diff --git a/pyproject.toml b/pyproject.toml index e27f822..2c204a8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -45,6 +45,16 @@ dependencies = [ "deeplake>=3.8.27" ] +[project.optional-dependencies] +dev = [ + "pytest", + "pytest-cov", + "mypy", + "ruff", + "sphinx", + "sphinx-rtd-theme" +] + [project.urls] Documentation = "https://github.com/arjbingly/Capstone_5#readme" Issues = "https://github.com/arjbingly/Capstone_5/issues" diff --git a/src/docs/Makefile b/src/docs/Makefile new file mode 100644 index 0000000..d4bb2cb --- /dev/null +++ b/src/docs/Makefile @@ -0,0 +1,20 @@ +# Minimal makefile for Sphinx documentation +# + +# You can set these variables from the command line, and also +# from the environment for the first two. +SPHINXOPTS ?= +SPHINXBUILD ?= sphinx-build +SOURCEDIR = . +BUILDDIR = _build + +# Put it first so that "make" without argument is like "make help". +help: + @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + +.PHONY: help Makefile + +# Catch-all target: route all unknown targets to Sphinx using the new +# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). +%: Makefile + @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) diff --git a/src/docs/_build/doctrees/environment.pickle b/src/docs/_build/doctrees/environment.pickle new file mode 100644 index 0000000..c35a6da Binary files /dev/null and b/src/docs/_build/doctrees/environment.pickle differ diff --git a/src/docs/_build/doctrees/grag.components.doctree b/src/docs/_build/doctrees/grag.components.doctree new file mode 100644 index 0000000..7e4d043 Binary files /dev/null and b/src/docs/_build/doctrees/grag.components.doctree differ diff --git a/src/docs/_build/doctrees/grag.components.vectordb.doctree b/src/docs/_build/doctrees/grag.components.vectordb.doctree new file mode 100644 index 0000000..8972333 Binary files /dev/null and b/src/docs/_build/doctrees/grag.components.vectordb.doctree differ diff --git a/src/docs/_build/doctrees/grag.doctree b/src/docs/_build/doctrees/grag.doctree new file mode 100644 index 0000000..5cf3181 Binary files /dev/null and b/src/docs/_build/doctrees/grag.doctree differ diff --git a/src/docs/_build/doctrees/grag.prompts.doctree b/src/docs/_build/doctrees/grag.prompts.doctree new file mode 100644 index 0000000..41ec4bc Binary files /dev/null and b/src/docs/_build/doctrees/grag.prompts.doctree differ diff --git a/src/docs/_build/doctrees/grag.quantize.doctree b/src/docs/_build/doctrees/grag.quantize.doctree new file mode 100644 index 0000000..21f0060 Binary files /dev/null and b/src/docs/_build/doctrees/grag.quantize.doctree differ diff --git a/src/docs/_build/doctrees/grag.rag.doctree b/src/docs/_build/doctrees/grag.rag.doctree new file mode 100644 index 0000000..44f5c72 Binary files /dev/null and b/src/docs/_build/doctrees/grag.rag.doctree differ diff --git a/src/docs/_build/doctrees/index.doctree b/src/docs/_build/doctrees/index.doctree new file mode 100644 index 0000000..dfb3ff1 Binary files /dev/null and b/src/docs/_build/doctrees/index.doctree differ diff --git a/src/docs/_build/doctrees/modules.doctree b/src/docs/_build/doctrees/modules.doctree new file mode 100644 index 0000000..6579cdf Binary files /dev/null and b/src/docs/_build/doctrees/modules.doctree differ diff --git a/src/docs/_build/html/.buildinfo b/src/docs/_build/html/.buildinfo new file mode 100644 index 0000000..6e60b5e --- /dev/null +++ b/src/docs/_build/html/.buildinfo @@ -0,0 +1,4 @@ +# Sphinx build info version 1 +# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. +config: eef517887ca30e256065416dae71ba9d +tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/src/docs/_build/html/_modules/grag/components/embedding.html b/src/docs/_build/html/_modules/grag/components/embedding.html new file mode 100644 index 0000000..1fccb57 --- /dev/null +++ b/src/docs/_build/html/_modules/grag/components/embedding.html @@ -0,0 +1,148 @@ + + + + + + grag.components.embedding — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +

Source code for grag.components.embedding

+"""Class for embedding.
+
+This module provides:
+- Embedding
+"""
+
+from langchain_community.embeddings import HuggingFaceInstructEmbeddings
+from langchain_community.embeddings.sentence_transformer import (
+    SentenceTransformerEmbeddings,
+)
+
+
+
+[docs] +class Embedding: + """A class for vector embeddings. + + Supports: + huggingface sentence transformers -> model_type = 'sentence-transformers' + huggingface instructor embeddings -> model_type = 'instructor-embedding' + + Attributes: + embedding_type: embedding model type, refer above for supported types + embedding_model: huggingface model name + embedding_function: langchain embedding type + """ + + def __init__(self, embedding_type: str, embedding_model: str): + """Initialize the embedding with embedding_type and embedding_model.""" + self.embedding_type = embedding_type + self.embedding_model = embedding_model + match self.embedding_type: + case "sentence-transformers": + self.embedding_function = SentenceTransformerEmbeddings( + model_name=self.embedding_model + ) + case "instructor-embedding": + self.embedding_instruction = "Represent the document for retrival" + self.embedding_function = HuggingFaceInstructEmbeddings( + model_name=self.embedding_model + ) + self.embedding_function.embed_instruction = self.embedding_instruction + case _: + raise Exception("embedding_type is invalid")
+ +
+ +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/_modules/grag/components/llm.html b/src/docs/_build/html/_modules/grag/components/llm.html new file mode 100644 index 0000000..31b31b2 --- /dev/null +++ b/src/docs/_build/html/_modules/grag/components/llm.html @@ -0,0 +1,304 @@ + + + + + + grag.components.llm — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +

Source code for grag.components.llm

+"""Class for LLM."""
+
+import os
+from pathlib import Path
+
+import torch
+from dotenv import load_dotenv
+from langchain.callbacks.manager import CallbackManager
+from langchain.callbacks.streaming_stdout import StreamingStdOutCallbackHandler
+from langchain_community.llms import LlamaCpp
+from langchain_community.llms.huggingface_pipeline import HuggingFacePipeline
+from transformers import (
+    AutoModelForCausalLM,
+    AutoTokenizer,
+    BitsAndBytesConfig,
+    pipeline,
+)
+
+from .utils import get_config
+
+llm_conf = get_config()["llm"]
+
+print("CUDA: ", torch.cuda.is_available())
+
+
+
+[docs] +class LLM: + """A class for managing and utilizing large language models (LLMs). + + Attributes: + model_name (str): Name of the model to be loaded. + device_map (dict): Device mapping for model execution. + task (str): The task for which the model is being used. + max_new_tokens (int): Maximum new tokens to be generated. + temperature (float): Sampling temperature for generation. + n_batch (int): Number of batches for GPU CPP. + n_ctx (int): Context size for CPP. + n_gpu_layers (int): Number of GPU layers for CPP. + """ + + def __init__( + self, + model_name=llm_conf["model_name"], + device_map=llm_conf["device_map"], + task=llm_conf["task"], + max_new_tokens=llm_conf["max_new_tokens"], + temperature=llm_conf["temperature"], + n_batch=llm_conf["n_batch_gpu_cpp"], + n_ctx=llm_conf["n_ctx_cpp"], + n_gpu_layers=llm_conf["n_gpu_layers_cpp"], + std_out=llm_conf["std_out"], + base_dir=llm_conf["base_dir"], + quantization=llm_conf["quantization"], + pipeline=llm_conf["pipeline"], + ): + """Initialize the LLM class using the given parameters.""" + self.base_dir = Path(base_dir) + self._model_name = model_name + self.quantization = quantization + self.pipeline = pipeline + self.device_map = device_map + self.task = task + self.max_new_tokens = int(max_new_tokens) + self.temperature = temperature + self.n_batch = n_batch + self.n_ctx = n_ctx + self.n_gpu_layers = n_gpu_layers + if std_out: + self.callback_manager = CallbackManager([StreamingStdOutCallbackHandler()]) + else: + self.callback_manager = None + + @property + def model_name(self): + """Returns the name of the model.""" + return self._model_name + + @property + def model_path(self): + """Sets the model name.""" + return str( + self.base_dir / self.model_name / f"ggml-model-{self.quantization}.gguf" + ) + + @model_name.setter + def model_name(self, value): + """Returns the path to the model.""" + self._model_name = value + +
+[docs] + def hf_pipeline(self, is_local=False): + """Loads the model using Hugging Face transformers. + + Args: + is_local (bool): Whether to load the model from a local path. + """ + if is_local: + hf_model = Path(self.model_path).parent + else: + hf_model = self.model_name + match self.quantization: + case "Q8": + quantization_config = BitsAndBytesConfig(load_in_8bit=True) + case "Q4": + quantization_config = BitsAndBytesConfig(load_in_4bit=True) + case _: + raise ValueError( + f"{self.quantization} is not a valid quantization. Non-local hf_pipeline takes only Q4 and Q8." + ) + + try: + # Try to load the model without passing the token + tokenizer = AutoTokenizer.from_pretrained(hf_model) + model = AutoModelForCausalLM.from_pretrained( + hf_model, + quantization_config=quantization_config, + device_map=self.device_map, + torch_dtype=torch.float16, + ) + except OSError: # LocalTokenNotFoundError: + # If loading fails due to an auth token error, then load the token and retry + load_dotenv() + auth_token = os.getenv("AUTH_TOKEN") + if not auth_token: + raise ValueError("Authentication token not provided.") + tokenizer = AutoTokenizer.from_pretrained(hf_model, token=True) + model = AutoModelForCausalLM.from_pretrained( + hf_model, + quantization_config=quantization_config, + device_map=self.device_map, + torch_dtype=torch.float16, + token=True, + ) + + pipe = pipeline( + self.task, + model=model, + tokenizer=tokenizer, + torch_dtype=torch.bfloat16, + device_map=self.device_map, + max_new_tokens=self.max_new_tokens, + do_sample=True, + top_k=10, + num_return_sequences=1, + eos_token_id=tokenizer.eos_token_id, + ) + llm = HuggingFacePipeline( + pipeline=pipe, model_kwargs={"temperature": self.temperature} + ) + return llm
+ + +
+[docs] + def llama_cpp(self): + """Loads the model using a custom CPP pipeline.""" + # https://stackoverflow.com/a/77734908/13808323 + llm = LlamaCpp( + model_path=self.model_path, + max_tokens=self.max_new_tokens, + temperature=self.temperature, + n_gpu_layers=self.n_gpu_layers, + n_batch=self.n_batch, + n_ctx=self.n_ctx, + callbacks=self.callback_manager, + verbose=True, # Verbose is required to pass to the callback manager + ) + return llm
+ + +
+[docs] + def load_model( + self, model_name=None, pipeline=None, quantization=None, is_local=None + ): + """Loads the model based on the specified pipeline and model name. + + Args: + quantization (str): Quantization of the LLM model like Q5_K_M, f16, etc. Optional. + model_name (str): The name of the model to load. Optional. + pipeline (str): The pipeline to use for loading the model. Defaults to 'llama_cpp'. + is_local (bool): Whether the model is loaded from a local directory. Defaults to True. + """ + if model_name is not None: + self.model_name = model_name + if pipeline is not None: + self.pipeline = pipeline + if quantization is not None: + self.quantization = quantization + if is_local is None: + is_local = False + + match self.pipeline: + case "llama_cpp": + return self.llama_cpp() + case "hf": + return self.hf_pipeline(is_local=is_local)
+
+ +
+ +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/_modules/grag/components/multivec_retriever.html b/src/docs/_build/html/_modules/grag/components/multivec_retriever.html new file mode 100644 index 0000000..96f7772 --- /dev/null +++ b/src/docs/_build/html/_modules/grag/components/multivec_retriever.html @@ -0,0 +1,462 @@ + + + + + + grag.components.multivec_retriever — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+
    +
  • + + +
  • +
  • +
+
+
+
+
+ +

Source code for grag.components.multivec_retriever

+"""Class for retriever.
+
+This module provides:
+- Retriever
+"""
+
+import asyncio
+import uuid
+from pathlib import Path
+from typing import Any, Dict, List, Optional, Union
+
+from grag.components.parse_pdf import ParsePDF
+from grag.components.text_splitter import TextSplitter
+from grag.components.utils import get_config
+from grag.components.vectordb.base import VectorDB
+from grag.components.vectordb.deeplake_client import DeepLakeClient
+from langchain.retrievers.multi_vector import MultiVectorRetriever
+from langchain.storage import LocalFileStore
+from langchain_core.documents import Document
+from tqdm import tqdm
+from tqdm.asyncio import tqdm as atqdm
+
+multivec_retriever_conf = get_config()["multivec_retriever"]
+
+
+
+[docs] +class Retriever: + """A class for multi vector retriever. + + It connects to a vector database and a local file store. + It is used to return most similar chunks from a vector store but has the additional functionality to return a + linked document, chunk, etc. + + Attributes: + store_path: Path to the local file store + id_key: A key prefix for identifying documents + vectordb: ChromaClient class instance from components.client + store: langchain.storage.LocalFileStore object, stores the key value pairs of document id and parent file + retriever: langchain.retrievers.multi_vector.MultiVectorRetriever class instance, + langchain's multi-vector retriever + splitter: TextSplitter class instance from components.text_splitter + namespace: Namespace for producing unique id + top_k: Number of top chunks to return from similarity search. + + """ + + def __init__( + self, + vectordb: Optional[VectorDB] = None, + store_path: str = multivec_retriever_conf["store_path"], + id_key: str = multivec_retriever_conf["id_key"], + namespace: str = multivec_retriever_conf["namespace"], + top_k=int(multivec_retriever_conf["top_k"]), + client_kwargs: Optional[Dict[str, Any]] = None, + ): + """Initialize the Retriever. + + Args: + vectordb: Vector DB client instance + store_path: Path to the local file store, defaults to argument from config file + id_key: A key prefix for identifying documents, defaults to argument from config file + namespace: A namespace for producing unique id, defaults to argument from congig file + top_k: Number of top chunks to return from similarity search, defaults to 1 + client_kwargs: kwargs to pass to the vectordb client + """ + self.store_path = store_path + self.id_key = id_key + self.namespace = uuid.UUID(namespace) + if vectordb is None: + if client_kwargs is not None: + self.vectordb = DeepLakeClient(**client_kwargs) + else: + self.vectordb = DeepLakeClient() + else: + self.vectordb = vectordb + self.store = LocalFileStore(self.store_path) + self.retriever = MultiVectorRetriever( + vectorstore=self.vectordb.langchain_client, + byte_store=self.store, + id_key=self.id_key, + ) + self.splitter = TextSplitter() + self.top_k: int = top_k + self.retriever.search_kwargs = {"k": self.top_k} + +
+[docs] + def id_gen(self, doc: Document) -> str: + """Takes a document and returns a unique id (uuid5) using the namespace and document source. + + This ensures that a single document always gets the same unique id. + + Args: + doc: langchain_core.documents.Document + + Returns: + string of hexadecimal uuid + """ + return uuid.uuid5(self.namespace, doc.metadata["source"]).hex
+ + +
+[docs] + def gen_doc_ids(self, docs: List[Document]) -> List[str]: + """Takes a list of documents and produces a list of unique id, refer id_gen method for more details. + + Args: + docs: List of langchain_core.documents.Document + + Returns: + List of hexadecimal uuid + + """ + return [self.id_gen(doc) for doc in docs]
+ + +
+[docs] + def split_docs(self, docs: List[Document]) -> List[Document]: + """Takes a list of documents and splits them into smaller chunks. + + Using TextSplitter from components.text_splitter + Also adds the unique parent document id into metadata + + Args: + docs: List of langchain_core.documents.Document + + Returns: + list of chunks after splitting + + """ + chunks = [] + for doc in docs: + _id = self.id_gen(doc) + _sub_docs = self.splitter.text_splitter.split_documents([doc]) + for _sub_doc in _sub_docs: + _sub_doc.metadata[self.id_key] = _id + chunks.extend(_sub_docs) + return chunks
+ + +
+[docs] + def add_docs(self, docs: List[Document]): + """Adds given documents into the vector database also adds the parent document into the file store. + + Args: + docs: List of langchain_core.documents.Document + + Returns: + None + + """ + chunks = self.split_docs(docs) + doc_ids = self.gen_doc_ids(docs) + self.vectordb.add_docs(chunks) + self.retriever.docstore.mset(list(zip(doc_ids, docs)))
+ + +
+[docs] + async def aadd_docs(self, docs: List[Document]): + """Adds given documents into the vector database also adds the parent document into the file store. + + Args: + docs: List of langchain_core.documents.Document + + Returns: + None + + """ + chunks = self.split_docs(docs) + doc_ids = self.gen_doc_ids(docs) + await asyncio.run(self.vectordb.aadd_docs(chunks)) + self.retriever.docstore.mset(list(zip(doc_ids)))
+ + +
+[docs] + def get_chunk(self, query: str, with_score=False, top_k=None): + """Returns the most similar chunks from the vector database. + + Args: + query: A query string + with_score: Outputs scores of returned chunks + top_k: Number of top similar chunks to return, if None defaults to self.top_k + + Returns: + list of Documents + + """ + _top_k = top_k if top_k else self.retriever.search_kwargs["k"] + return self.vectordb.get_chunk(query=query, top_k=_top_k, with_score=with_score)
+ + +
+[docs] + async def aget_chunk(self, query: str, with_score=False, top_k=None): + """Returns the most (cosine) similar chunks from the vector database, asynchronously. + + Args: + query: A query string + with_score: Outputs scores of returned chunks + top_k: Number of top similar chunks to return, if None defaults to self.top_k + + Returns: + list of Documents + + """ + _top_k = top_k if top_k else self.retriever.search_kwargs["k"] + return await self.vectordb.aget_chunk( + query=query, top_k=_top_k, with_score=with_score + )
+ + +
+[docs] + def get_doc(self, query: str): + """Returns the parent document of the most (cosine) similar chunk from the vector database. + + Args: + query: A query string + Returns: + Documents + + """ + return self.retriever.get_relevant_documents(query=query)
+ + +
+[docs] + async def aget_doc(self, query: str): + """Returns the parent documents of the most (cosine) similar chunks from the vector database. + + Args: + query: A query string + Returns: + Documents + + """ + return await self.retriever.aget_relevant_documents(query=query)
+ + +
+[docs] + def get_docs_from_chunks(self, chunks: List[Document], one_to_one=False): + """Returns the parent documents of chunks. + + Args: + chunks: chunks from vector store + one_to_one: if True, returns parent doc for each chunk + Returns: + parent documents + """ + ids = [] + for d in chunks: + if one_to_one: + if self.id_key in d.metadata: + ids.append(d.metadata[self.id_key]) + docs = self.retriever.docstore.mget(ids) + return docs + else: + if self.id_key in d.metadata and d.metadata[self.id_key] not in ids: + ids.append(d.metadata[self.id_key]) + docs = self.retriever.docstore.mget(ids) + return [d for d in docs if d is not None]
+ + +
+[docs] + def ingest( + self, + dir_path: Union[str, Path], + glob_pattern: str = "**/*.pdf", + dry_run: bool = False, + verbose: bool = True, + parser_kwargs: dict = None, + ): + """Ingests the files in directory. + + Args: + dir_path: path to the directory + glob_pattern: glob pattern to identify files + dry_run: if True, does not ingest any files + verbose: if True, shows progress + parser_kwargs: arguments to pass to the parser + + """ + _formats_to_add = ["Text", "Tables"] + filepath_gen = Path(dir_path).glob(glob_pattern) + if parser_kwargs: + parser = ParsePDF(parser_kwargs) + else: + parser = ParsePDF() + if verbose: + num_files = len(list(Path(dir_path).glob(glob_pattern))) + pbar = tqdm(filepath_gen, total=num_files, desc="Ingesting Files") + for filepath in pbar: + if not dry_run: + pbar.set_postfix_str( + f"Parsing file - {filepath.relative_to(dir_path)}" + ) + docs = parser.load_file(filepath) + pbar.set_postfix_str( + f"Adding file - {filepath.relative_to(dir_path)}" + ) + for format_key in _formats_to_add: + self.add_docs(docs[format_key]) + print(f"Completed adding - {filepath.relative_to(dir_path)}") + else: + print(f"DRY RUN: found - {filepath.relative_to(dir_path)}")
+ + +
+[docs] + async def aingest( + self, + dir_path: Union[str, Path], + glob_pattern: str = "**/*.pdf", + dry_run: bool = False, + verbose: bool = True, + parser_kwargs: dict = None, + ): + """Asynchronously ingests the files in directory. + + Args: + dir_path: path to the directory + glob_pattern: glob pattern to identify files + dry_run: if True, does not ingest any files + verbose: if True, shows progress + parser_kwargs: arguments to pass to the parser + + """ + _formats_to_add = ["Text", "Tables"] + filepath_gen = Path(dir_path).glob(glob_pattern) + if parser_kwargs: + parser = ParsePDF(parser_kwargs) + else: + parser = ParsePDF() + if verbose: + num_files = len(list(Path(dir_path).glob(glob_pattern))) + pbar = atqdm(filepath_gen, total=num_files, desc="Ingesting Files") + for filepath in pbar: + if not dry_run: + pbar.set_postfix_str( + f"Parsing file - {filepath.relative_to(dir_path)}" + ) + docs = parser.load_file(filepath) + pbar.set_postfix_str( + f"Adding file - {filepath.relative_to(dir_path)}" + ) + for format_key in _formats_to_add: + await self.aadd_docs(docs[format_key]) + print(f"Completed adding - {filepath.relative_to(dir_path)}") + else: + print(f"DRY RUN: found - {filepath.relative_to(dir_path)}")
+
+ +
+ +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/_modules/grag/components/parse_pdf.html b/src/docs/_build/html/_modules/grag/components/parse_pdf.html new file mode 100644 index 0000000..507a042 --- /dev/null +++ b/src/docs/_build/html/_modules/grag/components/parse_pdf.html @@ -0,0 +1,371 @@ + + + + + + grag.components.parse_pdf — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +

Source code for grag.components.parse_pdf

+"""Classes for parsing files.
+
+This module provides:
+- ParsePDF
+"""
+
+from langchain_core.documents import Document
+from unstructured.partition.pdf import partition_pdf
+
+from .utils import get_config
+
+parser_conf = get_config()["parser"]
+
+
+
+[docs] +class ParsePDF: + """Parsing and partitioning PDF documents into Text, Table or Image elements. + + Attributes: + single_text_out (bool): Whether to combine all text elements into a single output document. + strategy (str): The strategy for PDF partitioning; default is "hi_res" for better accuracy. + extract_image_block_types (list): Elements to be extracted as image blocks. + infer_table_structure (bool): Whether to extract tables during partitioning. + extract_images (bool): Whether to extract images. + image_output_dir (str): Directory to save extracted images, if any. + add_captions_to_text (bool): Whether to include figure captions in text output. Default is True. + add_captions_to_blocks (bool): Whether to add captions to table and image blocks. Default is True. + add_caption_first (bool): Whether to place captions before their corresponding image or table in the output. Default is True. + """ + + def __init__( + self, + single_text_out=parser_conf["single_text_out"], + strategy=parser_conf["strategy"], + infer_table_structure=parser_conf["infer_table_structure"], + extract_images=parser_conf["extract_images"], + image_output_dir=parser_conf["image_output_dir"], + add_captions_to_text=parser_conf["add_captions_to_text"], + add_captions_to_blocks=parser_conf["add_captions_to_blocks"], + table_as_html=parser_conf["table_as_html"], + ): + """Initialize instance variables with parameters.""" + self.strategy = strategy + if extract_images: # by default always extract Table + self.extract_image_block_types = [ + "Image", + "Table", + ] # extracting Image and Table as image blocks + else: + self.extract_image_block_types = ["Table"] + self.infer_table_structure = infer_table_structure + self.add_captions_to_text = add_captions_to_text + self.add_captions_to_blocks = add_captions_to_blocks + self.image_output_dir = image_output_dir + self.single_text_out = single_text_out + self.add_caption_first = True + self.table_as_html = table_as_html + +
+[docs] + def partition(self, path: str): + """Partitions a PDF document into elements based on the instance's configuration. + + Parameters: + path (str): The file path of the PDF document to be parsed and partitioned. + + Returns: + list: A list of partitioned elements from the PDF document. + """ + self.file_path = path + partitions = partition_pdf( + filename=self.file_path, + strategy=self.strategy, + # extract_images_in_pdf=True, # Not required if specifies extract_image_block_type + extract_image_block_types=self.extract_image_block_types, + infer_table_structure=self.infer_table_structure, + extract_image_block_to_payload=False, + extract_image_block_output_dir=self.image_output_dir, + ) + return partitions
+ + +
+[docs] + def classify(self, partitions): + """Classifies the partitioned elements into Text, Tables, and Images list in a dictionary. + + Also adds captions for each element (if available). + + Parameters: + partitions (list): The list of partitioned elements from the PDF document. + + Returns: + dict: A dictionary with keys 'Text', 'Tables', and 'Images', each containing a list of corresponding elements. + """ + # Initialize lists for each type of element + classified_elements = {"Text": [], "Tables": [], "Images": []} + + for i, element in enumerate(partitions): + # enumerate, classify and add element + caption (when available) to respective list + if element.category == "Table": + if self.add_captions_to_blocks and i + 1 < len(partitions): + if ( + partitions[i + 1].category == "FigureCaption" + ): # check for caption + caption_element = partitions[i + 1] + else: + caption_element = None + classified_elements["Tables"].append((element, caption_element)) + else: + classified_elements["Tables"].append((element, None)) + elif element.category == "Image": + if self.add_captions_to_blocks and i + 1 < len(partitions): + if ( + partitions[i + 1].category == "FigureCaption" + ): # check for caption + caption_element = partitions[i + 1] + else: + caption_element = None + classified_elements["Images"].append((element, caption_element)) + else: + classified_elements["Images"].append((element, None)) + else: + if not self.add_captions_to_text: + if element.category != "FigureCaption": + classified_elements["Text"].append(element) + else: + classified_elements["Text"].append(element) + + return classified_elements
+ + +
+[docs] + def text_concat(self, elements) -> str: + """Context aware concatenates all elements into a single string.""" + full_text = "" + for current_element, next_element in zip(elements, elements[1:]): + curr_type = current_element.category + next_type = next_element.category + + # if curr_type in ["FigureCaption", "NarrativeText", "Title", "Address", 'Table', "UncategorizedText", "Formula"]: + # full_text += str(current_element) + "\n\n" + + if curr_type == "Title" and next_type == "NarrativeText": + full_text += str(current_element) + "\n" + elif curr_type == "NarrativeText" and next_type == "NarrativeText": + full_text += str(current_element) + "\n" + elif curr_type == "ListItem": + full_text += "- " + str(current_element) + "\n" + if next_element == "Title": + full_text += "\n" + elif next_element == "Title": + full_text = str(current_element) + "\n\n" + + elif curr_type in ["Header", "Footer", "PageBreak"]: + full_text += str(current_element) + "\n\n\n" + + else: + full_text += "\n" + + return full_text
+ + +
+[docs] + def process_text(self, elements): + """Processes text elements into langchain Documents. + + Parameters: + elements (list): The list of text elements to be processed. + + Returns: + docs (list): A list of Document instances containing the extracted Text content and their metadata. + """ + if self.single_text_out: + metadata = {"source": self.file_path} # Check for more metadata + text = "\n\n".join([str(el) for el in elements]) + docs = [Document(page_content=text, metadata=metadata)] + else: + docs = [] + for element in elements: + metadata = {"source": self.file_path, "category": element.category} + metadata.update(element.metadata.to_dict()) + docs.append(Document(page_content=str(element), metadata=metadata)) + return docs
+ + +
+[docs] + def process_tables(self, elements): + """Processes table elements into Documents, including handling of captions if specified. + + Parameters: + elements (list): The list of table elements (and optional captions) to be processed. + + Returns: + docs (list): A list of Document instances containing Tables, their captions and metadata. + """ + docs = [] + + for block_element, caption_element in elements: + metadata = {"source": self.file_path, "category": block_element.category} + metadata.update(block_element.metadata.to_dict()) + if self.table_as_html: + table_data = block_element.metadata.text_as_html + else: + table_data = str(block_element) + + if caption_element: + if ( + self.add_caption_first + ): # if there is a caption, add that before the element + content = "\n\n".join([str(caption_element), table_data]) + else: + content = "\n\n".join([table_data, str(caption_element)]) + else: + content = table_data + docs.append(Document(page_content=content, metadata=metadata)) + return docs
+ + +
+[docs] + def process_images(self, elements): + """Processes image elements into Documents, including handling of captions if specified. + + Parameters: + elements (list): The list of image elements (and optional captions) to be processed. + + Returns: + docs (list): A list of Document instances containing the Images, their caption and metadata. + """ + docs = [] + for block_element, caption_element in elements: + metadata = {"source": self.file_path, "category": block_element.category} + metadata.update(block_element.metadata.to_dict()) + if caption_element: # if there is a caption, add that before the element + if self.add_caption_first: + content = "\n\n".join([str(caption_element), str(block_element)]) + else: + content = "\n\n".join([str(block_element), str(caption_element)]) + else: + content = str(block_element) + docs.append(Document(page_content=content, metadata=metadata)) + return docs
+ + +
+[docs] + def load_file(self, path): + """Loads a PDF file, partitions and classifies its elements, and processes these elements into Documents. + + Parameters: + path (str): The file path of the PDF document to be loaded and processed. + + Returns: + dict: A dictionary with keys 'Text', 'Tables', and 'Images', each containing a list of processed Document instances. + """ + partitions = self.partition(str(path)) + classified_elements = self.classify(partitions) + text_docs = self.process_text(classified_elements["Text"]) + table_docs = self.process_tables(classified_elements["Tables"]) + image_docs = self.process_images(classified_elements["Images"]) + return {"Text": text_docs, "Tables": table_docs, "Images": image_docs}
+
+ +
+ +
+
+ +
+
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+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/_modules/grag/components/prompt.html b/src/docs/_build/html/_modules/grag/components/prompt.html new file mode 100644 index 0000000..1587420 --- /dev/null +++ b/src/docs/_build/html/_modules/grag/components/prompt.html @@ -0,0 +1,314 @@ + + + + + + grag.components.prompt — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +

Source code for grag.components.prompt

+"""Classes for prompts.
+
+This module provides:
+- Prompt - for generic prompts
+- FewShotPrompt - for few-shot prompts
+"""
+
+import json
+from pathlib import Path
+from typing import Any, Dict, List, Optional, Union
+
+from langchain.prompts.few_shot import FewShotPromptTemplate
+from langchain_core.prompts import PromptTemplate
+from pydantic import BaseModel, Field, field_validator
+
+Example = Dict[str, Any]
+
+SUPPORTED_TASKS = ["QA"]
+SUPPORTED_DOC_CHAINS = ["stuff", "refine"]
+
+
+
+[docs] +class Prompt(BaseModel): + """A class for generic prompts. + + Attributes: + name (str): The prompt name (Optional, defaults to "custom_prompt") + llm_type (str): The type of llm, llama2, etc (Optional, defaults to "None") + task (str): The task (Optional, defaults to QA) + source (str): The source of the prompt (Optional, defaults to "NoSource") + doc_chain (str): The doc chain for the prompt ("stuff", "refine") (Optional, defaults to "stuff") + language (str): The language of the prompt (Optional, defaults to "en") + filepath (str): The filepath of the prompt (Optional) + input_keys (List[str]): The input keys for the prompt + template (str): The template for the prompt + """ + + name: str = Field(default="custom_prompt") + llm_type: str = Field(default="None") + task: str = Field(default="QA") + source: str = Field(default="NoSource") + doc_chain: str = Field(default="stuff") + language: str = "en" + filepath: Optional[str] = Field(default=None, exclude=True) + input_keys: List[str] + template: str + prompt: Optional[PromptTemplate] = Field(exclude=True, repr=False, default=None) + +
+[docs] + @field_validator("input_keys") + @classmethod + def validate_input_keys(cls, v) -> List[str]: + """Validate the input_keys field.""" + if v is None or v == []: + raise ValueError("input_keys cannot be empty") + return v
+ + +
+[docs] + @field_validator("doc_chain") + @classmethod + def validate_doc_chain(cls, v: str) -> str: + """Validate the doc_chain field.""" + if v not in SUPPORTED_DOC_CHAINS: + raise ValueError( + f"The provided doc_chain, {v} is not supported, supported doc_chains are {SUPPORTED_DOC_CHAINS}" + ) + return v
+ + +
+[docs] + @field_validator("task") + @classmethod + def validate_task(cls, v: str) -> str: + """Validate the task field.""" + if v not in SUPPORTED_TASKS: + raise ValueError( + f"The provided task, {v} is not supported, supported tasks are {SUPPORTED_TASKS}" + ) + return v
+ + + # @model_validator(mode='after') + # def load_template(self): + # self.prompt = ChatPromptTemplate.from_template(self.template) + def __init__(self, **kwargs): + """Initialize the prompt.""" + super().__init__(**kwargs) + self.prompt = PromptTemplate( + input_variables=self.input_keys, template=self.template + ) + +
+[docs] + def save( + self, filepath: Union[Path, str, None], overwrite=False + ) -> Union[None, ValueError]: + """Saves the prompt class into a json file.""" + dump = self.model_dump_json(indent=2, exclude_defaults=True, exclude_none=True) + if filepath is None: + filepath = f"{self.name}.json" + if overwrite: + if self.filepath is None: + return ValueError("filepath does not exist in instance") + filepath = self.filepath + with open(filepath, "w") as f: + f.write(dump) + return None
+ + +
+[docs] + @classmethod + def load(cls, filepath: Union[Path, str]): + """Loads a json file and returns a Prompt class.""" + with open(f"{filepath}", "r") as f: + prompt_json = json.load(f) + _prompt = cls(**prompt_json) + _prompt.filepath = str(filepath) + return _prompt
+ + +
+[docs] + def format(self, **kwargs) -> str: + """Formats the prompt with provided keys and returns a string.""" + return self.prompt.format(**kwargs)
+
+ + + +
+[docs] +class FewShotPrompt(Prompt): + """A class for generic prompts. + + Attributes: + name (str): The prompt name (Optional, defaults to "custom_prompt") (Parent Class) + llm_type (str): The type of llm, llama2, etc (Optional, defaults to "None") (Parent Class) + task (str): The task (Optional, defaults to QA) (Parent Class) + source (str): The source of the prompt (Optional, defaults to "NoSource") (Parent Class) + doc_chain (str): The doc chain for the prompt ("stuff", "refine") (Optional, defaults to "stuff") (Parent Class) + language (str): The language of the prompt (Optional, defaults to "en") (Parent Class) + filepath (str): The filepath of the prompt (Optional) (Parent Class) + input_keys (List[str]): The input keys for the prompt (Parent Class) + input_keys (List[str]): The output keys for the prompt + prefix (str): The template prefix for the prompt + suffix (str): The template suffix for the prompt + example_template (str): The template for formatting the examples + examples (List[Dict[str, Any]]): The list of examples, each example is a dictionary with respective keys + """ + + output_keys: List[str] + examples: List[Dict[str, Any]] + prefix: str + suffix: str + example_template: str + prompt: Optional[FewShotPromptTemplate] = Field( + exclude=True, repr=False, default=None + ) + + def __init__(self, **kwargs): + """Initialize the prompt.""" + super().__init__(**kwargs) + eg_formatter = PromptTemplate( + input_vars=self.input_keys + self.output_keys, + template=self.example_template, + ) + self.prompt = FewShotPromptTemplate( + examples=self.examples, + example_prompt=eg_formatter, + prefix=self.prefix, + suffix=self.suffix, + input_variables=self.input_keys, + ) + +
+[docs] + @field_validator("output_keys") + @classmethod + def validate_output_keys(cls, v) -> List[str]: + """Validate the output_keys field.""" + if v is None or v == []: + raise ValueError("output_keys cannot be empty") + return v
+ + +
+[docs] + @field_validator("examples") + @classmethod + def validate_examples(cls, v) -> List[Dict[str, Any]]: + """Validate the examples field.""" + if v is None or v == []: + raise ValueError("examples cannot be empty") + for eg in v: + if not all(key in eg for key in cls.input_keys): + raise ValueError(f"input key(s) not in example {eg}") + if not all(key in eg for key in cls.output_keys): + raise ValueError(f"output key(s) not in example {eg}") + return v
+
+ + + +if __name__ == "__main__": + p = Prompt.load("../prompts/Llama-2_QA_1.json") +
+ +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/_modules/grag/components/text_splitter.html b/src/docs/_build/html/_modules/grag/components/text_splitter.html new file mode 100644 index 0000000..9317c72 --- /dev/null +++ b/src/docs/_build/html/_modules/grag/components/text_splitter.html @@ -0,0 +1,141 @@ + + + + + + grag.components.text_splitter — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
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+
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+ +

Source code for grag.components.text_splitter

+"""Class for splitting/chunking text.
+
+This module provides:
+- TextSplitter
+"""
+
+from langchain.text_splitter import RecursiveCharacterTextSplitter
+
+from .utils import get_config
+
+text_splitter_conf = get_config()["text_splitter"]
+
+
+# %%
+
+[docs] +class TextSplitter: + """Class for recursively chunking text, it prioritizes '/n/n then '/n' and so on. + + Attributes: + chunk_size: maximum size of chunk + chunk_overlap: chunk overlap size + """ + + def __init__( + self, + chunk_size: int = text_splitter_conf["chunk_size"], + chunk_overlap: int = text_splitter_conf["chunk_overlap"], + ): + """Initialize TextSplitter.""" + self.text_splitter = RecursiveCharacterTextSplitter( + chunk_size=int(chunk_size), + chunk_overlap=int(chunk_overlap), + length_function=len, + is_separator_regex=False, + ) + """Initialize TextSplitter using chunk_size and chunk_overlap"""
+ +
+ +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/_modules/grag/components/utils.html b/src/docs/_build/html/_modules/grag/components/utils.html new file mode 100644 index 0000000..c80543c --- /dev/null +++ b/src/docs/_build/html/_modules/grag/components/utils.html @@ -0,0 +1,259 @@ + + + + + + grag.components.utils — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +

Source code for grag.components.utils

+"""Utils functions.
+
+This module provides:
+- stuff_docs: concats langchain documents into string
+- load_prompt: loads json prompt to langchain prompt
+- find_config_path: finds the path of the 'config.ini' file by traversing up the directory tree from the current path.
+- get_config: retrieves and parses the configuration settings from the 'config.ini' file.
+"""
+
+import json
+import os
+import textwrap
+from configparser import ConfigParser, ExtendedInterpolation
+from pathlib import Path
+from typing import List
+
+from langchain_core.documents import Document
+from langchain_core.prompts import ChatPromptTemplate
+
+
+
+[docs] +def stuff_docs(docs: List[Document]) -> str: + r"""Concatenates langchain documents into a string using '\n\n' seperator. + + Args: + docs: List of langchain_core.documents.Document + + Returns: + string of document page content joined by '\n\n' + """ + return "\n\n".join([doc.page_content for doc in docs])
+ + + +
+[docs] +def reformat_text_with_line_breaks(input_text, max_width=110): + """Reformat the given text to ensure each line does not exceed a specific width, preserving existing line breaks. + + Args: + input_text (str): The text to be reformatted. + max_width (int): The maximum width of each line. + + Returns: + str: The reformatted text with preserved line breaks and adjusted line width. + """ + # Divide the text into separate lines + original_lines = input_text.split("\n") + + # Apply wrapping to each individual line + reformatted_lines = [ + textwrap.fill(line, width=max_width) for line in original_lines + ] + + # Combine the lines back into a single text block + reformatted_text = "\n".join(reformatted_lines) + + return reformatted_text
+ + + +
+[docs] +def display_llm_output_and_sources(response_from_llm): + """Displays the result from an LLM response and lists the sources. + + Args: + response_from_llm (dict): The response object from an LLM which includes the result and source documents. + """ + # Display the main result from the LLM response + print(response_from_llm["result"]) + + # Separator for clarity + print("\nSources:") + + # Loop through each source document and print its source + for source in response_from_llm["source_documents"]: + print(source.metadata["source"])
+ + + +
+[docs] +def load_prompt(json_file: str | os.PathLike, return_input_vars=False): + """Loads a prompt template from json file and returns a langchain ChatPromptTemplate. + + Args: + json_file: path to the prompt template json file. + return_input_vars: if true returns a list of expected input variables for the prompt. + + Returns: + langchain_core.prompts.ChatPromptTemplate (and a list of input vars if return_input_vars is True) + + """ + with open(f"{json_file}", "r") as f: + prompt_json = json.load(f) + prompt_template = ChatPromptTemplate.from_template(prompt_json["template"]) + + input_vars = prompt_json["input_variables"] + + return (prompt_template, input_vars) if return_input_vars else prompt_template
+ + + +
+[docs] +def find_config_path(current_path: Path) -> Path: + """Finds the path of the 'config.ini' file by traversing up the directory tree from the current path. + + This function starts at the current path and moves up the directory tree until it finds a file named 'config.ini'. + If 'config.ini' is not found by the time the root of the directory tree is reached, a FileNotFoundError is raised. + + Args: + current_path (Path): The starting point for the search, typically the location of the script being executed. + + Returns: + Path: The path to the found 'config.ini' file. + + Raises: + FileNotFoundError: If 'config.ini' cannot be found in any of the parent directories. + """ + config_path = Path("src/config.ini") + while not (current_path / config_path).exists(): + current_path = current_path.parent + if current_path == current_path.parent: + raise FileNotFoundError(f"config.ini not found in {config_path}.") + return current_path / config_path
+ + + +
+[docs] +def get_config() -> ConfigParser: + """Retrieves and parses the configuration settings from the 'config.ini' file. + + This function locates the 'config.ini' file by calling `find_config_path` using the script's current location. + It initializes a `ConfigParser` object to read the configuration settings from the located 'config.ini' file. + + Returns: + ConfigParser: A parser object containing the configuration settings from 'config.ini'. + """ + # Assuming this script is somewhere inside your project directory + script_location = Path(__file__).resolve() + if os.environ.get("CONFIG_PATH"): + config_path = os.environ.get("CONFIG_PATH") + else: + config_path = find_config_path(script_location) + os.environ["CONFIG_PATH"] = str(config_path) + print(f"Loaded config from {config_path}.") + # Initialize parser and read config + config = ConfigParser(interpolation=ExtendedInterpolation()) + config.read(config_path) + + return config
+ +
+ +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/_modules/grag/components/vectordb/base.html b/src/docs/_build/html/_modules/grag/components/vectordb/base.html new file mode 100644 index 0000000..b860ba1 --- /dev/null +++ b/src/docs/_build/html/_modules/grag/components/vectordb/base.html @@ -0,0 +1,206 @@ + + + + + + grag.components.vectordb.base — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + +
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+ +

Source code for grag.components.vectordb.base

+"""Abstract base class for vector database clients.
+
+This module provides:
+- VectorDB
+"""
+
+from abc import ABC, abstractmethod
+from typing import List, Tuple, Union
+
+from langchain_community.vectorstores.utils import filter_complex_metadata
+from langchain_core.documents import Document
+
+
+
+[docs] +class VectorDB(ABC): + """Abstract base class for vector database clients.""" + + @abstractmethod + def __len__(self) -> int: + """Number of chunks in the vector database.""" + ... + +
+[docs] + @abstractmethod + def delete(self) -> None: + """Delete all chunks in the vector database."""
+ + +
+[docs] + @abstractmethod + def add_docs(self, docs: List[Document], verbose: bool = True) -> None: + """Adds documents to the vector database. + + Args: + docs: List of Documents + verbose: Show progress bar + + Returns: + None + """ + ...
+ + +
+[docs] + @abstractmethod + async def aadd_docs(self, docs: List[Document], verbose: bool = True) -> None: + """Adds documents to the vector database (asynchronous). + + Args: + docs: List of Documents + verbose: Show progress bar + + Returns: + None + """ + ...
+ + +
+[docs] + @abstractmethod + def get_chunk( + self, query: str, with_score: bool = False, top_k: int = None + ) -> Union[List[Document], List[Tuple[Document, float]]]: + """Returns the most similar chunks from the vector database. + + Args: + query: A query string + with_score: Outputs scores of returned chunks + top_k: Number of top similar chunks to return, if None defaults to self.top_k + + Returns: + list of Documents + """ + ...
+ + +
+[docs] + @abstractmethod + async def aget_chunk( + self, query: str, with_score: bool = False, top_k: int = None + ) -> Union[List[Document], List[Tuple[Document, float]]]: + """Returns the most similar chunks from the vector database (asynchronous). + + Args: + query: A query string + with_score: Outputs scores of returned chunks + top_k: Number of top similar chunks to return, if None defaults to self.top_k + + Returns: + list of Documents + """ + ...
+ + + def _filter_metadata(self, docs: List[Document]) -> List[Document]: + return filter_complex_metadata(docs, allowed_types=self.allowed_metadata_types)
+ +
+ +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/_modules/grag/components/vectordb/chroma_client.html b/src/docs/_build/html/_modules/grag/components/vectordb/chroma_client.html new file mode 100644 index 0000000..a0cfa17 --- /dev/null +++ b/src/docs/_build/html/_modules/grag/components/vectordb/chroma_client.html @@ -0,0 +1,322 @@ + + + + + + grag.components.vectordb.chroma_client — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + +
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+ +

Source code for grag.components.vectordb.chroma_client

+"""Class for Chroma vector database.
+
+This module provides:
+- ChromaClient
+"""
+
+from typing import List, Tuple, Union
+
+import chromadb
+from grag.components.embedding import Embedding
+from grag.components.utils import get_config
+from grag.components.vectordb.base import VectorDB
+from langchain_community.vectorstores import Chroma
+from langchain_core.documents import Document
+from tqdm import tqdm
+from tqdm.asyncio import tqdm as atqdm
+
+chroma_conf = get_config()["chroma"]
+
+
+
+[docs] +class ChromaClient(VectorDB): + """A class for connecting to a hosted Chroma Vectorstore collection. + + Attributes: + host : str + IP Address of hosted Chroma Vectorstore + port : str + port address of hosted Chroma Vectorstore + collection_name : str + name of the collection in the Chroma Vectorstore, each ChromaClient connects to a single collection + embedding_type : str + type of embedding used, supported 'sentence-transformers' and 'instructor-embedding' + embedding_model : str + model name of embedding used, should correspond to the embedding_type + embedding_function + a function of the embedding model, derived from the embedding_type and embedding_modelname + client: chromadb.HttpClient + Chroma API for client + collection + Chroma API for the collection + langchain_client: langchain_community.vectorstores.Chroma + LangChain wrapper for Chroma collection + """ + + def __init__( + self, + host=chroma_conf["host"], + port=chroma_conf["port"], + collection_name=chroma_conf["collection_name"], + embedding_type=chroma_conf["embedding_type"], + embedding_model=chroma_conf["embedding_model"], + ): + """Initialize a ChromaClient object. + + Args: + host: IP Address of hosted Chroma Vectorstore, defaults to argument from config file + port: port address of hosted Chroma Vectorstore, defaults to argument from config file + collection_name: name of the collection in the Chroma Vectorstore, defaults to argument from config file + embedding_type: type of embedding used, supported 'sentence-transformers' and 'instructor-embedding', defaults to argument from config file + embedding_model: model name of embedding used, should correspond to the embedding_type, defaults to argument from config file + """ + self.host: str = host + self.port: str = port + self.collection_name: str = collection_name + self.embedding_type: str = embedding_type + self.embedding_model: str = embedding_model + + self.embedding_function = Embedding( + embedding_model=self.embedding_model, embedding_type=self.embedding_type + ).embedding_function + + self.client = chromadb.HttpClient(host=self.host, port=self.port) + self.collection = self.client.get_or_create_collection( + name=self.collection_name + ) + self.langchain_client = Chroma( + client=self.client, + collection_name=self.collection_name, + embedding_function=self.embedding_function, + ) + self.allowed_metadata_types = (str, int, float, bool) + + def __len__(self) -> int: + """Count the number of chunks in the database.""" + return self.collection.count() + +
+[docs] + def delete(self) -> None: + """Delete all the chunks in the database collection.""" + self.client.delete_collection(self.collection_name) + self.collection = self.client.get_or_create_collection( + name=self.collection_name + ) + self.langchain_client = Chroma( + client=self.client, + collection_name=self.collection_name, + embedding_function=self.embedding_function, + )
+ + +
+[docs] + def test_connection(self, verbose=True) -> int: + """Tests connection with Chroma Vectorstore. + + Args: + verbose: if True, prints connection status + + Returns: + A random integer if connection is alive else None + """ + response = self.client.heartbeat() + if verbose: + if response: + print(f"Connection to {self.host}/{self.port} is alive..") + else: + print(f"Connection to {self.host}/{self.port} is not alive !!") + return response
+ + +
+[docs] + def add_docs(self, docs: List[Document], verbose=True) -> None: + """Adds documents to chroma vectorstore. + + Args: + docs: List of Documents + verbose: Show progress bar + + Returns: + None + """ + docs = self._filter_metadata(docs) + for doc in ( + tqdm(docs, desc=f"Adding to {self.collection_name}:") if verbose else docs + ): + _id = self.langchain_client.add_documents([doc])
+ + +
+[docs] + async def aadd_docs(self, docs: List[Document], verbose=True) -> None: + """Asynchronously adds documents to chroma vectorstore. + + Args: + docs: List of Documents + verbose: Show progress bar + + Returns: + None + """ + docs = self._filter_metadata(docs) + if verbose: + for doc in atqdm( + docs, + desc=f"Adding documents to {self.collection_name}", + total=len(docs), + ): + await self.langchain_client.aadd_documents([doc]) + else: + for doc in docs: + await self.langchain_client.aadd_documents([doc])
+ + +
+[docs] + def get_chunk( + self, query: str, with_score: bool = False, top_k: int = None + ) -> Union[List[Document], List[Tuple[Document, float]]]: + """Returns the most similar chunks from the chroma database. + + Args: + query: A query string + with_score: Outputs scores of returned chunks + top_k: Number of top similar chunks to return, if None defaults to self.top_k + + Returns: + list of Documents + + """ + if with_score: + return self.langchain_client.similarity_search_with_relevance_scores( + query=query, k=top_k if top_k else 1 + ) + else: + return self.langchain_client.similarity_search( + query=query, k=top_k if top_k else 1 + )
+ + +
+[docs] + async def aget_chunk( + self, query: str, with_score=False, top_k=None + ) -> Union[List[Document], List[Tuple[Document, float]]]: + """Returns the most (cosine) similar chunks from the vector database, asynchronously. + + Args: + query: A query string + with_score: Outputs scores of returned chunks + top_k: Number of top similar chunks to return, if None defaults to self.top_k + + Returns: + list of Documents + + """ + if with_score: + return await self.langchain_client.asimilarity_search_with_relevance_scores( + query=query, k=top_k if top_k else 1 + ) + else: + return await self.langchain_client.asimilarity_search( + query=query, k=top_k if top_k else 1 + )
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+ +
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+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/_modules/grag/components/vectordb/deeplake_client.html b/src/docs/_build/html/_modules/grag/components/vectordb/deeplake_client.html new file mode 100644 index 0000000..8991d00 --- /dev/null +++ b/src/docs/_build/html/_modules/grag/components/vectordb/deeplake_client.html @@ -0,0 +1,280 @@ + + + + + + grag.components.vectordb.deeplake_client — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + +
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+ +

Source code for grag.components.vectordb.deeplake_client

+"""Class for DeepLake vector database.
+
+This module provides:
+- DeepLakeClient
+"""
+
+from pathlib import Path
+from typing import List, Tuple, Union
+
+from grag.components.embedding import Embedding
+from grag.components.utils import get_config
+from grag.components.vectordb.base import VectorDB
+from langchain_community.vectorstores import DeepLake
+from langchain_core.documents import Document
+from tqdm import tqdm
+from tqdm.asyncio import tqdm as atqdm
+
+deeplake_conf = get_config()["deeplake"]
+
+
+
+[docs] +class DeepLakeClient(VectorDB): + """A class for connecting to a DeepLake Vectorstore. + + Attributes: + store_path : str, Path + The path to store the DeepLake vectorstore. + embedding_type : str + type of embedding used, supported 'sentence-transformers' and 'instructor-embedding' + embedding_model : str + model name of embedding used, should correspond to the embedding_type + embedding_function + a function of the embedding model, derived from the embedding_type and embedding_modelname + client: deeplake.core.vectorstore.VectorStore + DeepLake API + collection + Chroma API for the collection + langchain_client: langchain_community.vectorstores.DeepLake + LangChain wrapper for DeepLake API + """ + + def __init__( + self, + collection_name: str = deeplake_conf["collection_name"], + store_path: Union[str, Path] = deeplake_conf["store_path"], + embedding_type: str = deeplake_conf["embedding_type"], + embedding_model: str = deeplake_conf["embedding_model"], + read_only: bool = False, + ): + """Initialize DeepLake client object.""" + self.store_path = Path(store_path) + self.collection_name = collection_name + self.read_only = read_only + self.embedding_type: str = embedding_type + self.embedding_model: str = embedding_model + + self.embedding_function = Embedding( + embedding_model=self.embedding_model, embedding_type=self.embedding_type + ).embedding_function + + # self.client = VectorStore(path=self.store_path / self.collection_name) + self.langchain_client = DeepLake( + dataset_path=str(self.store_path / self.collection_name), + embedding=self.embedding_function, + read_only=self.read_only, + ) + self.client = self.langchain_client.vectorstore + self.allowed_metadata_types = (str, int, float, bool) + + def __len__(self) -> int: + """Number of chunks in the vector database.""" + return self.client.__len__() + +
+[docs] + def delete(self) -> None: + """Delete all chunks in the vector database.""" + self.client.delete(delete_all=True)
+ + +
+[docs] + def add_docs(self, docs: List[Document], verbose=True) -> None: + """Adds documents to deeplake vectorstore. + + Args: + docs: List of Documents + verbose: Show progress bar + + Returns: + None + """ + docs = self._filter_metadata(docs) + for doc in ( + tqdm(docs, desc=f"Adding to {self.collection_name}:") if verbose else docs + ): + _id = self.langchain_client.add_documents([doc])
+ + +
+[docs] + async def aadd_docs(self, docs: List[Document], verbose=True) -> None: + """Asynchronously adds documents to chroma vectorstore. + + Args: + docs: List of Documents + verbose: Show progress bar + + Returns: + None + """ + docs = self._filter_metadata(docs) + if verbose: + for doc in atqdm( + docs, + desc=f"Adding documents to {self.collection_name}", + total=len(docs), + ): + await self.langchain_client.aadd_documents([doc]) + else: + for doc in docs: + await self.langchain_client.aadd_documents([doc])
+ + +
+[docs] + def get_chunk( + self, query: str, with_score: bool = False, top_k: int = None + ) -> Union[List[Document], List[Tuple[Document, float]]]: + """Returns the most similar chunks from the deeplake database. + + Args: + query: A query string + with_score: Outputs scores of returned chunks + top_k: Number of top similar chunks to return, if None defaults to self.top_k + + Returns: + list of Documents + + """ + if with_score: + return self.langchain_client.similarity_search_with_score( + query=query, k=top_k if top_k else 1 + ) + else: + return self.langchain_client.similarity_search( + query=query, k=top_k if top_k else 1 + )
+ + +
+[docs] + async def aget_chunk( + self, query: str, with_score=False, top_k=None + ) -> Union[List[Document], List[Tuple[Document, float]]]: + """Returns the most similar chunks from the deeplake database, asynchronously. + + Args: + query: A query string + with_score: Outputs scores of returned chunks + top_k: Number of top similar chunks to return, if None defaults to self.top_k + + Returns: + list of Documents + + """ + if with_score: + return await self.langchain_client.asimilarity_search_with_score( + query=query, k=top_k if top_k else 1 + ) + else: + return await self.langchain_client.asimilarity_search( + query=query, k=top_k if top_k else 1 + )
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+ +
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+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/_modules/grag/quantize/utils.html b/src/docs/_build/html/_modules/grag/quantize/utils.html new file mode 100644 index 0000000..14e9b19 --- /dev/null +++ b/src/docs/_build/html/_modules/grag/quantize/utils.html @@ -0,0 +1,250 @@ + + + + + + grag.quantize.utils — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + +
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+ +
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+ +
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+ +

Source code for grag.quantize.utils

+"""Utility functions for quantization."""
+
+import os
+import subprocess
+from pathlib import Path
+from typing import Optional, Union
+
+from grag.components.utils import get_config
+from huggingface_hub import snapshot_download
+
+config = get_config()
+
+
+
+[docs] +def get_llamacpp_repo(root_path: Union[str, Path]) -> subprocess.CompletedProcess: + """Clones or pulls the llama.cpp repository into the specified root path. + + Args: + root_path: The root directory where the llama.cpp repository will be cloned or updated. + + Returns: + A subprocess.CompletedProcess instance containing the result of the git operation. + """ + if os.path.exists(f"{root_path}/llama.cpp"): + print(f"Repo exists at: {root_path}/llama.cpp") + res = subprocess.run( + ["git", "-C", f"{root_path}/llama.cpp", "pull"], + check=True, + capture_output=True, + ) + else: + res = subprocess.run( + [ + "git", + "clone", + "https://github.com/ggerganov/llama.cpp.git", + f"{root_path}/llama.cpp", + ], + check=True, + capture_output=True, + ) + + return res
+ + + +
+[docs] +def building_llamacpp(root_path: Union[str, Path]) -> None: + """Attempts to build the llama.cpp project using make or cmake. + + Args: + root_path (str): The root directory where the llama.cpp project is located. + """ + os.chdir(f"{root_path}/llama.cpp/") + try: + subprocess.run(["which", "make"], check=True, stdout=subprocess.DEVNULL) + subprocess.run(["make", "LLAMA_CUBLAS=1"], check=True) + print("Llama.cpp build successful.") + except subprocess.CalledProcessError: + try: + subprocess.run(["which", "cmake"], check=True, stdout=subprocess.DEVNULL) + subprocess.run(["mkdir", "build"], check=True) + subprocess.run( + [ + "cd", + "build", + "&&", + "cmake", + "..", + "-DLLAMA_CUBLAS=ON", + "&&", + "cmake", + "--build", + ".", + "--config", + "Release", + ], + shell=True, + check=True, + ) + print("Llama.cpp build successful.") + except subprocess.CalledProcessError: + print("Unable to build, cannot find make or cmake.") + finally: + os.chdir( + Path(__file__).parent + ) # Assuming you want to return to the root path after operation
+ + + +
+[docs] +def fetch_model_repo(repo_id: str, root_path: Union[str, Path]) -> None: + """Download model from huggingface.co/models. + + Args: + repo_id (str): Repository ID of the model to download. + root_path (str): The root path where the model should be downloaded or copied. + """ + local_dir = f"{root_path}/llama.cpp/models/{repo_id.split('/')[1]}" + os.makedirs(local_dir, exist_ok=True) + snapshot_download( + repo_id=repo_id, + local_dir=local_dir, + local_dir_use_symlinks="auto", + resume_download=True, + ) + print(f"Model downloaded in {local_dir}")
+ + + +
+[docs] +def quantize_model( + model_dir_path: Union[str, Path], + quantization: str, + root_path: Union[str, Path], + output_dir: Optional[Union[str, Path]] = None, +) -> None: + """Quantizes a specified model using a given quantization level. + + Args: + output_dir (str, Path, optional): Directory to save quantized model. Defaults to None + model_dir_path (str, Path): The directory path of the model to be quantized. + quantization (str): The quantization level to apply. + root_path (str, Path): The root directory path of the project. + """ + os.chdir(f"{root_path}/llama.cpp/") + model_dir_path = Path(model_dir_path) + if output_dir is None: + output_dir = config["llm"]["base_dir"] + + output_dir = Path(output_dir) / model_dir_path.name + os.makedirs(output_dir, exist_ok=True) + + subprocess.run(["python3", "convert.py", f"{model_dir_path}/"], check=True) + model_file = model_dir_path / "ggml-model-f32.gguf" + quantized_model_file = output_dir / f"ggml-model-{quantization}.gguf" + subprocess.run( + ["./quantize", str(model_file), str(quantized_model_file), quantization], + check=True, + ) + print(f"Quantized model present at {output_dir}") + os.chdir(Path(__file__).parent) # Return to the root path after operation
+ +
+ +
+
+ +
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+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/_modules/grag/rag/basic_rag.html b/src/docs/_build/html/_modules/grag/rag/basic_rag.html new file mode 100644 index 0000000..14a30c5 --- /dev/null +++ b/src/docs/_build/html/_modules/grag/rag/basic_rag.html @@ -0,0 +1,336 @@ + + + + + + grag.rag.basic_rag — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
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+ +
+
+
+
+ +

Source code for grag.rag.basic_rag

+"""Class for Basic RAG.
+
+This module provides:
+- BasicRAG
+"""
+
+import json
+from typing import List, Optional, Union
+
+from grag import prompts
+from grag.components.llm import LLM
+from grag.components.multivec_retriever import Retriever
+from grag.components.prompt import FewShotPrompt, Prompt
+from grag.components.utils import get_config
+from importlib_resources import files
+from langchain_core.documents import Document
+
+conf = get_config()
+
+
+
+[docs] +class BasicRAG: + """Class for Basis RAG. + + Attributes: + model_name (str): Name of the llm model + doc_chain (str): Name of the document chain, ("stuff", "refine"), defaults to "stuff" + task (str): Name of task, defaults to "QA" + llm_kwargs (dict): Keyword arguments for LLM class + retriever_kwargs (dict): Keyword arguments for Retriever class + custom_prompt (Prompt): Prompt, defaults to None + """ + + def __init__( + self, + retriever: Optional[Retriever] = None, + model_name=None, + doc_chain="stuff", + task="QA", + llm_kwargs=None, + retriever_kwargs=None, + custom_prompt: Union[Prompt, FewShotPrompt, None] = None, + ): + """Initialize BasicRAG.""" + if retriever is None: + if retriever_kwargs is None: + self.retriever = Retriever() + else: + self.retriever = Retriever(**retriever_kwargs) + else: + self.retriever = retriever + + if llm_kwargs is None: + self.llm_ = LLM() + else: + self.llm_ = LLM(**llm_kwargs) + + self.prompt_path = files(prompts) + self.custom_prompt = custom_prompt + + self._task = "QA" + self.model_name = model_name + self.doc_chain = doc_chain + self.task = task + + if self.custom_prompt is None: + self.main_prompt = Prompt.load( + self.prompt_path.joinpath(self.main_prompt_name) + ) + + if self.doc_chain == "refine": + self.refine_prompt = Prompt.load( + self.prompt_path.joinpath(self.refine_prompt_name) + ) + else: + self.main_prompt = self.custom_prompt + + @property + def model_name(self): + """Return the name of the model.""" + return self._model_name + + @model_name.setter + def model_name(self, value): + if value is None: + self.llm = self.llm_.load_model() + self._model_name = conf["llm"]["model_name"] + else: + self._model_name = value + self.llm = self.llm_.load_model(model_name=self.model_name) + + @property + def doc_chain(self): + """Returns the doc_chain.""" + return self._doc_chain + + @doc_chain.setter + def doc_chain(self, value): + _allowed_doc_chains = ["refine", "stuff"] + if value not in _allowed_doc_chains: + raise ValueError( + f"Doc chain {value} is not allowed. Available choices: {_allowed_doc_chains}" + ) + self._doc_chain = value + if value == "refine": + if self.custom_prompt is not None: + assert len(self.custom_prompt) == 2, ValueError( + f"Refine chain needs 2 custom prompts. {len(self.custom_prompt)} custom prompts were given." + ) + self.prompt_matcher() + + @property + def task(self): + """Returns the task.""" + return self._task + + @task.setter + def task(self, value): + _allowed_tasks = ["QA"] + if value not in _allowed_tasks: + raise ValueError( + f"Task {value} is not allowed. Available tasks: {_allowed_tasks}" + ) + self._task = value + self.prompt_matcher() + +
+[docs] + def prompt_matcher(self): + """Matches relvant prompt using model, task and doc_chain.""" + matcher_path = self.prompt_path.joinpath("matcher.json") + with open(f"{matcher_path}", "r") as f: + matcher_dict = json.load(f) + try: + self.model_type = matcher_dict[self.model_name] + except KeyError: + raise ValueError( + f"Prompt for {self.model_name} not found in {matcher_path}" + ) + + self.main_prompt_name = f"{self.model_type}_{self.task}_1.json" + self.refine_prompt_name = f"{self.model_type}_{self.task}-refine_1.json" + if self.custom_prompt is None: + self.main_prompt = Prompt.load( + self.prompt_path.joinpath(self.main_prompt_name) + ) + if self.doc_chain == "refine": + self.refine_prompt = Prompt.load( + self.prompt_path.joinpath(self.refine_prompt_name) + )
+ + +
+[docs] + @staticmethod + def stuff_docs(docs: List[Document]) -> str: + r"""Concatenates docs into a string seperated by '\n\n'. + + Args: + docs: List of langchain_core.documents.Document + + Returns: + string of document page content joined by '\n\n' + """ + return "\n\n".join([doc.page_content for doc in docs])
+ + +
+[docs] + @staticmethod + def output_parser(call_func): + """Decorator to format llm output.""" + + def output_parser_wrapper(*args, **kwargs): + response, sources = call_func(*args, **kwargs) + if conf["llm"]["std_out"] == "False": + # if self.llm_.callback_manager is None: + print(response) + print("Sources: ") + for index, source in enumerate(sources): + print(f"\t{index}: {source}") + return response, sources + + return output_parser_wrapper
+ + +
+[docs] + @output_parser + def stuff_call(self, query: str): + """Call function for stuff chain.""" + retrieved_docs = self.retriever.get_chunk(query) + context = self.stuff_docs(retrieved_docs) + prompt = self.main_prompt.format(context=context, question=query) + response = self.llm.invoke(prompt) + sources = [doc.metadata["source"] for doc in retrieved_docs] + return response, sources
+ + +
+[docs] + @output_parser + def refine_call(self, query: str): + """Call function for refine chain.""" + retrieved_docs = self.retriever.get_chunk(query) + sources = [doc.metadata["source"] for doc in retrieved_docs] + responses = [] + for index, doc in enumerate(retrieved_docs): + if index == 0: + prompt = self.main_prompt.format( + context=doc.page_content, question=query + ) + response = self.llm.invoke(prompt) + responses.append(response) + else: + prompt = self.refine_prompt.format( + context=doc.page_content, + question=query, + existing_answer=responses[-1], + ) + response = self.llm.invoke(prompt) + responses.append(response) + return responses, sources
+ + + def __call__(self, query: str): + """Call function for the class.""" + if self.doc_chain == "stuff": + return self.stuff_call(query) + elif self.doc_chain == "refine": + return self.refine_call(query)
+ +
+ +
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+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/_modules/index.html b/src/docs/_build/html/_modules/index.html new file mode 100644 index 0000000..d3861e6 --- /dev/null +++ b/src/docs/_build/html/_modules/index.html @@ -0,0 +1,114 @@ + + + + + + Overview: module code — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + +
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+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/_sources/grag.components.rst.txt b/src/docs/_build/html/_sources/grag.components.rst.txt new file mode 100644 index 0000000..d4c09c2 --- /dev/null +++ b/src/docs/_build/html/_sources/grag.components.rst.txt @@ -0,0 +1,77 @@ +grag.components package +======================= + +Subpackages +----------- + +.. toctree:: + :maxdepth: 4 + + grag.components.vectordb + +Submodules +---------- + +grag.components.embedding module +-------------------------------- + +.. automodule:: grag.components.embedding + :members: + :undoc-members: + :show-inheritance: + +grag.components.llm module +-------------------------- + +.. automodule:: grag.components.llm + :members: + :undoc-members: + :show-inheritance: + +grag.components.multivec\_retriever module +------------------------------------------ + +.. automodule:: grag.components.multivec_retriever + :members: + :undoc-members: + :show-inheritance: + +grag.components.parse\_pdf module +--------------------------------- + +.. automodule:: grag.components.parse_pdf + :members: + :undoc-members: + :show-inheritance: + +grag.components.prompt module +----------------------------- + +.. automodule:: grag.components.prompt + :members: + :undoc-members: + :show-inheritance: + +grag.components.text\_splitter module +------------------------------------- + +.. automodule:: grag.components.text_splitter + :members: + :undoc-members: + :show-inheritance: + +grag.components.utils module +---------------------------- + +.. automodule:: grag.components.utils + :members: + :undoc-members: + :show-inheritance: + +Module contents +--------------- + +.. automodule:: grag.components + :members: + :undoc-members: + :show-inheritance: diff --git a/src/docs/_build/html/_sources/grag.components.vectordb.rst.txt b/src/docs/_build/html/_sources/grag.components.vectordb.rst.txt new file mode 100644 index 0000000..f7c1c56 --- /dev/null +++ b/src/docs/_build/html/_sources/grag.components.vectordb.rst.txt @@ -0,0 +1,37 @@ +grag.components.vectordb package +================================ + +Submodules +---------- + +grag.components.vectordb.base module +------------------------------------ + +.. automodule:: grag.components.vectordb.base + :members: + :undoc-members: + :show-inheritance: + +grag.components.vectordb.chroma\_client module +---------------------------------------------- + +.. automodule:: grag.components.vectordb.chroma_client + :members: + :undoc-members: + :show-inheritance: + +grag.components.vectordb.deeplake\_client module +------------------------------------------------ + +.. automodule:: grag.components.vectordb.deeplake_client + :members: + :undoc-members: + :show-inheritance: + +Module contents +--------------- + +.. automodule:: grag.components.vectordb + :members: + :undoc-members: + :show-inheritance: diff --git a/src/docs/_build/html/_sources/grag.prompts.rst.txt b/src/docs/_build/html/_sources/grag.prompts.rst.txt new file mode 100644 index 0000000..56f2b49 --- /dev/null +++ b/src/docs/_build/html/_sources/grag.prompts.rst.txt @@ -0,0 +1,10 @@ +grag.prompts package +==================== + +Module contents +--------------- + +.. automodule:: grag.prompts + :members: + :undoc-members: + :show-inheritance: diff --git a/src/docs/_build/html/_sources/grag.quantize.rst.txt b/src/docs/_build/html/_sources/grag.quantize.rst.txt new file mode 100644 index 0000000..eaaa0e8 --- /dev/null +++ b/src/docs/_build/html/_sources/grag.quantize.rst.txt @@ -0,0 +1,29 @@ +grag.quantize package +===================== + +Submodules +---------- + +grag.quantize.quantize module +----------------------------- + +.. automodule:: grag.quantize.quantize + :members: + :undoc-members: + :show-inheritance: + +grag.quantize.utils module +-------------------------- + +.. automodule:: grag.quantize.utils + :members: + :undoc-members: + :show-inheritance: + +Module contents +--------------- + +.. automodule:: grag.quantize + :members: + :undoc-members: + :show-inheritance: diff --git a/src/docs/_build/html/_sources/grag.rag.rst.txt b/src/docs/_build/html/_sources/grag.rag.rst.txt new file mode 100644 index 0000000..33c8f39 --- /dev/null +++ b/src/docs/_build/html/_sources/grag.rag.rst.txt @@ -0,0 +1,21 @@ +grag.rag package +================ + +Submodules +---------- + +grag.rag.basic\_rag module +-------------------------- + +.. automodule:: grag.rag.basic_rag + :members: + :undoc-members: + :show-inheritance: + +Module contents +--------------- + +.. automodule:: grag.rag + :members: + :undoc-members: + :show-inheritance: diff --git a/src/docs/_build/html/_sources/grag.rst.txt b/src/docs/_build/html/_sources/grag.rst.txt new file mode 100644 index 0000000..995ecce --- /dev/null +++ b/src/docs/_build/html/_sources/grag.rst.txt @@ -0,0 +1,21 @@ +grag package +============ + +Subpackages +----------- + +.. toctree:: + :maxdepth: 4 + + grag.components + grag.prompts + grag.quantize + grag.rag + +Module contents +--------------- + +.. automodule:: grag + :members: + :undoc-members: + :show-inheritance: diff --git a/src/docs/_build/html/_sources/index.rst.txt b/src/docs/_build/html/_sources/index.rst.txt new file mode 100644 index 0000000..c1b351d --- /dev/null +++ b/src/docs/_build/html/_sources/index.rst.txt @@ -0,0 +1,20 @@ +.. GRAG documentation master file, created by +sphinx-quickstart on Wed Mar 27 13:21:21 2024. +You can adapt this file completely to your liking, but it should at least +contain the root `toctree` directive. + +Welcome to GRAG's documentation! +================================ + +.. toctree:: + :maxdepth: 2 + :caption: Contents: + + grag + +Indices and tables +================== + +* :ref:`genindex` +* :ref:`modindex` +* :ref:`search` diff --git a/src/docs/_build/html/_sources/modules.rst.txt b/src/docs/_build/html/_sources/modules.rst.txt new file mode 100644 index 0000000..6fb3ecc --- /dev/null +++ b/src/docs/_build/html/_sources/modules.rst.txt @@ -0,0 +1,7 @@ +grag +==== + +.. toctree:: + :maxdepth: 4 + + grag diff --git a/src/docs/_build/html/_static/_sphinx_javascript_frameworks_compat.js b/src/docs/_build/html/_static/_sphinx_javascript_frameworks_compat.js new file mode 100644 index 0000000..8141580 --- /dev/null +++ b/src/docs/_build/html/_static/_sphinx_javascript_frameworks_compat.js @@ -0,0 +1,123 @@ +/* Compatability shim for jQuery and underscores.js. + * + * Copyright Sphinx contributors + * Released under the two clause BSD licence + */ + +/** + * small helper function to urldecode strings + * + * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL + */ +jQuery.urldecode = function(x) { + if (!x) { + return x + } + return decodeURIComponent(x.replace(/\+/g, ' ')); +}; + +/** + * small helper function to urlencode strings + */ +jQuery.urlencode = encodeURIComponent; + +/** + * This function returns the parsed url parameters of the + * current request. Multiple values per key are supported, + * it will always return arrays of strings for the value parts. + */ +jQuery.getQueryParameters = function(s) { + if (typeof s === 'undefined') + s = document.location.search; + var parts = s.substr(s.indexOf('?') + 1).split('&'); + var result = {}; + for (var i = 0; i < parts.length; i++) { + var tmp = parts[i].split('=', 2); + var key = jQuery.urldecode(tmp[0]); + var value = jQuery.urldecode(tmp[1]); + if (key in result) + result[key].push(value); + else + result[key] = [value]; + } + return result; +}; + +/** + * highlight a given string on a jquery object by wrapping it in + * span elements with the given class name. + */ +jQuery.fn.highlightText = function(text, className) { + function highlight(node, addItems) { + if (node.nodeType === 3) { + var val = node.nodeValue; + var pos = val.toLowerCase().indexOf(text); + if (pos >= 0 && + !jQuery(node.parentNode).hasClass(className) && + !jQuery(node.parentNode).hasClass("nohighlight")) { + var span; + var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg"); + if (isInSVG) { + span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); + } else { + span = document.createElement("span"); + span.className = className; + } + span.appendChild(document.createTextNode(val.substr(pos, text.length))); + node.parentNode.insertBefore(span, node.parentNode.insertBefore( + document.createTextNode(val.substr(pos + text.length)), + node.nextSibling)); + node.nodeValue = val.substr(0, pos); + if (isInSVG) { + var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect"); + var bbox = node.parentElement.getBBox(); + rect.x.baseVal.value = bbox.x; + rect.y.baseVal.value = bbox.y; + rect.width.baseVal.value = bbox.width; + rect.height.baseVal.value = bbox.height; + rect.setAttribute('class', className); + addItems.push({ + "parent": node.parentNode, + "target": rect}); + } + } + } + else if (!jQuery(node).is("button, select, textarea")) { + jQuery.each(node.childNodes, function() { + highlight(this, addItems); + }); + } + } + var addItems = []; + var result = this.each(function() { + highlight(this, addItems); + }); + for (var i = 0; i < addItems.length; ++i) { + jQuery(addItems[i].parent).before(addItems[i].target); + } + return result; +}; + +/* + * backward compatibility for jQuery.browser + * This will be supported until firefox bug is fixed. + */ +if (!jQuery.browser) { + jQuery.uaMatch = function(ua) { + ua = ua.toLowerCase(); + + var match = /(chrome)[ \/]([\w.]+)/.exec(ua) || + /(webkit)[ \/]([\w.]+)/.exec(ua) || + /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) || + /(msie) ([\w.]+)/.exec(ua) || + ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) || + []; + + return { + browser: match[ 1 ] || "", + version: match[ 2 ] || "0" + }; + }; + jQuery.browser = {}; + jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true; +} diff --git a/src/docs/_build/html/_static/autoclasstoc.css b/src/docs/_build/html/_static/autoclasstoc.css new file mode 100644 index 0000000..8fbfd84 --- /dev/null +++ b/src/docs/_build/html/_static/autoclasstoc.css @@ -0,0 +1,12 @@ +.autoclasstoc table.docutils td>p { + margin-bottom: 0 !important; +} + +.autoclasstoc details:last-of-type { + margin-bottom: 18px; +} + +.autoclasstoc .wy-table-responsive { + margin-bottom: 12px; +} + diff --git a/src/docs/_build/html/_static/basic.css b/src/docs/_build/html/_static/basic.css new file mode 100644 index 0000000..30fee9d --- /dev/null +++ b/src/docs/_build/html/_static/basic.css @@ -0,0 +1,925 @@ +/* + * basic.css + * ~~~~~~~~~ + * + * Sphinx stylesheet -- basic theme. + * + * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :license: BSD, see LICENSE for details. + * + */ + +/* -- main layout ----------------------------------------------------------- */ + +div.clearer { + clear: both; +} + +div.section::after { + display: block; + content: ''; + clear: left; +} + +/* -- relbar ---------------------------------------------------------------- */ + +div.related { + width: 100%; + font-size: 90%; +} + +div.related h3 { + display: none; +} + +div.related ul { + margin: 0; + padding: 0 0 0 10px; + list-style: none; +} + +div.related li { + display: inline; +} + +div.related li.right { + float: right; + margin-right: 5px; +} + +/* -- sidebar --------------------------------------------------------------- */ + +div.sphinxsidebarwrapper { + padding: 10px 5px 0 10px; +} + +div.sphinxsidebar { + float: left; + width: 230px; + margin-left: -100%; + font-size: 90%; + word-wrap: break-word; + overflow-wrap : break-word; +} + +div.sphinxsidebar ul { + list-style: none; +} + +div.sphinxsidebar ul ul, +div.sphinxsidebar ul.want-points { + margin-left: 20px; + list-style: square; +} + +div.sphinxsidebar ul ul { + margin-top: 0; + margin-bottom: 0; +} + +div.sphinxsidebar form { + margin-top: 10px; +} + +div.sphinxsidebar input { + border: 1px solid #98dbcc; + font-family: sans-serif; + font-size: 1em; +} + +div.sphinxsidebar #searchbox form.search { + overflow: hidden; +} + +div.sphinxsidebar #searchbox input[type="text"] { + float: left; + width: 80%; + padding: 0.25em; + box-sizing: border-box; +} + +div.sphinxsidebar #searchbox input[type="submit"] { + float: left; + width: 20%; + border-left: none; + padding: 0.25em; + box-sizing: border-box; +} + + +img { + border: 0; + max-width: 100%; +} + +/* -- search page ----------------------------------------------------------- */ + +ul.search { + margin: 10px 0 0 20px; + padding: 0; +} + +ul.search li { + padding: 5px 0 5px 20px; + background-image: url(file.png); + background-repeat: no-repeat; + background-position: 0 7px; +} + +ul.search li a { + font-weight: bold; +} + +ul.search li p.context { + color: #888; + margin: 2px 0 0 30px; + text-align: left; +} + +ul.keywordmatches li.goodmatch a { + font-weight: bold; +} + +/* -- index page ------------------------------------------------------------ */ + +table.contentstable { + width: 90%; + margin-left: auto; + margin-right: auto; +} + +table.contentstable p.biglink { + line-height: 150%; +} + +a.biglink { + font-size: 1.3em; +} + +span.linkdescr { + font-style: italic; + padding-top: 5px; + font-size: 90%; +} + +/* -- general index --------------------------------------------------------- */ + +table.indextable { + width: 100%; +} + +table.indextable td { + text-align: left; + vertical-align: top; +} + +table.indextable ul { + margin-top: 0; + margin-bottom: 0; + list-style-type: none; +} + +table.indextable > tbody > tr > td > ul { + padding-left: 0em; +} + +table.indextable tr.pcap { + height: 10px; +} + +table.indextable tr.cap { + margin-top: 10px; + background-color: #f2f2f2; +} + +img.toggler { + margin-right: 3px; + margin-top: 3px; + cursor: pointer; +} + +div.modindex-jumpbox { + border-top: 1px solid #ddd; + border-bottom: 1px solid #ddd; + margin: 1em 0 1em 0; + padding: 0.4em; +} + +div.genindex-jumpbox { + border-top: 1px solid #ddd; + border-bottom: 1px solid #ddd; + margin: 1em 0 1em 0; + padding: 0.4em; +} + +/* -- domain module index --------------------------------------------------- */ + +table.modindextable td { + padding: 2px; + border-collapse: collapse; +} + +/* -- general body styles --------------------------------------------------- */ + +div.body { + min-width: 360px; + max-width: 800px; +} + +div.body p, div.body dd, div.body li, div.body blockquote { + -moz-hyphens: auto; + -ms-hyphens: auto; + -webkit-hyphens: auto; + hyphens: auto; +} + +a.headerlink { + visibility: hidden; +} + +a:visited { + color: #551A8B; +} + +h1:hover > a.headerlink, +h2:hover > a.headerlink, +h3:hover > a.headerlink, +h4:hover > a.headerlink, +h5:hover > a.headerlink, +h6:hover > a.headerlink, +dt:hover > a.headerlink, +caption:hover > a.headerlink, +p.caption:hover > a.headerlink, +div.code-block-caption:hover > a.headerlink { + visibility: visible; +} + +div.body p.caption { + text-align: inherit; +} + +div.body td { + text-align: left; +} + +.first { + margin-top: 0 !important; +} + +p.rubric { + margin-top: 30px; + font-weight: bold; +} + +img.align-left, figure.align-left, .figure.align-left, object.align-left { + clear: left; + float: left; + margin-right: 1em; +} + +img.align-right, figure.align-right, .figure.align-right, object.align-right { + clear: right; + float: right; + margin-left: 1em; +} + +img.align-center, figure.align-center, .figure.align-center, object.align-center { + display: block; + margin-left: auto; + margin-right: auto; +} + +img.align-default, figure.align-default, .figure.align-default { + display: block; + margin-left: auto; + margin-right: auto; +} + +.align-left { + text-align: left; +} + +.align-center { + text-align: center; +} + +.align-default { + text-align: center; +} + +.align-right { + text-align: right; +} + +/* -- sidebars -------------------------------------------------------------- */ + +div.sidebar, +aside.sidebar { + margin: 0 0 0.5em 1em; + border: 1px solid #ddb; + padding: 7px; + background-color: #ffe; + width: 40%; + float: right; + clear: right; + overflow-x: auto; +} + +p.sidebar-title { + font-weight: bold; +} + +nav.contents, +aside.topic, +div.admonition, div.topic, blockquote { + clear: left; +} + +/* -- topics ---------------------------------------------------------------- */ + +nav.contents, +aside.topic, +div.topic { + border: 1px solid #ccc; + padding: 7px; + margin: 10px 0 10px 0; +} + +p.topic-title { + font-size: 1.1em; + font-weight: bold; + margin-top: 10px; +} + +/* -- admonitions ----------------------------------------------------------- */ + +div.admonition { + margin-top: 10px; + margin-bottom: 10px; + padding: 7px; +} + +div.admonition dt { + font-weight: bold; +} + +p.admonition-title { + margin: 0px 10px 5px 0px; + font-weight: bold; +} + +div.body p.centered { + text-align: center; + margin-top: 25px; +} + +/* -- content of sidebars/topics/admonitions -------------------------------- */ + +div.sidebar > :last-child, +aside.sidebar > :last-child, +nav.contents > :last-child, +aside.topic > :last-child, +div.topic > :last-child, +div.admonition > :last-child { + margin-bottom: 0; +} + +div.sidebar::after, +aside.sidebar::after, +nav.contents::after, +aside.topic::after, +div.topic::after, +div.admonition::after, +blockquote::after { + display: block; + content: ''; + clear: both; +} + +/* -- tables ---------------------------------------------------------------- */ + +table.docutils { + margin-top: 10px; + margin-bottom: 10px; + border: 0; + border-collapse: collapse; +} + +table.align-center { + margin-left: auto; + margin-right: auto; +} + +table.align-default { + margin-left: auto; + margin-right: auto; +} + +table caption span.caption-number { + font-style: italic; +} + +table caption span.caption-text { +} + +table.docutils td, table.docutils th { + padding: 1px 8px 1px 5px; + border-top: 0; + border-left: 0; + border-right: 0; + border-bottom: 1px solid #aaa; +} + +th { + text-align: left; + padding-right: 5px; +} + +table.citation { + border-left: solid 1px gray; + margin-left: 1px; +} + +table.citation td { + border-bottom: none; +} + +th > :first-child, +td > :first-child { + margin-top: 0px; +} + +th > :last-child, +td > :last-child { + margin-bottom: 0px; +} + +/* -- figures --------------------------------------------------------------- */ + +div.figure, figure { + margin: 0.5em; + padding: 0.5em; +} + +div.figure p.caption, figcaption { + padding: 0.3em; +} + +div.figure p.caption span.caption-number, +figcaption span.caption-number { + font-style: italic; +} + +div.figure p.caption span.caption-text, +figcaption span.caption-text { +} + +/* -- field list styles ----------------------------------------------------- */ + +table.field-list td, table.field-list th { + border: 0 !important; +} + +.field-list ul { + margin: 0; + padding-left: 1em; +} + +.field-list p { + margin: 0; +} + +.field-name { + -moz-hyphens: manual; + -ms-hyphens: manual; + -webkit-hyphens: manual; + hyphens: manual; +} + +/* -- hlist styles ---------------------------------------------------------- */ + +table.hlist { + margin: 1em 0; +} + +table.hlist td { + vertical-align: top; +} + +/* -- object description styles --------------------------------------------- */ + +.sig { + font-family: 'Consolas', 'Menlo', 'DejaVu Sans Mono', 'Bitstream Vera Sans Mono', monospace; +} + +.sig-name, code.descname { + background-color: transparent; + font-weight: bold; +} + +.sig-name { + font-size: 1.1em; +} + +code.descname { + font-size: 1.2em; +} + +.sig-prename, code.descclassname { + background-color: transparent; +} + +.optional { + font-size: 1.3em; +} + +.sig-paren { + font-size: larger; +} + +.sig-param.n { + font-style: italic; +} + +/* C++ specific styling */ + +.sig-inline.c-texpr, +.sig-inline.cpp-texpr { + font-family: unset; +} + +.sig.c .k, .sig.c .kt, +.sig.cpp .k, .sig.cpp .kt { + color: #0033B3; +} + +.sig.c .m, +.sig.cpp .m { + color: #1750EB; +} + +.sig.c .s, .sig.c .sc, +.sig.cpp .s, .sig.cpp .sc { + color: #067D17; +} + + +/* -- other body styles ----------------------------------------------------- */ + +ol.arabic { + list-style: decimal; +} + +ol.loweralpha { + list-style: lower-alpha; +} + +ol.upperalpha { + list-style: upper-alpha; +} + +ol.lowerroman { + list-style: lower-roman; +} + +ol.upperroman { + list-style: upper-roman; +} + +:not(li) > ol > li:first-child > :first-child, +:not(li) > ul > li:first-child > :first-child { + margin-top: 0px; +} + +:not(li) > ol > li:last-child > :last-child, +:not(li) > ul > li:last-child > :last-child { + margin-bottom: 0px; +} + +ol.simple ol p, +ol.simple ul p, +ul.simple ol p, +ul.simple ul p { + margin-top: 0; +} + +ol.simple > li:not(:first-child) > p, +ul.simple > li:not(:first-child) > p { + margin-top: 0; +} + +ol.simple p, +ul.simple p { + margin-bottom: 0; +} + +aside.footnote > span, +div.citation > span { + float: left; +} +aside.footnote > span:last-of-type, +div.citation > span:last-of-type { + padding-right: 0.5em; +} +aside.footnote > p { + margin-left: 2em; +} +div.citation > p { + margin-left: 4em; +} +aside.footnote > p:last-of-type, +div.citation > p:last-of-type { + margin-bottom: 0em; +} +aside.footnote > p:last-of-type:after, +div.citation > p:last-of-type:after { + content: ""; + clear: both; +} + +dl.field-list { + display: grid; + grid-template-columns: fit-content(30%) auto; +} + +dl.field-list > dt { + font-weight: bold; + word-break: break-word; + padding-left: 0.5em; + padding-right: 5px; +} + +dl.field-list > dd { + padding-left: 0.5em; + margin-top: 0em; + margin-left: 0em; + margin-bottom: 0em; +} + +dl { + margin-bottom: 15px; +} + +dd > :first-child { + margin-top: 0px; +} + +dd ul, dd table { + margin-bottom: 10px; +} + +dd { + margin-top: 3px; + margin-bottom: 10px; + margin-left: 30px; +} + +.sig dd { + margin-top: 0px; + margin-bottom: 0px; +} + +.sig dl { + margin-top: 0px; + margin-bottom: 0px; +} + +dl > dd:last-child, +dl > dd:last-child > :last-child { + margin-bottom: 0; +} + +dt:target, span.highlighted { + background-color: #fbe54e; +} + +rect.highlighted { + fill: #fbe54e; +} + +dl.glossary dt { + font-weight: bold; + font-size: 1.1em; +} + +.versionmodified { + font-style: italic; +} + +.system-message { + background-color: #fda; + padding: 5px; + border: 3px solid red; +} + +.footnote:target { + background-color: #ffa; +} + +.line-block { + display: block; + margin-top: 1em; + margin-bottom: 1em; +} + +.line-block .line-block { + margin-top: 0; + margin-bottom: 0; + margin-left: 1.5em; +} + +.guilabel, .menuselection { + font-family: sans-serif; +} + +.accelerator { + text-decoration: underline; +} + +.classifier { + font-style: oblique; +} + +.classifier:before { + font-style: normal; + margin: 0 0.5em; + content: ":"; + display: 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// [C]VC[V] is m=1 + var mgr1 = "^(" + C + ")?" + V + C + V + C; // [C]VCVC... is m>1 + var s_v = "^(" + C + ")?" + v; // vowel in stem + + this.stemWord = function (w) { + var stem; + var suffix; + var firstch; + var origword = w; + + if (w.length < 3) + return w; + + var re; + var re2; + var re3; + var re4; + + firstch = w.substr(0,1); + if (firstch == "y") + w = firstch.toUpperCase() + w.substr(1); + + // Step 1a + re = /^(.+?)(ss|i)es$/; + re2 = /^(.+?)([^s])s$/; + + if (re.test(w)) + w = w.replace(re,"$1$2"); + else if (re2.test(w)) + w = w.replace(re2,"$1$2"); + + // Step 1b + re = /^(.+?)eed$/; + re2 = /^(.+?)(ed|ing)$/; + if (re.test(w)) { + var fp = re.exec(w); + re = new RegExp(mgr0); + if (re.test(fp[1])) { + re = /.$/; + w = w.replace(re,""); + } + } + else if (re2.test(w)) { + var fp = re2.exec(w); + stem = fp[1]; + re2 = new RegExp(s_v); + if (re2.test(stem)) { + w = stem; + re2 = /(at|bl|iz)$/; + re3 = new RegExp("([^aeiouylsz])\\1$"); + re4 = new RegExp("^" + C + v + "[^aeiouwxy]$"); + if (re2.test(w)) + w = w + "e"; + else if (re3.test(w)) { + re = /.$/; + w = w.replace(re,""); + } + else if (re4.test(w)) + w = w + "e"; + } + } + + // Step 1c + re = /^(.+?)y$/; + if (re.test(w)) { + var fp = re.exec(w); + stem = fp[1]; + re = new RegExp(s_v); + if (re.test(stem)) + w = stem + "i"; + } + + // Step 2 + re = /^(.+?)(ational|tional|enci|anci|izer|bli|alli|entli|eli|ousli|ization|ation|ator|alism|iveness|fulness|ousness|aliti|iviti|biliti|logi)$/; + if (re.test(w)) { + var fp = re.exec(w); + stem = fp[1]; + suffix = fp[2]; + re = new RegExp(mgr0); + if (re.test(stem)) + w = stem + step2list[suffix]; + } + + // Step 3 + re = /^(.+?)(icate|ative|alize|iciti|ical|ful|ness)$/; + if (re.test(w)) { + var fp = re.exec(w); + stem = fp[1]; + suffix = fp[2]; + re = new RegExp(mgr0); + if (re.test(stem)) + w = stem + step3list[suffix]; + } + + // Step 4 + re = /^(.+?)(al|ance|ence|er|ic|able|ible|ant|ement|ment|ent|ou|ism|ate|iti|ous|ive|ize)$/; + re2 = /^(.+?)(s|t)(ion)$/; + if (re.test(w)) { + var fp = re.exec(w); + stem = fp[1]; + re = new RegExp(mgr1); + if (re.test(stem)) + w = stem; + } + else if (re2.test(w)) { + var fp = re2.exec(w); + stem = fp[1] + fp[2]; + re2 = new RegExp(mgr1); + if (re2.test(stem)) + w = stem; + } + + // Step 5 + re = /^(.+?)e$/; + if (re.test(w)) { + var fp = re.exec(w); + stem = fp[1]; + re = new RegExp(mgr1); + re2 = new RegExp(meq1); + re3 = new RegExp("^" + C + v + "[^aeiouwxy]$"); + if (re.test(stem) || (re2.test(stem) && !(re3.test(stem)))) + w = stem; + } + re = /ll$/; + re2 = new RegExp(mgr1); + if (re.test(w) && re2.test(w)) { + re = /.$/; + w = w.replace(re,""); + } + + // and turn initial Y back to y + if (firstch == "y") + w = firstch.toLowerCase() + w.substr(1); + return w; + } +} + diff --git a/src/docs/_build/html/_static/minus.png b/src/docs/_build/html/_static/minus.png new file mode 100644 index 0000000..d96755f Binary files /dev/null and b/src/docs/_build/html/_static/minus.png differ diff --git a/src/docs/_build/html/_static/plus.png b/src/docs/_build/html/_static/plus.png new file mode 100644 index 0000000..7107cec Binary files /dev/null and b/src/docs/_build/html/_static/plus.png differ diff --git a/src/docs/_build/html/_static/pygments.css b/src/docs/_build/html/_static/pygments.css new file mode 100644 index 0000000..08bec68 --- /dev/null +++ b/src/docs/_build/html/_static/pygments.css @@ -0,0 +1,74 @@ +pre { line-height: 125%; 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+ +/** + * Simple result scoring code. + */ +if (typeof Scorer === "undefined") { + var Scorer = { + // Implement the following function to further tweak the score for each result + // The function takes a result array [docname, title, anchor, descr, score, filename] + // and returns the new score. + /* + score: result => { + const [docname, title, anchor, descr, score, filename] = result + return score + }, + */ + + // query matches the full name of an object + objNameMatch: 11, + // or matches in the last dotted part of the object name + objPartialMatch: 6, + // Additive scores depending on the priority of the object + objPrio: { + 0: 15, // used to be importantResults + 1: 5, // used to be objectResults + 2: -5, // used to be unimportantResults + }, + // Used when the priority is not in the mapping. + objPrioDefault: 0, + + // query found in title + title: 15, + partialTitle: 7, + // query found in terms + term: 5, + partialTerm: 2, + }; +} + +const _removeChildren = (element) => { + while (element && element.lastChild) element.removeChild(element.lastChild); +}; + +/** + * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions#escaping + */ +const _escapeRegExp = (string) => + string.replace(/[.*+\-?^${}()|[\]\\]/g, "\\$&"); // $& means the whole matched string + +const _displayItem = (item, searchTerms, highlightTerms) => { + const docBuilder = DOCUMENTATION_OPTIONS.BUILDER; + const docFileSuffix = DOCUMENTATION_OPTIONS.FILE_SUFFIX; + const docLinkSuffix = DOCUMENTATION_OPTIONS.LINK_SUFFIX; + const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY; + const contentRoot = document.documentElement.dataset.content_root; + + const [docName, title, anchor, descr, score, _filename] = item; + + let listItem = document.createElement("li"); + let requestUrl; + let linkUrl; + if (docBuilder === "dirhtml") { + // dirhtml builder + let dirname = docName + "/"; + if (dirname.match(/\/index\/$/)) + dirname = dirname.substring(0, dirname.length - 6); + else if (dirname === "index/") dirname = ""; + requestUrl = contentRoot + dirname; + linkUrl = requestUrl; + } else { + // normal html builders + requestUrl = contentRoot + docName + docFileSuffix; + linkUrl = docName + docLinkSuffix; + } + let linkEl = listItem.appendChild(document.createElement("a")); + linkEl.href = linkUrl + anchor; + linkEl.dataset.score = score; + linkEl.innerHTML = title; + if (descr) { + listItem.appendChild(document.createElement("span")).innerHTML = + " (" + descr + ")"; + // highlight search terms in the description + if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js + highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted")); + } + else if (showSearchSummary) + fetch(requestUrl) + .then((responseData) => responseData.text()) + .then((data) => { + if (data) + listItem.appendChild( + Search.makeSearchSummary(data, searchTerms) + ); + // highlight search terms in the summary + if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js + highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted")); + }); + Search.output.appendChild(listItem); +}; +const _finishSearch = (resultCount) => { + Search.stopPulse(); + Search.title.innerText = _("Search Results"); + if (!resultCount) + Search.status.innerText = Documentation.gettext( + "Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories." + ); + else + Search.status.innerText = _( + `Search finished, found ${resultCount} page(s) matching the search query.` + ); +}; +const _displayNextItem = ( + results, + resultCount, + searchTerms, + highlightTerms, +) => { + // results left, load the summary and display it + // this is intended to be dynamic (don't sub resultsCount) + if (results.length) { + _displayItem(results.pop(), searchTerms, highlightTerms); + setTimeout( + () => _displayNextItem(results, resultCount, searchTerms, highlightTerms), + 5 + ); + } + // search finished, update title and status message + else _finishSearch(resultCount); +}; + +/** + * Default splitQuery function. Can be overridden in ``sphinx.search`` with a + * custom function per language. + * + * The regular expression works by splitting the string on consecutive characters + * that are not Unicode letters, numbers, underscores, or emoji characters. + * This is the same as ``\W+`` in Python, preserving the surrogate pair area. + */ +if (typeof splitQuery === "undefined") { + var splitQuery = (query) => query + .split(/[^\p{Letter}\p{Number}_\p{Emoji_Presentation}]+/gu) + .filter(term => term) // remove remaining empty strings +} + +/** + * Search Module + */ +const Search = { + _index: null, + _queued_query: null, + _pulse_status: -1, + + htmlToText: (htmlString) => { + const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html'); + htmlElement.querySelectorAll(".headerlink").forEach((el) => { el.remove() }); + const docContent = htmlElement.querySelector('[role="main"]'); + if (docContent !== undefined) return docContent.textContent; + console.warn( + "Content block not found. Sphinx search tries to obtain it via '[role=main]'. Could you check your theme or template." + ); + return ""; + }, + + init: () => { + const query = new URLSearchParams(window.location.search).get("q"); + document + .querySelectorAll('input[name="q"]') + .forEach((el) => (el.value = query)); + if (query) Search.performSearch(query); + }, + + loadIndex: (url) => + (document.body.appendChild(document.createElement("script")).src = url), + + setIndex: (index) => { + Search._index = index; + if (Search._queued_query !== null) { + const query = Search._queued_query; + Search._queued_query = null; + Search.query(query); + } + }, + + hasIndex: () => Search._index !== null, + + deferQuery: (query) => (Search._queued_query = query), + + stopPulse: () => (Search._pulse_status = -1), + + startPulse: () => { + if (Search._pulse_status >= 0) return; + + const pulse = () => { + Search._pulse_status = (Search._pulse_status + 1) % 4; + Search.dots.innerText = ".".repeat(Search._pulse_status); + if (Search._pulse_status >= 0) window.setTimeout(pulse, 500); + }; + pulse(); + }, + + /** + * perform a search for something (or wait until index is loaded) + */ + performSearch: (query) => { + // create the required interface elements + const searchText = document.createElement("h2"); + searchText.textContent = _("Searching"); + const searchSummary = document.createElement("p"); + searchSummary.classList.add("search-summary"); + searchSummary.innerText = ""; + const searchList = document.createElement("ul"); + searchList.classList.add("search"); + + const out = document.getElementById("search-results"); + Search.title = out.appendChild(searchText); + Search.dots = Search.title.appendChild(document.createElement("span")); + Search.status = out.appendChild(searchSummary); + Search.output = out.appendChild(searchList); + + const searchProgress = document.getElementById("search-progress"); + // Some themes don't use the search progress node + if (searchProgress) { + searchProgress.innerText = _("Preparing search..."); + } + Search.startPulse(); + + // index already loaded, the browser was quick! + if (Search.hasIndex()) Search.query(query); + else Search.deferQuery(query); + }, + + /** + * execute search (requires search index to be loaded) + */ + query: (query) => { + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const titles = Search._index.titles; + const allTitles = Search._index.alltitles; + const indexEntries = Search._index.indexentries; + + // stem the search terms and add them to the correct list + const stemmer = new Stemmer(); + const searchTerms = new Set(); + const excludedTerms = new Set(); + const highlightTerms = new Set(); + const objectTerms = new Set(splitQuery(query.toLowerCase().trim())); + splitQuery(query.trim()).forEach((queryTerm) => { + const queryTermLower = queryTerm.toLowerCase(); + + // maybe skip this "word" + // stopwords array is from language_data.js + if ( + stopwords.indexOf(queryTermLower) !== -1 || + queryTerm.match(/^\d+$/) + ) + return; + + // stem the word + let word = stemmer.stemWord(queryTermLower); + // select the correct list + if (word[0] === "-") excludedTerms.add(word.substr(1)); + else { + searchTerms.add(word); + highlightTerms.add(queryTermLower); + } + }); + + if (SPHINX_HIGHLIGHT_ENABLED) { // set in sphinx_highlight.js + localStorage.setItem("sphinx_highlight_terms", [...highlightTerms].join(" ")) + } + + // console.debug("SEARCH: searching for:"); + // console.info("required: ", [...searchTerms]); + // console.info("excluded: ", [...excludedTerms]); + + // array of [docname, title, anchor, descr, score, filename] + let results = []; + _removeChildren(document.getElementById("search-progress")); + + const queryLower = query.toLowerCase(); + for (const [title, foundTitles] of Object.entries(allTitles)) { + if (title.toLowerCase().includes(queryLower) && (queryLower.length >= title.length/2)) { + for (const [file, id] of foundTitles) { + let score = Math.round(100 * queryLower.length / title.length) + results.push([ + docNames[file], + titles[file] !== title ? `${titles[file]} > ${title}` : title, + id !== null ? "#" + id : "", + null, + score, + filenames[file], + ]); + } + } + } + + // search for explicit entries in index directives + for (const [entry, foundEntries] of Object.entries(indexEntries)) { + if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) { + for (const [file, id] of foundEntries) { + let score = Math.round(100 * queryLower.length / entry.length) + results.push([ + docNames[file], + titles[file], + id ? "#" + id : "", + null, + score, + filenames[file], + ]); + } + } + } + + // lookup as object + objectTerms.forEach((term) => + results.push(...Search.performObjectSearch(term, objectTerms)) + ); + + // lookup as search terms in fulltext + results.push(...Search.performTermsSearch(searchTerms, excludedTerms)); + + // let the scorer override scores with a custom scoring function + if (Scorer.score) results.forEach((item) => (item[4] = Scorer.score(item))); + + // now sort the results by score (in opposite order of appearance, since the + // display function below uses pop() to retrieve items) and then + // alphabetically + results.sort((a, b) => { + const leftScore = a[4]; + const rightScore = b[4]; + if (leftScore === rightScore) { + // same score: sort alphabetically + const leftTitle = a[1].toLowerCase(); + const rightTitle = b[1].toLowerCase(); + if (leftTitle === rightTitle) return 0; + return leftTitle > rightTitle ? -1 : 1; // inverted is intentional + } + return leftScore > rightScore ? 1 : -1; + }); + + // remove duplicate search results + // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept + let seen = new Set(); + results = results.reverse().reduce((acc, result) => { + let resultStr = result.slice(0, 4).concat([result[5]]).map(v => String(v)).join(','); + if (!seen.has(resultStr)) { + acc.push(result); + seen.add(resultStr); + } + return acc; + }, []); + + results = results.reverse(); + + // for debugging + //Search.lastresults = results.slice(); // a copy + // console.info("search results:", Search.lastresults); + + // print the results + _displayNextItem(results, results.length, searchTerms, highlightTerms); + }, + + /** + * search for object names + */ + performObjectSearch: (object, objectTerms) => { + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const objects = Search._index.objects; + const objNames = Search._index.objnames; + const titles = Search._index.titles; + + const results = []; + + const objectSearchCallback = (prefix, match) => { + const name = match[4] + const fullname = (prefix ? prefix + "." : "") + name; + const fullnameLower = fullname.toLowerCase(); + if (fullnameLower.indexOf(object) < 0) return; + + let score = 0; + const parts = fullnameLower.split("."); + + // check for different match types: exact matches of full name or + // "last name" (i.e. last dotted part) + if (fullnameLower === object || parts.slice(-1)[0] === object) + score += Scorer.objNameMatch; + else if (parts.slice(-1)[0].indexOf(object) > -1) + score += Scorer.objPartialMatch; // matches in last name + + const objName = objNames[match[1]][2]; + const title = titles[match[0]]; + + // If more than one term searched for, we require other words to be + // found in the name/title/description + const otherTerms = new Set(objectTerms); + otherTerms.delete(object); + if (otherTerms.size > 0) { + const haystack = `${prefix} ${name} ${objName} ${title}`.toLowerCase(); + if ( + [...otherTerms].some((otherTerm) => haystack.indexOf(otherTerm) < 0) + ) + return; + } + + let anchor = match[3]; + if (anchor === "") anchor = fullname; + else if (anchor === "-") anchor = objNames[match[1]][1] + "-" + fullname; + + const descr = objName + _(", in ") + title; + + // add custom score for some objects according to scorer + if (Scorer.objPrio.hasOwnProperty(match[2])) + score += Scorer.objPrio[match[2]]; + else score += Scorer.objPrioDefault; + + results.push([ + docNames[match[0]], + fullname, + "#" + anchor, + descr, + score, + filenames[match[0]], + ]); + }; + Object.keys(objects).forEach((prefix) => + objects[prefix].forEach((array) => + objectSearchCallback(prefix, array) + ) + ); + return results; + }, + + /** + * search for full-text terms in the index + */ + performTermsSearch: (searchTerms, excludedTerms) => { + // prepare search + const terms = Search._index.terms; + const titleTerms = Search._index.titleterms; + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const titles = Search._index.titles; + + const scoreMap = new Map(); + const fileMap = new Map(); + + // perform the search on the required terms + searchTerms.forEach((word) => { + const files = []; + const arr = [ + { files: terms[word], score: Scorer.term }, + { files: titleTerms[word], score: Scorer.title }, + ]; + // add support for partial matches + if (word.length > 2) { + const escapedWord = _escapeRegExp(word); + Object.keys(terms).forEach((term) => { + if (term.match(escapedWord) && !terms[word]) + arr.push({ files: terms[term], score: Scorer.partialTerm }); + }); + Object.keys(titleTerms).forEach((term) => { + if (term.match(escapedWord) && !titleTerms[word]) + arr.push({ files: titleTerms[word], score: Scorer.partialTitle }); + }); + } + + // no match but word was a required one + if (arr.every((record) => record.files === undefined)) return; + + // found search word in contents + arr.forEach((record) => { + if (record.files === undefined) return; + + let recordFiles = record.files; + if (recordFiles.length === undefined) recordFiles = [recordFiles]; + files.push(...recordFiles); + + // set score for the word in each file + recordFiles.forEach((file) => { + if (!scoreMap.has(file)) scoreMap.set(file, {}); + scoreMap.get(file)[word] = record.score; + }); + }); + + // create the mapping + files.forEach((file) => { + if (fileMap.has(file) && fileMap.get(file).indexOf(word) === -1) + fileMap.get(file).push(word); + else fileMap.set(file, [word]); + }); + }); + + // now check if the files don't contain excluded terms + const results = []; + for (const [file, wordList] of fileMap) { + // check if all requirements are matched + + // as search terms with length < 3 are discarded + const filteredTermCount = [...searchTerms].filter( + (term) => term.length > 2 + ).length; + if ( + wordList.length !== searchTerms.size && + wordList.length !== filteredTermCount + ) + continue; + + // ensure that none of the excluded terms is in the search result + if ( + [...excludedTerms].some( + (term) => + terms[term] === file || + titleTerms[term] === file || + (terms[term] || []).includes(file) || + (titleTerms[term] || []).includes(file) + ) + ) + break; + + // select one (max) score for the file. + const score = Math.max(...wordList.map((w) => scoreMap.get(file)[w])); + // add result to the result list + results.push([ + docNames[file], + titles[file], + "", + null, + score, + filenames[file], + ]); + } + return results; + }, + + /** + * helper function to return a node containing the + * search summary for a given text. keywords is a list + * of stemmed words. + */ + makeSearchSummary: (htmlText, keywords) => { + const text = Search.htmlToText(htmlText); + if (text === "") return null; + + const textLower = text.toLowerCase(); + const actualStartPosition = [...keywords] + .map((k) => textLower.indexOf(k.toLowerCase())) + .filter((i) => i > -1) + .slice(-1)[0]; + const startWithContext = Math.max(actualStartPosition - 120, 0); + + const top = startWithContext === 0 ? "" : "..."; + const tail = startWithContext + 240 < text.length ? "..." : ""; + + let summary = document.createElement("p"); + summary.classList.add("context"); + summary.textContent = top + text.substr(startWithContext, 240).trim() + tail; + + return summary; + }, +}; + +_ready(Search.init); diff --git a/src/docs/_build/html/_static/sphinx_highlight.js b/src/docs/_build/html/_static/sphinx_highlight.js new file mode 100644 index 0000000..8a96c69 --- /dev/null +++ b/src/docs/_build/html/_static/sphinx_highlight.js @@ -0,0 +1,154 @@ +/* Highlighting utilities for Sphinx HTML documentation. */ +"use strict"; + +const SPHINX_HIGHLIGHT_ENABLED = true + +/** + * highlight a given string on a node by wrapping it in + * span elements with the given class name. + */ +const _highlight = (node, addItems, text, className) => { + if (node.nodeType === Node.TEXT_NODE) { + const val = node.nodeValue; + const parent = node.parentNode; + const pos = val.toLowerCase().indexOf(text); + if ( + pos >= 0 && + !parent.classList.contains(className) && + !parent.classList.contains("nohighlight") + ) { + let span; + + const closestNode = parent.closest("body, svg, foreignObject"); + const isInSVG = closestNode && closestNode.matches("svg"); + if (isInSVG) { + span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); + } else { + span = document.createElement("span"); + span.classList.add(className); + } + + span.appendChild(document.createTextNode(val.substr(pos, text.length))); + const rest = document.createTextNode(val.substr(pos + text.length)); + parent.insertBefore( + span, + parent.insertBefore( + rest, + node.nextSibling + ) + ); + node.nodeValue = val.substr(0, pos); + /* There may be more occurrences of search term in this node. So call this + * function recursively on the remaining fragment. + */ + _highlight(rest, addItems, text, className); + + if (isInSVG) { + const rect = document.createElementNS( + "http://www.w3.org/2000/svg", + "rect" + ); + const bbox = parent.getBBox(); + rect.x.baseVal.value = bbox.x; + rect.y.baseVal.value = bbox.y; + rect.width.baseVal.value = bbox.width; + rect.height.baseVal.value = bbox.height; + rect.setAttribute("class", className); + addItems.push({ parent: parent, target: rect }); + } + } + } else if (node.matches && !node.matches("button, select, textarea")) { + node.childNodes.forEach((el) => _highlight(el, addItems, text, className)); + } +}; +const _highlightText = (thisNode, text, className) => { + let addItems = []; + _highlight(thisNode, addItems, text, className); + addItems.forEach((obj) => + obj.parent.insertAdjacentElement("beforebegin", obj.target) + ); +}; + +/** + * Small JavaScript module for the documentation. + */ +const SphinxHighlight = { + + /** + * highlight the search words provided in localstorage in the text + */ + highlightSearchWords: () => { + if (!SPHINX_HIGHLIGHT_ENABLED) return; // bail if no highlight + + // get and clear terms from localstorage + const url = new URL(window.location); + const highlight = + localStorage.getItem("sphinx_highlight_terms") + || url.searchParams.get("highlight") + || ""; + localStorage.removeItem("sphinx_highlight_terms") + url.searchParams.delete("highlight"); + window.history.replaceState({}, "", url); + + // get individual terms from highlight string + const terms = highlight.toLowerCase().split(/\s+/).filter(x => x); + if (terms.length === 0) return; // nothing to do + + // There should never be more than one element matching "div.body" + const divBody = document.querySelectorAll("div.body"); + const body = divBody.length ? divBody[0] : document.querySelector("body"); + window.setTimeout(() => { + terms.forEach((term) => _highlightText(body, term, "highlighted")); + }, 10); + + const searchBox = document.getElementById("searchbox"); + if (searchBox === null) return; + searchBox.appendChild( + document + .createRange() + .createContextualFragment( + '" + ) + ); + }, + + /** + * helper function to hide the search marks again + */ + hideSearchWords: () => { + document + .querySelectorAll("#searchbox .highlight-link") + .forEach((el) => el.remove()); + document + .querySelectorAll("span.highlighted") + .forEach((el) => el.classList.remove("highlighted")); + localStorage.removeItem("sphinx_highlight_terms") + }, + + initEscapeListener: () => { + // only install a listener if it is really needed + if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) return; + + document.addEventListener("keydown", (event) => { + // bail for input elements + if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName)) return; + // bail with special keys + if (event.shiftKey || event.altKey || event.ctrlKey || event.metaKey) return; + if (DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS && (event.key === "Escape")) { + SphinxHighlight.hideSearchWords(); + event.preventDefault(); + } + }); + }, +}; + +_ready(() => { + /* Do not call highlightSearchWords() when we are on the search page. + * It will highlight words from the *previous* search query. + */ + if (typeof Search === "undefined") SphinxHighlight.highlightSearchWords(); + SphinxHighlight.initEscapeListener(); +}); diff --git a/src/docs/_build/html/genindex.html b/src/docs/_build/html/genindex.html new file mode 100644 index 0000000..401fb2c --- /dev/null +++ b/src/docs/_build/html/genindex.html @@ -0,0 +1,818 @@ + + + + + + Index — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ + +

Index

+ +
+ A + | B + | C + | D + | E + | F + | G + | H + | I + | L + | M + | N + | O + | P + | Q + | R + | S + | T + | V + +
+

A

+ + + +
+ +

B

+ + + +
+ +

C

+ + + +
+ +

D

+ + + +
+ +

E

+ + + +
+ +

F

+ + + +
+ +

G

+ + + +
    +
  • + grag.components.text_splitter + +
  • +
  • + grag.components.utils + +
  • +
  • + grag.components.vectordb + +
  • +
  • + grag.components.vectordb.base + +
  • +
  • + grag.components.vectordb.chroma_client + +
  • +
  • + grag.components.vectordb.deeplake_client + +
  • +
  • + grag.prompts + +
  • +
  • + grag.quantize + +
  • +
  • + grag.quantize.quantize + +
  • +
  • + grag.quantize.utils + +
  • +
  • + grag.rag + +
  • +
  • + grag.rag.basic_rag + +
  • +
+ +

H

+ + + +
+ +

I

+ + + +
+ +

L

+ + + +
+ +

M

+ + +
+ +

N

+ + + +
+ +

O

+ + + +
+ +

P

+ + + +
+ +

Q

+ + +
+ +

R

+ + + +
+ +

S

+ + + +
+ +

T

+ + + +
+ +

V

+ + + +
+ + + +
+
+
+ +
+ +
+

© Copyright 2024, Arjun Bingly, Sanchit Vijay, Erica Pham, Kunal Inglunkar.

+
+ + Built with Sphinx using a + theme + provided by Read the Docs. + + +
+
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/grag.components.html b/src/docs/_build/html/grag.components.html new file mode 100644 index 0000000..f2af80f --- /dev/null +++ b/src/docs/_build/html/grag.components.html @@ -0,0 +1,1394 @@ + + + + + + + grag.components package — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

grag.components package

+
+

Subpackages

+ +
+
+

Submodules

+
+
+

grag.components.embedding module

+

Class for embedding.

+

This module provides: +- Embedding

+
+
+class grag.components.embedding.Embedding(embedding_type: str, embedding_model: str)[source]
+

Bases: object

+

A class for vector embeddings.

+
+
Supports:

huggingface sentence transformers -> model_type = ‘sentence-transformers’ +huggingface instructor embeddings -> model_type = ‘instructor-embedding’

+
+
+
+
+embedding_type[source]
+

embedding model type, refer above for supported types

+
+ +
+
+embedding_model[source]
+

huggingface model name

+
+ +
+
+embedding_function[source]
+

langchain embedding type

+
+ +
+ +
+
+

grag.components.llm module

+

Class for LLM.

+
+
+class grag.components.llm.LLM(model_name='Llama-2-13b-chat', device_map='auto', task='text-generation', max_new_tokens='1024', temperature='0.1', n_batch='1024', n_ctx='6000', n_gpu_layers='-1', std_out='True', base_dir='/home/ubuntu/volume_2k/Capstone_5/models', quantization='Q5_K_M', pipeline='llama_cpp')[source]
+

Bases: object

+

A class for managing and utilizing large language models (LLMs).

+
+
+model_name[source]
+

Name of the model to be loaded.

+
+
Type:
+

str

+
+
+
+ +
+
+device_map[source]
+

Device mapping for model execution.

+
+
Type:
+

dict

+
+
+
+ +
+
+task[source]
+

The task for which the model is being used.

+
+
Type:
+

str

+
+
+
+ +
+
+max_new_tokens[source]
+

Maximum new tokens to be generated.

+
+
Type:
+

int

+
+
+
+ +
+
+temperature[source]
+

Sampling temperature for generation.

+
+
Type:
+

float

+
+
+
+ +
+
+n_batch[source]
+

Number of batches for GPU CPP.

+
+
Type:
+

int

+
+
+
+ +
+
+n_ctx[source]
+

Context size for CPP.

+
+
Type:
+

int

+
+
+
+ +
+
+n_gpu_layers[source]
+

Number of GPU layers for CPP.

+
+
Type:
+

int

+
+
+
+ +
+
+hf_pipeline(is_local=False)[source]
+

Loads the model using Hugging Face transformers.

+
+
Parameters:
+

is_local (bool) – Whether to load the model from a local path.

+
+
+
+ +
+
+llama_cpp()[source]
+

Loads the model using a custom CPP pipeline.

+
+ +
+
+load_model(model_name=None, pipeline=None, quantization=None, is_local=None)[source]
+

Loads the model based on the specified pipeline and model name.

+
+
Parameters:
+
    +
  • quantization (str) – Quantization of the LLM model like Q5_K_M, f16, etc. Optional.

  • +
  • model_name (str) – The name of the model to load. Optional.

  • +
  • pipeline (str) – The pipeline to use for loading the model. Defaults to ‘llama_cpp’.

  • +
  • is_local (bool) – Whether the model is loaded from a local directory. Defaults to True.

  • +
+
+
+
+ +
+
+property model_name[source]
+

Returns the name of the model.

+
+ +
+
+property model_path[source]
+

Sets the model name.

+
+ +
+ +
+
+

grag.components.multivec_retriever module

+

Class for retriever.

+

This module provides: +- Retriever

+
+
+class grag.components.multivec_retriever.Retriever(vectordb: VectorDB | None = None, store_path: str = '/home/ubuntu/volume_2k/Capstone_5/data/docs', id_key: str = 'doc_id', namespace: str = '8c9040b0b5cd4d7cbc2e737da1b24ebf', top_k=3, client_kwargs: Dict[str, Any] | None = None)[source]
+

Bases: object

+

A class for multi vector retriever.

+

It connects to a vector database and a local file store. +It is used to return most similar chunks from a vector store but has the additional functionality to return a +linked document, chunk, etc.

+
+
+store_path[source]
+

Path to the local file store

+
+ +
+
+id_key[source]
+

A key prefix for identifying documents

+
+ +
+
+vectordb[source]
+

ChromaClient class instance from components.client

+
+ +
+
+store[source]
+

langchain.storage.LocalFileStore object, stores the key value pairs of document id and parent file

+
+ +
+
+retriever[source]
+

langchain.retrievers.multi_vector.MultiVectorRetriever class instance, +langchain’s multi-vector retriever

+
+ +
+
+splitter[source]
+

TextSplitter class instance from components.text_splitter

+
+ +
+
+namespace[source]
+

Namespace for producing unique id

+
+ +
+
+top_k[source]
+

Number of top chunks to return from similarity search.

+
+ +
+
+async aadd_docs(docs: List[Document])[source]
+

Adds given documents into the vector database also adds the parent document into the file store.

+
+
Parameters:
+

docs – List of langchain_core.documents.Document

+
+
Returns:
+

None

+
+
+
+ +
+
+add_docs(docs: List[Document])[source]
+

Adds given documents into the vector database also adds the parent document into the file store.

+
+
Parameters:
+

docs – List of langchain_core.documents.Document

+
+
Returns:
+

None

+
+
+
+ +
+
+async aget_chunk(query: str, with_score=False, top_k=None)[source]
+

Returns the most (cosine) similar chunks from the vector database, asynchronously.

+
+
Parameters:
+
    +
  • query – A query string

  • +
  • with_score – Outputs scores of returned chunks

  • +
  • top_k – Number of top similar chunks to return, if None defaults to self.top_k

  • +
+
+
Returns:
+

list of Documents

+
+
+
+ +
+
+async aget_doc(query: str)[source]
+

Returns the parent documents of the most (cosine) similar chunks from the vector database.

+
+
Parameters:
+

query – A query string

+
+
Returns:
+

Documents

+
+
+
+ +
+
+async aingest(dir_path: str | Path, glob_pattern: str = '**/*.pdf', dry_run: bool = False, verbose: bool = True, parser_kwargs: dict = None)[source]
+

Asynchronously ingests the files in directory.

+
+
Parameters:
+
    +
  • dir_path – path to the directory

  • +
  • glob_pattern – glob pattern to identify files

  • +
  • dry_run – if True, does not ingest any files

  • +
  • verbose – if True, shows progress

  • +
  • parser_kwargs – arguments to pass to the parser

  • +
+
+
+
+ +
+
+gen_doc_ids(docs: List[Document]) List[str][source]
+

Takes a list of documents and produces a list of unique id, refer id_gen method for more details.

+
+
Parameters:
+

docs – List of langchain_core.documents.Document

+
+
Returns:
+

List of hexadecimal uuid

+
+
+
+ +
+
+get_chunk(query: str, with_score=False, top_k=None)[source]
+

Returns the most similar chunks from the vector database.

+
+
Parameters:
+
    +
  • query – A query string

  • +
  • with_score – Outputs scores of returned chunks

  • +
  • top_k – Number of top similar chunks to return, if None defaults to self.top_k

  • +
+
+
Returns:
+

list of Documents

+
+
+
+ +
+
+get_doc(query: str)[source]
+

Returns the parent document of the most (cosine) similar chunk from the vector database.

+
+
Parameters:
+

query – A query string

+
+
Returns:
+

Documents

+
+
+
+ +
+
+get_docs_from_chunks(chunks: List[Document], one_to_one=False)[source]
+

Returns the parent documents of chunks.

+
+
Parameters:
+
    +
  • chunks – chunks from vector store

  • +
  • one_to_one – if True, returns parent doc for each chunk

  • +
+
+
Returns:
+

parent documents

+
+
+
+ +
+
+id_gen(doc: Document) str[source]
+

Takes a document and returns a unique id (uuid5) using the namespace and document source.

+

This ensures that a single document always gets the same unique id.

+
+
Parameters:
+

doc – langchain_core.documents.Document

+
+
Returns:
+

string of hexadecimal uuid

+
+
+
+ +
+
+ingest(dir_path: str | Path, glob_pattern: str = '**/*.pdf', dry_run: bool = False, verbose: bool = True, parser_kwargs: dict = None)[source]
+

Ingests the files in directory.

+
+
Parameters:
+
    +
  • dir_path – path to the directory

  • +
  • glob_pattern – glob pattern to identify files

  • +
  • dry_run – if True, does not ingest any files

  • +
  • verbose – if True, shows progress

  • +
  • parser_kwargs – arguments to pass to the parser

  • +
+
+
+
+ +
+
+split_docs(docs: List[Document]) List[Document][source]
+

Takes a list of documents and splits them into smaller chunks.

+

Using TextSplitter from components.text_splitter +Also adds the unique parent document id into metadata

+
+
Parameters:
+

docs – List of langchain_core.documents.Document

+
+
Returns:
+

list of chunks after splitting

+
+
+
+ +
+ +
+
+

grag.components.parse_pdf module

+

Classes for parsing files.

+

This module provides: +- ParsePDF

+
+
+class grag.components.parse_pdf.ParsePDF(single_text_out='True', strategy='hi_res', infer_table_structure='True', extract_images='True', image_output_dir='None', add_captions_to_text='True', add_captions_to_blocks='True', table_as_html='True')[source]
+

Bases: object

+

Parsing and partitioning PDF documents into Text, Table or Image elements.

+
+
+single_text_out[source]
+

Whether to combine all text elements into a single output document.

+
+
Type:
+

bool

+
+
+
+ +
+
+strategy[source]
+

The strategy for PDF partitioning; default is “hi_res” for better accuracy.

+
+
Type:
+

str

+
+
+
+ +
+
+extract_image_block_types[source]
+

Elements to be extracted as image blocks.

+
+
Type:
+

list

+
+
+
+ +
+
+infer_table_structure[source]
+

Whether to extract tables during partitioning.

+
+
Type:
+

bool

+
+
+
+ +
+
+extract_images[source]
+

Whether to extract images.

+
+
Type:
+

bool

+
+
+
+ +
+
+image_output_dir[source]
+

Directory to save extracted images, if any.

+
+
Type:
+

str

+
+
+
+ +
+
+add_captions_to_text[source]
+

Whether to include figure captions in text output. Default is True.

+
+
Type:
+

bool

+
+
+
+ +
+
+add_captions_to_blocks[source]
+

Whether to add captions to table and image blocks. Default is True.

+
+
Type:
+

bool

+
+
+
+ +
+
+add_caption_first[source]
+

Whether to place captions before their corresponding image or table in the output. Default is True.

+
+
Type:
+

bool

+
+
+
+ +
+
+classify(partitions)[source]
+

Classifies the partitioned elements into Text, Tables, and Images list in a dictionary.

+

Also adds captions for each element (if available).

+
+
Parameters:
+

partitions (list) – The list of partitioned elements from the PDF document.

+
+
Returns:
+

A dictionary with keys ‘Text’, ‘Tables’, and ‘Images’, each containing a list of corresponding elements.

+
+
Return type:
+

dict

+
+
+
+ +
+
+load_file(path)[source]
+

Loads a PDF file, partitions and classifies its elements, and processes these elements into Documents.

+
+
Parameters:
+

path (str) – The file path of the PDF document to be loaded and processed.

+
+
Returns:
+

A dictionary with keys ‘Text’, ‘Tables’, and ‘Images’, each containing a list of processed Document instances.

+
+
Return type:
+

dict

+
+
+
+ +
+
+partition(path: str)[source]
+

Partitions a PDF document into elements based on the instance’s configuration.

+
+
Parameters:
+

path (str) – The file path of the PDF document to be parsed and partitioned.

+
+
Returns:
+

A list of partitioned elements from the PDF document.

+
+
Return type:
+

list

+
+
+
+ +
+
+process_images(elements)[source]
+

Processes image elements into Documents, including handling of captions if specified.

+
+
Parameters:
+

elements (list) – The list of image elements (and optional captions) to be processed.

+
+
Returns:
+

A list of Document instances containing the Images, their caption and metadata.

+
+
Return type:
+

docs (list)

+
+
+
+ +
+
+process_tables(elements)[source]
+

Processes table elements into Documents, including handling of captions if specified.

+
+
Parameters:
+

elements (list) – The list of table elements (and optional captions) to be processed.

+
+
Returns:
+

A list of Document instances containing Tables, their captions and metadata.

+
+
Return type:
+

docs (list)

+
+
+
+ +
+
+process_text(elements)[source]
+

Processes text elements into langchain Documents.

+
+
Parameters:
+

elements (list) – The list of text elements to be processed.

+
+
Returns:
+

A list of Document instances containing the extracted Text content and their metadata.

+
+
Return type:
+

docs (list)

+
+
+
+ +
+
+text_concat(elements) str[source]
+

Context aware concatenates all elements into a single string.

+
+ +
+ +
+
+

grag.components.prompt module

+

Classes for prompts.

+

This module provides: +- Prompt - for generic prompts +- FewShotPrompt - for few-shot prompts

+
+
+class grag.components.prompt.FewShotPrompt(*, name: str = 'custom_prompt', llm_type: str = 'None', task: str = 'QA', source: str = 'NoSource', doc_chain: str = 'stuff', language: str = 'en', filepath: str | None = None, input_keys: List[str], template: str, prompt: FewShotPromptTemplate | None = None, output_keys: List[str], examples: List[Dict[str, Any]], prefix: str, suffix: str, example_template: str)[source]
+

Bases: Prompt

+

A class for generic prompts.

+
+
+name[source]
+

The prompt name (Optional, defaults to “custom_prompt”) (Parent Class)

+
+
Type:
+

str

+
+
+
+ +
+
+llm_type[source]
+

The type of llm, llama2, etc (Optional, defaults to “None”) (Parent Class)

+
+
Type:
+

str

+
+
+
+ +
+
+task[source]
+

The task (Optional, defaults to QA) (Parent Class)

+
+
Type:
+

str

+
+
+
+ +
+
+source[source]
+

The source of the prompt (Optional, defaults to “NoSource”) (Parent Class)

+
+
Type:
+

str

+
+
+
+ +
+
+doc_chain[source]
+

The doc chain for the prompt (“stuff”, “refine”) (Optional, defaults to “stuff”) (Parent Class)

+
+
Type:
+

str

+
+
+
+ +
+
+language[source]
+

The language of the prompt (Optional, defaults to “en”) (Parent Class)

+
+
Type:
+

str

+
+
+
+ +
+
+filepath[source]
+

The filepath of the prompt (Optional) (Parent Class)

+
+
Type:
+

str

+
+
+
+ +
+
+input_keys[source]
+

The input keys for the prompt (Parent Class)

+
+
Type:
+

List[str]

+
+
+
+ +
+
+input_keys[source]
+

The output keys for the prompt

+
+
Type:
+

List[str]

+
+
+
+ +
+
+prefix[source]
+

The template prefix for the prompt

+
+
Type:
+

str

+
+
+
+ +
+
+suffix[source]
+

The template suffix for the prompt

+
+
Type:
+

str

+
+
+
+ +
+
+example_template[source]
+

The template for formatting the examples

+
+
Type:
+

str

+
+
+
+ +
+
+examples[source]
+

The list of examples, each example is a dictionary with respective keys

+
+
Type:
+

List[Dict[str, Any]]

+
+
+
+ +
+
+example_template: str[source]
+
+ +
+
+examples: List[Dict[str, Any]][source]
+
+ +
+
+model_config: ClassVar[ConfigDict] = {}[source]
+

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

+
+ +
+
+model_fields: ClassVar[dict[str, FieldInfo]] = {'doc_chain': FieldInfo(annotation=str, required=False, default='stuff'), 'example_template': FieldInfo(annotation=str, required=True), 'examples': FieldInfo(annotation=List[Dict[str, Any]], required=True), 'filepath': FieldInfo(annotation=Union[str, NoneType], required=False, exclude=True), 'input_keys': FieldInfo(annotation=List[str], required=True), 'language': FieldInfo(annotation=str, required=False, default='en'), 'llm_type': FieldInfo(annotation=str, required=False, default='None'), 'name': FieldInfo(annotation=str, required=False, default='custom_prompt'), 'output_keys': FieldInfo(annotation=List[str], required=True), 'prefix': FieldInfo(annotation=str, required=True), 'prompt': FieldInfo(annotation=Union[FewShotPromptTemplate, NoneType], required=False, exclude=True, repr=False), 'source': FieldInfo(annotation=str, required=False, default='NoSource'), 'suffix': FieldInfo(annotation=str, required=True), 'task': FieldInfo(annotation=str, required=False, default='QA'), 'template': FieldInfo(annotation=str, required=True)}[source]
+

Metadata about the fields defined on the model, +mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

+

This replaces Model.__fields__ from Pydantic V1.

+
+ +
+
+output_keys: List[str][source]
+
+ +
+
+prefix: str[source]
+
+ +
+
+prompt: FewShotPromptTemplate | None[source]
+
+ +
+
+suffix: str[source]
+
+ +
+
+classmethod validate_examples(v) List[Dict[str, Any]][source]
+

Validate the examples field.

+
+ +
+
+classmethod validate_output_keys(v) List[str][source]
+

Validate the output_keys field.

+
+ +
+ +
+
+class grag.components.prompt.Prompt(*, name: str = 'custom_prompt', llm_type: str = 'None', task: str = 'QA', source: str = 'NoSource', doc_chain: str = 'stuff', language: str = 'en', filepath: str | None = None, input_keys: List[str], template: str, prompt: PromptTemplate | None = None)[source]
+

Bases: BaseModel

+

A class for generic prompts.

+
+
+name[source]
+

The prompt name (Optional, defaults to “custom_prompt”)

+
+
Type:
+

str

+
+
+
+ +
+
+llm_type[source]
+

The type of llm, llama2, etc (Optional, defaults to “None”)

+
+
Type:
+

str

+
+
+
+ +
+
+task[source]
+

The task (Optional, defaults to QA)

+
+
Type:
+

str

+
+
+
+ +
+
+source[source]
+

The source of the prompt (Optional, defaults to “NoSource”)

+
+
Type:
+

str

+
+
+
+ +
+
+doc_chain[source]
+

The doc chain for the prompt (“stuff”, “refine”) (Optional, defaults to “stuff”)

+
+
Type:
+

str

+
+
+
+ +
+
+language[source]
+

The language of the prompt (Optional, defaults to “en”)

+
+
Type:
+

str

+
+
+
+ +
+
+filepath[source]
+

The filepath of the prompt (Optional)

+
+
Type:
+

str

+
+
+
+ +
+
+input_keys[source]
+

The input keys for the prompt

+
+
Type:
+

List[str]

+
+
+
+ +

template (str): The template for the prompt

+
+
+doc_chain: str[source]
+
+ +
+
+filepath: str | None[source]
+
+ +
+
+format(**kwargs) str[source]
+

Formats the prompt with provided keys and returns a string.

+
+ +
+
+input_keys: List[str][source]
+
+ +
+
+language: str[source]
+
+ +
+
+llm_type: str[source]
+
+ +
+
+classmethod load(filepath: Path | str)[source]
+

Loads a json file and returns a Prompt class.

+
+ +
+
+model_config: ClassVar[ConfigDict] = {}[source]
+

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

+
+ +
+
+model_fields: ClassVar[dict[str, FieldInfo]] = {'doc_chain': FieldInfo(annotation=str, required=False, default='stuff'), 'filepath': FieldInfo(annotation=Union[str, NoneType], required=False, exclude=True), 'input_keys': FieldInfo(annotation=List[str], required=True), 'language': FieldInfo(annotation=str, required=False, default='en'), 'llm_type': FieldInfo(annotation=str, required=False, default='None'), 'name': FieldInfo(annotation=str, required=False, default='custom_prompt'), 'prompt': FieldInfo(annotation=Union[PromptTemplate, NoneType], required=False, exclude=True, repr=False), 'source': FieldInfo(annotation=str, required=False, default='NoSource'), 'task': FieldInfo(annotation=str, required=False, default='QA'), 'template': FieldInfo(annotation=str, required=True)}[source]
+

Metadata about the fields defined on the model, +mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

+

This replaces Model.__fields__ from Pydantic V1.

+
+ +
+
+name: str[source]
+
+ +
+
+prompt: PromptTemplate | None[source]
+
+ +
+
+save(filepath: Path | str | None, overwrite=False) None | ValueError[source]
+

Saves the prompt class into a json file.

+
+ +
+
+source: str[source]
+
+ +
+
+task: str[source]
+
+ +
+
+template: str[source]
+
+ +
+
+classmethod validate_doc_chain(v: str) str[source]
+

Validate the doc_chain field.

+
+ +
+
+classmethod validate_input_keys(v) List[str][source]
+

Validate the input_keys field.

+
+ +
+
+classmethod validate_task(v: str) str[source]
+

Validate the task field.

+
+ +
+ +
+
+

grag.components.text_splitter module

+

Class for splitting/chunking text.

+

This module provides: +- TextSplitter

+
+
+class grag.components.text_splitter.TextSplitter(chunk_size: int = '5000', chunk_overlap: int = '400')[source]
+

Bases: object

+

Class for recursively chunking text, it prioritizes ‘/n/n then ‘/n’ and so on.

+
+
+chunk_size[source]
+

maximum size of chunk

+
+ +
+
+chunk_overlap[source]
+

chunk overlap size

+
+ +
+
+text_splitter[source]
+

Initialize TextSplitter using chunk_size and chunk_overlap

+
+ +
+ +
+
+

grag.components.utils module

+

Utils functions.

+

This module provides: +- stuff_docs: concats langchain documents into string +- load_prompt: loads json prompt to langchain prompt +- find_config_path: finds the path of the ‘config.ini’ file by traversing up the directory tree from the current path. +- get_config: retrieves and parses the configuration settings from the ‘config.ini’ file.

+
+
+grag.components.utils.display_llm_output_and_sources(response_from_llm)[source]
+

Displays the result from an LLM response and lists the sources.

+

Args: +response_from_llm (dict): The response object from an LLM which includes the result and source documents.

+
+ +
+
+grag.components.utils.find_config_path(current_path: Path) Path[source]
+

Finds the path of the ‘config.ini’ file by traversing up the directory tree from the current path.

+

This function starts at the current path and moves up the directory tree until it finds a file named ‘config.ini’. +If ‘config.ini’ is not found by the time the root of the directory tree is reached, a FileNotFoundError is raised.

+
+
Parameters:
+

current_path (Path) – The starting point for the search, typically the location of the script being executed.

+
+
Returns:
+

The path to the found ‘config.ini’ file.

+
+
Return type:
+

Path

+
+
Raises:
+

FileNotFoundError – If ‘config.ini’ cannot be found in any of the parent directories.

+
+
+
+ +
+
+grag.components.utils.get_config() ConfigParser[source]
+

Retrieves and parses the configuration settings from the ‘config.ini’ file.

+

This function locates the ‘config.ini’ file by calling find_config_path using the script’s current location. +It initializes a ConfigParser object to read the configuration settings from the located ‘config.ini’ file.

+
+
Returns:
+

A parser object containing the configuration settings from ‘config.ini’.

+
+
Return type:
+

ConfigParser

+
+
+
+ +
+
+grag.components.utils.load_prompt(json_file: str | PathLike, return_input_vars=False)[source]
+

Loads a prompt template from json file and returns a langchain ChatPromptTemplate.

+
+
Parameters:
+
    +
  • json_file – path to the prompt template json file.

  • +
  • return_input_vars – if true returns a list of expected input variables for the prompt.

  • +
+
+
Returns:
+

langchain_core.prompts.ChatPromptTemplate (and a list of input vars if return_input_vars is True)

+
+
+
+ +
+
+grag.components.utils.reformat_text_with_line_breaks(input_text, max_width=110)[source]
+

Reformat the given text to ensure each line does not exceed a specific width, preserving existing line breaks.

+

Args: +input_text (str): The text to be reformatted. +max_width (int): The maximum width of each line.

+

Returns: +str: The reformatted text with preserved line breaks and adjusted line width.

+
+ +
+
+grag.components.utils.stuff_docs(docs: List[Document]) str[source]
+

Concatenates langchain documents into a string using ‘nn’ seperator.

+
+
Parameters:
+

docs – List of langchain_core.documents.Document

+
+
Returns:
+

string of document page content joined by ‘nn’

+
+
+
+ +
+
+

Module contents

+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/grag.components.vectordb.html b/src/docs/_build/html/grag.components.vectordb.html new file mode 100644 index 0000000..3070a19 --- /dev/null +++ b/src/docs/_build/html/grag.components.vectordb.html @@ -0,0 +1,531 @@ + + + + + + + grag.components.vectordb package — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

grag.components.vectordb package

+
+

Submodules

+
+
+

grag.components.vectordb.base module

+

Abstract base class for vector database clients.

+

This module provides: +- VectorDB

+
+
+class grag.components.vectordb.base.VectorDB[source]
+

Bases: ABC

+

Abstract base class for vector database clients.

+
+
+abstract async aadd_docs(docs: List[Document], verbose: bool = True) None[source]
+

Adds documents to the vector database (asynchronous).

+
+
Parameters:
+
    +
  • docs – List of Documents

  • +
  • verbose – Show progress bar

  • +
+
+
Returns:
+

None

+
+
+
+ +
+
+abstract add_docs(docs: List[Document], verbose: bool = True) None[source]
+

Adds documents to the vector database.

+
+
Parameters:
+
    +
  • docs – List of Documents

  • +
  • verbose – Show progress bar

  • +
+
+
Returns:
+

None

+
+
+
+ +
+
+abstract async aget_chunk(query: str, with_score: bool = False, top_k: int = None) List[Document] | List[Tuple[Document, float]][source]
+

Returns the most similar chunks from the vector database (asynchronous).

+
+
Parameters:
+
    +
  • query – A query string

  • +
  • with_score – Outputs scores of returned chunks

  • +
  • top_k – Number of top similar chunks to return, if None defaults to self.top_k

  • +
+
+
Returns:
+

list of Documents

+
+
+
+ +
+
+abstract delete() None[source]
+

Delete all chunks in the vector database.

+
+ +
+
+abstract get_chunk(query: str, with_score: bool = False, top_k: int = None) List[Document] | List[Tuple[Document, float]][source]
+

Returns the most similar chunks from the vector database.

+
+
Parameters:
+
    +
  • query – A query string

  • +
  • with_score – Outputs scores of returned chunks

  • +
  • top_k – Number of top similar chunks to return, if None defaults to self.top_k

  • +
+
+
Returns:
+

list of Documents

+
+
+
+ +
+ +
+
+

grag.components.vectordb.chroma_client module

+

Class for Chroma vector database.

+

This module provides: +- ChromaClient

+
+
+class grag.components.vectordb.chroma_client.ChromaClient(host='localhost', port='8000', collection_name='arxiv', embedding_type='instructor-embedding', embedding_model='hkunlp/instructor-xl')[source]
+

Bases: VectorDB

+

A class for connecting to a hosted Chroma Vectorstore collection.

+
+
+host[source]
+

str +IP Address of hosted Chroma Vectorstore

+
+ +
+
+port[source]
+

str +port address of hosted Chroma Vectorstore

+
+ +
+
+collection_name[source]
+

str +name of the collection in the Chroma Vectorstore, each ChromaClient connects to a single collection

+
+ +
+
+embedding_type[source]
+

str +type of embedding used, supported ‘sentence-transformers’ and ‘instructor-embedding’

+
+ +
+
+embedding_model[source]
+

str +model name of embedding used, should correspond to the embedding_type

+
+ +
+
+embedding_function[source]
+

a function of the embedding model, derived from the embedding_type and embedding_modelname

+
+ +
+
+client[source]
+

chromadb.HttpClient +Chroma API for client

+
+ +
+
+collection[source]
+

Chroma API for the collection

+
+ +
+
+langchain_client[source]
+

langchain_community.vectorstores.Chroma +LangChain wrapper for Chroma collection

+
+ +
+
+async aadd_docs(docs: List[Document], verbose=True) None[source]
+

Asynchronously adds documents to chroma vectorstore.

+
+
Parameters:
+
    +
  • docs – List of Documents

  • +
  • verbose – Show progress bar

  • +
+
+
Returns:
+

None

+
+
+
+ +
+
+add_docs(docs: List[Document], verbose=True) None[source]
+

Adds documents to chroma vectorstore.

+
+
Parameters:
+
    +
  • docs – List of Documents

  • +
  • verbose – Show progress bar

  • +
+
+
Returns:
+

None

+
+
+
+ +
+
+async aget_chunk(query: str, with_score=False, top_k=None) List[Document] | List[Tuple[Document, float]][source]
+

Returns the most (cosine) similar chunks from the vector database, asynchronously.

+
+
Parameters:
+
    +
  • query – A query string

  • +
  • with_score – Outputs scores of returned chunks

  • +
  • top_k – Number of top similar chunks to return, if None defaults to self.top_k

  • +
+
+
Returns:
+

list of Documents

+
+
+
+ +
+
+delete() None[source]
+

Delete all the chunks in the database collection.

+
+ +
+
+get_chunk(query: str, with_score: bool = False, top_k: int = None) List[Document] | List[Tuple[Document, float]][source]
+

Returns the most similar chunks from the chroma database.

+
+
Parameters:
+
    +
  • query – A query string

  • +
  • with_score – Outputs scores of returned chunks

  • +
  • top_k – Number of top similar chunks to return, if None defaults to self.top_k

  • +
+
+
Returns:
+

list of Documents

+
+
+
+ +
+
+test_connection(verbose=True) int[source]
+

Tests connection with Chroma Vectorstore.

+
+
Parameters:
+

verbose – if True, prints connection status

+
+
Returns:
+

A random integer if connection is alive else None

+
+
+
+ +
+ +
+
+

grag.components.vectordb.deeplake_client module

+

Class for DeepLake vector database.

+

This module provides: +- DeepLakeClient

+
+
+class grag.components.vectordb.deeplake_client.DeepLakeClient(collection_name: str = 'arxiv', store_path: str | Path = '/home/ubuntu/volume_2k/Capstone_5/data/vectordb', embedding_type: str = 'instructor-embedding', embedding_model: str = 'hkunlp/instructor-xl', read_only: bool = False)[source]
+

Bases: VectorDB

+

A class for connecting to a DeepLake Vectorstore.

+
+
+store_path[source]
+

str, Path +The path to store the DeepLake vectorstore.

+
+ +
+
+embedding_type[source]
+

str +type of embedding used, supported ‘sentence-transformers’ and ‘instructor-embedding’

+
+ +
+
+embedding_model[source]
+

str +model name of embedding used, should correspond to the embedding_type

+
+ +
+
+embedding_function[source]
+

a function of the embedding model, derived from the embedding_type and embedding_modelname

+
+ +
+
+client[source]
+

deeplake.core.vectorstore.VectorStore +DeepLake API

+
+ +
+
+collection[source]
+

Chroma API for the collection

+
+ +
+
+langchain_client[source]
+

langchain_community.vectorstores.DeepLake +LangChain wrapper for DeepLake API

+
+ +
+
+async aadd_docs(docs: List[Document], verbose=True) None[source]
+

Asynchronously adds documents to chroma vectorstore.

+
+
Parameters:
+
    +
  • docs – List of Documents

  • +
  • verbose – Show progress bar

  • +
+
+
Returns:
+

None

+
+
+
+ +
+
+add_docs(docs: List[Document], verbose=True) None[source]
+

Adds documents to deeplake vectorstore.

+
+
Parameters:
+
    +
  • docs – List of Documents

  • +
  • verbose – Show progress bar

  • +
+
+
Returns:
+

None

+
+
+
+ +
+
+async aget_chunk(query: str, with_score=False, top_k=None) List[Document] | List[Tuple[Document, float]][source]
+

Returns the most similar chunks from the deeplake database, asynchronously.

+
+
Parameters:
+
    +
  • query – A query string

  • +
  • with_score – Outputs scores of returned chunks

  • +
  • top_k – Number of top similar chunks to return, if None defaults to self.top_k

  • +
+
+
Returns:
+

list of Documents

+
+
+
+ +
+
+delete() None[source]
+

Delete all chunks in the vector database.

+
+ +
+
+get_chunk(query: str, with_score: bool = False, top_k: int = None) List[Document] | List[Tuple[Document, float]][source]
+

Returns the most similar chunks from the deeplake database.

+
+
Parameters:
+
    +
  • query – A query string

  • +
  • with_score – Outputs scores of returned chunks

  • +
  • top_k – Number of top similar chunks to return, if None defaults to self.top_k

  • +
+
+
Returns:
+

list of Documents

+
+
+
+ +
+ +
+
+

Module contents

+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/grag.html b/src/docs/_build/html/grag.html new file mode 100644 index 0000000..cb6b186 --- /dev/null +++ b/src/docs/_build/html/grag.html @@ -0,0 +1,342 @@ + + + + + + + grag package — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

grag package

+
+

Subpackages

+
+ +
+
+
+

Module contents

+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/grag.prompts.html b/src/docs/_build/html/grag.prompts.html new file mode 100644 index 0000000..b711178 --- /dev/null +++ b/src/docs/_build/html/grag.prompts.html @@ -0,0 +1,130 @@ + + + + + + + grag.prompts package — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

grag.prompts package

+
+

Module contents

+

Contains all the provided prompts for different LLMs.

+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/grag.quantize.html b/src/docs/_build/html/grag.quantize.html new file mode 100644 index 0000000..3e1e72c --- /dev/null +++ b/src/docs/_build/html/grag.quantize.html @@ -0,0 +1,198 @@ + + + + + + + grag.quantize package — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

grag.quantize package

+
+

Submodules

+
+
+

grag.quantize.quantize module

+

Interactive file for quantizing models.

+
+
+

grag.quantize.utils module

+

Utility functions for quantization.

+
+
+grag.quantize.utils.building_llamacpp(root_path: str | Path) None[source]
+

Attempts to build the llama.cpp project using make or cmake.

+
+
Parameters:
+

root_path (str) – The root directory where the llama.cpp project is located.

+
+
+
+ +
+
+grag.quantize.utils.fetch_model_repo(repo_id: str, root_path: str | Path) None[source]
+

Download model from huggingface.co/models.

+
+
Parameters:
+
    +
  • repo_id (str) – Repository ID of the model to download.

  • +
  • root_path (str) – The root path where the model should be downloaded or copied.

  • +
+
+
+
+ +
+
+grag.quantize.utils.get_llamacpp_repo(root_path: str | Path) CompletedProcess[source]
+

Clones or pulls the llama.cpp repository into the specified root path.

+
+
Parameters:
+

root_path – The root directory where the llama.cpp repository will be cloned or updated.

+
+
Returns:
+

A subprocess.CompletedProcess instance containing the result of the git operation.

+
+
+
+ +
+
+grag.quantize.utils.quantize_model(model_dir_path: str | Path, quantization: str, root_path: str | Path, output_dir: str | Path | None = None) None[source]
+

Quantizes a specified model using a given quantization level.

+
+
Parameters:
+
    +
  • output_dir (str, Path, optional) – Directory to save quantized model. Defaults to None

  • +
  • model_dir_path (str, Path) – The directory path of the model to be quantized.

  • +
  • quantization (str) – The quantization level to apply.

  • +
  • root_path (str, Path) – The root directory path of the project.

  • +
+
+
+
+ +
+
+

Module contents

+
+
+ + +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/grag.rag.html b/src/docs/_build/html/grag.rag.html new file mode 100644 index 0000000..c041194 --- /dev/null +++ b/src/docs/_build/html/grag.rag.html @@ -0,0 +1,265 @@ + + + + + + + grag.rag package — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

grag.rag package

+
+

Submodules

+
+
+

grag.rag.basic_rag module

+

Class for Basic RAG.

+

This module provides: +- BasicRAG

+
+
+class grag.rag.basic_rag.BasicRAG(retriever: Retriever | None = None, model_name=None, doc_chain='stuff', task='QA', llm_kwargs=None, retriever_kwargs=None, custom_prompt: Prompt | FewShotPrompt | None = None)[source]
+

Bases: object

+

Class for Basis RAG.

+
+
+model_name[source]
+

Name of the llm model

+
+
Type:
+

str

+
+
+
+ +
+
+doc_chain[source]
+

Name of the document chain, (“stuff”, “refine”), defaults to “stuff”

+
+
Type:
+

str

+
+
+
+ +
+
+task[source]
+

Name of task, defaults to “QA”

+
+
Type:
+

str

+
+
+
+ +
+
+llm_kwargs[source]
+

Keyword arguments for LLM class

+
+
Type:
+

dict

+
+
+
+ +
+
+retriever_kwargs[source]
+

Keyword arguments for Retriever class

+
+
Type:
+

dict

+
+
+
+ +
+
+custom_prompt[source]
+

Prompt, defaults to None

+
+
Type:
+

Prompt

+
+
+
+ +
+
+property doc_chain[source]
+

Returns the doc_chain.

+
+ +
+
+property model_name[source]
+

Return the name of the model.

+
+ +
+
+static output_parser(call_func)[source]
+

Decorator to format llm output.

+
+ +
+
+prompt_matcher()[source]
+

Matches relvant prompt using model, task and doc_chain.

+
+ +
+
+refine_call(**kwargs)[source]
+
+ +
+
+stuff_call(**kwargs)[source]
+
+ +
+
+static stuff_docs(docs: List[Document]) str[source]
+

Concatenates docs into a string seperated by ‘nn’.

+
+
Parameters:
+

docs – List of langchain_core.documents.Document

+
+
Returns:
+

string of document page content joined by ‘nn’

+
+
+
+ +
+
+property task[source]
+

Returns the task.

+
+ +
+ +
+
+

Module contents

+
+
+ + +
+
+
+ +
+ +
+

© Copyright 2024, Arjun Bingly, Sanchit Vijay, Erica Pham, Kunal Inglunkar.

+
+ + Built with Sphinx using a + theme + provided by Read the Docs. + + +
+
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/index.html b/src/docs/_build/html/index.html new file mode 100644 index 0000000..e895724 --- /dev/null +++ b/src/docs/_build/html/index.html @@ -0,0 +1,131 @@ + + + + + + + Welcome to GRAG’s documentation! — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +

sphinx-quickstart on Wed Mar 27 13:21:21 2024. +You can adapt this file completely to your liking, but it should at least +contain the root toctree directive.

+
+

Welcome to GRAG’s documentation!

+
+

Contents:

+ +
+
+
+

Indices and tables

+ +
+ + +
+
+
+ +
+ +
+

© Copyright 2024, Arjun Bingly, Sanchit Vijay, Erica Pham, Kunal Inglunkar.

+
+ + Built with Sphinx using a + theme + provided by Read the Docs. + + +
+
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/modules.html b/src/docs/_build/html/modules.html new file mode 100644 index 0000000..98735cd --- /dev/null +++ b/src/docs/_build/html/modules.html @@ -0,0 +1,148 @@ + + + + + + + grag — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/src/docs/_build/html/objects.inv b/src/docs/_build/html/objects.inv new file mode 100644 index 0000000..69c770c Binary files /dev/null and b/src/docs/_build/html/objects.inv differ diff --git a/src/docs/_build/html/py-modindex.html b/src/docs/_build/html/py-modindex.html new file mode 100644 index 0000000..a918bfe --- /dev/null +++ b/src/docs/_build/html/py-modindex.html @@ -0,0 +1,213 @@ + + + + + + Python Module Index — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+
    +
  • + +
  • +
  • +
+
+
+
+
+ + +

Python Module Index

+ +
+ g +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
 
+ g
+ grag +
    + grag.components +
    + grag.components.embedding +
    + grag.components.llm +
    + grag.components.multivec_retriever +
    + grag.components.parse_pdf +
    + grag.components.prompt +
    + grag.components.text_splitter +
    + grag.components.utils +
    + grag.components.vectordb +
    + grag.components.vectordb.base +
    + grag.components.vectordb.chroma_client +
    + grag.components.vectordb.deeplake_client +
    + grag.prompts +
    + grag.quantize +
    + grag.quantize.quantize +
    + grag.quantize.utils +
    + grag.rag +
    + grag.rag.basic_rag +
+ + +
+
+
+ +
+ +
+

© Copyright 2024, Arjun Bingly, Sanchit Vijay, Erica Pham, Kunal Inglunkar.

+
+ + Built with Sphinx using a + theme + provided by Read the Docs. + + +
+
+
+
+
+ + + + \ No newline at end of file diff --git a/src/docs/_build/html/search.html b/src/docs/_build/html/search.html new file mode 100644 index 0000000..b83ad09 --- /dev/null +++ b/src/docs/_build/html/search.html @@ -0,0 +1,123 @@ + + + + + + Search — GRAG 0.0.1 documentation + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+
    +
  • + +
  • +
  • +
+
+
+
+
+ + + + +
+ +
+ +
+
+
+ +
+ +
+

© Copyright 2024, Arjun Bingly, Sanchit Vijay, Erica Pham, Kunal Inglunkar.

+
+ + Built with Sphinx using a + theme + provided by Read the Docs. + + +
+
+
+
+
+ + + + + + + + + \ No newline at end of file diff --git a/src/docs/_build/html/searchindex.js b/src/docs/_build/html/searchindex.js new file mode 100644 index 0000000..536df3b --- /dev/null +++ b/src/docs/_build/html/searchindex.js @@ -0,0 +1 @@ +Search.setIndex({"docnames": ["grag", "grag.components", "grag.components.vectordb", "grag.prompts", "grag.quantize", "grag.rag", "index", "modules"], "filenames": ["grag.rst", "grag.components.rst", "grag.components.vectordb.rst", "grag.prompts.rst", "grag.quantize.rst", "grag.rag.rst", "index.rst", "modules.rst"], "titles": ["grag package", "grag.components package", "grag.components.vectordb package", "grag.prompts package", "grag.quantize package", "grag.rag package", "Welcome to GRAG\u2019s documentation!", "grag"], "terms": {"compon": [0, 7], "vectordb": [0, 1], "submodul": [0, 7], "base": [0, 1, 5], "chroma_cli": [0, 1], "deeplake_cli": [0, 1], "embed": [0, 2, 7], "embedding_typ": [0, 1, 2], "embedding_model": [0, 1, 2], "embedding_funct": [0, 1, 2], "llm": [0, 3, 5, 7], "model_nam": [0, 1, 5], "device_map": [0, 1], "task": [0, 1, 5], "max_new_token": [0, 1], "temperatur": [0, 1], "n_batch": [0, 1], "n_ctx": [0, 1], "n_gpu_lay": [0, 1], "hf_pipelin": [0, 1], "llama_cpp": [0, 1], "load_model": [0, 1], "model_path": [0, 1], "multivec_retriev": [0, 7], "retriev": [0, 1, 5], "store_path": [0, 1, 2], "id_kei": [0, 1], "store": [0, 1, 2], "splitter": [0, 1], "namespac": [0, 1], "top_k": [0, 1, 2], "aadd_doc": [0, 1, 2], "add_doc": [0, 1, 2], "aget_chunk": [0, 1, 2], "aget_doc": [0, 1], "aingest": [0, 1], "gen_doc_id": [0, 1], "get_chunk": [0, 1, 2], "get_doc": [0, 1], "get_docs_from_chunk": [0, 1], "id_gen": [0, 1], "ingest": [0, 1], "split_doc": [0, 1], "parse_pdf": [0, 7], "parsepdf": [0, 1], "single_text_out": [0, 1], "strategi": [0, 1], "extract_image_block_typ": [0, 1], "infer_table_structur": [0, 1], "extract_imag": [0, 1], "image_output_dir": [0, 1], "add_captions_to_text": [0, 1], 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(grag.rag.basic_rag.basicrag static method)": [[5, "grag.rag.basic_rag.BasicRAG.stuff_docs"]], "task (grag.rag.basic_rag.basicrag attribute)": [[5, "grag.rag.basic_rag.BasicRAG.task"]], "task (grag.rag.basic_rag.basicrag property)": [[5, "id2"]]}}) \ No newline at end of file diff --git a/src/docs/conf.py b/src/docs/conf.py new file mode 100644 index 0000000..a300a9d --- /dev/null +++ b/src/docs/conf.py @@ -0,0 +1,83 @@ +# Configuration file for the Sphinx documentation builder. +# +# This file only contains a selection of the most common options. For a full +# list see the documentation: +# https://www.sphinx-doc.org/en/master/usage/configuration.html + +# -- Path setup -------------------------------------------------------------- + +# If extensions (or modules to document with autodoc) are in another directory, +# add these directories to sys.path here. If the directory is relative to the +# documentation root, use os.path.abspath to make it absolute, like shown here. +# +import os +import sys + +sys.path.insert(0, os.path.abspath('../grag')) + +# -- Project information ----------------------------------------------------- + +project = 'GRAG' +copyright = '2024, Arjun Bingly, Sanchit Vijay, Erica Pham, Kunal Inglunkar' +author = 'Arjun Bingly, Sanchit Vijay, Erica Pham, Kunal Inglunkar' + +# The full version, including alpha/beta/rc tags +release = '0.0.1' + +# -- General configuration --------------------------------------------------- + +html_context = { + "display_github": True, # Integrate GitHub + "github_user": "arjbingly", # Username + "github_repo": "Capstone_5", # Repo name + "github_version": "main", # Version + "conf_py_path": "/src/", # Path in the checkout to the docs root +} + +# Add any Sphinx extension module names here, as strings. They can be +# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom +# ones. +extensions = [ + "autoclasstoc", + "sphinx.ext.autodoc", + "sphinx.ext.todo", + # "sphinx.ext.viewcode", + "sphinx.ext.napoleon", + "sphinx.ext.linkcode", + # "sphinx_github_style" +] + + +# Linkcode settings +def linkcode_resolve(domain, info): + if domain != 'py': + return None + if not info['module']: + return None + filename = info['module'].replace('.', '/') + # return "https://somesite/sourcerepo/%s.py" % filename + return f"https://github.com/{html_context['github_user']}/{html_context['github_repo']}/blob/{html_context['github_version']}/{html_context['conf_py_path']}/{filename}.py" + + +# Napoleon settings +napoleon_google_docstring = True + +# Add any paths that contain templates here, relative to this directory. +templates_path = ['_templates'] + +# List of patterns, relative to source directory, that match files and +# directories to ignore when looking for source files. +# This pattern also affects html_static_path and html_extra_path. +exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] + +# -- Options for HTML output ------------------------------------------------- + +# The theme to use for HTML and HTML Help pages. See the documentation for +# a list of builtin themes. +# +html_theme = 'sphinx_rtd_theme' + +# Add any paths that contain custom static files (such as style sheets) here, +# relative to this directory. They are copied after the builtin static files, +# so a file named "default.css" will overwrite the builtin "default.css". +html_static_path = ['_static'] diff --git a/src/docs/grag.components.rst b/src/docs/grag.components.rst new file mode 100644 index 0000000..d4c09c2 --- /dev/null +++ b/src/docs/grag.components.rst @@ -0,0 +1,77 @@ +grag.components package +======================= + +Subpackages +----------- + +.. toctree:: + :maxdepth: 4 + + grag.components.vectordb + +Submodules +---------- + +grag.components.embedding module +-------------------------------- + +.. automodule:: grag.components.embedding + :members: + :undoc-members: + :show-inheritance: + +grag.components.llm module +-------------------------- + +.. automodule:: grag.components.llm + :members: + :undoc-members: + :show-inheritance: + +grag.components.multivec\_retriever module +------------------------------------------ + +.. automodule:: grag.components.multivec_retriever + :members: + :undoc-members: + :show-inheritance: + +grag.components.parse\_pdf module +--------------------------------- + +.. automodule:: grag.components.parse_pdf + :members: + :undoc-members: + :show-inheritance: + +grag.components.prompt module +----------------------------- + +.. automodule:: grag.components.prompt + :members: + :undoc-members: + :show-inheritance: + +grag.components.text\_splitter module +------------------------------------- + +.. automodule:: grag.components.text_splitter + :members: + :undoc-members: + :show-inheritance: + +grag.components.utils module +---------------------------- + +.. automodule:: grag.components.utils + :members: + :undoc-members: + :show-inheritance: + +Module contents +--------------- + +.. automodule:: grag.components + :members: + :undoc-members: + :show-inheritance: diff --git a/src/docs/grag.components.vectordb.rst b/src/docs/grag.components.vectordb.rst new file mode 100644 index 0000000..f7c1c56 --- /dev/null +++ b/src/docs/grag.components.vectordb.rst @@ -0,0 +1,37 @@ +grag.components.vectordb package +================================ + +Submodules +---------- + +grag.components.vectordb.base module +------------------------------------ + +.. automodule:: grag.components.vectordb.base + :members: + :undoc-members: + :show-inheritance: + +grag.components.vectordb.chroma\_client module +---------------------------------------------- + +.. automodule:: grag.components.vectordb.chroma_client + :members: + :undoc-members: + :show-inheritance: + +grag.components.vectordb.deeplake\_client module +------------------------------------------------ + +.. automodule:: grag.components.vectordb.deeplake_client + :members: + :undoc-members: + :show-inheritance: + +Module contents +--------------- + +.. automodule:: grag.components.vectordb + :members: + :undoc-members: + :show-inheritance: diff --git a/src/docs/grag.prompts.rst b/src/docs/grag.prompts.rst new file mode 100644 index 0000000..56f2b49 --- /dev/null +++ b/src/docs/grag.prompts.rst @@ -0,0 +1,10 @@ +grag.prompts package +==================== + +Module contents +--------------- + +.. automodule:: grag.prompts + :members: + :undoc-members: + :show-inheritance: diff --git a/src/docs/grag.quantize.rst b/src/docs/grag.quantize.rst new file mode 100644 index 0000000..eaaa0e8 --- /dev/null +++ b/src/docs/grag.quantize.rst @@ -0,0 +1,29 @@ +grag.quantize package +===================== + +Submodules +---------- + +grag.quantize.quantize module +----------------------------- + +.. automodule:: grag.quantize.quantize + :members: + :undoc-members: + :show-inheritance: + +grag.quantize.utils module +-------------------------- + +.. automodule:: grag.quantize.utils + :members: + :undoc-members: + :show-inheritance: + +Module contents +--------------- + +.. automodule:: grag.quantize + :members: + :undoc-members: + :show-inheritance: diff --git a/src/docs/grag.rag.rst b/src/docs/grag.rag.rst new file mode 100644 index 0000000..33c8f39 --- /dev/null +++ b/src/docs/grag.rag.rst @@ -0,0 +1,21 @@ +grag.rag package +================ + +Submodules +---------- + +grag.rag.basic\_rag module +-------------------------- + +.. automodule:: grag.rag.basic_rag + :members: + :undoc-members: + :show-inheritance: + +Module contents +--------------- + +.. automodule:: grag.rag + :members: + :undoc-members: + :show-inheritance: diff --git a/src/docs/grag.rst b/src/docs/grag.rst new file mode 100644 index 0000000..995ecce --- /dev/null +++ b/src/docs/grag.rst @@ -0,0 +1,21 @@ +grag package +============ + +Subpackages +----------- + +.. toctree:: + :maxdepth: 4 + + grag.components + grag.prompts + grag.quantize + grag.rag + +Module contents +--------------- + +.. automodule:: grag + :members: + :undoc-members: + :show-inheritance: diff --git a/src/docs/index.rst b/src/docs/index.rst new file mode 100644 index 0000000..c1b351d --- /dev/null +++ b/src/docs/index.rst @@ -0,0 +1,20 @@ +.. GRAG documentation master file, created by +sphinx-quickstart on Wed Mar 27 13:21:21 2024. +You can adapt this file completely to your liking, but it should at least +contain the root `toctree` directive. + +Welcome to GRAG's documentation! +================================ + +.. toctree:: + :maxdepth: 2 + :caption: Contents: + + grag + +Indices and tables +================== + +* :ref:`genindex` +* :ref:`modindex` +* :ref:`search` diff --git a/src/docs/make.bat b/src/docs/make.bat new file mode 100644 index 0000000..954237b --- /dev/null +++ b/src/docs/make.bat @@ -0,0 +1,35 @@ +@ECHO OFF + +pushd %~dp0 + +REM Command file for Sphinx documentation + +if "%SPHINXBUILD%" == "" ( + set SPHINXBUILD=sphinx-build +) +set SOURCEDIR=. +set BUILDDIR=_build + +%SPHINXBUILD% >NUL 2>NUL +if errorlevel 9009 ( + echo. + echo.The 'sphinx-build' command was not found. Make sure you have Sphinx + echo.installed, then set the SPHINXBUILD environment variable to point + echo.to the full path of the 'sphinx-build' executable. Alternatively you + echo.may add the Sphinx directory to PATH. + echo. + echo.If you don't have Sphinx installed, grab it from + echo.https://www.sphinx-doc.org/ + exit /b 1 +) + +if "%1" == "" goto help + +%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% +goto end + +:help +%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% + +:end +popd diff --git a/src/docs/modules.rst b/src/docs/modules.rst new file mode 100644 index 0000000..6fb3ecc --- /dev/null +++ b/src/docs/modules.rst @@ -0,0 +1,7 @@ +grag +==== + +.. toctree:: + :maxdepth: 4 + + grag diff --git a/src/grag/prompts/__init__.py b/src/grag/prompts/__init__.py index cf6b3bc..fd92a06 100644 --- a/src/grag/prompts/__init__.py +++ b/src/grag/prompts/__init__.py @@ -1,7 +1 @@ -{ - "input_keys": ["context", "question"], - "template": "[INST] <>\nYou are a helpful, respectful and honest assistant.\n\nAlways answer based only on the provided context. If the question can not be answered from the provided context, just say that you don't know, don't try to make up an answer.\n<>\n\nUse the following pieces of context to answer the question at the end:\n\n\n{context}\n\n\nQuestion: {question}\n\nHelpful Answer: [/INST]", - "llm_type": "Llama-2", - "source": "https://github.com/hwchase17/langchain-hub/blob/master/prompts/vector_db_qa/prompt.json", - "task": "QA", -} +"""Contains all the provided prompts for different LLMs."""