-``` r
+```r
# Install most recent released version
devtools::install_github("bailey-lab/miplicorn@v0.2.1")
```
@@ -36,7 +36,7 @@ devtools::install_github("bailey-lab/miplicorn@v0.2.1")
-``` r
+```r
# Install development version
devtools::install_github("bailey-lab/miplicorn")
```
@@ -48,7 +48,7 @@ devtools::install_github("bailey-lab/miplicorn")
See `vignette("miplicorn")` for a more extensive introduction and a
demonstration of several features of the package.
-``` r
+```r
library(miplicorn)
ref_file <- miplicorn_example("reference_AA_table.csv")
@@ -74,7 +74,7 @@ plot_coverage(data, mutation_name)
-``` r
+```r
prev <- mutation_prevalence(data, threshold = 5)
prev
diff --git a/inst/WORDLIST b/inst/WORDLIST
index 457b5c0..73a5efc 100644
--- a/inst/WORDLIST
+++ b/inst/WORDLIST
@@ -1,42 +1,87 @@
Amplicon
amplicon
+Aris
+arispas
+bootswatch
+bslib
+cgi
CMD
Codecov
+codecov
colour
coloured
colours
+config
+covr
dbplyr
+desc
dplyr
dtplyr
+env
erroring
eval
extdata
falciparum
+faq
filepath
+Fira
+gff
ggplot
+gh
Github
+github
+haplotyping
+href
+http
+https
+io
+JamesIves
karyoplot
karyoploteR
+Lato
Lifecycle
+macOS
magrittr
+MERCHANTABILITY
Metaprogramming
MIP
miplicorn
MIPTools
MIPtools
+monospace
NaN
+nav
+navbar
+ncbi
+nih
+nlm
+NONINFRINGEMENT
+oldrel
ORCID
+os
+pandoc
+Paschalidis
pkgdown
PlasmoDB
Plasmodium
pts
+px
+rcmdcheck
README
rect
+Reprex
rlang
+Rscript
+rspm
signalling
+sublicense
+tbl
tibble
TSV
tunnelled
tunnelling
+ubuntu
UMI
umi
+www
+wwwtax