
+
 RUN mkdir -p /root/miniconda3 && \
     apt-get --allow-releaseinfo-change update && \
+    apt-get install --no-install-recommends -y procps iproute2 less vim && \
     apt-get install --no-install-recommends -y wget && \
     wget -q https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-Linux-x86_64.sh -O ~/miniconda3/miniconda.sh && \
     apt-get purge wget -y && apt-get autoremove -y && apt-get clean && \