GitHub - arjun0502/CEDAR: Analysis of single-cell RNA-sequencing data at Cancer Early Detection Advanced Research (CEDAR) Center using R. Purpose of analysis is to understand the fundamentals of epigenetic and transcriptional regulation in hormone driven cancers such as breast and prostate cancer.

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Analysis of single-cell RNA-sequencing data at Cancer Early Detection Advanced Research (CEDAR) Center using R. Purpose of analysis is to understand the fundamentals of epigenetic and transcriptional regulation in hormone driven cancers such as breast and prostate cancer.

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Analysis of RIME data of AR in LNCAP prostate and ZR751 breast cancer cell lines.R		Analysis of RIME data of AR in LNCAP prostate and ZR751 breast cancer cell lines.R
Analysis of each cell line and their DE genes in MCF10A progression series.R		Analysis of each cell line and their DE genes in MCF10A progression series.R
Basal and Luminal cell signature in MCF7 cells.Rmd		Basal and Luminal cell signature in MCF7 cells.Rmd
Basal and Luminal scoring.R		Basal and Luminal scoring.R
Expression of nearby genes to KLF4 binding sites in MCF7 and T47D data.R		Expression of nearby genes to KLF4 binding sites in MCF7 and T47D data.R
Initial Analysis of Normal Breast vs. MCF7 data.R		Initial Analysis of Normal Breast vs. MCF7 data.R
KLF4 Analysis of Chung et al data.R		KLF4 Analysis of Chung et al data.R
MCF7 correlation heatmaps.Rmd		MCF7 correlation heatmaps.Rmd
NormalizeData - Analysis of Normal Breast Epithelium 10x Data.R		NormalizeData - Analysis of Normal Breast Epithelium 10x Data.R
Topic Modeling of MCF10A dataset - regressed out shared CNV genes.R		Topic Modeling of MCF10A dataset - regressed out shared CNV genes.R
Topic modeling of MCF-10A progression series data.R		Topic modeling of MCF-10A progression series data.R