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C CACCA,CCA 2985 SC;alleleBias BRF=0.65;FR=0.6096,0.0456;HP=1;HapScore=1;MGOF=315;MMLQ=32;MQ=57.51;NF=383,383;NR=9,9;PP=2985,30;QD=20;SC=CACACACACACCACCCACACA;SbPval=0.72;Source=Platypus;TC=1812;TCF=1760;TCR=52;TR=392,392;WE=88;WS=0 GT:GL:GOF:GQ:NR:NV 1/1:-1,-1,-1:61:15:23,23:4,4 1/1:-1,-1,-1:19:10:12,12:1,1 1/1:-1,-1,-1:11:10:9,9:3,3 1/2:-1,-1,-1:13:13:4,4:2,2 1/1:-1,-1,-1:53:12:42,42:10,10 1/1:-1,-1,-1:12:9:4,4:1,1 1/1:-1,-1,-1:20:10:16,16:3,3 1/1:-1,-1,-1:14:8:5,5:2,2 1/1:-1,-1,-1:213:12:3,3:1,1 1/0:-1,-1,-1:96:55:57,57:9,9 1/1:-1,-1,-1:98:89:69,69:15,15 1/0:-1,-1,-1:93:75:61,61:13,13 1/1:-1,-1,-1:102:65:38,38:11,11 1/1:-1,-1,-1:127:49:26,26:3,3 1/1:-1,-1,-1:88:99:54,54:10,10 1/1:-1,-1,-1:69:9:59,59:12,12 1/0:-1,-1,-1:111:99:55,55:12,12 1/0:-1,-1,-1:80:99:49,49:15,15 1/1:-1,-1,-1:97:28:72,72:9,9 1/2:-1,-1,-1:136:14:184,184:54,54 1/1:-1,-1,-1:101:51:40,40:10,10 1/1:-1,-1,-1:126:68:85,85:20,20 1/0:-1,-1,-1:116:88:52,52:14,14 1/1:-1,-1,-1:138:87:78,78:17,17 1/0:-1,-1,-1:106:44:36,36:7,7 1/2:-1,-1,-1:63:13:48,48:8,8 1/1:-1,-1,-1:91:37:32,32:9,9 1/1:-1,-1,-1:99:99:72,72:21,21 1/1:-1,-1,-1:76:12:11,11:2,2 1/2:-1,-1,-1:43:4:15,15:4,4 1/1:-1,-1,-1:117:5:13,13:1,1 1/1:-1,-1,-1:147:48:8,8:1,1 1/1:-1,-1,-1:105:15:19,19:2,2 1/1:-1,-1,-1:139:13:12,12:1,1 1/1:-1,-1,-1:116:12:15,15:1,1 1/1:-1,-1,-1:80:9:12,12:2,2 1/1:-1,-1,-1:54:9:15,15:2,2 1/2:-1,-1,-1:194:15:22,22:5,5 1/1:-1,-1,-1:149:6:19,19:2,2 1/0:-1,-1,-1:192:10:21,21:0,0 1/1:-1,-1,-1:257:27:13,13:2,2 1/1:-1,-1,-1:241:17:7,7:2,2 1/1:-1,-1,-1:315:12:11,11:3,3 1/1:-1,-1,-1:58:9:15,15:3,3 1/2:-1,-1,-1:47:15:15,15:2,2 1/1:-1,-1,-1:117:59:59,59:10,10 1/1:-1,-1,-1:108:54:44,44:11,11 1/0:-1,-1,-1:108:26:75,75:18,18 1/0:-1,-1,-1:108:50:106,106:22,22 chrXII 28 . A AC 932 SC;QD;alleleBias BRF=0.65;FR=0.0696;HP=3;HapScore=1;MGOF=314;MMLQ=37;MQ=55.88;NF=635;NR=30;PP=932;QD=1.43458646617;SC=CACACACCACACCACACACCA;SbPval=1.0;Source=Platypus;TC=4088;TCF=3768;TCR=320;TR=665;WE=88;WS=0 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-17.12,-300.0:61:99:67:9 0/0:0.0,-14.2,-156.15:19:99:36:2 0/0:0.0,-5.75,-125.85:11:57:29:6 0/1:-7.66,0.0,-53.64:13:77:17:4 0/0:0.0,-35.88,-300.0:53:99:89:11 0/0:0.0,-4.05,-68.06:11:41:17:3 0/0:0.0,-4.68,-121.73:20:47:31:5 0/0:0.0,-8.16,-82.0:14:82:13:2 0/0:0.0,-33.33,-300.0:213:99:20:3 0/0:0.0,-21.07,-300.0:96:99:112:19 0/0:0.0,-31.01,-300.0:98:99:165:27 0/1:-3.19,0.0,-300.0:93:32:110:19 0/0:0.0,-32.88,-300.0:102:99:102:18 0/0:0.0,-12.84,-300.0:127:99:70:9 0/1:-21.85,0.0,-300.0:88:99:120:18 0/0:0.0,-17.19,-300.0:69:99:127:18 0/1:-3.14,0.0,-300.0:111:31:119:20 0/1:-12.26,0.0,-300.0:80:99:105:22 0/0:0.0,-8.4,-300.0:97:84:153:24 0/0:0.0,-89.22,-300.0:136:99:370:73 0/0:0.0,-16.24,-300.0:101:99:86:15 0/0:0.0,-38.38,-300.0:126:99:194:38 0/0:0.0,-32.47,-300.0:116:99:136:27 0/0:0.0,-48.63,-300.0:138:99:162:29 0/0:0.0,-25.21,-300.0:106:99:72:12 0/1:-0.66,0.0,-299.24:63:7:134:14 0/0:0.0,-30.84,-300.0:91:99:92:15 0/0:0.0,-35.29,-300.0:99:99:131:28 0/0:0.0,-19.7,-285.5:76:99:28:3 0/0:0.0,-9.41,-213.46:43:94:36:5 0/0:0.0,-28.09,-300.0:116:99:25:2 0/0:0.0,-33.05,-300.0:147:99:26:1 0/0:0.0,-13.87,-300.0:105:99:45:6 0/0:0.0,-18.84,-300.0:139:99:33:7 0/0:0.0,-20.33,-300.0:116:99:26:1 0/0:0.0,-12.44,-300.0:80:99:33:3 0/0:0.0,-11.44,-300.0:54:99:48:4 0/0:0.0,-33.78,-300.0:193:99:43:6 0/0:0.0,-25.57,-300.0:149:99:47:4 0/0:0.0,-28.84,-300.0:192:99:47:4 0/0:0.0,-70.12,-300.0:256:99:37:6 0/0:0.0,-41.62,-300.0:240:99:29:9 0/0:0.0,-27.42,-300.0:314:99:28:7 0/0:0.0,-21.21,-290.86:58:99:35:6 0/0:0.0,-16.94,-292.75:47:99:34:3 0/1:-49.57,0.0,-300.0:117:99:133:20 0/0:0.0,-22.97,-300.0:108:99:104:17 0/0:0.0,-9.77,-300.0:108:98:156:26 0/0:0.0,-3.9,-300.0:108:39:216:35 chrXII 40 . A AC 2978 SC;alleleBias BRF=0.65;FR=0.3268;HP=3;HapScore=1;MGOF=314;MMLQ=32;MQ=55.76;NF=818;NR=42;PP=2978;QD=20;SC=CACACACCACACCACACACCA;SbPval=1.0;Source=Platypus;TC=6089;TCF=5510;TCR=579;TR=860;WE=88;WS=0 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-17.63,-300.0:61:99:127:14 0/0:0.0,-16.0,-191.35:19:99:54:8 0/0:0.0,-13.39,-196.75:11:99:52:7 0/1:-4.68,0.0,-80.97:13:47:26:4 0/0:0.0,-38.88,-300.0:53:99:124:16 0/0:0.0,-5.22,-78.52:11:52:26:6 0/0:0.0,-7.99,-130.21:20:80:38:7 0/0:0.0,-7.31,-104.6:14:73:27:3 0/1:-24.34,0.0,-300.0:213:99:37:3 0/1:-30.78,0.0,-300.0:96:99:161:27 0/1:-36.97,0.0,-300.0:98:99:232:36 0/1:-7.18,0.0,-299.34:93:72:145:22 0/1:-22.61,0.0,-300.0:102:99:139:22 0/1:-48.25,0.0,-300.0:127:99:106:16 0/1:-37.23,0.0,-299.34:88:99:185:25 0/0:0.0,-6.15,-300.0:69:61:191:23 0/1:-48.56,0.0,-299.34:111:99:165:24 0/1:-11.85,0.0,-299.04:80:99:156:25 0/1:-36.68,0.0,-300.0:97:99:229:28 0/1:-208.79,0.0,-300.0:136:99:542:97 0/1:-40.24,0.0,-300.0:101:99:147:19 0/1:-97.49,0.0,-300.0:126:99:279:47 0/1:-45.69,0.0,-300.0:116:99:199:32 0/1:-91.94,0.0,-300.0:138:99:240:40 0/1:-41.73,0.0,-300.0:106:99:108:15 0/0:0.0,-5.35,-297.99:63:54:201:15 0/1:-31.41,0.0,-300.0:91:99:136:18 0/1:-39.69,0.0,-299.06:99:99:201:36 0/0:0.0,-11.06,-250.01:76:99:43:3 0/0:0.0,-11.47,-236.08:43:99:58:9 0/0:0.0,-6.39,-299.21:116:64:48:3 0/1:-10.4,0.0,-300.0:147:99:45:2 0/0:0.0,-1.64,-299.76:105:17:59:6 0/1:-7.36,0.0,-300.0:139:74:55:8 0/1:-7.15,0.0,-192.8:116:71:33:2 0/0:0.0,-8.32,-248.93:80:83:49:4 0/0:0.0,-2.66,-300.0:54:27:78:4 0/1:-40.23,0.0,-300.0:193:99:67:11 0/1:-15.22,0.0,-299.75:149:99:67:6 0/1:-26.54,0.0,-299.87:192:99:67:6 0/1:-56.48,0.0,-300.0:256:99:55:8 0/1:-10.49,0.0,-300.0:240:99:44:11 0/1:-45.76,0.0,-300.0:314:99:39:10 0/0:0.0,-10.45,-266.14:58:99:54:6 0/0:0.0,-4.26,-255.73:47:43:54:3 0/1:-92.46,0.0,-299.34:117:99:203:25 0/1:-35.77,0.0,-300.0:108:99:149:20 0/1:-39.12,0.0,-299.16:108:99:231:30 0/1:-23.21,0.0,-300.0:108:99:318:48 chrXII 42 . CA C 2973 SC;alleleBias BRF=0.65;FR=0.3166;HP=1;HapScore=1;MGOF=314;MMLQ=32;MQ=55.7;NF=847;NR=42;PP=2973;QD=20;SC=CACACCACACCACACACCACA;SbPval=1.0;Source=Platypus;TC=6403;TCF=5784;TCR=619;TR=889;WE=88;WS=0 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-30.49,-300.0:61:99:128:14 0/0:0.0,-16.0,-191.35:19:99:56:8 0/0:0.0,-13.39,-196.75:11:99:54:8 0/0:0.0,-11.5,-93.43:13:99:27:4 0/0:0.0,-38.88,-300.0:53:99:132:16 0/0:0.0,-5.55,-86.75:11:56:30:7 0/0:0.0,-8.0,-130.21:20:80:40:7 0/0:0.0,-7.31,-104.61:14:73:28:3 0/1:-24.34,0.0,-300.0:213:99:38:3 0/1:-30.78,0.0,-300.0:96:99:169:29 0/1:-36.97,0.0,-300.0:98:99:240:37 0/1:-7.18,0.0,-299.37:93:72:150:23 0/1:-22.61,0.0,-300.0:102:99:144:23 0/1:-48.25,0.0,-300.0:127:99:111:16 0/1:-37.23,0.0,-299.37:88:99:193:26 0/0:0.0,-6.15,-300.0:69:61:193:23 0/1:-48.56,0.0,-299.37:111:99:173:24 0/1:-11.85,0.0,-299.07:80:99:169:27 0/1:-36.68,0.0,-300.0:97:99:240:30 0/1:-208.79,0.0,-300.0:136:99:562:98 0/1:-40.24,0.0,-300.0:101:99:149:19 0/1:-97.49,0.0,-300.0:126:99:294:50 0/1:-45.69,0.0,-300.0:116:99:214:36 0/1:-91.94,0.0,-300.0:138:99:249:40 0/1:-41.73,0.0,-300.0:106:99:118:15 0/0:0.0,-5.35,-298.01:63:54:220:16 0/1:-31.41,0.0,-300.0:91:99:146:18 0/1:-39.69,0.0,-299.09:99:99:210:36 0/0:0.0,-11.06,-250.01:76:99:46:3 0/0:0.0,-11.47,-258.66:43:99:62:9 0/0:0.0,-6.39,-299.24:116:64:52:3 0/1:-10.4,0.0,-300.0:147:99:47:2 0/0:0.0,-1.64,-299.79:105:17:64:6 0/1:-7.36,0.0,-300.0:139:74:61:9 0/1:-7.15,0.0,-192.8:116:71:33:2 0/0:0.0,-8.32,-256.32:80:83:53:5 0/0:0.0,-2.66,-300.0:54:27:80:4 0/1:-40.23,0.0,-300.0:193:99:72:11 0/1:-15.22,0.0,-299.78:149:99:72:6 0/1:-26.54,0.0,-299.9:192:99:75:7 0/1:-56.48,0.0,-300.0:256:99:58:8 0/1:-10.49,0.0,-300.0:240:99:47:11 0/1:-45.76,0.0,-300.0:314:99:50:11 0/0:0.0,-10.45,-266.14:58:99:58:6 0/0:0.0,-4.26,-255.77:47:43:56:3 0/1:-92.46,0.0,-299.37:117:99:209:25 0/1:-35.77,0.0,-300.0:108:99:155:21 0/1:-39.12,0.0,-299.19:108:99:242:33 0/1:-23.21,0.0,-300.0:108:99:334:48 chrXII 552 . AT A 2967 badReads;MQ BRF=0.81;FR=0.9997;HP=2;HapScore=2;MGOF=46;MMLQ=32;MQ=20.01;NF=0;NR=246;PP=2967;QD=20;SC=CTGGAACATCATTCGCTATCC;SbPval=1.0;Source=Platypus;TC=370;TCF=0;TCR=370;TR=246;WE=560;WS=542 GT:GL:GOF:GQ:NR:NV 1/1:-23.96,-4.48,0.0:13:45:5:4 1/1:-11.36,-3.58,0.0:0:36:2:1 1/1:-19.76,-4.18,0.0:10:42:3:3 ./.:-11.36,-3.58,0.0:0:36:1:1 1/1:-15.56,-3.88,0.0:23:39:3:2 1/1:-15.56,-3.88,0.0:0:39:2:2 1/1:-15.56,-3.88,0.0:0:39:2:2 ./.:0,0,0:0:0:0:0 ./.:-7.16,-3.28,0.0:0:33:0:0 1/1:-41.96,-5.99,0.0:19:60:10:6 1/1:-64.16,-7.8,0.0:15:78:15:9 1/1:-54.56,-6.89,0.0:18:69:12:9 1/1:-35.56,-5.39,0.0:46:54:7:5 1/1:-68.16,-7.8,0.0:24:78:15:13 1/1:-39.76,-5.69,0.0:12:57:11:7 1/1:-40.96,-5.96,0.0:24:60:10:7 1/1:-31.36,-5.09,0.0:7:51:7:5 1/1:-37.96,-5.99,0.0:9:60:10:3 1/1:-54.56,-6.89,0.0:14:69:15:9 1/1:-204.66,-18.31,0.0:25:99:60:40 1/1:-30.36,-5.09,0.0:4:51:7:4 1/1:-97.56,-9.9,0.0:23:99:26:20 1/1:-31.36,-5.09,0.0:8:51:9:5 1/1:-56.76,-7.19,0.0:11:72:13:8 1/1:-22.96,-4.48,0.0:15:45:4:3 1/1:-45.16,-6.29,0.0:18:63:11:6 1/1:-47.16,-6.29,0.0:27:63:11:8 1/1:-58.76,-7.19,0.0:18:72:14:10 ./.:-7.16,-3.28,0.0:0:33:0:0 ./.:-11.36,-3.58,0.0:0:36:1:1 ./.:0,0,0:0:0:0:0 1/1:-17.96,-4.18,0.0:0:42:5:1 ./.:-7.16,-3.28,0.0:0:33:0:0 ./.:-10.46,-3.58,0.0:0:36:1:0 ./.:-7.16,-3.28,0.0:0:33:1:0 1/1:-15.56,-3.88,0.0:5:39:2:2 ./.:-11.36,-3.58,0.0:0:36:1:1 1/1:-10.56,-3.58,0.0:3:36:2:0 1/1:-18.86,-4.18,0.0:3:42:3:2 1/1:-23.96,-4.48,0.0:0:45:4:4 1/1:-15.56,-3.88,0.0:0:39:2:2 1/1:-14.56,-3.88,0.0:0:39:3:1 ./.:-11.36,-3.58,0.0:0:36:1:1 1/1:-31.46,-5.09,0.0:3:51:8:5 ./.:-11.36,-3.58,0.0:0:36:1:1 1/1:-57.76,-7.19,0.0:27:72:16:9 1/1:-42.96,-5.99,0.0:22:60:9:7 1/1:-55.56,-6.89,0.0:12:69:13:10 1/1:-42.96,-5.99,0.0:12:60:12:7 chrXII 591 . TG T 229 badReads;MQ BRF=0.92;FR=0.5038;HP=2;HapScore=2;MGOF=195;MMLQ=32;MQ=7.79;NF=0;NR=22;PP=229;QD=12.6377681759;SC=ACCATCAGCATGGTACCCTCG;SbPval=1.0;Source=Platypus;TC=27;TCF=0;TCR=27;TR=22;WE=599;WS=581 GT:GL:GOF:GQ:NR:NV ./.:-0.31,0.0,-0.29:21:3:1:1 ./.:-0.31,0.0,-0.29:0:3:0:0 ./.:-0.01,0.0,-3.19:34:3:0:0 ./.:-0.01,0.0,-2.29:14:3:1:0 ./.:-0.31,0.0,-0.29:83:3:0:0 ./.:-0.31,0.0,-0.29:21:3:0:0 ./.:-0.31,0.0,-0.29:0:3:1:0 ./.:-0.31,0.0,-0.29:0:3:0:0 ./.:0,0,0:0:0:0:0 ./.:-0.01,0.0,-2.19:6:3:0:0 ./.:-0.31,0.0,-0.29:0:3:0:0 ./.:-3.21,-0.01,0.0:14:3:1:1 0/1:-2.67,0.0,-3.46:195:26:3:2 1/1:-4.21,-0.01,0.0:56:3:2:1 ./.:-0.31,0.0,-0.29:77:3:0:0 ./.:-0.31,0.0,-0.29:18:3:1:1 ./.:-0.31,0.0,-0.29:40:3:0:0 ./.:-0.31,0.0,-0.29:142:3:0:0 0/1:-1.23,0.0,-0.02:30:3:2:2 1/1:-5.91,-0.31,0.0:55:5:4:4 ./.:-4.21,-0.01,0.0:42:3:1:1 1/1:-7.41,-0.31,0.0:49:5:2:2 ./.:-0.31,0.0,-0.29:55:3:0:0 ./.:-0.31,0.0,-0.29:27:3:0:0 ./.:-0.31,0.0,-0.29:51:3:1:1 ./.:-0.31,0.0,-0.29:82:3:0:0 ./.:-0.31,0.0,-0.29:61:3:1:1 ./.:-0.31,0.0,-0.29:30:3:0:0 ./.:0,0,0:0:0:0:0 ./.:-0.31,0.0,-0.29:0:3:0:0 ./.:0,0,0:0:0:0:0 ./.:-0.31,0.0,-0.29:42:3:0:0 ./.:-0.31,0.0,-0.29:0:3:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:-0.01,0.0,-2.79:0:3:0:0 ./.:0,0,0:0:0:0:0 ./.:-0.31,0.0,-0.29:0:3:0:0 ./.:0,0,0:0:0:0:0 ./.:-0.31,0.0,-0.29:0:3:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.29,-5.19:16:5:1:1 ./.:-0.01,0.0,-2.69:26:3:1:1 1/1:-4.41,-0.28,0.0:31:5:2:2 ./.:-0.31,0.0,-0.29:75:3:0:0 0/0:0.0,-0.26,-4.79:33:5:2:1 chrXII 1867 . A G 25 badReads;MQ;QD BRF=0.99;FR=0.1403;HP=1;HapScore=4;MGOF=589;MMLQ=12;MQ=3.89;NF=7;NR=5;PP=25;QD=4.98093437893;SC=CCTGACGTTGATGCTGGCAGT;SbPval=0.36;Source=Platypus;TC=84;TCF=30;TCR=54;TR=12;WE=1875;WS=1851 GT:GL:GOF:GQ:NR:NV 0/1:-0.55,0.0,-7.41:113:7:5:2 ./.:0.0,-0.79,-4.97:21:9:1:0 ./.:0.0,-0.79,-5.69:0:9:1:0 ./.:0.0,-0.79,-3.37:34:9:1:0 0/0:0.0,-1.08,-7.77:149:11:2:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.79,-5.09:79:9:1:0 ./.:0,0,0:0:0:0:0 0/0:0.0,-1.63,-10.78:23:16:4:0 0/1:-3.37,0.0,-2.14:273:21:2:1 ./.:0.0,-0.63,-1.88:62:7:1:0 0/0:0.0,-2.58,-26.99:39:26:7:0 0/0:0.0,-1.08,-8.68:95:11:3:0 0/0:0.0,-0.64,-8.77:41:7:4:1 0/0:0.0,-1.27,-10.87:49:13:3:0 ./.:0.0,-0.88,-5.98:153:9:1:0 0/1:-0.61,0.0,-8.15:52:7:3:1 0/0:0.0,-1.35,-21.29:65:14:7:1 ./.:-0.17,0.0,-0.97:52:4:2:1 ./.:0.0,-0.57,-1.77:54:7:1:0 ./.:0.0,-0.85,-2.99:23:9:1:0 0/0:0.0,-2.37,-24.29:53:24:7:0 ./.:0.0,-0.22,-1.14:589:4:1:0 0/1:-1.67,0.0,-12.37:62:17:6:2 0/0:0.0,-1.66,-14.56:116:17:4:0 0/1:-1.52,0.0,-6.99:23:15:5:2 0/0:0.0,-1.08,-7.28:122:11:2:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.58,-1.79:0:7:0:0 ./.:0.0,-0.79,-5.59:0:9:1:0 ./.:0.0,-0.79,-5.59:0:9:1:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.88,-5.08:0:9:1:0 ./.:0.0,-0.02,-0.89:77:3:3:1 ./.:0.0,-0.79,-5.49:148:9:1:0 0/0:0.0,-0.77,-2.99:108:8:2:0 chrXII 1888 . TTAGTGC CTAGTGC,CTAGTGT 56 badReads;HapScore;MQ BRF=0.99;FR=0.0974,0.1254;HP=1;HapScore=24;MGOF=1151;MMLQ=12;MQ=5.59;NF=10,3;NR=5,1;PP=7,56;QD=2.78474750315;SC=GGTAGTAGCATTAGTGCTGGA;SbPval=0.92;Source=Platypus;TC=78;TCF=30;TCR=48;TR=15,4;WE=1919;WS=1878 GT:GL:GOF:GQ:NR:NV 1/0:-1,-1,-1:82:30:5,5:1,0 0/0:-1,-1,-1:8:7:1,1:0,0 0/0:-1,-1,-1:0:7:1,1:0,0 0/0:-1,-1,-1:0:7:1,1:0,0 2/0:-1,-1,-1:113:6:1,1:1,1 0/0:-1,-1,-1:0:7:1,1:0,0 0/0:-1,-1,-1:0:7:0,0:0,0 ./.:0,0,0:0:0:0:0 2/0:-1,-1,-1:0:7:1,1:1,1 0/0:-1,-1,-1:12:7:1,1:0,0 0/0:-1,-1,-1:35:21:3,3:1,0 1/0:-1,-1,-1:286:7:2,2:1,0 0/0:-1,-1,-1:190:6:1,1:0,0 0/0:-1,-1,-1:32:35:5,5:0,0 2/0:-1,-1,-1:58:16:3,3:1,1 0/0:-1,-1,-1:44:13:4,4:0,0 0/0:-1,-1,-1:40:40:2,2:0,0 ./.:0,0,0:0:0:0:0 1/0:-1,-1,-1:33:16:3,3:2,0 0/0:-1,-1,-1:90:32:8,8:0,0 0/0:-1,-1,-1:63:5:2,2:1,0 0/0:-1,-1,-1:54:7:1,1:0,0 0/0:-1,-1,-1:46:7:1,1:0,0 0/0:-1,-1,-1:37:63:7,7:0,0 2/0:-1,-1,-1:1151:2:1,1:1,0 0/0:-1,-1,-1:68:16:5,5:0,0 0/0:-1,-1,-1:91:10:5,5:0,0 2/0:-1,-1,-1:41:3:2,2:1,0 2/0:-1,-1,-1:59:42:2,2:1,1 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 0/0:-1,-1,-1:0:7:1,1:0,0 ./.:0,0,0:0:0:0:0 1/0:-1,-1,-1:49:3:2,2:0,0 0/0:-1,-1,-1:103:5:3,3:1,0 0/0:-1,-1,-1:323:6:1,1:0,0 2/0:-1,-1,-1:52:5:2,2:2,0 chrXII 1901 . C T 438 badReads;HapScore;MQ BRF=0.99;FR=0.3184;HP=2;HapScore=24;MGOF=1151;MMLQ=22;MQ=11.12;NF=2;NR=18;PP=438;QD=23.6385606274;SC=GTGCTGGAGTCGGTACTTTCA;SbPval=0.98;Source=Platypus;TC=74;TCF=28;TCR=46;TR=20;WE=1919;WS=1878 GT:GL:GOF:GQ:NR:NV 0/1:-2.38,0.0,-1.59:82:15:5:2 ./.:-1.15,0.0,-0.35:8:5:1:1 ./.:0.0,-0.33,-4.3:0:5:1:0 ./.:-3.23,0.0,-0.33:0:5:1:1 ./.:0.0,-0.33,-7.25:113:5:1:0 ./.:-3.03,0.0,-0.33:0:5:1:1 1/1:-6.19,0.0,-0.04:0:3:2:2 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.33,-8.05:0:5:1:0 ./.:0.0,-0.3,-1.77:12:5:1:0 0/1:-3.23,0.0,-2.93:35:28:3:1 0/0:0.0,-1.15,-4.3:286:12:2:0 ./.:0.0,-0.29,-1.71:190:5:1:0 0/1:-6.49,0.0,-2.64:32:26:5:2 0/0:0.0,-2.59,-8.18:58:26:3:0 0/0:0.0,-0.94,-4.77:44:10:4:0 0/1:-3.52,0.0,-3.95:40:34:2:1 ./.:0,0,0:0:0:0:0 0/1:-3.93,0.0,-9.67:33:39:3:1 0/1:-6.29,0.0,-3.58:90:36:7:2 0/0:0.0,-0.55,-2.47:63:7:2:0 ./.:-0.04,0.0,-0.57:54:3:0:0 ./.:0.0,-0.29,-1.7:46:5:1:0 0/1:-9.0,0.0,-5.24:37:52:7:3 ./.:0.0,-1.66,-6.78:1151:17:1:0 0/0:0.0,-0.7,-3.96:68:8:3:0 0/0:0.0,-0.79,-5.01:91:9:5:0 ./.:0.0,-0.13,-1.15:41:3:1:0 0/1:-1.43,0.0,-9.51:59:14:2:1 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:-0.04,0.0,-0.57:0:3:0:0 ./.:0,0,0:0:0:0:0 1/0:-0.67,0.0,-2.47:49:8:3:1 0/0:0.0,-0.53,-2.46:103:6:2:0 ./.:0.0,-0.32,-2.15:323:5:1:0 0/1:-3.83,0.0,-4.86:52:38:2:1 chrXII 1909 . T G 8 Q20;badReads;HapScore;MQ;QD BRF=0.99;FR=0.0892;HP=2;HapScore=24;MGOF=1151;MMLQ=8;MQ=5.95;NF=3;NR=2;PP=8;QD=8.55424250944;SC=GTCGGTACTTTCAGTGGTAGT;SbPval=0.46;Source=Platypus;TC=69;TCF=25;TCR=44;TR=5;WE=1919;WS=1878 GT:GL:GOF:GQ:NR:NV 1/0:-2.09,0.0,-3.1:82:21:3:1 ./.:0.0,-1.01,-5.67:8:10:1:0 ./.:0.0,-1.01,-6.06:0:10:1:0 ./.:0.0,-1.01,-6.12:0:10:1:0 ./.:0.0,-1.01,-6.55:113:10:1:0 ./.:0.0,-1.01,-6.02:0:10:1:0 0/0:0.0,-1.13,-7.46:0:12:2:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-1.01,-7.08:0:10:1:0 ./.:0.0,-0.88,-2.47:12:9:1:0 0/0:0.0,-3.89,-13.08:35:39:3:0 0/0:0.0,-1.99,-5.98:286:20:2:0 ./.:0.0,-1.01,-4.69:190:10:1:0 0/0:0.0,-3.52,-16.87:32:35:5:0 0/0:0.0,-1.15,-7.79:58:12:3:1 0/0:0.0,-1.46,-7.85:44:15:3:0 0/0:0.0,-4.25,-10.57:40:42:2:0 ./.:0,0,0:0:0:0:0 0/0:0.0,-5.53,-11.7:33:55:3:0 0/0:0.0,-3.58,-13.66:90:36:5:0 0/0:0.0,-1.19,-6.98:63:12:2:0 ./.:0.0,-0.77,-2.15:54:8:0:0 ./.:0.0,-0.99,-3.37:46:10:1:0 0/0:0.0,-6.84,-25.27:37:68:7:0 ./.:-0.75,0.0,-2.67:1151:8:1:0 0/0:0.0,-1.52,-10.79:68:15:3:0 0/0:0.0,-0.84,-3.84:91:9:5:1 ./.:0.0,-0.58,-1.86:41:7:1:0 0/0:0.0,-4.89,-13.88:59:49:2:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.77,-2.15:0:8:0:0 ./.:0,0,0:0:0:0:0 1/0:-0.85,0.0,-8.27:49:9:3:1 0/0:0.0,-1.18,-6.56:103:12:2:0 ./.:-2.01,0.0,-0.77:323:8:1:1 0/0:0.0,-1.72,-7.21:52:17:2:0 chrXII 1911 . A G 100 badReads;HapScore;MQ BRF=0.99;FR=0.1446;HP=1;HapScore=24;MGOF=1151;MMLQ=12;MQ=5.3;NF=6;NR=2;PP=100;QD=16.8464015684;SC=CGGTACTTTCAGTGGTAGTAG;SbPval=0.92;Source=Platypus;TC=68;TCF=25;TCR=43;TR=8;WE=1919;WS=1878 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-3.91,-10.93:82:39:3:0 ./.:0.0,-0.77,-7.19:8:8:1:0 ./.:0.0,-0.77,-6.83:0:8:1:0 ./.:0.0,-0.77,-9.56:0:8:1:0 ./.:-3.15,0.0,-0.77:113:8:1:1 ./.:0.0,-0.77,-9.13:0:8:1:0 0/0:0.0,-0.9,-11.04:0:10:2:0 ./.:0,0,0:0:0:0:0 ./.:-1.76,0.0,-0.77:0:8:1:1 ./.:0.0,-0.48,-1.55:12:6:1:1 0/0:0.0,-3.71,-14.78:35:37:3:0 ./.:-0.12,0.0,-3.27:286:4:2:0 ./.:0.0,-0.74,-2.63:190:8:1:0 0/0:0.0,-4.04,-23.46:32:40:5:0 1/0:-1.65,0.0,-4.78:58:17:3:1 0/0:0.0,-1.38,-10.48:44:14:3:0 0/0:0.0,-4.15,-13.73:40:41:2:0 ./.:0,0,0:0:0:0:0 1/0:-4.62,0.0,-9.49:33:46:3:2 0/0:0.0,-3.45,-17.8:90:34:5:0 0/0:0.0,-0.98,-6.32:63:10:2:0 ./.:0.0,-0.71,-2.37:54:8:0:0 ./.:0.0,-0.77,-4.95:46:8:1:0 0/0:0.0,-6.21,-30.99:37:62:7:1 ./.:-0.39,0.0,-1.02:1151:5:1:0 0/0:0.0,-1.62,-12.59:68:16:3:0 0/0:0.0,-1.22,-13.07:91:12:5:0 ./.:-0.08,0.0,-1.6:41:3:1:0 1/0:-4.26,0.0,-5.1:59:42:2:1 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.71,-2.37:0:8:0:0 ./.:0,0,0:0:0:0:0 0/0:0.0,-2.58,-10.21:49:26:2:0 0/0:0.0,-1.06,-7.8:103:11:2:0 ./.:0.0,-0.83,-4.49:323:9:1:0 0/0:0.0,-1.74,-7.9:52:17:2:0 chrXII 5430 . T C 34 badReads;MQ;QD BRF=0.74;FR=0.0102;HP=3;HapScore=1;MGOF=22;MMLQ=33;MQ=20.42;NF=33;NR=0;PP=34;QD=2.08397613779;SC=TGTATTACCCTGCCGAATAAG;SbPval=1.0;Source=Platypus;TC=6404;TCF=6404;TCR=0;TR=33;WE=5438;WS=5420 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-34.71,-300.0:15:99:128:2 0/0:0.0,-14.33,-151.97:2:99:45:0 0/0:0.0,-7.32,-67.57:4:73:19:0 0/0:0.0,-6.2,-53.07:2:62:16:0 0/0:0.0,-44.0,-300.0:15:99:142:0 0/0:0.0,-6.5,-61.87:0:65:16:0 1/0:-7.33,0.0,-53.71:2:73:22:4 0/0:0.0,-5.9,-55.97:2:59:15:0 0/0:0.0,-8.91,-89.37:5:89:24:0 0/0:0.0,-54.24,-300.0:15:99:190:1 0/0:0.0,-60.75,-300.0:14:99:210:2 0/0:0.0,-42.72,-300.0:22:99:151:1 0/0:0.0,-50.05,-300.0:15:99:162:0 0/0:0.0,-57.03,-300.0:19:99:202:2 0/0:0.0,-58.41,-300.0:14:99:215:2 0/0:0.0,-55.25,-300.0:16:99:187:2 0/0:0.0,-53.63,-300.0:16:99:187:1 0/0:0.0,-50.4,-300.0:15:99:163:0 0/0:0.0,-50.37,-300.0:12:99:177:1 0/0:0.0,-185.55,-300.0:14:99:636:3 0/0:0.0,-42.44,-300.0:13:99:154:2 0/0:0.0,-108.78,-300.0:12:99:363:1 0/0:0.0,-63.0,-300.0:15:99:206:0 0/0:0.0,-105.13,-300.0:12:99:346:0 0/0:0.0,-48.96,-300.0:16:99:158:0 0/0:0.0,-49.06,-300.0:12:99:158:0 0/0:0.0,-65.67,-300.0:13:99:216:0 0/0:0.0,-65.84,-300.0:16:99:223:1 0/0:0.0,-11.62,-119.47:7:99:33:0 0/0:0.0,-11.0,-115.77:10:99:31:0 0/0:0.0,-10.7,-111.27:8:99:30:0 0/0:0.0,-13.43,-138.07:6:99:39:0 0/0:0.0,-6.8,-63.47:11:68:17:0 0/0:0.0,-12.52,-138.07:3:99:36:0 0/0:0.0,-11.62,-126.07:3:99:33:0 0/0:0.0,-11.02,-123.67:7:99:36:1 0/0:0.0,-14.03,-149.37:4:99:42:0 0/0:0.0,-20.35,-211.57:9:99:62:0 0/0:0.0,-19.15,-213.77:2:99:58:0 0/0:0.0,-20.05,-217.17:11:99:61:0 0/0:0.0,-17.04,-183.67:6:99:51:0 0/0:0.0,-14.63,-160.67:6:99:43:0 0/0:0.0,-11.62,-117.07:5:99:33:0 0/0:0.0,-14.63,-156.57:1:99:43:0 0/0:0.0,-9.81,-94.27:4:98:27:0 0/0:0.0,-77.26,-300.0:19:99:263:2 0/0:0.0,-52.58,-300.0:13:99:184:1 0/0:0.0,-70.27,-300.0:14:99:239:2 0/0:0.0,-88.72,-300.0:13:99:312:2 chrXII 5699 . C CA 2986 SC;alleleBias BRF=0.49;FR=0.4899;HP=2;HapScore=1;MGOF=56;MMLQ=33;MQ=43.78;NF=1481;NR=300;PP=2986;QD=20;SC=CACACCCACACCCACACACAC;SbPval=1.0;Source=Platypus;TC=23409;TCF=12785;TCR=10624;TR=1781;WE=5738;WS=5642 GT:GL:GOF:GQ:NR:NV 1/0:-126.69,0.0,-300.0:29:99:588:36 1/0:-8.35,0.0,-300.0:18:84:149:15 0/0:0.0,-1.95,-300.0:12:20:99:4 1/0:-6.77,0.0,-300.0:22:68:64:7 1/0:-127.22,0.0,-300.0:22:99:681:31 1/0:-9.53,0.0,-293.85:26:95:63:6 1/0:-34.85,0.0,-300.0:28:99:130:22 1/0:-22.45,0.0,-300.0:23:99:88:15 1/0:-135.33,0.0,-300.0:45:99:175:36 1/0:-160.83,0.0,-300.0:37:99:662:41 1/0:-163.83,0.0,-300.0:43:99:823:43 1/0:-126.45,0.0,-300.0:31:99:507:33 1/0:-83.33,0.0,-300.0:38:99:509:28 1/0:-117.91,0.0,-300.0:35:99:556:30 1/0:-176.03,0.0,-300.0:33:99:693:52 1/0:-182.73,0.0,-300.0:33:99:684:44 1/0:-181.96,0.0,-300.0:40:99:697:51 1/0:-99.5,0.0,-300.0:48:99:534:30 1/0:-173.64,0.0,-300.0:36:99:788:44 1/0:-300.0,0.0,-300.0:39:99:1952:96 1/0:-110.0,0.0,-300.0:44:99:531:30 1/0:-289.91,0.0,-300.0:40:99:1390:87 1/0:-191.69,0.0,-300.0:41:99:781:57 1/0:-224.35,0.0,-300.0:41:99:1088:62 1/0:-115.25,0.0,-300.0:45:99:489:35 1/0:-169.66,0.0,-300.0:36:99:708:44 1/0:-195.47,0.0,-300.0:46:99:669:53 1/0:-184.97,0.0,-300.0:33:99:848:51 1/0:-48.02,0.0,-300.0:18:99:148:15 1/0:-57.63,0.0,-300.0:23:99:209:20 1/0:-85.46,0.0,-300.0:20:99:154:24 1/0:-56.4,0.0,-300.0:32:99:173:15 1/0:-43.34,0.0,-300.0:30:99:154:14 1/0:-107.44,0.0,-300.0:26:99:181:23 1/0:-90.33,0.0,-300.0:29:99:124:20 1/0:-59.44,0.0,-300.0:33:99:146:18 1/0:-76.77,0.0,-300.0:25:99:172:21 1/0:-120.39,0.0,-300.0:46:99:230:37 1/0:-136.07,0.0,-300.0:42:99:241:38 1/0:-185.3,0.0,-300.0:40:99:240:38 1/0:-129.59,0.0,-300.0:38:99:212:29 1/0:-79.64,0.0,-300.0:34:99:166:21 1/0:-80.5,0.0,-300.0:36:99:153:22 1/0:-78.53,0.0,-300.0:31:99:155:20 1/0:-67.39,0.0,-300.0:20:99:182:18 1/0:-175.04,0.0,-300.0:39:99:831:58 1/0:-282.35,0.0,-300.0:56:99:602:66 1/0:-272.84,0.0,-300.0:51:99:792:69 1/0:-300.0,0.0,-300.0:50:99:1198:112 chrXII 5706 . ACACCA CCACAC 2937 SC;alleleBias BRF=0.49;FR=0.4899;HP=2;HapScore=1;MGOF=56;MMLQ=37;MQ=45.45;NF=1086;NR=96;PP=2937;QD=20;SC=ACACCCACACACACCACACAC;SbPval=1.0;Source=Platypus;TC=24468;TCF=13388;TCR=11080;TR=1182;WE=5738;WS=5642 GT:GL:GOF:GQ:NR:NV 1/0:-300.0,0.0,-300.0:29:99:600:24 1/0:-35.31,0.0,-300.0:18:99:171:2 0/0:0.0,-1.95,-300.0:12:20:127:1 1/0:-11.86,0.0,-300.0:22:99:91:0 1/0:-283.41,0.0,-300.0:22:99:725:24 1/0:-19.89,0.0,-300.0:26:99:79:1 1/0:-132.16,0.0,-300.0:28:99:159:6 1/0:-33.58,0.0,-300.0:23:99:99:1 1/0:-300.0,0.0,-300.0:45:99:196:25 1/0:-300.0,0.0,-300.0:37:99:687:31 1/0:-300.0,0.0,-300.0:43:99:892:28 1/0:-300.0,0.0,-300.0:31:99:514:25 1/0:-205.38,0.0,-300.0:38:99:518:19 1/0:-296.68,0.0,-300.0:35:99:560:24 1/0:-300.0,0.0,-300.0:33:99:738:36 1/0:-300.0,0.0,-300.0:33:99:726:32 1/0:-300.0,0.0,-300.0:40:99:734:39 1/0:-240.32,0.0,-300.0:48:99:563:20 1/0:-300.0,0.0,-300.0:36:99:835:36 1/0:-300.0,0.0,-300.0:39:99:1983:67 1/0:-287.17,0.0,-300.0:44:99:549:24 1/0:-300.0,0.0,-300.0:40:99:1463:66 1/0:-300.0,0.0,-300.0:41:99:805:40 1/0:-300.0,0.0,-300.0:41:99:1135:39 1/0:-299.88,0.0,-300.0:45:99:504:22 1/0:-300.0,0.0,-300.0:36:99:762:33 1/0:-300.0,0.0,-300.0:46:99:680:40 1/0:-300.0,0.0,-300.0:33:99:857:38 1/0:-129.09,0.0,-300.0:18:99:156:4 1/0:-177.42,0.0,-300.0:23:99:220:9 1/0:-224.38,0.0,-300.0:20:99:164:16 1/0:-150.71,0.0,-300.0:32:99:183:7 1/0:-150.81,0.0,-300.0:30:99:168:7 1/0:-249.96,0.0,-300.0:26:99:196:9 1/0:-230.26,0.0,-300.0:29:99:134:16 1/0:-171.43,0.0,-300.0:33:99:149:12 1/0:-205.42,0.0,-300.0:25:99:171:11 1/0:-300.0,0.0,-300.0:46:99:234:20 1/0:-300.0,0.0,-300.0:42:99:249:18 1/0:-300.0,0.0,-300.0:40:99:254:24 1/0:-300.0,0.0,-300.0:38:99:223:17 1/0:-217.27,0.0,-300.0:34:99:171:10 1/0:-222.17,0.0,-300.0:36:99:152:9 1/0:-211.18,0.0,-300.0:31:99:165:13 1/0:-171.29,0.0,-300.0:20:99:197:12 1/0:-300.0,0.0,-300.0:39:99:858:40 1/0:-300.0,0.0,-300.0:56:99:614:54 1/0:-300.0,0.0,-300.0:51:99:822:49 1/0:-300.0,0.0,-300.0:50:99:1236:82 chrXII 5717 . CCA C 2971 alleleBias BRF=0.49;FR=0.4899;HP=2;HapScore=1;MGOF=56;MMLQ=27;MQ=48.31;NF=1326;NR=308;PP=2971;QD=20;SC=CACCACACACCCACACACTCT;SbPval=1.0;Source=Platypus;TC=23174;TCF=12204;TCR=10970;TR=1634;WE=5738;WS=5642 GT:GL:GOF:GQ:NR:NV 1/0:-76.92,0.0,-300.0:29:99:563:32 1/0:-35.31,0.0,-300.0:18:99:144:9 0/0:0.0,-1.95,-300.0:12:20:126:5 1/0:-11.86,0.0,-300.0:22:99:78:5 1/0:-72.64,0.0,-300.0:22:99:667:27 1/0:-19.89,0.0,-300.0:26:99:74:6 1/0:-94.04,0.0,-300.0:28:99:136:20 1/0:-33.58,0.0,-300.0:23:99:78:7 1/0:-113.24,0.0,-300.0:45:99:163:33 1/0:-74.24,0.0,-300.0:37:99:645:40 1/0:-54.59,0.0,-300.0:43:99:832:42 1/0:-36.02,0.0,-300.0:31:99:489:33 1/0:-35.54,0.0,-300.0:38:99:504:25 1/0:-65.22,0.0,-300.0:35:99:547:29 1/0:-89.19,0.0,-300.0:33:99:697:44 1/0:-78.56,0.0,-300.0:33:99:697:41 1/0:-89.48,0.0,-300.0:40:99:665:46 1/0:-42.71,0.0,-300.0:48:99:536:30 1/0:-89.11,0.0,-300.0:36:99:775:41 1/0:-157.75,0.0,-300.0:39:99:1863:83 1/0:-41.1,0.0,-300.0:44:99:518:29 1/0:-88.45,0.0,-300.0:40:99:1376:78 1/0:-121.24,0.0,-300.0:41:99:771:54 1/0:-99.56,0.0,-300.0:41:99:1088:57 1/0:-77.77,0.0,-300.0:45:99:475:29 1/0:-77.49,0.0,-300.0:36:99:722:45 1/0:-43.37,0.0,-300.0:46:99:649:49 1/0:-78.43,0.0,-300.0:33:99:822:46 1/0:-57.97,0.0,-300.0:18:99:152:12 1/0:-58.89,0.0,-300.0:23:99:223:15 1/0:-81.05,0.0,-300.0:20:99:160:21 1/0:-54.65,0.0,-300.0:32:99:181:15 1/0:-60.79,0.0,-300.0:30:99:158:13 1/0:-84.61,0.0,-300.0:26:99:183:22 1/0:-80.41,0.0,-300.0:29:99:136:20 1/0:-46.0,0.0,-300.0:33:99:152:15 1/0:-67.73,0.0,-300.0:25:99:168:18 1/0:-79.85,0.0,-300.0:46:99:238:32 1/0:-101.18,0.0,-300.0:42:99:232:36 1/0:-151.62,0.0,-300.0:40:99:256:36 1/0:-108.37,0.0,-300.0:38:99:208:27 1/0:-94.63,0.0,-300.0:34:99:151:22 1/0:-87.92,0.0,-300.0:36:99:148:20 1/0:-102.28,0.0,-300.0:31:99:173:24 1/0:-54.35,0.0,-300.0:20:99:190:17 1/0:-84.87,0.0,-300.0:39:99:814:53 1/0:-114.83,0.0,-300.0:56:99:584:64 1/0:-68.15,0.0,-300.0:51:99:777:62 1/0:-148.92,0.0,-300.0:50:99:1190:105 chrXII 5741 . T C 2965 alleleBias BRF=0.44;FR=0.5000;HP=2;HapScore=1;MGOF=59;MMLQ=28;MQ=50.21;NF=1464;NR=667;PP=2965;QD=20;SC=ACATCTACCTTTACTCTCGCT;SbPval=0.98;Source=Platypus;TC=23343;TCF=12425;TCR=10918;TR=2131;WE=5770;WS=5731 GT:GL:GOF:GQ:NR:NV 1/0:-53.99,0.0,-300.0:27:99:566:32 1/0:-146.82,0.0,-300.0:10:99:156:29 1/0:-65.75,0.0,-300.0:8:99:147:18 1/0:-109.7,0.0,-271.94:9:99:88:21 1/0:-33.29,0.0,-300.0:22:99:646:31 1/0:-158.94,0.0,-263.72:14:99:90:29 1/0:-240.4,0.0,-300.0:18:99:149:44 1/0:-98.06,0.0,-298.86:12:99:99:22 1/0:-247.48,0.0,-300.0:36:99:183:43 1/0:-136.24,0.0,-300.0:41:99:633:51 1/0:-44.3,0.0,-300.0:44:99:828:54 1/0:-82.75,0.0,-300.0:34:99:498:39 1/0:-21.58,0.0,-300.0:36:99:475:28 1/0:-71.36,0.0,-300.0:37:99:515:36 1/0:-163.65,0.0,-300.0:36:99:719:61 1/0:-129.68,0.0,-300.0:37:99:696:52 1/0:-175.15,0.0,-300.0:41:99:661:58 1/0:-78.58,0.0,-300.0:43:99:544:42 1/0:-156.98,0.0,-300.0:39:99:808:58 1/0:-262.26,0.0,-300.0:37:99:1857:125 1/0:-67.46,0.0,-300.0:40:99:507:32 1/0:-237.44,0.0,-300.0:39:99:1341:112 1/0:-207.07,0.0,-300.0:46:99:760:61 1/0:-125.37,0.0,-300.0:37:99:1096:71 1/0:-91.59,0.0,-300.0:42:99:486:35 1/0:-150.95,0.0,-300.0:40:99:758:50 1/0:-179.41,0.0,-300.0:46:99:659:55 1/0:-112.06,0.0,-300.0:34:99:841:62 1/0:-45.93,0.0,-300.0:20:99:157:16 1/0:-55.44,0.0,-300.0:24:99:240:21 1/0:-110.92,0.0,-300.0:29:99:161:23 1/0:-43.66,0.0,-300.0:23:99:173:18 1/0:-66.73,0.0,-300.0:23:99:170:17 1/0:-127.24,0.0,-300.0:29:99:183:27 1/0:-117.15,0.0,-300.0:32:99:130:22 1/0:-75.36,0.0,-300.0:31:99:157:21 1/0:-77.87,0.0,-300.0:33:99:172:23 1/0:-183.61,0.0,-300.0:36:99:242:41 1/0:-213.1,0.0,-300.0:42:99:226:40 1/0:-287.28,0.0,-300.0:43:99:261:50 1/0:-177.07,0.0,-300.0:34:99:200:35 1/0:-141.72,0.0,-300.0:35:99:153:28 1/0:-141.16,0.0,-300.0:38:99:155:27 1/0:-78.29,0.0,-300.0:27:99:188:21 1/0:-56.16,0.0,-300.0:21:99:214:19 1/0:-185.61,0.0,-300.0:41:99:811:56 1/0:-300.0,0.0,-300.0:59:99:579:70 1/0:-285.46,0.0,-300.0:53:99:781:81 1/0:-300.0,0.0,-300.0:54:99:1184:124 chrXII 5757 . A T 2965 alleleBias BRF=0.44;FR=0.5000;HP=3;HapScore=1;MGOF=59;MMLQ=32;MQ=50.7;NF=1304;NR=504;PP=2965;QD=20;SC=TCGCTGTCACACCTTACCCGG;SbPval=1.0;Source=Platypus;TC=23130;TCF=12308;TCR=10822;TR=1808;WE=5770;WS=5731 GT:GL:GOF:GQ:NR:NV 1/0:-53.99,0.0,-300.0:27:99:569:29 1/0:-146.82,0.0,-300.0:10:99:165:27 1/0:-65.75,0.0,-300.0:8:99:147:16 1/0:-109.7,0.0,-297.32:9:99:92:21 1/0:-33.29,0.0,-300.0:22:99:641:29 1/0:-158.86,0.0,-296.61:14:99:94:29 1/0:-221.21,0.0,-300.0:18:99:153:44 1/0:-98.06,0.0,-300.0:12:99:105:20 1/0:-212.6,0.0,-300.0:36:99:191:43 1/0:-136.24,0.0,-300.0:41:99:611:40 1/0:-44.3,0.0,-300.0:44:99:800:38 1/0:-82.75,0.0,-300.0:34:99:508:32 1/0:-21.58,0.0,-300.0:36:99:482:25 1/0:-71.36,0.0,-300.0:37:99:527:27 1/0:-163.65,0.0,-300.0:36:99:700:52 1/0:-129.68,0.0,-300.0:37:99:682:36 1/0:-175.15,0.0,-300.0:41:99:645:48 1/0:-78.58,0.0,-300.0:43:99:549:28 1/0:-156.98,0.0,-300.0:39:99:798:46 1/0:-262.26,0.0,-300.0:37:99:1831:98 1/0:-67.46,0.0,-300.0:40:99:503:27 1/0:-237.44,0.0,-300.0:39:99:1304:83 1/0:-207.07,0.0,-300.0:46:99:745:52 1/0:-125.37,0.0,-300.0:37:99:1072:52 1/0:-91.59,0.0,-300.0:42:99:467:32 1/0:-150.95,0.0,-300.0:40:99:732:40 1/0:-179.41,0.0,-300.0:46:99:631:50 1/0:-112.06,0.0,-300.0:34:99:814:48 1/0:-45.93,0.0,-300.0:20:99:163:17 1/0:-55.44,0.0,-300.0:24:99:249:21 1/0:-110.92,0.0,-300.0:29:99:165:23 1/0:-43.66,0.0,-300.0:23:99:173:14 1/0:-66.73,0.0,-300.0:23:99:171:16 1/0:-127.24,0.0,-300.0:29:99:200:24 1/0:-117.15,0.0,-300.0:32:99:136:22 1/0:-75.36,0.0,-300.0:31:99:170:19 1/0:-77.87,0.0,-300.0:33:99:175:17 1/0:-172.21,0.0,-300.0:36:99:243:37 1/0:-187.58,0.0,-300.0:42:99:222:38 1/0:-247.09,0.0,-300.0:43:99:268:50 1/0:-169.73,0.0,-300.0:34:99:195:31 1/0:-141.72,0.0,-300.0:35:99:157:26 1/0:-141.16,0.0,-300.0:38:99:165:24 1/0:-78.29,0.0,-300.0:27:99:202:20 1/0:-56.16,0.0,-300.0:21:99:223:18 1/0:-185.61,0.0,-300.0:41:99:785:48 1/0:-263.45,0.0,-300.0:59:99:562:60 1/0:-263.44,0.0,-300.0:53:99:783:69 1/0:-300.0,0.0,-300.0:54:99:1165:102 chrXII 5807 . CT GC 2947 alleleBias BRF=0.38;FR=0.1837;HP=3;HapScore=1;MGOF=43;MMLQ=27;MQ=57.11;NF=493;NR=296;PP=2947;QD=20;SC=ATGAAACCCTCTTCTTTAGCC;SbPval=0.68;Source=Platypus;TC=24160;TCF=12236;TCR=11924;TR=789;WE=5816;WS=5797 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-70.77,-300.0:23:99:580:13 0/1:-38.7,0.0,-300.0:12:99:157:11 0/1:-13.51,0.0,-300.0:7:99:139:8 0/1:-15.67,0.0,-300.0:10:99:79:6 0/0:0.0,-80.08,-300.0:19:99:728:16 0/1:-35.85,0.0,-300.0:15:99:98:10 0/1:-37.93,0.0,-300.0:11:99:119:11 0/1:-17.85,0.0,-300.0:10:99:97:6 0/1:-6.37,0.0,-300.0:13:64:183:10 0/0:0.0,-52.92,-300.0:28:99:638:18 0/0:0.0,-115.46,-300.0:28:99:862:20 0/0:0.0,-69.9,-300.0:29:99:571:14 0/0:0.0,-85.59,-300.0:28:99:502:9 0/0:0.0,-43.94,-300.0:31:99:562:18 0/1:-16.35,0.0,-300.0:33:99:743:32 0/0:0.0,-116.94,-300.0:31:99:766:14 0/0:0.0,-37.17,-300.0:34:99:693:24 0/0:0.0,-71.19,-300.0:28:99:553:13 0/0:0.0,-64.3,-300.0:29:99:917:26 0/0:0.0,-234.09,-300.0:28:99:2052:51 0/0:0.0,-40.98,-300.0:30:99:516:16 0/0:0.0,-74.34,-300.0:30:99:1331:47 0/0:0.0,-13.74,-300.0:34:99:813:31 0/0:0.0,-133.32,-300.0:27:99:1093:29 0/0:0.0,-35.35,-300.0:35:99:494:17 0/0:0.0,-79.51,-300.0:30:99:765:19 0/0:0.0,-46.39,-300.0:34:99:655:24 0/0:0.0,-131.4,-300.0:29:99:886:20 0/1:-13.4,0.0,-300.0:15:99:167:8 0/0:0.0,-11.35,-300.0:14:99:243:8 0/0:0.0,-4.8,-300.0:16:48:148:5 0/0:0.0,-21.03,-300.0:10:99:179:5 0/0:0.0,-9.82,-300.0:11:98:172:6 0/1:-25.76,0.0,-300.0:18:99:187:10 0/0:0.0,-2.37,-300.0:15:24:133:3 0/0:0.0,-6.58,-300.0:11:66:179:6 0/0:0.0,-22.07,-300.0:13:99:171:3 0/1:-2.25,0.0,-300.0:13:23:216:7 0/1:-51.77,0.0,-300.0:20:99:190:14 0/1:-34.21,0.0,-300.0:19:99:240:13 0/0:0.0,-16.57,-300.0:17:99:168:4 0/1:-42.81,0.0,-300.0:20:99:141:12 0/1:-38.39,0.0,-300.0:21:99:137:9 0/0:0.0,-5.14,-300.0:16:51:193:6 0/0:0.0,-32.56,-300.0:13:99:217:4 0/0:0.0,-82.08,-300.0:34:99:827:18 0/1:-28.21,0.0,-300.0:43:99:562:26 0/1:-6.4,0.0,-300.0:35:64:845:35 0/1:-39.22,0.0,-300.0:40:99:1253:54 chrXII 7567 . CTAGTCCTGA TTAGTGCTGG 15 Q20;badReads;MQ;QD;alleleBias BRF=0.97;FR=0.0548;HP=1;HapScore=2;MGOF=36;MMLQ=27;MQ=3.73;NF=10;NR=0;PP=15;QD=7.84678748622;SC=GGTAGTAGCACTAGTCCTGAC;SbPval=1.0;Source=Platypus;TC=514;TCF=365;TCR=149;TR=10;WE=7584;WS=7557 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-4.48,-87.2:36:45:12:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 0/0:0.0,-3.01,-45.2:8:30:7:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-1.24,-10.24:29:13:1:0 0/0:0.0,-4.39,-108.3:14:44:17:0 0/0:0.0,-8.31,-116.1:20:83:25:0 0/0:0.0,-1.59,-82.71:19:16:18:1 0/1:-6.32,0.0,-74.61:21:63:18:2 0/0:0.0,-4.85,-106.2:7:49:16:0 0/0:0.0,-5.65,-76.2:9:57:17:0 0/0:0.0,-5.12,-82.71:5:51:14:0 0/0:0.0,-2.41,-79.81:16:24:18:1 0/0:0.0,-0.82,-59.21:15:9:12:1 0/0:0.0,-6.92,-139.9:20:69:20:0 0/0:0.0,-12.8,-280.3:13:99:61:1 0/0:0.0,-3.26,-42.31:19:33:8:0 0/1:-0.3,0.0,-149.48:8:5:23:1 0/0:0.0,-6.36,-129.1:6:64:22:0 0/0:0.0,-10.12,-150.3:13:99:33:0 0/1:-2.04,0.0,-45.19:7:20:10:1 0/0:0.0,-6.1,-86.15:16:61:18:0 0/1:-0.38,0.0,-67.61:17:5:11:1 0/0:0.0,-7.52,-136.8:7:75:22:0 0/0:0.0,-1.53,-15.23:7:15:2:0 0/0:0.0,-2.11,-41.4:0:21:4:0 0/0:0.0,-1.52,-16.62:9:15:2:0 ./.:0.0,-0.94,-2.47:0:10:0:0 0/0:0.0,-1.52,-25.22:0:15:2:0 ./.:0.0,-1.24,-8.94:0:13:1:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-1.24,-9.55:7:13:1:0 0/0:0.0,-1.52,-22.22:6:15:2:0 ./.:0.0,-1.24,-13.74:0:13:1:0 ./.:0.0,-1.24,-13.84:0:13:1:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-1.24,-10.84:0:13:1:0 ./.:0.0,-1.24,-13.14:0:13:1:0 0/0:0.0,-6.59,-106.0:8:66:19:0 0/0:0.0,-6.78,-126.9:5:68:20:0 0/0:0.0,-7.19,-92.18:14:72:21:0 0/0:0.0,-1.57,-159.66:11:16:33:1 chrXII 7609 . C T 161 badReads;MQ;strandBias;alleleBias BRF=1.0;FR=0.2173;HP=1;HapScore=2;MGOF=90;MMLQ=37;MQ=1.39;NF=11;NR=0;PP=161;QD=17.7973829588;SC=AGCATTAGTGCTGGAGTTGGT;SbPval=0.0;Source=Platypus;TC=101;TCF=23;TCR=78;TR=11;WE=7617;WS=7599 GT:GL:GOF:GQ:NR:NV 0/1:-2.94,0.0,-6.85:35:29:4:1 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.56,-5.21:0:7:1:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 0/0:0.0,-2.34,-25.51:34:23:7:0 0/0:0.0,-1.16,-11.61:52:12:3:0 0/0:0.0,-0.79,-6.01:42:9:2:0 0/1:-2.72,0.0,-15.13:67:27:8:2 ./.:0.0,-0.26,-1.11:0:4:0:0 0/1:-0.74,0.0,-11.15:35:8:4:1 ./.:-1.64,0.0,-0.56:46:6:1:1 0/0:0.0,-1.13,-10.51:78:12:3:0 0/0:0.0,-0.86,-8.41:90:9:3:0 0/0:0.0,-2.06,-25.31:22:21:6:0 0/1:-5.34,0.0,-12.15:29:53:8:2 ./.:-3.54,0.0,-0.56:12:7:1:1 0/1:-0.74,0.0,-11.55:47:8:4:1 ./.:0.0,-0.56,-4.81:18:7:1:0 0/0:0.0,-2.04,-21.91:49:20:6:0 0/1:-1.17,0.0,-12.88:26:12:5:0 ./.:0.0,-0.56,-4.31:52:7:1:0 0/1:-1.44,0.0,-11.55:44:15:4:0 0/1:-1.64,0.0,-18.65:0:16:6:1 0/0:0.0,-0.86,-6.41:7:9:2:0 ./.:0.0,-0.56,-4.21:0:7:1:0 ./.:0.0,-0.56,-4.31:29:7:1:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.56,-4.51:0:7:1:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.56,-2.61:15:7:1:0 0/0:0.0,-0.86,-8.51:6:9:2:0 ./.:0.0,-0.26,-1.11:0:4:0:0 ./.:0.0,-0.26,-1.11:0:4:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.56,-4.81:0:7:1:0 ./.:0.0,-0.56,-4.91:0:7:1:0 ./.:0.0,-0.56,-5.21:12:7:1:0 0/0:0.0,-1.46,-15.61:25:15:4:0 0/1:-2.64,0.0,-7.25:81:26:4:1 0/0:0.0,-1.41,-10.81:71:14:4:0 chrXII 7648 . A G 13 Q20;badReads;MQ;QD BRF=0.96;FR=0.0379;HP=1;HapScore=1;MGOF=26;MMLQ=8;MQ=4.07;NF=0;NR=122;PP=13;QD=0.391567315961;SC=ACTAGTCCTGACGTTGATGCT;SbPval=1.0;Source=Platypus;TC=925;TCF=11;TCR=914;TR=122;WE=7656;WS=7638 GT:GL:GOF:GQ:NR:NV 0/1:-3.48,0.0,-15.49:18:35:12:3 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 0/0:0.0,-2.53,-25.81:17:25:10:1 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-1.1,-2.81:0:11:0:0 0/0:0.0,-5.34,-60.11:14:53:28:4 0/0:0.0,-1.19,-49.61:8:12:28:6 0/0:0.0,-5.69,-43.41:11:57:21:1 0/0:0.0,-4.8,-57.41:16:48:35:4 0/0:0.0,-5.3,-70.01:12:53:45:8 0/0:0.0,-6.73,-54.91:7:67:23:1 0/0:0.0,-6.63,-68.01:9:66:34:4 0/0:0.0,-7.2,-56.71:9:72:27:1 0/0:0.0,-4.6,-41.21:7:46:19:2 0/0:0.0,-9.65,-94.31:10:97:43:3 0/0:0.0,-18.42,-209.91:9:99:119:12 0/0:0.0,-4.05,-46.51:15:41:27:4 0/0:0.0,-5.84,-87.11:12:58:51:8 0/0:0.0,-7.29,-72.81:8:73:42:6 0/0:0.0,-4.44,-86.91:18:44:57:11 0/0:0.0,-7.42,-50.61:12:74:26:1 0/0:0.0,-5.66,-63.01:18:57:27:3 0/0:0.0,-3.58,-56.41:22:36:35:8 0/0:0.0,-7.29,-94.21:17:73:49:7 ./.:0.0,-1.41,-6.51:15:14:1:0 ./.:0.0,-1.41,-6.61:0:14:1:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-1.1,-2.81:0:11:0:0 ./.:0.0,-1.1,-2.81:0:11:0:0 ./.:0.0,-1.1,-2.81:0:11:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-1.41,-5.61:15:14:1:0 ./.:0.0,-1.41,-6.11:2:14:1:0 ./.:0.0,-1.1,-2.81:0:11:0:0 ./.:0.0,-1.1,-2.81:0:11:0:0 ./.:0.0,-1.1,-2.81:0:11:0:0 ./.:0.0,-1.1,-2.81:0:11:0:0 ./.:0.0,-1.41,-6.61:0:14:1:0 ./.:0.0,-1.1,-2.81:0:11:0:0 0/1:-2.19,0.0,-49.8:9:22:37:11 0/0:0.0,-8.98,-79.81:6:90:33:2 0/0:0.0,-8.1,-67.91:26:81:36:2 0/0:0.0,-3.66,-100.01:12:37:56:9 chrXII 10965 . 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AC A 2709 SC;badReads;MQ BRF=0.74;FR=0.0977;HP=4;HapScore=1;MGOF=176;MMLQ=14;MQ=30.6;NF=3884;NR=3431;PP=2709;QD=20;SC=ACACCCACACACCCACACCCA;SbPval=0.69;Source=Platypus;TC=18384;TCF=8783;TCR=9601;TR=7315;WE=11367;WS=11177 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-94.24,-300.0:89:99:504:190 0/0:0.0,-10.36,-201.03:16:99:53:13 0/0:0.0,-14.22,-171.3:11:99:37:5 ./.:-0.12,0.0,-77.69:20:4:21:4 0/0:0.0,-87.3,-300.0:78:99:482:172 1/0:-8.0,0.0,-124.41:25:80:32:8 0/0:0.0,-7.52,-163.64:26:75:41:12 0/0:0.0,-9.28,-128.42:24:93:30:5 0/0:0.0,-25.84,-300.0:83:99:96:40 0/0:0.0,-48.84,-300.0:82:99:522:214 0/0:0.0,-67.19,-300.0:90:99:736:304 0/0:0.0,-43.47,-300.0:91:99:398:170 0/1:-9.22,0.0,-300.0:83:92:450:174 0/0:0.0,-110.32,-300.0:83:99:516:199 0/0:0.0,-80.16,-299.98:89:99:546:236 0/0:0.0,-124.01,-300.0:91:99:571:222 0/0:0.0,-53.21,-300.0:89:99:544:232 0/0:0.0,-28.68,-300.0:96:99:468:182 0/0:0.0,-101.25,-300.0:80:99:670:244 0/0:0.0,-261.75,-300.0:79:99:1679:680 0/0:0.0,-2.66,-300.0:84:27:441:184 0/0:0.0,-77.96,-300.0:97:99:1041:401 0/0:0.0,-65.8,-299.99:100:99:599:248 0/0:0.0,-80.42,-300.0:97:99:958:395 0/0:0.0,-42.87,-300.0:91:99:373:151 0/0:0.0,-85.69,-300.0:95:99:569:230 0/0:0.0,-51.62,-300.0:93:99:508:208 0/0:0.0,-144.1,-300.0:97:99:761:325 0/0:0.0,-24.79,-257.03:90:99:75:28 0/0:0.0,-25.25,-300.0:70:99:124:42 1/0:-57.41,0.0,-299.68:93:99:95:32 1/0:-7.75,0.0,-300.0:144:78:117:47 0/0:0.0,-10.98,-300.0:109:99:112:46 1/0:-93.45,0.0,-299.05:176:99:112:50 0/0:0.0,-12.78,-300.0:121:99:102:38 0/0:0.0,-9.0,-300.0:92:90:92:43 1/0:-28.95,0.0,-299.68:105:99:106:35 0/0:0.0,-7.53,-300.0:139:75:146:43 1/0:-23.66,0.0,-299.68:146:99:124:40 1/0:-24.43,0.0,-300.0:120:99:151:50 0/0:0.0,-14.87,-300.0:155:99:101:30 0/1:-24.5,0.0,-300.0:107:99:92:33 0/0:0.0,-17.02,-300.0:128:99:91:33 0/0:0.0,-10.81,-300.0:82:99:112:42 0/0:0.0,-13.39,-300.0:65:99:120:32 0/0:0.0,-36.79,-300.0:85:99:694:293 0/0:0.0,-118.19,-300.0:107:99:482:196 0/0:0.0,-73.96,-300.0:117:99:692:295 0/0:0.0,-106.68,-300.0:109:99:998:419 chrXII 11310 . 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G T 864 alleleBias BRF=0.02;FR=0.0102;HP=1;HapScore=1;MGOF=15;MMLQ=36;MQ=59.99;NF=35;NR=28;PP=864;QD=14.266209723;SC=TCCGCATCAGGTCTTCGGAAA;SbPval=0.78;Source=Platypus;TC=22709;TCF=11218;TCR=11491;TR=63;WE=26408;WS=26390 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-161.98,-300.0:6:99:544:0 0/0:0.0,-67.61,-300.0:1:99:225:0 0/0:0.0,-44.13,-300.0:0:99:143:0 0/0:0.0,-33.52,-300.0:1:99:111:0 0/0:0.0,-161.79,-300.0:7:99:546:0 0/0:0.0,-35.96,-300.0:1:99:116:0 0/0:0.0,-48.65,-300.0:1:99:156:0 0/0:0.0,-34.46,-300.0:0:99:111:0 0/0:0.0,-64.6,-300.0:1:99:206:0 0/0:0.0,-179.17,-300.0:10:99:602:0 0/0:0.0,-216.92,-300.0:10:99:751:0 0/0:0.0,-153.67,-300.0:13:99:519:0 0/0:0.0,-160.18,-300.0:10:99:536:0 0/0:0.0,-173.27,-300.0:10:99:593:2 0/0:0.0,-178.29,-300.0:12:99:605:0 0/0:0.0,-206.28,-300.0:11:99:685:0 0/0:0.0,-196.5,-300.0:12:99:661:0 0/0:0.0,-171.45,-300.0:9:99:583:1 0/0:0.0,-208.99,-300.0:9:99:721:1 0/0:0.0,-300.0,-300.0:11:99:2008:4 0/0:0.0,-155.53,-300.0:9:99:535:0 0/0:0.0,-300.0,-300.0:10:99:1205:1 0/0:0.0,-217.71,-300.0:13:99:739:3 0/0:0.0,-300.0,-300.0:11:99:1112:0 0/0:0.0,-136.43,-300.0:15:99:453:1 0/0:0.0,-204.76,-300.0:9:99:718:2 0/0:0.0,-182.67,-300.0:11:99:611:1 0/0:0.0,-239.95,-300.0:10:99:791:0 0/0:0.0,-48.95,-300.0:3:99:163:0 0/0:0.0,-71.52,-300.0:1:99:249:0 0/0:0.0,-43.53,-300.0:2:99:139:0 0/0:0.0,-59.18,-300.0:2:99:194:0 0/0:0.0,-51.96,-300.0:2:99:170:0 0/0:0.0,-51.36,-300.0:2:99:167:0 0/0:0.0,-42.02,-300.0:2:99:135:0 0/0:0.0,-55.25,-300.0:2:99:181:0 0/0:0.0,-45.61,-300.0:3:99:148:0 0/0:0.0,-67.61,-300.0:2:99:220:0 0/1:-90.28,0.0,-300.0:1:99:229:42 0/0:0.0,-59.16,-300.0:4:99:193:0 0/0:0.0,-53.44,-300.0:2:99:172:0 0/0:0.0,-54.06,-300.0:2:99:174:0 0/0:0.0,-53.16,-300.0:6:99:170:0 0/0:0.0,-56.17,-300.0:5:99:189:0 0/0:0.0,-60.39,-300.0:2:99:205:0 0/0:0.0,-215.58,-300.0:11:99:736:3 0/0:0.0,-148.48,-300.0:11:99:496:0 0/0:0.0,-220.09,-300.0:12:99:744:2 0/0:0.0,-300.0,-300.0:11:99:1049:0 chrXII 29730 . GTGGCTTC G 794 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=2;HapScore=1;MGOF=19;MMLQ=12;MQ=59.97;NF=83;NR=84;PP=794;QD=4.94011976048;SC=ACAAAAATGTGTGGCTTCTGA;SbPval=1.0;Source=Platypus;TC=22147;TCF=10886;TCR=11261;TR=167;WE=29763;WS=29718 GT:GL:GOF:GQ:NR:NV 1/0:-24.77,0.0,-300.0:19:99:445:2 0/0:0.0,-69.11,-300.0:1:99:228:4 0/0:0.0,-52.25,-300.0:1:99:169:2 0/0:0.0,-28.47,-300.0:2:99:92:1 1/0:-58.61,0.0,-300.0:19:99:449:10 0/0:0.0,-33.98,-300.0:3:99:114:2 0/0:0.0,-45.64,-300.0:2:99:156:1 0/0:0.0,-32.69,-300.0:2:99:106:0 0/0:0.0,-59.18,-300.0:6:99:185:2 0/0:0.0,-175.48,-300.0:14:99:579:5 0/0:0.0,-224.69,-300.0:14:99:745:4 0/0:0.0,-138.2,-300.0:15:99:453:6 0/0:0.0,-168.1,-300.0:16:99:555:4 0/0:0.0,-170.83,-300.0:15:99:573:3 0/0:0.0,-182.58,-300.0:14:99:598:0 0/0:0.0,-205.32,-300.0:15:99:703:3 0/0:0.0,-194.84,-300.0:14:99:667:1 0/0:0.0,-162.02,-300.0:17:99:529:1 0/0:0.0,-221.68,-300.0:15:99:727:8 0/0:0.0,-300.0,-300.0:15:99:1986:7 0/0:0.0,-164.76,-300.0:15:99:551:5 0/0:0.0,-300.0,-300.0:13:99:1166:5 0/0:0.0,-201.22,-300.0:18:99:656:6 0/0:0.0,-297.54,-300.0:15:99:980:4 0/0:0.0,-138.83,-300.0:19:99:463:5 0/0:0.0,-206.96,-300.0:14:99:684:3 0/0:0.0,-182.19,-300.0:18:99:598:6 0/0:0.0,-240.34,-300.0:14:99:793:4 0/0:0.0,-57.37,-300.0:6:99:191:1 0/0:0.0,-58.55,-300.0:5:99:194:2 0/0:0.0,-45.93,-300.0:4:99:151:3 0/0:0.0,-58.58,-300.0:6:99:191:3 0/0:0.0,-54.66,-300.0:5:99:179:3 0/0:0.0,-53.76,-300.0:6:99:177:3 0/0:0.0,-43.31,-300.0:6:99:142:3 0/0:0.0,-58.58,-300.0:7:99:194:2 0/0:0.0,-58.48,-300.0:8:99:198:1 0/0:0.0,-70.02,-300.0:6:99:230:5 0/0:0.0,-76.64,-300.0:5:99:256:3 0/0:0.0,-66.4,-300.0:7:99:219:5 0/0:0.0,-61.59,-300.0:6:99:208:4 0/0:0.0,-51.35,-300.0:10:99:167:1 0/0:0.0,-48.64,-300.0:5:99:161:2 0/0:0.0,-61.17,-300.0:5:99:202:1 0/0:0.0,-51.35,-300.0:6:99:164:6 0/0:0.0,-214.44,-300.0:16:99:742:4 0/0:0.0,-143.77,-300.0:15:99:478:2 0/0:0.0,-214.46,-300.0:19:99:708:3 0/0:0.0,-300.0,-300.0:17:99:1045:6 chrXII 29739 . G GAAAAAAA 813 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=10;HapScore=1;MGOF=19;MMLQ=12;MQ=59.97;NF=83;NR=86;PP=813;QD=4.88165680473;SC=TGTGGCTTCTGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=22552;TCF=11185;TCR=11367;TR=169;WE=29763;WS=29718 GT:GL:GOF:GQ:NR:NV 1/0:-24.77,0.0,-300.0:19:99:460:2 0/0:0.0,-69.11,-300.0:1:99:225:5 0/0:0.0,-52.25,-300.0:2:99:167:2 0/0:0.0,-28.47,-295.77:2:99:91:1 1/0:-58.61,0.0,-300.0:19:99:467:10 0/0:0.0,-33.98,-300.0:3:99:104:2 0/0:0.0,-45.64,-300.0:2:99:154:1 0/0:0.0,-32.69,-298.27:2:99:100:0 0/0:0.0,-59.18,-300.0:6:99:195:2 0/0:0.0,-175.48,-300.0:14:99:595:5 0/0:0.0,-224.69,-300.0:14:99:753:4 0/0:0.0,-138.2,-300.0:15:99:446:6 0/0:0.0,-168.1,-300.0:16:99:569:4 0/0:0.0,-170.83,-300.0:15:99:568:3 0/0:0.0,-182.58,-300.0:14:99:611:1 0/0:0.0,-205.32,-300.0:15:99:724:3 0/0:0.0,-194.84,-300.0:14:99:672:1 0/0:0.0,-162.02,-300.0:17:99:548:1 0/0:0.0,-221.68,-300.0:15:99:743:8 0/0:0.0,-300.0,-300.0:15:99:2045:7 0/0:0.0,-164.76,-300.0:15:99:553:5 0/0:0.0,-300.0,-300.0:13:99:1197:5 0/0:0.0,-201.22,-300.0:18:99:677:6 0/0:0.0,-297.54,-300.0:15:99:1024:4 0/0:0.0,-138.83,-300.0:19:99:468:5 0/0:0.0,-206.96,-300.0:14:99:699:2 0/0:0.0,-182.19,-300.0:18:99:621:6 0/0:0.0,-240.34,-300.0:14:99:829:4 0/0:0.0,-57.37,-300.0:6:99:196:1 0/0:0.0,-58.55,-300.0:5:99:183:2 0/0:0.0,-45.93,-300.0:4:99:150:3 0/0:0.0,-58.58,-300.0:6:99:188:4 0/0:0.0,-54.66,-300.0:5:99:174:3 0/0:0.0,-53.76,-300.0:6:99:181:3 0/0:0.0,-43.31,-300.0:6:99:135:3 0/0:0.0,-58.58,-300.0:7:99:193:2 0/0:0.0,-58.48,-300.0:8:99:190:1 0/0:0.0,-70.02,-300.0:6:99:244:5 0/0:0.0,-76.64,-300.0:5:99:255:3 0/0:0.0,-66.4,-300.0:7:99:229:4 0/0:0.0,-61.59,-300.0:6:99:204:5 0/0:0.0,-51.35,-300.0:10:99:169:1 0/0:0.0,-48.64,-300.0:6:99:155:2 0/0:0.0,-61.17,-300.0:5:99:198:1 0/0:0.0,-51.35,-300.0:6:99:165:6 0/0:0.0,-214.44,-300.0:16:99:743:4 0/0:0.0,-143.77,-300.0:15:99:486:2 0/0:0.0,-214.46,-300.0:19:99:745:3 0/0:0.0,-300.0,-300.0:17:99:1064:6 chrXII 35378 . C A 2672 alleleBias BRF=0.02;FR=0.0204;HP=15;HapScore=1;MGOF=31;MMLQ=27;MQ=59.94;NF=43;NR=1194;PP=2672;QD=20;SC=GAGATAAAAACAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=23420;TCF=9979;TCR=13441;TR=1237;WE=35397;WS=35357 GT:GL:GOF:GQ:NR:NV 1/0:-146.81,0.0,-300.0:30:99:452:101 0/0:0.0,-61.32,-300.0:1:99:215:1 0/0:0.0,-36.41,-300.0:1:99:137:3 0/0:0.0,-31.08,-276.16:2:99:101:0 1/0:-124.72,0.0,-300.0:31:99:529:108 0/0:0.0,-25.85,-229.76:1:99:92:4 0/0:0.0,-43.9,-300.0:1:99:154:2 0/0:0.0,-33.84,-300.0:2:99:126:2 0/0:0.0,-51.66,-300.0:13:99:215:9 0/0:0.0,-125.27,-300.0:20:99:636:31 0/0:0.0,-170.29,-300.0:23:99:790:34 0/0:0.0,-114.96,-300.0:24:99:483:17 0/0:0.0,-123.28,-300.0:23:99:575:27 0/0:0.0,-140.13,-300.0:23:99:631:30 0/0:0.0,-129.55,-300.0:22:99:633:29 0/0:0.0,-157.75,-300.0:21:99:705:35 0/0:0.0,-150.38,-300.0:23:99:672:30 0/0:0.0,-120.91,-300.0:19:99:533:24 0/0:0.0,-176.1,-300.0:19:99:793:36 0/0:0.0,-300.0,-300.0:24:99:2109:98 0/0:0.0,-108.23,-300.0:20:99:561:31 0/0:0.0,-275.12,-300.0:23:99:1228:48 0/0:0.0,-165.54,-300.0:23:99:773:35 0/0:0.0,-240.05,-300.0:20:99:1083:52 0/0:0.0,-119.01,-300.0:24:99:457:9 0/0:0.0,-170.84,-300.0:19:99:707:24 0/0:0.0,-158.71,-300.0:21:99:742:32 0/0:0.0,-189.91,-300.0:20:99:842:39 0/0:0.0,-24.89,-300.0:15:99:173:16 0/0:0.0,-47.56,-300.0:12:99:217:9 0/0:0.0,-38.75,-300.0:12:99:158:5 0/0:0.0,-46.34,-300.0:14:99:250:21 0/0:0.0,-46.72,-300.0:9:99:181:5 0/0:0.0,-47.03,-300.0:8:99:196:9 0/0:0.0,-37.38,-300.0:11:99:181:12 0/0:0.0,-48.75,-300.0:14:99:194:7 0/0:0.0,-43.8,-300.0:9:99:195:11 0/0:0.0,-59.94,-300.0:13:99:258:12 0/0:0.0,-56.4,-300.0:12:99:276:15 0/0:0.0,-60.11,-300.0:14:99:251:11 0/0:0.0,-47.96,-300.0:11:99:198:9 0/0:0.0,-39.35,-300.0:11:99:156:6 0/0:0.0,-45.17,-300.0:15:99:202:10 0/0:0.0,-31.98,-300.0:16:99:210:16 0/0:0.0,-39.52,-300.0:10:99:226:18 0/0:0.0,-135.29,-300.0:25:99:733:46 0/0:0.0,-113.23,-300.0:26:99:476:14 0/0:0.0,-139.63,-300.0:31:99:674:36 0/0:0.0,-181.01,-300.0:25:99:1041:58 chrXII 41221 . TAC T 2975 alleleBias BRF=0.03;FR=0.1970;HP=2;HapScore=1;MGOF=32;MMLQ=16;MQ=59.32;NF=336;NR=514;PP=2975;QD=20;SC=TGTGCGTATATACATATATAT;SbPval=0.97;Source=Platypus;TC=21781;TCF=9941;TCR=11840;TR=850;WE=41252;WS=41181 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-51.61,-300.0:27:99:419:9 0/0:0.0,-13.18,-300.0:6:99:152:11 0/0:0.0,-3.13,-236.92:7:31:98:8 0/1:-0.54,0.0,-156.25:3:7:64:2 0/0:0.0,-61.65,-300.0:21:99:448:13 0/1:-2.79,0.0,-172.09:4:28:77:5 0/1:-6.69,0.0,-262.79:7:67:119:6 0/0:0.0,-11.03,-177.82:7:99:79:10 0/1:-39.95,0.0,-300.0:25:99:213:10 0/0:0.0,-110.17,-300.0:28:99:587:20 0/0:0.0,-137.5,-300.0:29:99:792:28 0/0:0.0,-81.69,-300.0:30:99:448:15 0/0:0.0,-67.97,-300.0:32:99:489:25 0/0:0.0,-96.59,-300.0:31:99:584:25 0/0:0.0,-109.73,-300.0:30:99:649:28 0/0:0.0,-103.93,-300.0:26:99:663:26 0/0:0.0,-115.56,-300.0:27:99:632:22 0/0:0.0,-84.54,-300.0:24:99:548:21 0/0:0.0,-103.53,-300.0:25:99:694:24 0/0:0.0,-300.0,-300.0:27:99:1946:59 0/0:0.0,-69.81,-300.0:28:99:489:22 0/0:0.0,-199.99,-300.0:27:99:1227:39 0/0:0.0,-151.84,-300.0:30:99:701:28 0/0:0.0,-145.05,-300.0:27:99:986:50 0/0:0.0,-78.1,-300.0:28:99:458:19 0/0:0.0,-127.99,-300.0:27:99:711:26 0/0:0.0,-116.19,-300.0:28:99:630:21 0/0:0.0,-145.48,-300.0:28:99:851:39 0/1:-15.66,0.0,-300.0:29:99:139:9 0/1:-13.55,0.0,-300.0:22:99:155:8 0/1:-36.15,0.0,-276.15:22:99:146:6 0/1:-18.0,0.0,-300.0:24:99:211:10 0/1:-17.41,0.0,-300.0:22:99:194:10 0/1:-1.16,0.0,-300.0:26:12:204:9 0/1:-9.72,0.0,-300.0:24:97:190:3 ./.:-0.16,0.0,-300.0:20:4:169:7 0/0:0.0,-2.1,-300.0:21:21:205:6 0/1:-19.85,0.0,-300.0:21:99:251:9 0/1:-10.6,0.0,-300.0:23:99:214:7 0/1:-24.69,0.0,-300.0:24:99:243:11 0/1:-34.0,0.0,-300.0:24:99:215:10 0/1:-15.31,0.0,-300.0:25:99:204:10 0/1:-23.11,0.0,-300.0:23:99:185:5 0/1:-7.66,0.0,-300.0:22:77:150:6 0/1:-24.13,0.0,-300.0:28:99:173:9 0/0:0.0,-127.96,-300.0:27:99:736:28 0/0:0.0,-59.71,-300.0:28:99:471:18 0/0:0.0,-107.58,-300.0:29:99:627:27 0/0:0.0,-130.4,-300.0:29:99:945:31 chrXII 41223 . CAT C,CATAT 3000 alleleBias BRF=0.03;FR=0.0205,0.1973;HP=2;HapScore=1;MGOF=32;MMLQ=9;MQ=59.35;NF=306,306;NR=514,514;PP=128,3000;QD=0.159756097561;SC=TGCGTATATACATATATATAT;SbPval=0.79;Source=Platypus;TC=23688;TCF=10299;TCR=13389;TR=820,820;WE=41252;WS=41181 GT:GL:GOF:GQ:NR:NV 0/0:-1,-1,-1:27:99:442,442:9,9 0/0:-1,-1,-1:6:20:176,176:11,11 1/0:-1,-1,-1:7:28:122,122:8,8 0/2:-1,-1,-1:3:7:69,69:2,2 0/0:-1,-1,-1:21:99:485,485:10,10 0/2:-1,-1,-1:4:28:96,96:3,3 0/2:-1,-1,-1:7:67:130,130:7,7 1/0:-1,-1,-1:7:99:102,102:10,10 0/2:-1,-1,-1:25:99:241,241:11,11 0/0:-1,-1,-1:28:99:629,629:19,19 0/0:-1,-1,-1:29:99:856,856:27,27 0/0:-1,-1,-1:30:99:482,482:13,13 0/0:-1,-1,-1:32:99:534,534:25,25 0/0:-1,-1,-1:31:99:622,622:24,24 0/0:-1,-1,-1:30:99:704,704:29,29 0/0:-1,-1,-1:26:99:710,710:22,22 0/0:-1,-1,-1:27:99:669,669:21,21 0/0:-1,-1,-1:24:99:606,606:19,19 0/0:-1,-1,-1:25:99:734,734:23,23 0/0:-1,-1,-1:27:99:2113,2113:57,57 0/0:-1,-1,-1:28:99:526,526:21,21 0/0:-1,-1,-1:27:99:1328,1328:39,39 0/0:-1,-1,-1:30:99:771,771:24,24 0/0:-1,-1,-1:27:99:1045,1045:47,47 0/0:-1,-1,-1:28:99:491,491:17,17 0/0:-1,-1,-1:27:99:762,762:26,26 0/0:-1,-1,-1:28:99:672,672:20,20 0/0:-1,-1,-1:28:99:898,898:38,38 0/2:-1,-1,-1:29:99:154,154:10,10 0/2:-1,-1,-1:22:99:184,184:8,8 0/2:-1,-1,-1:22:99:173,173:6,6 0/2:-1,-1,-1:24:99:240,240:11,11 0/2:-1,-1,-1:22:99:224,224:10,10 0/2:-1,-1,-1:26:12:234,234:9,9 0/2:-1,-1,-1:24:97:209,209:3,3 0/2:-1,-1,-1:20:4:201,201:7,7 0/0:-1,-1,-1:21:21:218,218:6,6 0/2:-1,-1,-1:21:99:282,282:9,9 0/2:-1,-1,-1:23:99:260,260:8,8 0/2:-1,-1,-1:24:99:282,282:11,11 0/2:-1,-1,-1:24:99:236,236:10,10 0/2:-1,-1,-1:25:99:230,230:10,10 0/2:-1,-1,-1:23:99:224,224:5,5 0/2:-1,-1,-1:22:77:169,169:5,5 0/2:-1,-1,-1:28:99:191,191:8,8 0/0:-1,-1,-1:27:99:794,794:27,27 0/0:-1,-1,-1:28:99:498,498:18,18 0/0:-1,-1,-1:29:99:667,667:26,26 0/0:-1,-1,-1:29:99:1003,1003:31,31 chrXII 46703 . A AT 121 QD;alleleBias BRF=0.03;FR=0.0102;HP=13;HapScore=1;MGOF=34;MMLQ=27;MQ=59.93;NF=152;NR=176;PP=121;QD=0.387195121951;SC=TATACTAGCTATTTTTTTTTT;SbPval=0.09;Source=Platypus;TC=24386;TCF=10870;TCR=13516;TR=328;WE=46724;WS=46689 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-22.99,-300.0:33:99:378:8 0/0:0.0,-67.53,-300.0:2:99:248:4 0/0:0.0,-48.13,-257.3:1:99:163:1 0/0:0.0,-25.77,-160.87:3:99:85:0 0/1:-13.01,0.0,-300.0:26:99:403:6 0/0:0.0,-36.02,-201.6:1:99:119:5 0/0:0.0,-49.45,-259.8:1:99:166:3 0/0:0.0,-34.8,-204.4:2:99:124:2 0/0:0.0,-59.29,-300.0:14:99:200:6 0/0:0.0,-158.73,-300.0:20:99:608:6 0/0:0.0,-223.28,-300.0:20:99:863:12 0/0:0.0,-147.83,-300.0:21:99:536:2 0/0:0.0,-171.07,-300.0:19:99:631:6 0/0:0.0,-178.72,-300.0:23:99:642:9 0/0:0.0,-197.54,-300.0:20:99:740:2 0/0:0.0,-229.17,-300.0:18:99:846:9 0/0:0.0,-215.25,-300.0:20:99:784:8 0/0:0.0,-152.97,-300.0:20:99:572:6 0/0:0.0,-225.41,-300.0:20:99:871:13 0/0:0.0,-300.0,-300.0:21:99:2361:33 0/0:0.0,-169.76,-300.0:19:99:602:4 0/0:0.0,-300.0,-300.0:20:99:1428:14 0/0:0.0,-216.85,-300.0:22:99:811:12 0/0:0.0,-290.23,-300.0:21:99:1114:7 0/0:0.0,-136.46,-300.0:21:99:516:8 0/0:0.0,-217.45,-300.0:18:99:788:12 0/0:0.0,-197.81,-300.0:19:99:746:9 0/0:0.0,-272.76,-300.0:21:99:978:8 0/0:0.0,-46.52,-266.49:18:99:156:5 0/0:0.0,-56.83,-300.0:12:99:199:3 0/0:0.0,-42.27,-239.48:11:99:143:5 0/0:0.0,-58.71,-300.0:14:99:200:4 0/0:0.0,-48.27,-273.9:11:99:168:5 0/0:0.0,-43.84,-252.45:11:99:148:6 0/0:0.0,-37.98,-231.87:16:99:137:4 0/0:0.0,-49.58,-294.9:11:99:187:5 0/0:0.0,-48.49,-286.2:13:99:164:3 0/0:0.0,-65.92,-300.0:13:99:235:6 0/0:0.0,-57.4,-300.0:15:99:194:5 0/0:0.0,-54.76,-300.0:15:99:191:4 0/0:0.0,-55.73,-300.0:13:99:196:6 0/0:0.0,-44.13,-253.5:16:99:148:2 0/0:0.0,-45.19,-263.34:15:99:156:2 0/0:0.0,-54.05,-300.0:14:99:185:5 0/0:0.0,-49.75,-289.0:16:99:170:6 0/0:0.0,-224.37,-300.0:21:99:834:10 0/0:0.0,-141.02,-300.0:26:99:493:3 0/0:0.0,-185.59,-300.0:34:99:721:12 0/0:0.0,-271.48,-300.0:23:99:1038:12 chrXII 46715 . TAA T 69 SC;QD;alleleBias BRF=0.03;FR=0.0102;HP=11;HapScore=1;MGOF=34;MMLQ=32;MQ=59.94;NF=152;NR=175;PP=69;QD=0.229357798165;SC=TTTTTTTTTTTAATTTTGTTT;SbPval=0.09;Source=Platypus;TC=22989;TCF=10471;TCR=12518;TR=327;WE=46724;WS=46689 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-22.99,-300.0:33:99:362:8 0/0:0.0,-71.22,-300.0:2:99:233:6 0/0:0.0,-48.13,-300.0:1:99:158:3 0/0:0.0,-25.77,-300.0:3:99:83:1 0/1:-13.01,0.0,-300.0:26:99:376:6 0/0:0.0,-36.02,-300.0:1:99:116:6 0/0:0.0,-49.45,-300.0:1:99:156:3 0/0:0.0,-34.8,-300.0:2:99:113:2 0/0:0.0,-59.3,-300.0:14:99:193:6 0/0:0.0,-172.46,-300.0:20:99:580:5 0/0:0.0,-232.12,-300.0:20:99:799:11 0/0:0.0,-156.37,-300.0:21:99:510:2 0/0:0.0,-176.79,-300.0:19:99:594:6 0/0:0.0,-181.17,-300.0:23:99:604:9 0/0:0.0,-204.94,-300.0:20:99:689:2 0/0:0.0,-231.78,-300.0:18:99:783:9 0/0:0.0,-218.43,-300.0:20:99:751:8 0/0:0.0,-154.39,-300.0:20:99:529:6 0/0:0.0,-240.17,-300.0:20:99:828:12 0/0:0.0,-300.0,-300.0:21:99:2223:32 0/0:0.0,-172.46,-300.0:19:99:578:4 0/0:0.0,-300.0,-300.0:20:99:1342:13 0/0:0.0,-228.17,-300.0:22:99:755:12 0/0:0.0,-300.0,-300.0:21:99:1050:7 0/0:0.0,-145.33,-300.0:21:99:479:9 0/0:0.0,-220.67,-300.0:18:99:754:11 0/0:0.0,-211.82,-300.0:19:99:707:9 0/0:0.0,-275.39,-300.0:21:99:905:8 0/0:0.0,-46.52,-300.0:18:99:147:5 0/0:0.0,-56.83,-300.0:12:99:190:3 0/0:0.0,-42.28,-300.0:11:99:137:5 0/0:0.0,-59.01,-300.0:14:99:193:5 0/0:0.0,-48.27,-300.0:11:99:154:5 0/0:0.0,-43.96,-300.0:10:99:145:6 0/0:0.0,-37.98,-300.0:16:99:133:4 0/0:0.0,-49.58,-300.0:11:99:175:5 0/0:0.0,-48.49,-300.0:13:99:157:3 0/0:0.0,-65.93,-300.0:13:99:220:6 0/0:0.0,-57.4,-300.0:15:99:189:5 0/0:0.0,-54.76,-300.0:15:99:180:4 0/0:0.0,-55.73,-300.0:13:99:187:6 0/0:0.0,-44.13,-300.0:16:99:144:2 0/0:0.0,-45.19,-300.0:15:99:149:2 0/0:0.0,-54.05,-300.0:14:99:178:5 0/0:0.0,-49.75,-300.0:16:99:161:6 0/0:0.0,-233.91,-300.0:21:99:782:10 0/0:0.0,-141.65,-300.0:26:99:469:3 0/0:0.0,-185.59,-300.0:34:99:672:11 0/0:0.0,-285.28,-300.0:23:99:977:10 chrXII 48670 . AT A 442 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=1;HapScore=1;MGOF=28;MMLQ=12;MQ=59.94;NF=109;NR=121;PP=442;QD=2.0652173913;SC=TGAAAAACAGATATAAAAAAA;SbPval=1.0;Source=Platypus;TC=20103;TCF=9257;TCR=10846;TR=230;WE=48683;WS=48651 GT:GL:GOF:GQ:NR:NV 1/0:-17.46,0.0,-300.0:24:99:325:0 0/0:0.0,-58.85,-300.0:1:99:195:1 0/0:0.0,-45.01,-300.0:1:99:149:2 0/0:0.0,-30.53,-300.0:2:99:94:3 1/0:-30.91,0.0,-300.0:28:99:344:1 0/0:0.0,-27.57,-300.0:1:99:86:0 0/0:0.0,-41.42,-300.0:1:99:135:1 0/0:0.0,-31.11,-300.0:1:99:101:2 0/0:0.0,-37.7,-300.0:19:99:172:3 0/0:0.0,-153.48,-300.0:17:99:526:9 0/0:0.0,-209.01,-300.0:16:99:716:3 0/0:0.0,-121.97,-300.0:21:99:432:4 0/0:0.0,-147.86,-300.0:17:99:519:7 0/0:0.0,-154.88,-300.0:19:99:517:3 0/0:0.0,-179.52,-300.0:19:99:598:9 0/0:0.0,-207.76,-300.0:19:99:712:10 0/0:0.0,-169.64,-300.0:23:99:610:6 0/0:0.0,-130.34,-300.0:19:99:460:6 0/0:0.0,-195.99,-300.0:17:99:708:7 0/0:0.0,-300.0,-300.0:18:99:1894:15 0/0:0.0,-135.26,-300.0:19:99:442:4 0/0:0.0,-300.0,-300.0:20:99:1081:12 0/0:0.0,-191.23,-300.0:17:99:661:3 0/0:0.0,-272.49,-300.0:20:99:973:11 0/0:0.0,-131.99,-300.0:17:99:445:4 0/0:0.0,-202.35,-300.0:16:99:680:8 0/0:0.0,-166.3,-300.0:19:99:594:4 0/0:0.0,-215.43,-300.0:20:99:723:10 0/0:0.0,-33.27,-300.0:17:99:140:3 0/0:0.0,-35.26,-300.0:18:99:163:3 0/0:0.0,-25.6,-300.0:19:99:113:1 0/0:0.0,-47.63,-300.0:20:99:189:8 0/0:0.0,-30.96,-300.0:20:99:152:3 0/0:0.0,-39.0,-300.0:19:99:164:6 0/0:0.0,-22.19,-300.0:15:99:105:4 0/0:0.0,-36.86,-300.0:22:99:156:3 0/0:0.0,-37.87,-300.0:19:99:156:3 0/0:0.0,-40.5,-300.0:24:99:176:8 0/0:0.0,-34.53,-300.0:17:99:183:8 0/0:0.0,-41.43,-300.0:21:99:150:6 0/0:0.0,-33.96,-300.0:24:99:150:1 0/0:0.0,-29.82,-300.0:19:99:124:1 0/0:0.0,-34.51,-300.0:17:99:118:4 0/0:0.0,-40.75,-300.0:21:99:165:0 0/0:0.0,-35.9,-300.0:14:99:167:3 0/0:0.0,-182.92,-300.0:22:99:663:4 0/0:0.0,-127.64,-300.0:19:99:429:2 0/0:0.0,-181.32,-300.0:19:99:608:4 0/0:0.0,-276.39,-300.0:21:99:940:7 chrXII 48671 . T TA 442 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=2;HapScore=1;MGOF=28;MMLQ=12;MQ=59.94;NF=112;NR=121;PP=442;QD=2.03862660944;SC=GAAAAACAGATATAAAAAAAA;SbPval=0.68;Source=Platypus;TC=20111;TCF=9296;TCR=10815;TR=233;WE=48683;WS=48651 GT:GL:GOF:GQ:NR:NV 1/0:-17.46,0.0,-300.0:24:99:324:0 0/0:0.0,-58.85,-300.0:1:99:193:1 0/0:0.0,-45.01,-300.0:1:99:148:2 0/0:0.0,-30.53,-300.0:2:99:95:3 1/0:-30.91,0.0,-300.0:28:99:350:2 0/0:0.0,-27.57,-300.0:1:99:86:0 0/0:0.0,-41.42,-300.0:1:99:133:1 0/0:0.0,-31.11,-300.0:1:99:100:2 0/0:0.0,-37.7,-300.0:19:99:169:3 0/0:0.0,-153.48,-300.0:17:99:520:9 0/0:0.0,-209.01,-300.0:16:99:718:3 0/0:0.0,-121.97,-300.0:21:99:433:4 0/0:0.0,-147.86,-300.0:17:99:519:7 0/0:0.0,-154.88,-300.0:19:99:521:3 0/0:0.0,-179.52,-300.0:19:99:605:9 0/0:0.0,-207.76,-300.0:19:99:713:11 0/0:0.0,-169.64,-300.0:23:99:606:6 0/0:0.0,-130.34,-300.0:19:99:460:6 0/0:0.0,-195.99,-300.0:17:99:704:7 0/0:0.0,-300.0,-300.0:18:99:1899:15 0/0:0.0,-135.26,-300.0:19:99:443:4 0/0:0.0,-300.0,-300.0:20:99:1079:12 0/0:0.0,-191.23,-300.0:17:99:662:3 0/0:0.0,-272.49,-300.0:20:99:971:11 0/0:0.0,-131.99,-300.0:17:99:453:4 0/0:0.0,-202.35,-300.0:16:99:677:9 0/0:0.0,-166.3,-300.0:19:99:591:4 0/0:0.0,-215.43,-300.0:20:99:722:10 0/0:0.0,-33.27,-300.0:17:99:140:3 0/0:0.0,-35.26,-300.0:18:99:166:3 0/0:0.0,-25.6,-300.0:19:99:114:1 0/0:0.0,-47.63,-300.0:20:99:191:8 0/0:0.0,-30.96,-300.0:20:99:150:3 0/0:0.0,-39.0,-300.0:19:99:165:6 0/0:0.0,-22.19,-291.43:15:99:108:4 0/0:0.0,-36.86,-300.0:22:99:154:3 0/0:0.0,-37.87,-300.0:19:99:155:3 0/0:0.0,-40.5,-300.0:24:99:176:8 0/0:0.0,-34.53,-300.0:17:99:181:8 0/0:0.0,-41.43,-300.0:21:99:147:6 0/0:0.0,-33.96,-300.0:24:99:151:1 0/0:0.0,-29.82,-300.0:19:99:123:1 0/0:0.0,-34.51,-300.0:17:99:116:4 0/0:0.0,-40.75,-300.0:21:99:167:0 0/0:0.0,-35.9,-300.0:14:99:170:3 0/0:0.0,-182.92,-300.0:22:99:660:4 0/0:0.0,-127.64,-300.0:19:99:427:2 0/0:0.0,-181.32,-300.0:19:99:611:4 0/0:0.0,-276.39,-300.0:21:99:945:7 chrXII 48672 . AT A 442 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=2;HapScore=1;MGOF=28;MMLQ=12;MQ=59.94;NF=114;NR=122;PP=442;QD=2.01271186441;SC=AAAAACAGATATAAAAAAAAA;SbPval=0.66;Source=Platypus;TC=20079;TCF=9337;TCR=10742;TR=236;WE=48683;WS=48651 GT:GL:GOF:GQ:NR:NV 1/0:-17.46,0.0,-300.0:24:99:326:0 0/0:0.0,-58.85,-300.0:1:99:192:1 0/0:0.0,-45.01,-300.0:1:99:149:2 0/0:0.0,-30.53,-225.69:2:99:95:3 1/0:-30.91,0.0,-300.0:28:99:353:2 0/0:0.0,-27.57,-212.58:1:99:87:0 0/0:0.0,-41.42,-299.46:1:99:132:1 0/0:0.0,-31.11,-236.39:1:99:100:2 0/0:0.0,-37.7,-300.0:19:99:168:3 0/0:0.0,-153.48,-300.0:17:99:520:9 0/0:0.0,-209.0,-300.0:16:99:717:3 0/0:0.0,-121.97,-300.0:21:99:433:4 0/0:0.0,-147.86,-300.0:17:99:517:7 0/0:0.0,-154.88,-300.0:19:99:518:3 0/0:0.0,-179.52,-300.0:19:99:604:9 0/0:0.0,-204.07,-300.0:19:99:709:11 0/0:0.0,-169.64,-300.0:23:99:603:6 0/0:0.0,-130.34,-300.0:19:99:461:6 0/0:0.0,-195.99,-300.0:17:99:698:7 0/0:0.0,-300.0,-300.0:18:99:1898:16 0/0:0.0,-135.26,-300.0:19:99:439:4 0/0:0.0,-300.0,-300.0:20:99:1072:12 0/0:0.0,-191.23,-300.0:17:99:659:3 0/0:0.0,-272.49,-300.0:20:99:972:11 0/0:0.0,-131.99,-300.0:17:99:452:4 0/0:0.0,-195.59,-300.0:16:99:680:9 0/0:0.0,-165.74,-300.0:19:99:585:4 0/0:0.0,-214.49,-300.0:20:99:723:10 0/0:0.0,-33.27,-266.42:17:99:141:3 0/0:0.0,-35.26,-300.0:18:99:167:3 0/0:0.0,-25.6,-240.95:19:99:114:1 0/0:0.0,-47.63,-300.0:20:99:192:8 0/0:0.0,-30.96,-276.31:20:99:148:3 0/0:0.0,-39.0,-300.0:19:99:165:6 0/0:0.0,-22.19,-198.81:15:99:107:4 0/0:0.0,-36.86,-292.84:22:99:154:3 0/0:0.0,-37.87,-300.0:19:99:153:4 0/0:0.0,-40.5,-300.0:24:99:179:8 0/0:0.0,-34.53,-300.0:17:99:181:8 0/0:0.0,-41.43,-287.85:21:99:147:6 0/0:0.0,-33.96,-281.17:24:99:155:2 0/0:0.0,-29.82,-234.72:19:99:123:1 0/0:0.0,-34.51,-243.34:17:99:115:4 0/0:0.0,-40.75,-300.0:21:99:167:0 0/0:0.0,-35.9,-300.0:14:99:170:3 0/0:0.0,-182.92,-300.0:22:99:665:4 0/0:0.0,-127.64,-300.0:19:99:420:2 0/0:0.0,-181.32,-300.0:19:99:614:4 0/0:0.0,-274.16,-300.0:21:99:940:7 chrXII 48673 . T TA 470 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=13;HapScore=1;MGOF=28;MMLQ=12;MQ=59.94;NF=111;NR=122;PP=470;QD=2.04291845494;SC=AAAACAGATATAAAAAAAAAA;SbPval=0.69;Source=Platypus;TC=21084;TCF=9742;TCR=11342;TR=233;WE=48683;WS=48651 GT:GL:GOF:GQ:NR:NV 1/0:-17.46,0.0,-300.0:24:99:346:0 0/0:0.0,-58.85,-300.0:1:99:188:0 0/0:0.0,-45.01,-241.37:1:99:153:3 0/0:0.0,-30.53,-176.42:2:99:98:2 1/0:-30.91,0.0,-300.0:28:99:361:2 0/0:0.0,-27.57,-176.4:1:99:88:0 0/0:0.0,-41.42,-226.74:1:99:138:1 0/0:0.0,-31.11,-190.25:1:99:101:2 0/0:0.0,-37.7,-282.87:19:99:175:3 0/0:0.0,-153.48,-300.0:17:99:556:9 0/0:0.0,-209.0,-300.0:16:99:755:3 0/0:0.0,-121.97,-300.0:21:99:463:4 0/0:0.0,-147.86,-300.0:17:99:538:7 0/0:0.0,-154.88,-300.0:19:99:551:3 0/0:0.0,-179.52,-300.0:19:99:639:9 0/0:0.0,-204.07,-300.0:19:99:735:11 0/0:0.0,-169.64,-300.0:23:99:651:6 0/0:0.0,-130.34,-300.0:19:99:484:6 0/0:0.0,-195.99,-300.0:17:99:749:7 0/0:0.0,-300.0,-300.0:18:99:1981:15 0/0:0.0,-135.26,-300.0:19:99:465:4 0/0:0.0,-300.0,-300.0:20:99:1136:11 0/0:0.0,-191.23,-300.0:17:99:695:3 0/0:0.0,-272.49,-300.0:20:99:1015:11 0/0:0.0,-131.99,-300.0:17:99:466:4 0/0:0.0,-195.59,-300.0:16:99:706:9 0/0:0.0,-165.74,-300.0:19:99:600:4 0/0:0.0,-214.49,-300.0:20:99:753:10 0/0:0.0,-33.27,-231.33:17:99:145:3 0/0:0.0,-35.26,-251.59:18:99:177:3 0/0:0.0,-25.6,-199.03:19:99:115:1 0/0:0.0,-47.63,-300.0:20:99:202:9 0/0:0.0,-30.96,-232.08:20:99:155:3 0/0:0.0,-39.0,-261.28:19:99:173:6 0/0:0.0,-22.19,-163.3:15:99:123:4 0/0:0.0,-36.86,-235.97:22:99:158:3 0/0:0.0,-37.87,-253.55:19:99:160:4 0/0:0.0,-40.5,-258.93:24:99:192:8 0/0:0.0,-34.53,-247.02:17:99:188:8 0/0:0.0,-41.43,-242.47:21:99:163:5 0/0:0.0,-33.96,-233.7:24:99:163:2 0/0:0.0,-29.82,-200.07:19:99:129:1 0/0:0.0,-34.51,-196.65:17:99:123:4 0/0:0.0,-40.75,-254.99:21:99:174:0 0/0:0.0,-35.9,-270.59:14:99:174:3 0/0:0.0,-182.92,-300.0:22:99:705:4 0/0:0.0,-127.64,-300.0:19:99:444:2 0/0:0.0,-181.32,-300.0:19:99:639:4 0/0:0.0,-274.16,-300.0:21:99:996:7 chrXII 48855 . C CAA,CA 441 badReads;QD;alleleBias BRF=0.18;FR=0.1303,0.1553;HP=20;HapScore=1;MGOF=39;MMLQ=13;MQ=51.17;NF=404,404;NR=135,135;PP=441,275;QD=0.823747680891;SC=CTTCGGAAGCCAAAAAAAAAA;SbPval=0.65;Source=Platypus;TC=17377;TCF=10747;TCR=6630;TR=539,539;WE=48908;WS=48827 GT:GL:GOF:GQ:NR:NV 1/0:-1,-1,-1:26:93:223,223:2,2 2/0:-1,-1,-1:2:35:158,158:9,9 2/0:-1,-1,-1:1:33:118,118:4,4 2/0:-1,-1,-1:2:3:81,81:3,3 2/0:-1,-1,-1:18:20:229,229:1,1 2/0:-1,-1,-1:3:24:84,84:9,9 2/0:-1,-1,-1:1:28:111,111:7,7 2/0:-1,-1,-1:2:9:74,74:4,4 2/0:-1,-1,-1:18:8:107,107:0,0 0/0:-1,-1,-1:25:99:517,517:15,15 0/0:-1,-1,-1:25:99:671,671:19,19 0/0:-1,-1,-1:22:99:427,427:15,15 2/0:-1,-1,-1:27:20:434,434:22,22 0/0:-1,-1,-1:27:99:519,519:16,16 0/0:-1,-1,-1:26:99:587,587:18,18 0/0:-1,-1,-1:24:99:578,578:13,13 0/0:-1,-1,-1:24:99:561,561:18,18 0/0:-1,-1,-1:24:99:437,437:11,11 0/0:-1,-1,-1:26:99:633,633:20,20 0/0:-1,-1,-1:27:99:1629,1629:55,55 0/0:-1,-1,-1:23:99:427,427:11,11 0/0:-1,-1,-1:27:99:1030,1030:41,41 0/0:-1,-1,-1:27:99:591,591:19,19 0/0:-1,-1,-1:32:99:848,848:31,31 0/0:-1,-1,-1:29:99:359,359:11,11 0/0:-1,-1,-1:27:29:576,576:17,17 0/0:-1,-1,-1:25:99:599,599:21,21 0/0:-1,-1,-1:25:99:666,666:19,19 2/0:-1,-1,-1:20:9:65,65:1,1 1/0:-1,-1,-1:34:35:63,63:1,1 1/2:-1,-1,-1:18:19:82,82:2,2 1/0:-1,-1,-1:33:16:118,118:3,3 2/0:-1,-1,-1:15:31:102,102:0,0 1/0:-1,-1,-1:14:17:83,83:3,3 2/0:-1,-1,-1:12:22:74,74:0,0 1/0:-1,-1,-1:26:32:80,80:2,2 1/0:-1,-1,-1:18:27:92,92:1,1 2/0:-1,-1,-1:17:4:110,110:2,2 2/0:-1,-1,-1:18:32:138,138:3,3 1/0:-1,-1,-1:21:77:123,123:1,1 2/0:-1,-1,-1:23:6:83,83:1,1 1/0:-1,-1,-1:32:52:78,78:1,1 2/0:-1,-1,-1:14:6:78,78:1,1 1/0:-1,-1,-1:34:29:98,98:1,1 1/0:-1,-1,-1:37:46:62,62:1,1 0/0:-1,-1,-1:23:99:593,593:20,20 0/0:-1,-1,-1:29:99:446,446:17,17 0/0:-1,-1,-1:39:99:605,605:17,17 0/0:-1,-1,-1:33:99:930,930:30,30 chrXII 48879 . AG A 250 SC;QD;alleleBias BRF=0.18;FR=0.1357;HP=20;HapScore=1;MGOF=39;MMLQ=15;MQ=52.29;NF=397;NR=174;PP=250;QD=0.443082311734;SC=AAAAAAAAAAAGAAAAAAAGA;SbPval=0.07;Source=Platypus;TC=19778;TCF=9546;TCR=10232;TR=571;WE=48908;WS=48827 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-6.9,-300.0:26:69:274:2 1/0:-6.03,0.0,-205.34:2:60:194:14 1/0:-3.48,0.0,-140.6:1:35:140:7 ./.:-0.06,0.0,-109.46:2:3:92:6 1/0:-1.97,0.0,-300.0:18:20:285:0 1/0:-2.86,0.0,-143.11:3:29:116:14 1/0:-3.2,0.0,-184.89:1:32:148:10 1/0:-0.85,0.0,-125.11:2:9:111:6 1/0:-0.68,0.0,-136.89:18:8:105:0 0/0:0.0,-22.54,-300.0:25:99:539:16 0/0:0.0,-98.91,-300.0:25:99:768:21 0/0:0.0,-53.74,-300.0:22:99:450:15 0/0:0.0,-46.22,-299.9:27:99:505:25 0/0:0.0,-100.94,-300.0:27:99:615:16 0/0:0.0,-76.72,-300.0:26:99:680:17 0/0:0.0,-111.87,-300.0:24:99:653:13 0/0:0.0,-84.81,-300.0:24:99:643:17 0/0:0.0,-67.63,-300.0:24:99:481:10 0/0:0.0,-91.02,-300.0:26:99:772:21 0/0:0.0,-247.83,-300.0:27:99:1877:54 0/0:0.0,-51.85,-300.0:23:99:487:11 0/0:0.0,-132.54,-300.0:27:99:1198:41 0/0:0.0,-84.9,-300.0:27:99:692:19 0/0:0.0,-128.59,-300.0:32:99:967:37 0/0:0.0,-56.9,-300.0:29:99:438:11 0/0:0.0,-66.53,-300.0:27:99:673:18 0/0:0.0,-56.96,-300.0:25:99:641:23 0/0:0.0,-106.03,-300.0:25:99:757:21 1/0:-0.86,0.0,-130.71:20:9:80:1 0/0:0.0,-3.44,-152.25:34:34:90:1 0/0:0.0,-2.81,-112.77:18:28:74:2 0/0:0.0,-1.56,-131.24:33:16:104:2 1/0:-3.49,0.0,-118.09:15:35:87:0 0/0:0.0,-1.34,-109.46:14:14:90:3 1/0:-2.34,0.0,-109.15:12:23:74:0 0/0:0.0,-2.97,-117.32:26:30:93:2 0/0:0.0,-2.66,-134.0:18:27:86:0 ./.:-0.18,0.0,-154.59:17:4:122:1 1/0:-3.25,0.0,-180.55:18:32:135:3 0/0:0.0,-5.61,-187.81:21:56:134:1 1/0:-0.5,0.0,-128.57:23:6:86:0 0/0:0.0,-4.94,-116.0:32:49:79:1 1/0:-0.43,0.0,-82.88:14:6:71:1 0/0:0.0,-2.87,-118.91:34:29:101:1 0/0:0.0,-5.9,-105.02:37:59:77:1 0/0:0.0,-81.69,-300.0:23:99:679:21 0/0:0.0,-41.23,-300.0:29:99:478:17 0/0:0.0,-60.36,-300.0:39:99:686:17 0/0:0.0,-119.58,-300.0:33:99:1051:31 chrXII 48880 . G A 326 SC;badReads;QD;alleleBias;strandBias BRF=0.18;FR=0.1296;HP=27;HapScore=1;MGOF=39;MMLQ=14;MQ=52.29;NF=2545;NR=144;PP=326;QD=0.134165568073;SC=AAAAAAAAAAGAAAAAAAGAA;SbPval=0.0;Source=Platypus;TC=20061;TCF=9916;TCR=10145;TR=2689;WE=48908;WS=48827 GT:GL:GOF:GQ:NR:NV 1/0:-6.9,0.0,-300.0:26:69:279:82 0/0:0.0,-6.03,-213.78:2:60:200:68 0/0:0.0,-3.48,-145.73:1:35:141:55 ./.:0.0,-0.06,-109.3:2:3:93:31 0/0:0.0,-1.97,-300.0:18:20:293:75 0/0:0.0,-2.86,-147.74:3:29:120:34 0/0:0.0,-3.2,-189.12:1:32:156:46 0/0:0.0,-0.85,-127.15:2:9:117:39 0/0:0.0,-0.68,-135.14:18:8:108:33 0/0:0.0,-35.34,-300.0:25:99:543:73 0/0:0.0,-108.09,-300.0:25:99:791:88 0/0:0.0,-75.52,-300.0:22:99:456:50 0/0:0.0,-57.83,-299.94:27:99:508:50 0/0:0.0,-116.09,-300.0:27:99:619:56 0/0:0.0,-92.48,-300.0:26:99:693:81 0/0:0.0,-110.95,-300.0:24:99:664:57 0/0:0.0,-95.76,-300.0:24:99:648:57 0/0:0.0,-77.84,-300.0:24:99:489:45 0/0:0.0,-97.22,-300.0:26:99:800:85 0/0:0.0,-282.54,-300.0:27:99:1892:193 0/0:0.0,-65.66,-300.0:23:99:500:64 0/0:0.0,-154.49,-300.0:27:99:1227:126 0/0:0.0,-94.71,-300.0:27:99:706:77 0/0:0.0,-146.04,-300.0:32:99:968:88 0/0:0.0,-68.47,-300.0:29:99:441:48 0/0:0.0,-75.15,-300.0:27:99:692:76 0/0:0.0,-75.65,-300.0:25:99:643:70 0/0:0.0,-131.48,-300.0:25:99:760:75 0/0:0.0,-0.86,-128.92:20:9:81:19 1/0:-3.44,0.0,-145.06:34:34:94:24 1/0:-2.81,0.0,-110.24:18:28:77:18 1/0:-1.56,0.0,-129.0:33:16:101:33 0/0:0.0,-3.49,-119.83:15:35:84:24 1/0:-1.34,0.0,-109.39:14:14:88:28 0/0:0.0,-2.34,-109.33:12:23:72:18 1/0:-2.97,0.0,-115.27:26:30:93:26 1/0:-2.66,0.0,-131.24:18:27:88:23 ./.:0.0,-0.18,-155.24:17:4:120:40 0/0:0.0,-3.25,-181.39:18:32:138:39 1/0:-5.61,0.0,-185.58:21:56:134:38 0/0:0.0,-0.5,-132.31:23:6:86:23 1/0:-4.94,0.0,-109.9:32:49:76:20 0/0:0.0,-0.43,-81.52:14:6:71:23 1/0:-2.87,0.0,-116.25:34:29:102:40 1/0:-5.9,0.0,-102.39:37:59:80:28 0/0:0.0,-100.73,-300.0:23:99:681:69 0/0:0.0,-62.88,-300.0:29:99:489:58 0/0:0.0,-56.46,-300.0:39:99:698:74 0/0:0.0,-118.85,-300.0:33:99:1061:102 chrXII 52614 . A T 245 badReads;QD;alleleBias BRF=0.03;FR=0.0470;HP=6;HapScore=1;MGOF=32;MMLQ=14;MQ=59.88;NF=24;NR=715;PP=245;QD=0.378580801823;SC=TCTGTTTTTTAGCCCTTTTTT;SbPval=1.0;Source=Platypus;TC=22602;TCF=10196;TCR=12406;TR=739;WE=52646;WS=52595 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-54.78,-300.0:32:99:419:29 0/0:0.0,-47.2,-300.0:1:99:187:6 0/0:0.0,-39.24,-300.0:2:99:154:7 0/0:0.0,-25.03,-259.82:2:99:98:3 0/0:0.0,-43.24,-300.0:26:99:404:28 0/0:0.0,-25.03,-300.0:2:99:107:9 0/0:0.0,-45.31,-300.0:2:99:176:7 0/0:0.0,-19.47,-211.62:3:99:94:5 0/0:0.0,-7.06,-300.0:21:71:169:20 0/0:0.0,-154.35,-300.0:24:99:605:13 0/0:0.0,-229.13,-300.0:26:99:849:9 0/0:0.0,-135.23,-300.0:25:99:522:7 0/0:0.0,-158.99,-300.0:27:99:585:9 0/0:0.0,-155.84,-300.0:28:99:587:10 0/0:0.0,-178.55,-300.0:27:99:675:12 0/0:0.0,-209.32,-300.0:26:99:786:12 0/0:0.0,-190.89,-300.0:24:99:731:12 0/0:0.0,-150.57,-300.0:25:99:556:7 0/0:0.0,-214.67,-300.0:26:99:839:15 0/0:0.0,-300.0,-300.0:26:99:2056:28 0/0:0.0,-145.6,-300.0:25:99:538:7 0/0:0.0,-300.0,-300.0:26:99:1303:28 0/0:0.0,-208.49,-300.0:25:99:810:16 0/0:0.0,-277.28,-300.0:26:99:1040:9 0/0:0.0,-118.61,-300.0:27:99:453:10 0/0:0.0,-169.51,-300.0:24:99:713:22 0/0:0.0,-193.64,-300.0:24:99:722:10 0/0:0.0,-223.62,-300.0:26:99:865:10 0/1:-2.55,0.0,-196.28:28:26:113:17 0/1:-9.31,0.0,-300.0:30:93:169:29 0/1:-15.72,0.0,-219.84:25:99:121:26 ./.:-0.21,0.0,-300.0:22:4:162:24 0/0:0.0,-10.34,-300.0:26:99:139:16 0/0:0.0,-10.1,-300.0:30:99:151:19 0/0:0.0,-5.73,-259.02:24:57:122:16 0/0:0.0,-3.49,-248.02:31:35:124:17 0/0:0.0,-4.69,-300.0:26:47:149:21 0/0:0.0,-10.38,-300.0:22:99:203:23 0/0:0.0,-16.67,-300.0:26:99:200:22 0/0:0.0,-14.69,-300.0:29:99:191:22 0/0:0.0,-10.32,-293.92:29:99:135:16 0/0:0.0,-5.17,-220.92:21:52:109:15 0/0:0.0,-6.22,-289.02:25:62:138:15 0/0:0.0,-6.92,-280.32:28:69:139:17 0/1:-1.98,0.0,-300.0:30:20:165:24 0/0:0.0,-212.74,-300.0:25:99:789:9 0/0:0.0,-123.66,-300.0:29:99:470:7 0/0:0.0,-186.44,-300.0:30:99:679:5 0/0:0.0,-277.46,-300.0:29:99:1091:19 chrXII 52618 . C CT 16 Q20;QD;alleleBias BRF=0.03;FR=0.0101;HP=15;HapScore=1;MGOF=32;MMLQ=15;MQ=59.88;NF=151;NR=255;PP=16;QD=0.0467980295567;SC=TTTTTTAGCCCTTTTTTTTTT;SbPval=0.45;Source=Platypus;TC=24145;TCF=10751;TCR=13394;TR=406;WE=52646;WS=52595 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-54.78,-300.0:32:99:418:5 0/0:0.0,-52.36,-185.25:1:99:175:4 0/0:0.0,-46.5,-179.95:2:99:162:7 0/0:0.0,-29.65,-129.37:2:99:99:5 0/0:0.0,-43.24,-295.2:26:99:385:3 0/0:0.0,-34.0,-152.96:2:99:100:3 0/0:0.0,-52.55,-186.65:2:99:180:9 0/0:0.0,-24.82,-122.25:3:99:86:7 0/0:0.0,-21.26,-172.31:21:99:194:1 0/0:0.0,-157.45,-300.0:24:99:636:18 0/0:0.0,-210.07,-300.0:26:99:904:7 0/0:0.0,-142.45,-300.0:25:99:535:8 0/0:0.0,-165.69,-300.0:27:99:623:6 0/0:0.0,-165.45,-300.0:28:99:629:8 0/0:0.0,-166.95,-300.0:27:99:736:13 0/0:0.0,-205.41,-300.0:26:99:831:8 0/0:0.0,-195.02,-300.0:24:99:781:14 0/0:0.0,-155.63,-300.0:25:99:587:10 0/0:0.0,-217.52,-300.0:26:99:878:11 0/0:0.0,-300.0,-300.0:26:99:2212:28 0/0:0.0,-152.34,-300.0:25:99:575:5 0/0:0.0,-300.0,-300.0:26:99:1400:26 0/0:0.0,-199.01,-300.0:25:99:887:14 0/0:0.0,-256.09,-300.0:26:99:1142:20 0/0:0.0,-133.01,-300.0:27:99:483:6 0/0:0.0,-184.39,-300.0:24:99:765:15 0/0:0.0,-194.35,-300.0:24:99:773:4 0/0:0.0,-217.14,-300.0:26:99:902:12 0/0:0.0,-9.99,-126.6:28:99:117:1 0/0:0.0,-31.48,-172.79:30:99:164:6 0/0:0.0,-17.25,-134.52:25:99:143:6 0/0:0.0,-10.72,-152.13:22:99:192:5 0/0:0.0,-22.79,-149.17:26:99:155:3 0/0:0.0,-22.79,-174.96:30:99:169:9 0/0:0.0,-7.17,-121.28:24:72:127:4 0/0:0.0,-14.38,-144.92:31:99:146:4 0/0:0.0,-6.78,-140.06:26:68:156:3 0/0:0.0,-29.91,-209.82:22:99:223:5 0/0:0.0,-40.8,-211.53:26:99:230:9 0/0:0.0,-29.27,-201.77:29:99:213:9 0/0:0.0,-23.19,-153.12:29:99:151:4 0/0:0.0,-9.23,-129.78:21:92:135:2 0/0:0.0,-20.64,-143.19:25:99:163:2 0/0:0.0,-18.91,-153.27:28:99:145:5 0/1:-1.97,0.0,-150.14:30:20:177:1 0/0:0.0,-204.16,-300.0:25:99:853:14 0/0:0.0,-126.02,-300.0:29:99:522:12 0/0:0.0,-175.98,-300.0:30:99:726:10 0/0:0.0,-269.28,-300.0:29:99:1160:15 chrXII 63980 . AT A 1020 QD;alleleBias BRF=0.03;FR=0.1515;HP=4;HapScore=1;MGOF=40;MMLQ=16;MQ=59.9;NF=265;NR=174;PP=1020;QD=2.42141230068;SC=TGGAGTATTTATCAAAAAAAA;SbPval=0.03;Source=Platypus;TC=19831;TCF=9970;TCR=9861;TR=439;WE=64025;WS=63950 GT:GL:GOF:GQ:NR:NV 1/0:-5.33,0.0,-300.0:25:53:226:1 0/0:0.0,-38.9,-300.0:3:99:155:13 0/0:0.0,-35.51,-300.0:2:99:122:7 0/0:0.0,-21.76,-191.67:2:99:71:4 1/0:-18.78,0.0,-300.0:29:99:256:1 0/0:0.0,-23.15,-210.97:2:99:83:4 0/0:0.0,-29.3,-274.77:3:99:103:7 0/0:0.0,-25.36,-224.37:3:99:90:8 1/0:-12.54,0.0,-209.11:24:99:122:4 0/0:0.0,-66.29,-300.0:29:99:571:15 0/0:0.0,-126.0,-300.0:31:99:730:14 0/0:0.0,-72.55,-300.0:29:99:441:15 0/0:0.0,-93.6,-300.0:28:99:489:14 0/0:0.0,-96.13,-300.0:28:99:539:9 0/0:0.0,-98.78,-300.0:30:99:631:12 0/0:0.0,-102.25,-300.0:28:99:714:12 0/0:0.0,-112.92,-300.0:25:99:679:10 0/0:0.0,-98.88,-300.0:26:99:526:16 0/0:0.0,-88.68,-300.0:27:99:726:12 0/0:0.0,-300.0,-300.0:28:99:2018:44 0/0:0.0,-69.09,-300.0:28:99:502:8 0/0:0.0,-164.96,-300.0:29:99:1177:24 0/0:0.0,-110.88,-300.0:28:99:704:19 0/0:0.0,-140.3,-300.0:29:99:961:17 0/0:0.0,-61.2,-300.0:29:99:434:9 0/0:0.0,-93.91,-300.0:27:99:677:9 0/0:0.0,-91.15,-300.0:30:99:602:11 0/0:0.0,-131.81,-300.0:28:99:826:15 0/0:0.0,-1.44,-152.77:26:15:93:3 1/0:-3.49,0.0,-163.24:23:35:105:2 0/0:0.0,-2.43,-156.3:27:24:92:0 1/0:-7.7,0.0,-197.76:28:77:124:6 1/0:-1.93,0.0,-185.2:37:19:115:1 0/0:0.0,-1.4,-171.79:32:14:108:1 1/0:-9.32,0.0,-237.29:25:93:139:2 1/0:-0.62,0.0,-201.38:37:7:128:3 1/0:-12.71,0.0,-209.62:30:99:124:1 0/0:0.0,-1.97,-260.86:26:20:141:5 1/0:-11.13,0.0,-275.57:26:99:151:3 1/0:-8.44,0.0,-275.59:27:84:156:8 1/0:-6.56,0.0,-238.55:26:66:140:7 0/0:0.0,-15.83,-229.47:29:99:119:3 1/0:-8.84,0.0,-210.3:33:88:113:4 1/0:-1.45,0.0,-167.44:30:15:109:4 1/0:-4.3,0.0,-153.51:22:43:88:3 0/0:0.0,-145.37,-300.0:33:99:740:15 0/0:0.0,-28.47,-300.0:39:99:423:6 0/0:0.0,-49.92,-300.0:39:99:545:8 0/0:0.0,-93.5,-300.0:40:99:903:20 chrXII 63981 . TC T 2418 QD;alleleBias BRF=0.03;FR=0.1744;HP=1;HapScore=1;MGOF=40;MMLQ=16;MQ=59.79;NF=264;NR=177;PP=2418;QD=5.58049886621;SC=GGAGTATTTATCAAAAAAAAA;SbPval=0.04;Source=Platypus;TC=19782;TCF=9986;TCR=9796;TR=441;WE=64025;WS=63950 GT:GL:GOF:GQ:NR:NV 1/0:-15.69,0.0,-300.0:25:99:226:1 0/0:0.0,-35.73,-300.0:3:99:149:13 0/0:0.0,-34.72,-300.0:2:99:122:7 0/0:0.0,-21.64,-191.38:2:99:71:4 1/0:-53.33,0.0,-300.0:29:99:254:1 0/0:0.0,-22.14,-210.95:2:99:82:4 0/0:0.0,-29.11,-274.76:3:99:102:7 0/0:0.0,-25.1,-224.37:3:99:88:8 1/0:-12.54,0.0,-187.8:24:99:121:4 0/0:0.0,-51.34,-300.0:29:99:567:15 0/0:0.0,-116.37,-300.0:31:99:729:14 0/0:0.0,-55.45,-300.0:29:99:445:15 0/0:0.0,-72.45,-300.0:28:99:489:13 0/0:0.0,-75.15,-300.0:28:99:544:9 0/0:0.0,-85.96,-300.0:30:99:625:12 0/0:0.0,-74.56,-300.0:28:99:712:12 0/0:0.0,-99.42,-300.0:25:99:674:10 0/0:0.0,-65.0,-300.0:26:99:527:17 0/0:0.0,-81.46,-300.0:27:99:724:12 0/0:0.0,-278.34,-300.0:28:99:2019:44 0/0:0.0,-55.95,-300.0:28:99:506:8 0/0:0.0,-156.9,-300.0:29:99:1168:24 0/0:0.0,-109.62,-300.0:28:99:700:19 0/0:0.0,-109.32,-300.0:29:99:957:17 0/0:0.0,-45.37,-300.0:29:99:436:9 0/0:0.0,-53.45,-300.0:27:99:675:9 0/0:0.0,-60.94,-300.0:30:99:603:11 0/0:0.0,-89.49,-300.0:28:99:824:15 0/0:0.0,-1.43,-134.87:26:14:92:3 1/0:-18.17,0.0,-119.98:23:99:103:2 0/0:0.0,-1.19,-131.48:27:12:88:0 1/0:-18.09,0.0,-170.04:28:99:123:6 1/0:-8.74,0.0,-155.92:37:87:115:1 1/0:-10.83,0.0,-145.17:32:99:108:1 1/0:-10.62,0.0,-201.88:25:99:138:2 1/0:-15.8,0.0,-167.44:37:99:129:3 1/0:-17.05,0.0,-176.86:30:99:124:1 1/0:-2.89,0.0,-203.04:26:29:141:5 1/0:-11.53,0.0,-239.09:26:99:149:3 1/0:-10.28,0.0,-246.2:27:99:157:8 1/0:-18.58,0.0,-199.29:26:99:140:7 0/0:0.0,-6.67,-184.01:29:67:119:3 1/0:-9.03,0.0,-186.57:33:90:111:4 1/0:-12.88,0.0,-138.76:30:99:108:4 1/0:-8.14,0.0,-135.53:22:81:87:3 0/0:0.0,-110.19,-300.0:33:99:746:15 0/0:0.0,-23.25,-300.0:39:99:422:6 0/0:0.0,-49.83,-300.0:39:99:544:8 0/0:0.0,-80.7,-300.0:40:99:899:22 chrXII 63982 . C CAA,CA 1063 badReads;QD;alleleBias BRF=0.03;FR=0.1515,0.0229;HP=15;HapScore=1;MGOF=40;MMLQ=14;MQ=59.8;NF=259,259;NR=185,185;PP=1063,25;QD=2.4009009009;SC=GAGTATTTATCAAAAAAAAAA;SbPval=0.02;Source=Platypus;TC=21906;TCF=10917;TCR=10989;TR=444,444;WE=64025;WS=63950 GT:GL:GOF:GQ:NR:NV 1/0:-1,-1,-1:25:53:254,254:1,1 0/0:-1,-1,-1:3:99:174,174:10,10 0/0:-1,-1,-1:2:99:149,149:7,7 0/0:-1,-1,-1:2:99:87,87:4,4 1/0:-1,-1,-1:29:99:286,286:1,1 0/0:-1,-1,-1:2:99:99,99:4,4 0/0:-1,-1,-1:3:99:111,111:6,6 0/0:-1,-1,-1:3:99:97,97:7,7 1/0:-1,-1,-1:24:99:130,130:4,4 0/0:-1,-1,-1:29:99:632,632:15,15 0/0:-1,-1,-1:31:99:789,789:15,15 0/0:-1,-1,-1:29:99:493,493:15,15 0/0:-1,-1,-1:28:99:540,540:13,13 0/0:-1,-1,-1:28:99:600,600:9,9 0/0:-1,-1,-1:30:99:696,696:14,14 0/0:-1,-1,-1:28:99:777,777:12,12 0/0:-1,-1,-1:25:99:767,767:9,9 0/0:-1,-1,-1:26:99:595,595:17,17 0/0:-1,-1,-1:27:99:800,800:11,11 0/0:-1,-1,-1:28:99:2249,2249:44,44 0/0:-1,-1,-1:28:99:564,564:8,8 0/0:-1,-1,-1:29:99:1283,1283:27,27 0/0:-1,-1,-1:28:99:773,773:20,20 0/0:-1,-1,-1:29:99:1066,1066:17,17 0/0:-1,-1,-1:29:99:495,495:9,9 0/0:-1,-1,-1:27:99:744,744:10,10 0/0:-1,-1,-1:30:99:651,651:11,11 0/0:-1,-1,-1:28:99:932,932:18,18 0/0:-1,-1,-1:26:14:96,96:3,3 1/0:-1,-1,-1:23:35:117,117:2,2 0/0:-1,-1,-1:27:12:90,90:0,0 1/0:-1,-1,-1:28:77:138,138:5,5 1/0:-1,-1,-1:37:19:125,125:1,1 2/0:-1,-1,-1:32:14:113,113:1,1 1/0:-1,-1,-1:25:93:149,149:2,2 1/0:-1,-1,-1:37:7:134,134:3,3 1/0:-1,-1,-1:30:99:141,141:1,1 2/0:-1,-1,-1:26:19:155,155:5,5 1/0:-1,-1,-1:26:99:161,161:3,3 1/0:-1,-1,-1:27:84:181,181:8,8 1/0:-1,-1,-1:26:66:151,151:7,7 0/0:-1,-1,-1:29:67:126,126:3,3 1/0:-1,-1,-1:33:88:122,122:4,4 1/0:-1,-1,-1:30:15:113,113:4,4 1/0:-1,-1,-1:22:43:99,99:3,3 0/0:-1,-1,-1:33:99:804,804:15,15 0/0:-1,-1,-1:39:99:461,461:6,6 0/0:-1,-1,-1:39:99:601,601:9,9 0/0:-1,-1,-1:40:99:996,996:21,21 chrXII 84532 . ATGTG TTTTT 2937 badReads;alleleBias BRF=0.02;FR=0.0204;HP=13;HapScore=1;MGOF=29;MMLQ=12;MQ=59.97;NF=108;NR=0;PP=2937;QD=20;SC=TTTTTTTTTTATGTGTGCAGA;SbPval=1.0;Source=Platypus;TC=21073;TCF=10924;TCR=10149;TR=108;WE=84544;WS=84521 GT:GL:GOF:GQ:NR:NV 0/1:-213.95,0.0,-300.0:29:99:340:41 0/0:0.0,-59.18,-300.0:1:99:215:0 0/0:0.0,-43.93,-300.0:1:99:154:0 0/0:0.0,-21.55,-300.0:2:99:78:0 0/1:-146.73,0.0,-300.0:28:99:371:37 0/0:0.0,-32.09,-300.0:3:99:108:0 0/0:0.0,-38.71,-300.0:2:99:138:1 0/0:0.0,-33.79,-300.0:1:99:118:0 0/0:0.0,-40.93,-300.0:15:99:152:0 0/0:0.0,-150.43,-300.0:25:99:559:1 0/0:0.0,-181.94,-300.0:24:99:636:1 0/0:0.0,-125.01,-300.0:27:99:472:3 0/0:0.0,-150.22,-300.0:24:99:507:0 0/0:0.0,-146.58,-300.0:24:99:531:3 0/0:0.0,-186.35,-300.0:23:99:635:0 0/0:0.0,-209.27,-300.0:22:99:729:1 0/0:0.0,-170.99,-300.0:26:99:596:0 0/0:0.0,-153.75,-300.0:25:99:539:0 0/0:0.0,-202.28,-300.0:25:99:708:1 0/0:0.0,-300.0,-300.0:26:99:1952:0 0/0:0.0,-143.38,-300.0:21:99:497:0 0/0:0.0,-300.0,-300.0:22:99:1132:2 0/0:0.0,-205.65,-300.0:27:99:699:1 0/0:0.0,-266.92,-300.0:26:99:978:3 0/0:0.0,-131.69,-300.0:28:99:448:0 0/0:0.0,-199.89,-300.0:20:99:702:1 0/0:0.0,-160.81,-300.0:23:99:575:0 0/0:0.0,-223.85,-300.0:25:99:802:3 0/0:0.0,-38.33,-300.0:14:99:128:0 0/0:0.0,-53.72,-300.0:16:99:173:0 0/0:0.0,-32.24,-300.0:16:99:127:1 0/0:0.0,-46.75,-300.0:17:99:173:1 0/0:0.0,-36.0,-300.0:14:99:153:2 0/0:0.0,-43.58,-300.0:13:99:164:1 0/0:0.0,-34.03,-300.0:20:99:121:0 0/0:0.0,-45.4,-300.0:18:99:151:0 0/0:0.0,-46.17,-300.0:13:99:146:0 0/0:0.0,-56.49,-300.0:14:99:199:0 0/0:0.0,-59.04,-300.0:21:99:208:1 0/0:0.0,-58.61,-300.0:13:99:207:0 0/0:0.0,-48.74,-300.0:16:99:191:0 0/0:0.0,-37.35,-300.0:15:99:142:1 0/0:0.0,-43.3,-300.0:14:99:144:0 0/0:0.0,-36.82,-300.0:13:99:145:0 0/0:0.0,-53.81,-300.0:19:99:180:0 0/0:0.0,-192.72,-300.0:24:99:645:0 0/0:0.0,-136.24,-300.0:23:99:516:2 0/0:0.0,-230.04,-300.0:26:99:770:0 0/0:0.0,-278.74,-300.0:25:99:1019:0 chrXII 86713 . C CA 768 QD;alleleBias BRF=0.04;FR=0.1584;HP=10;HapScore=1;MGOF=45;MMLQ=15;MQ=59.06;NF=348;NR=237;PP=768;QD=1.33675213675;SC=AAAGAAATTACAAAAAAAAAT;SbPval=0.54;Source=Platypus;TC=18544;TCF=10876;TCR=7668;TR=585;WE=86734;WS=86701 GT:GL:GOF:GQ:NR:NV 1/0:-11.26,0.0,-260.74:45:99:213:11 0/0:0.0,-25.21,-283.74:5:99:196:17 0/0:0.0,-8.94,-142.02:4:89:104:6 0/0:0.0,-6.08,-111.03:4:61:67:6 1/0:-11.47,0.0,-242.15:38:99:177:4 0/0:0.0,-19.67,-162.23:5:99:84:6 0/0:0.0,-25.28,-188.19:4:99:112:8 0/0:0.0,-8.78,-125.34:5:88:78:10 1/0:-7.31,0.0,-142.47:31:73:104:1 0/0:0.0,-41.28,-300.0:31:99:518:14 0/0:0.0,-56.42,-300.0:36:99:636:19 0/0:0.0,-26.39,-300.0:32:99:460:13 0/0:0.0,-54.61,-300.0:27:99:494:15 0/0:0.0,-76.44,-300.0:35:99:567:13 0/0:0.0,-41.81,-300.0:28:99:551:18 0/0:0.0,-61.43,-300.0:28:99:699:18 0/0:0.0,-67.72,-300.0:31:99:614:16 0/0:0.0,-44.84,-300.0:30:99:528:11 0/0:0.0,-51.65,-300.0:30:99:655:18 0/0:0.0,-225.32,-300.0:33:99:1804:63 0/0:0.0,-69.72,-300.0:33:99:492:17 0/0:0.0,-35.03,-300.0:35:99:1075:32 0/0:0.0,-64.47,-300.0:29:99:666:23 0/0:0.0,-48.48,-300.0:31:99:884:18 0/0:0.0,-52.34,-300.0:34:99:450:11 0/0:0.0,-23.52,-300.0:31:99:591:14 0/0:0.0,-58.37,-300.0:32:99:556:9 0/0:0.0,-93.52,-300.0:33:99:759:24 1/0:-6.14,0.0,-117.8:25:61:89:4 1/0:-6.85,0.0,-136.72:28:69:92:5 1/0:-1.84,0.0,-104.35:25:18:76:2 0/0:0.0,-7.47,-151.53:24:75:109:5 1/0:-1.0,0.0,-106.75:25:10:93:5 0/0:0.0,-3.81,-125.18:30:38:88:3 1/0:-2.03,0.0,-97.6:19:20:76:3 0/0:0.0,-3.52,-140.58:23:35:109:0 1/0:-4.72,0.0,-140.66:20:47:98:1 1/0:-5.05,0.0,-145.05:36:50:109:8 1/0:-4.81,0.0,-155.48:24:48:109:3 1/0:-11.3,0.0,-179.66:31:99:137:5 1/0:-3.77,0.0,-146.58:32:38:89:4 0/0:0.0,-0.61,-140.77:28:7:105:2 1/0:-3.03,0.0,-112.37:16:30:98:3 1/0:-4.56,0.0,-118.32:24:46:89:3 ./.:0.0,-0.1,-132.08:26:4:89:6 0/0:0.0,-91.24,-300.0:31:99:613:20 0/0:0.0,-55.49,-300.0:36:99:467:11 0/0:0.0,-48.17,-300.0:38:99:682:19 0/0:0.0,-88.03,-300.0:34:99:993:38 chrXII 86722 . ATT A 165 SC;QD;alleleBias BRF=0.04;FR=0.0481;HP=8;HapScore=1;MGOF=45;MMLQ=32;MQ=58.98;NF=352;NR=321;PP=165;QD=0.265973254086;SC=ACAAAAAAAAATTAAAAAAAA;SbPval=0.23;Source=Platypus;TC=19576;TCF=10454;TCR=9122;TR=673;WE=86734;WS=86701 GT:GL:GOF:GQ:NR:NV 1/0:-6.61,0.0,-268.24:45:66:239:11 0/0:0.0,-26.25,-294.42:5:99:201:23 0/0:0.0,-9.07,-142.02:4:91:118:7 0/0:0.0,-6.57,-111.03:4:66:74:7 1/0:-8.66,0.0,-236.61:38:87:208:5 0/0:0.0,-20.48,-162.23:5:99:92:8 0/0:0.0,-25.74,-193.03:4:99:116:9 0/0:0.0,-9.54,-125.43:5:95:77:10 0/0:0.0,-6.3,-145.43:31:63:115:3 0/0:0.0,-41.28,-300.0:31:99:546:16 0/0:0.0,-56.42,-300.0:36:99:672:20 0/0:0.0,-26.39,-300.0:32:99:478:15 0/0:0.0,-54.61,-300.0:27:99:537:17 0/0:0.0,-76.44,-300.0:35:99:586:16 0/0:0.0,-41.81,-300.0:28:99:588:18 0/0:0.0,-61.43,-300.0:28:99:726:21 0/0:0.0,-67.72,-300.0:31:99:650:17 0/0:0.0,-44.84,-300.0:30:99:559:13 0/0:0.0,-51.65,-300.0:30:99:716:20 0/0:0.0,-225.32,-300.0:33:99:1866:70 0/0:0.0,-69.8,-300.0:33:99:486:21 0/0:0.0,-38.46,-300.0:35:99:1152:34 0/0:0.0,-64.47,-300.0:29:99:695:24 0/0:0.0,-48.48,-300.0:31:99:921:20 0/0:0.0,-52.34,-300.0:34:99:453:11 0/0:0.0,-23.52,-300.0:31:99:629:19 0/0:0.0,-58.37,-300.0:32:99:572:10 0/0:0.0,-93.52,-300.0:33:99:786:27 1/0:-2.39,0.0,-117.8:25:24:107:5 0/0:0.0,-6.06,-140.72:28:61:117:9 0/0:0.0,-2.47,-105.42:25:25:76:2 0/0:0.0,-7.5,-151.53:24:75:126:6 0/0:0.0,-0.78,-107.56:25:8:91:7 0/0:0.0,-3.95,-125.18:30:40:98:4 0/0:0.0,-5.11,-103.09:19:51:89:3 0/0:0.0,-3.52,-140.58:23:35:116:0 0/0:0.0,-2.11,-140.84:20:21:115:2 0/0:0.0,-2.6,-146.27:36:26:130:12 0/0:0.0,-2.5,-157.64:24:25:121:3 0/0:0.0,-12.18,-191.33:31:99:140:6 0/0:0.0,-1.27,-146.58:32:13:104:4 0/0:0.0,-1.15,-140.83:28:12:101:3 1/0:-1.9,0.0,-112.41:16:19:98:5 0/0:0.0,-5.97,-124.53:24:60:114:5 ./.:0.0,-0.1,-132.08:26:4:114:8 0/0:0.0,-91.24,-300.0:31:99:634:23 0/0:0.0,-55.65,-300.0:36:99:485:11 0/0:0.0,-62.83,-300.0:38:99:705:22 0/0:0.0,-88.06,-300.0:34:99:1037:41 chrXII 86723 . TT AA,AT 317 SC;badReads;QD;alleleBias BRF=0.04;FR=0.1104,0.0557;HP=9;HapScore=1;MGOF=45;MMLQ=14;MQ=58.96;NF=2,84;NR=859,1760;PP=317,118;QD=0.430276277424;SC=CAAAAAAAAATTAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=19989;TCF=10749;TCR=9240;TR=861,1844;WE=86734;WS=86701 GT:GL:GOF:GQ:NR:NV 1/0:-1,-1,-1:45:99:244,244:56,62 0/0:-1,-1,-1:5:99:196,196:6,29 2/0:-1,-1,-1:4:18:121,121:5,31 0/0:-1,-1,-1:4:57:74,74:3,13 1/0:-1,-1,-1:38:99:218,218:47,55 0/0:-1,-1,-1:5:99:95,95:2,11 0/0:-1,-1,-1:4:99:121,121:1,17 0/0:-1,-1,-1:5:86:80,80:4,11 1/0:-1,-1,-1:31:99:117,117:12,24 0/0:-1,-1,-1:31:99:558,558:18,31 0/0:-1,-1,-1:36:99:690,690:23,52 0/0:-1,-1,-1:32:99:491,491:23,40 0/0:-1,-1,-1:27:99:542,542:17,32 0/0:-1,-1,-1:35:99:594,594:11,29 0/0:-1,-1,-1:29:99:600,600:24,46 0/0:-1,-1,-1:28:99:747,747:25,54 0/0:-1,-1,-1:31:99:659,659:26,43 0/0:-1,-1,-1:30:99:585,585:24,43 0/0:-1,-1,-1:30:99:750,750:30,51 0/0:-1,-1,-1:33:99:1890,1890:41,110 0/0:-1,-1,-1:33:99:503,503:9,29 0/0:-1,-1,-1:35:99:1170,1170:55,104 0/0:-1,-1,-1:29:99:708,708:21,41 0/0:-1,-1,-1:31:99:934,934:34,68 0/0:-1,-1,-1:34:99:457,457:12,26 0/0:-1,-1,-1:31:99:652,652:28,43 0/0:-1,-1,-1:32:99:579,579:16,42 0/0:-1,-1,-1:33:99:799,799:25,58 1/0:-1,-1,-1:25:99:110,110:18,36 1/0:-1,-1,-1:28:99:132,132:15,31 1/0:-1,-1,-1:25:18:80,80:5,17 2/0:-1,-1,-1:24:87:125,125:7,31 1/0:-1,-1,-1:25:10:95,95:4,16 2/0:-1,-1,-1:30:44:98,98:9,25 1/0:-1,-1,-1:19:20:89,89:8,23 2/0:-1,-1,-1:23:56:119,119:11,32 1/0:-1,-1,-1:20:99:115,115:14,28 1/0:-1,-1,-1:36:99:131,131:14,34 1/0:-1,-1,-1:24:75:120,120:13,28 1/0:-1,-1,-1:31:99:141,141:10,28 1/0:-1,-1,-1:32:51:107,107:6,19 2/0:-1,-1,-1:28:8:99,99:3,14 1/0:-1,-1,-1:16:11:95,95:7,19 1/0:-1,-1,-1:24:46:116,116:13,35 2/0:-1,-1,-1:26:28:117,117:12,30 0/0:-1,-1,-1:31:99:640,640:19,42 0/0:-1,-1,-1:36:99:497,497:11,26 0/0:-1,-1,-1:38:99:722,722:27,60 0/0:-1,-1,-1:34:99:1067,1067:37,75 chrXII 86724 . T TA 3000 SC;badReads;alleleBias BRF=0.04;FR=0.1584;HP=17;HapScore=1;MGOF=45;MMLQ=13;MQ=59.02;NF=344;NR=334;PP=3000;QD=20;SC=AAAAAAAAATTAAAAAAAAAA;SbPval=0.71;Source=Platypus;TC=20121;TCF=10690;TCR=9431;TR=678;WE=86734;WS=86701 GT:GL:GOF:GQ:NR:NV 1/0:-116.05,0.0,-164.06:45:99:245:11 0/0:0.0,-25.21,-156.91:5:99:210:22 0/0:0.0,-8.94,-91.27:4:89:122:7 0/0:0.0,-6.08,-72.73:4:61:73:6 1/0:-97.34,0.0,-143.11:38:99:213:6 0/0:0.0,-19.67,-101.7:5:99:91:8 0/0:0.0,-25.28,-122.3:4:99:122:8 0/0:0.0,-8.78,-82.11:5:88:77:10 1/0:-16.46,0.0,-81.74:31:99:112:4 0/0:0.0,-41.28,-300.0:31:99:557:16 0/0:0.0,-56.42,-300.0:36:99:697:19 0/0:0.0,-26.39,-300.0:32:99:494:15 0/0:0.0,-54.61,-300.0:27:99:568:16 0/0:0.0,-76.44,-300.0:36:99:608:17 0/0:0.0,-41.81,-300.0:28:99:609:19 0/0:0.0,-61.43,-300.0:28:99:759:25 0/0:0.0,-67.72,-300.0:31:99:677:17 0/0:0.0,-44.84,-300.0:30:99:557:13 0/0:0.0,-51.65,-300.0:30:99:731:20 0/0:0.0,-225.32,-300.0:33:99:1946:73 0/0:0.0,-69.72,-300.0:33:99:492:22 0/0:0.0,-35.03,-300.0:35:99:1189:32 0/0:0.0,-64.47,-300.0:29:99:698:24 0/0:0.0,-48.48,-300.0:31:99:952:20 0/0:0.0,-52.34,-300.0:34:99:464:11 0/0:0.0,-23.52,-300.0:31:99:646:18 0/0:0.0,-58.37,-300.0:32:99:587:9 0/0:0.0,-93.52,-300.0:33:99:809:30 1/0:-14.09,0.0,-82.21:25:99:109:5 1/0:-17.49,0.0,-83.43:28:99:116:9 1/0:-1.84,0.0,-66.41:25:18:77:2 0/0:0.0,-7.47,-90.92:24:75:135:6 1/0:-1.0,0.0,-62.48:25:10:96:7 0/0:0.0,-3.81,-75.23:30:38:97:4 1/0:-2.03,0.0,-66.69:19:20:95:3 0/0:0.0,-3.52,-87.77:23:35:118:0 1/0:-10.44,0.0,-86.49:20:99:117:2 1/0:-10.67,0.0,-86.92:36:99:132:12 1/0:-7.45,0.0,-89.5:24:75:120:3 1/0:-14.32,0.0,-106.03:31:99:142:6 1/0:-5.08,0.0,-91.16:32:51:107:4 0/0:0.0,-0.61,-79.51:28:7:101:3 1/0:-3.03,0.0,-68.5:16:30:100:5 1/0:-4.56,0.0,-77.22:24:46:115:5 ./.:0.0,-0.1,-82.56:26:4:115:9 0/0:0.0,-91.24,-300.0:31:99:640:21 0/0:0.0,-55.49,-300.0:36:99:498:11 0/0:0.0,-48.17,-300.0:38:99:719:22 0/0:0.0,-88.03,-300.0:34:99:1067:41 chrXII 86741 . AC A 287 SC;QD;alleleBias BRF=0.04;FR=0.0853;HP=16;HapScore=1;MGOF=54;MMLQ=26;MQ=59.2;NF=356;NR=347;PP=287;QD=0.412517780939;SC=AAAAAAAAAAACAATCAAAAA;SbPval=0.23;Source=Platypus;TC=19241;TCF=10586;TCR=8655;TR=703;WE=86778;WS=86726 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-53.87,-300.0:54:99:239:11 0/0:0.0,-27.04,-300.0:5:99:195:23 0/0:0.0,-21.16,-300.0:4:99:118:6 0/0:0.0,-12.31,-155.26:4:99:67:6 0/0:0.0,-39.17,-300.0:45:99:217:6 0/0:0.0,-7.71,-201.86:5:77:92:8 0/0:0.0,-21.33,-300.0:3:99:131:9 0/0:0.0,-16.32,-197.16:5:99:78:10 0/0:0.0,-0.28,-204.26:36:5:95:6 0/0:0.0,-135.46,-300.0:34:99:538:18 0/0:0.0,-164.62,-300.0:37:99:682:20 0/0:0.0,-117.69,-300.0:35:99:473:16 0/0:0.0,-137.45,-300.0:29:99:554:16 0/0:0.0,-154.71,-300.0:36:99:588:18 0/0:0.0,-136.15,-300.0:33:99:575:20 0/0:0.0,-157.58,-300.0:32:99:727:26 0/0:0.0,-157.97,-300.0:34:99:632:18 0/0:0.0,-132.37,-300.0:33:99:548:15 0/0:0.0,-172.07,-300.0:33:99:695:18 0/0:0.0,-300.0,-300.0:36:99:1867:74 0/0:0.0,-109.04,-300.0:35:99:481:23 0/0:0.0,-282.43,-300.0:35:99:1161:35 0/0:0.0,-153.8,-300.0:34:99:687:23 0/0:0.0,-209.34,-300.0:33:99:910:21 0/0:0.0,-116.97,-300.0:34:99:472:12 0/0:0.0,-139.96,-300.0:33:99:630:17 0/0:0.0,-129.64,-300.0:33:99:561:10 0/0:0.0,-192.56,-300.0:35:99:810:35 0/0:0.0,-7.64,-236.26:29:76:97:4 1/0:-5.59,0.0,-221.55:31:56:106:8 0/0:0.0,-0.58,-129.96:29:7:58:2 0/0:0.0,-8.98,-246.86:27:90:105:6 1/0:-4.19,0.0,-154.65:24:42:73:7 0/0:0.0,-3.11,-171.96:30:31:78:5 0/0:0.0,-7.89,-185.36:24:79:77:3 1/0:-4.94,0.0,-209.0:28:49:100:1 1/0:-4.82,0.0,-222.58:23:48:104:2 0/0:0.0,-11.49,-283.86:40:99:115:12 1/0:-4.14,0.0,-210.1:28:41:100:3 1/0:-0.61,0.0,-280.77:34:7:132:6 1/0:-5.38,0.0,-210.84:31:54:99:5 1/0:-2.46,0.0,-179.02:29:25:89:3 0/0:0.0,-6.1,-181.96:18:61:80:4 0/0:0.0,-10.2,-233.66:26:99:96:5 0/0:0.0,-11.45,-239.66:27:99:100:9 0/0:0.0,-140.86,-300.0:34:99:607:22 0/0:0.0,-111.15,-300.0:39:99:474:12 0/0:0.0,-170.76,-300.0:39:99:705:21 0/0:0.0,-239.45,-300.0:36:99:1023:43 chrXII 86742 . C CA 223 SC;QD;alleleBias BRF=0.04;FR=0.0853;HP=19;HapScore=1;MGOF=54;MMLQ=29;MQ=59.44;NF=351;NR=343;PP=223;QD=0.413322421428;SC=AAAAAAAAAACAATCAAAAAA;SbPval=0.23;Source=Platypus;TC=19401;TCF=10636;TCR=8765;TR=694;WE=86778;WS=86726 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-53.87,-300.0:54:99:240:11 0/0:0.0,-27.04,-300.0:5:99:193:23 0/0:0.0,-21.16,-300.0:4:99:123:6 0/0:0.0,-12.31,-155.26:4:99:68:6 0/0:0.0,-39.17,-300.0:45:99:221:6 0/0:0.0,-7.71,-201.86:5:77:93:8 0/0:0.0,-21.33,-300.0:3:99:132:9 0/0:0.0,-16.32,-197.16:5:99:78:10 0/0:0.0,-0.28,-204.26:36:5:98:6 0/0:0.0,-135.46,-300.0:34:99:542:18 0/0:0.0,-164.62,-300.0:37:99:686:20 0/0:0.0,-117.69,-300.0:35:99:479:16 0/0:0.0,-137.45,-300.0:29:99:557:15 0/0:0.0,-154.71,-300.0:36:99:584:18 0/0:0.0,-136.15,-300.0:33:99:578:19 0/0:0.0,-157.58,-300.0:32:99:721:24 0/0:0.0,-157.97,-300.0:34:99:634:18 0/0:0.0,-132.37,-300.0:33:99:554:15 0/0:0.0,-172.07,-300.0:33:99:700:18 0/0:0.0,-300.0,-300.0:36:99:1886:72 0/0:0.0,-109.04,-300.0:35:99:486:22 0/0:0.0,-282.43,-300.0:35:99:1174:35 0/0:0.0,-153.8,-300.0:34:99:693:23 0/0:0.0,-209.34,-300.0:33:99:909:20 0/0:0.0,-116.97,-300.0:34:99:480:11 0/0:0.0,-139.96,-300.0:33:99:628:17 0/0:0.0,-129.64,-300.0:33:99:565:10 0/0:0.0,-192.56,-300.0:35:99:822:36 0/0:0.0,-7.64,-236.26:29:76:97:4 1/0:-5.59,0.0,-221.55:31:56:105:8 0/0:0.0,-0.58,-129.96:29:7:58:2 0/0:0.0,-8.98,-246.86:27:90:108:5 1/0:-4.19,0.0,-154.65:24:42:74:7 0/0:0.0,-3.11,-171.96:30:31:79:4 0/0:0.0,-7.89,-185.36:24:79:79:3 1/0:-4.94,0.0,-209.0:28:49:102:1 1/0:-4.82,0.0,-222.58:23:48:104:2 0/0:0.0,-11.49,-283.86:40:99:114:11 1/0:-4.14,0.0,-210.1:28:41:105:3 1/0:-0.61,0.0,-280.77:34:7:137:6 1/0:-5.38,0.0,-210.84:31:54:103:5 1/0:-2.46,0.0,-179.02:29:25:90:3 0/0:0.0,-6.1,-181.96:18:61:87:4 0/0:0.0,-10.2,-233.66:26:99:89:5 0/0:0.0,-11.45,-239.66:27:99:101:10 0/0:0.0,-140.86,-300.0:34:99:618:22 0/0:0.0,-111.15,-300.0:39:99:486:13 0/0:0.0,-170.76,-300.0:39:99:707:21 0/0:0.0,-239.45,-300.0:36:99:1034:43 chrXII 105613 . AGTT A 64 badReads;QD;alleleBias BRF=0.03;FR=0.0109;HP=2;HapScore=1;MGOF=48;MMLQ=12;MQ=59.92;NF=229;NR=222;PP=64;QD=0.215077605322;SC=GAAAAAGAAGAGTTAAAAAAA;SbPval=0.05;Source=Platypus;TC=21736;TCF=12240;TCR=9496;TR=451;WE=105625;WS=105573 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-1.17,-300.0:44:12:333:5 0/0:0.0,-48.81,-300.0:3:99:157:14 0/0:0.0,-33.21,-300.0:3:99:108:6 0/0:0.0,-28.91,-282.22:3:99:91:2 1/0:-10.15,0.0,-300.0:34:99:332:9 0/0:0.0,-27.85,-276.92:4:99:86:4 0/0:0.0,-39.82,-300.0:4:99:131:11 0/0:0.0,-35.23,-300.0:4:99:114:5 0/0:0.0,-52.8,-300.0:38:99:187:4 0/0:0.0,-135.35,-300.0:25:99:574:8 0/0:0.0,-158.33,-300.0:30:99:745:18 0/0:0.0,-130.58,-300.0:28:99:529:3 0/0:0.0,-130.17,-300.0:26:99:567:12 0/0:0.0,-144.81,-300.0:28:99:605:9 0/0:0.0,-142.79,-300.0:28:99:634:12 0/0:0.0,-179.46,-300.0:24:99:722:19 0/0:0.0,-144.83,-300.0:25:99:620:13 0/0:0.0,-159.96,-300.0:27:99:627:12 0/0:0.0,-156.03,-300.0:27:99:723:7 0/0:0.0,-300.0,-300.0:27:99:2076:31 0/0:0.0,-138.42,-300.0:25:99:555:12 0/0:0.0,-245.13,-300.0:30:99:1231:22 0/0:0.0,-157.38,-300.0:28:99:690:17 0/0:0.0,-256.36,-300.0:30:99:1096:27 0/0:0.0,-119.05,-300.0:30:99:454:12 0/0:0.0,-145.36,-300.0:30:99:686:13 0/0:0.0,-145.43,-300.0:27:99:608:8 0/0:0.0,-211.77,-300.0:27:99:883:12 0/0:0.0,-23.48,-282.22:28:99:96:3 0/0:0.0,-44.68,-300.0:35:99:159:5 0/0:0.0,-25.74,-300.0:33:99:107:2 0/0:0.0,-42.28,-300.0:37:99:157:4 0/0:0.0,-33.7,-300.0:37:99:144:2 0/0:0.0,-41.67,-300.0:28:99:136:4 0/0:0.0,-30.41,-300.0:32:99:104:4 0/0:0.0,-38.47,-300.0:34:99:165:7 0/0:0.0,-36.73,-300.0:40:99:148:5 0/0:0.0,-58.18,-300.0:29:99:190:5 0/0:0.0,-50.9,-300.0:29:99:186:5 0/0:0.0,-49.07,-300.0:31:99:209:5 0/0:0.0,-41.56,-300.0:30:99:150:2 0/0:0.0,-32.19,-300.0:33:99:135:5 0/0:0.0,-38.0,-300.0:30:99:119:5 0/0:0.0,-34.8,-300.0:48:99:115:6 0/0:0.0,-35.7,-300.0:30:99:126:4 0/0:0.0,-175.77,-300.0:26:99:766:7 0/0:0.0,-115.45,-300.0:29:99:521:4 0/0:0.0,-156.32,-300.0:32:99:759:17 0/0:0.0,-226.63,-300.0:34:99:1080:23 chrXII 105616 . T TAA 95 badReads;QD;alleleBias BRF=0.03;FR=0.0109;HP=14;HapScore=1;MGOF=48;MMLQ=12;MQ=59.92;NF=214;NR=225;PP=95;QD=0.225512528474;SC=AAAGAAGAGTTAAAAAAAAAA;SbPval=0.06;Source=Platypus;TC=22135;TCF=12170;TCR=9965;TR=439;WE=105625;WS=105573 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-1.17,-300.0:44:12:343:5 0/0:0.0,-48.81,-251.69:3:99:148:9 0/0:0.0,-33.21,-191.16:3:99:101:6 0/0:0.0,-28.91,-168.15:3:99:81:2 1/0:-10.15,0.0,-300.0:34:99:336:7 0/0:0.0,-27.85,-169.8:4:99:85:4 0/0:0.0,-39.82,-205.12:4:99:115:9 0/0:0.0,-35.23,-196.89:4:99:105:3 0/0:0.0,-52.8,-300.0:39:99:194:4 0/0:0.0,-135.35,-300.0:26:99:584:8 0/0:0.0,-158.33,-300.0:31:99:777:16 0/0:0.0,-130.58,-300.0:28:99:532:3 0/0:0.0,-130.17,-300.0:26:99:575:12 0/0:0.0,-144.81,-300.0:29:99:619:9 0/0:0.0,-142.79,-300.0:29:99:644:12 0/0:0.0,-179.46,-300.0:25:99:738:19 0/0:0.0,-144.83,-300.0:25:99:633:13 0/0:0.0,-159.96,-300.0:28:99:635:12 0/0:0.0,-156.03,-300.0:27:99:739:8 0/0:0.0,-300.0,-300.0:27:99:2114:31 0/0:0.0,-138.42,-300.0:26:99:564:12 0/0:0.0,-245.13,-300.0:30:99:1249:21 0/0:0.0,-157.38,-300.0:28:99:708:17 0/0:0.0,-256.36,-300.0:30:99:1118:27 0/0:0.0,-119.05,-300.0:31:99:460:12 0/0:0.0,-145.36,-300.0:31:99:696:13 0/0:0.0,-145.43,-300.0:28:99:613:9 0/0:0.0,-211.77,-300.0:27:99:912:11 0/0:0.0,-23.48,-178.45:28:99:93:3 0/0:0.0,-44.68,-291.21:35:99:167:5 0/0:0.0,-25.74,-212.1:33:99:109:2 0/0:0.0,-42.28,-279.34:37:99:157:4 0/0:0.0,-33.7,-268.61:37:99:150:2 0/0:0.0,-41.67,-246.79:29:99:138:4 0/0:0.0,-30.41,-204.18:32:99:108:4 0/0:0.0,-38.47,-288.04:34:99:175:7 0/0:0.0,-36.73,-274.17:40:99:159:5 0/0:0.0,-58.18,-300.0:29:99:198:5 0/0:0.0,-50.9,-300.0:30:99:186:5 0/0:0.0,-49.07,-300.0:32:99:209:5 0/0:0.0,-41.56,-279.0:30:99:151:2 0/0:0.0,-32.19,-251.25:33:99:142:5 0/0:0.0,-38.0,-235.16:31:99:122:5 0/0:0.0,-34.8,-235.72:48:99:121:6 0/0:0.0,-35.7,-244.45:30:99:141:4 0/0:0.0,-175.77,-300.0:27:99:793:7 0/0:0.0,-115.45,-300.0:30:99:534:4 0/0:0.0,-156.32,-300.0:33:99:766:19 0/0:0.0,-226.63,-300.0:34:99:1098:22 chrXII 108039 . TC T 186 SC;QD;alleleBias BRF=0.03;FR=0.0408;HP=4;HapScore=1;MGOF=31;MMLQ=34;MQ=59.9;NF=134;NR=181;PP=186;QD=0.653968253968;SC=GTTTCCTTTTTCTTTTTCTTT;SbPval=0.53;Source=Platypus;TC=19662;TCF=9492;TCR=10170;TR=315;WE=108069;WS=107991 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-74.26,-300.0:24:99:276:4 0/0:0.0,-47.1,-300.0:2:99:191:9 0/0:0.0,-41.98,-300.0:1:99:149:9 0/0:0.0,-26.05,-255.01:2:99:86:1 0/0:0.0,-56.15,-300.0:23:99:294:3 0/0:0.0,-31.56,-300.0:1:99:108:5 0/0:0.0,-44.24,-300.0:2:99:154:7 0/0:0.0,-26.93,-300.0:1:99:102:3 0/1:-2.5,0.0,-300.0:19:25:128:5 0/0:0.0,-131.38,-300.0:19:99:483:6 0/0:0.0,-154.12,-300.0:22:99:609:8 0/0:0.0,-130.8,-300.0:25:99:427:5 0/0:0.0,-137.77,-300.0:21:99:512:9 0/0:0.0,-156.71,-300.0:24:99:531:6 0/0:0.0,-154.91,-300.0:23:99:566:13 0/0:0.0,-187.0,-300.0:22:99:667:12 0/0:0.0,-159.39,-300.0:19:99:582:10 0/0:0.0,-142.58,-300.0:19:99:495:3 0/0:0.0,-196.02,-300.0:17:99:688:8 0/0:0.0,-300.0,-300.0:20:99:1783:27 0/0:0.0,-130.27,-300.0:18:99:461:10 0/0:0.0,-300.0,-300.0:20:99:1104:11 0/0:0.0,-190.15,-300.0:22:99:642:8 0/0:0.0,-251.27,-300.0:21:99:874:14 0/0:0.0,-113.5,-300.0:21:99:410:4 0/0:0.0,-159.7,-300.0:17:99:562:11 0/0:0.0,-177.33,-300.0:23:99:639:12 0/0:0.0,-224.16,-300.0:19:99:743:8 0/1:-10.0,0.0,-276.26:16:99:124:1 0/0:0.0,-14.94,-300.0:31:99:153:4 0/0:0.0,-14.07,-300.0:23:99:130:3 0/0:0.0,-16.47,-300.0:22:99:146:2 0/0:0.0,-25.07,-300.0:19:99:130:1 0/0:0.0,-7.17,-300.0:22:72:140:3 0/1:-5.5,0.0,-214.49:20:55:98:2 0/0:0.0,-15.65,-300.0:21:99:144:4 0/0:0.0,-16.29,-300.0:25:99:147:2 0/0:0.0,-15.4,-300.0:22:99:166:1 0/0:0.0,-2.93,-300.0:25:29:147:3 0/0:0.0,-23.92,-300.0:26:99:210:6 0/0:0.0,-12.65,-300.0:23:99:151:2 0/0:0.0,-19.98,-300.0:23:99:131:3 0/0:0.0,-4.36,-220.29:18:44:96:4 0/0:0.0,-12.72,-300.0:19:99:181:5 0/1:-4.33,0.0,-300.0:27:43:167:2 0/0:0.0,-174.21,-300.0:20:99:607:6 0/0:0.0,-117.27,-300.0:23:99:487:8 0/0:0.0,-195.97,-300.0:27:99:737:11 0/0:0.0,-300.0,-300.0:23:99:1104:11 chrXII 108045 . TC T 186 SC;QD;alleleBias BRF=0.03;FR=0.0408;HP=4;HapScore=1;MGOF=31;MMLQ=34;MQ=59.89;NF=136;NR=187;PP=186;QD=0.637770897833;SC=TTTTTCTTTTTCTTTTTTTTT;SbPval=0.63;Source=Platypus;TC=19541;TCF=9507;TCR=10034;TR=323;WE=108069;WS=107991 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-74.26,-300.0:24:99:278:3 0/0:0.0,-47.1,-300.0:2:99:192:9 0/0:0.0,-41.98,-300.0:1:99:146:9 0/0:0.0,-26.05,-203.29:2:99:83:1 0/0:0.0,-56.15,-300.0:23:99:290:3 0/0:0.0,-31.56,-242.31:1:99:105:5 0/0:0.0,-44.24,-300.0:2:99:148:7 0/0:0.0,-26.93,-232.59:1:99:99:3 0/1:-2.5,0.0,-243.64:19:25:136:5 0/0:0.0,-131.38,-300.0:19:99:472:6 0/0:0.0,-154.12,-300.0:22:99:596:8 0/0:0.0,-130.8,-300.0:25:99:421:6 0/0:0.0,-137.77,-300.0:21:99:508:9 0/0:0.0,-156.71,-300.0:24:99:531:6 0/0:0.0,-154.91,-300.0:23:99:559:13 0/0:0.0,-187.0,-300.0:22:99:663:12 0/0:0.0,-159.39,-300.0:19:99:583:11 0/0:0.0,-142.58,-300.0:19:99:489:4 0/0:0.0,-196.02,-300.0:17:99:680:8 0/0:0.0,-300.0,-300.0:20:99:1778:28 0/0:0.0,-130.27,-300.0:18:99:461:10 0/0:0.0,-300.0,-300.0:20:99:1086:11 0/0:0.0,-190.15,-300.0:22:99:646:9 0/0:0.0,-251.27,-300.0:21:99:864:14 0/0:0.0,-113.5,-300.0:21:99:412:4 0/0:0.0,-159.7,-300.0:17:99:558:11 0/0:0.0,-177.33,-300.0:23:99:630:12 0/0:0.0,-224.16,-300.0:19:99:728:8 0/1:-10.0,0.0,-212.15:16:99:131:2 0/0:0.0,-14.94,-280.99:31:99:152:4 0/0:0.0,-14.07,-234.84:23:99:126:3 0/0:0.0,-16.47,-282.18:22:99:147:2 0/0:0.0,-25.07,-259.61:19:99:131:1 0/0:0.0,-7.17,-256.16:22:72:144:3 0/1:-5.5,0.0,-175.96:20:55:97:2 0/0:0.0,-15.65,-263.15:21:99:148:6 0/0:0.0,-16.29,-281.94:25:99:147:2 0/0:0.0,-15.4,-293.28:22:99:170:1 0/0:0.0,-2.93,-251.23:25:29:147:3 0/0:0.0,-23.92,-300.0:26:99:211:7 0/0:0.0,-12.65,-272.16:23:99:147:2 0/0:0.0,-19.98,-249.73:23:99:129:3 0/0:0.0,-4.36,-188.41:18:44:99:4 0/0:0.0,-12.72,-300.0:19:99:182:5 0/1:-4.33,0.0,-278.76:27:43:162:2 0/0:0.0,-174.21,-300.0:20:99:600:6 0/0:0.0,-117.27,-300.0:23:99:495:8 0/0:0.0,-195.97,-300.0:27:99:744:11 0/0:0.0,-300.0,-300.0:23:99:1090:11 chrXII 108046 . C CTT 201 SC;badReads;QD;alleleBias BRF=0.03;FR=0.0408;HP=17;HapScore=1;MGOF=31;MMLQ=14;MQ=59.9;NF=130;NR=188;PP=201;QD=0.650943396226;SC=TTTTCTTTTTCTTTTTTTTTT;SbPval=0.66;Source=Platypus;TC=21222;TCF=10293;TCR=10929;TR=318;WE=108069;WS=107991 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-74.26,-300.0:24:99:299:3 0/0:0.0,-47.1,-300.0:2:99:205:9 0/0:0.0,-41.98,-247.1:1:99:153:8 0/0:0.0,-26.05,-170.53:2:99:91:1 0/0:0.0,-56.15,-300.0:23:99:322:4 0/0:0.0,-31.56,-193.09:1:99:117:5 0/0:0.0,-44.24,-275.13:2:99:160:7 0/0:0.0,-26.93,-190.18:1:99:110:2 0/1:-2.5,0.0,-205.77:19:25:160:6 0/0:0.0,-131.38,-300.0:19:99:505:6 0/0:0.0,-154.12,-300.0:23:99:657:9 0/0:0.0,-130.8,-300.0:26:99:445:6 0/0:0.0,-137.77,-300.0:21:99:529:8 0/0:0.0,-156.71,-300.0:25:99:576:4 0/0:0.0,-154.91,-300.0:24:99:611:13 0/0:0.0,-187.0,-300.0:22:99:726:12 0/0:0.0,-159.39,-300.0:20:99:641:11 0/0:0.0,-142.58,-300.0:19:99:534:4 0/0:0.0,-196.02,-300.0:17:99:722:7 0/0:0.0,-300.0,-300.0:21:99:1901:28 0/0:0.0,-130.27,-300.0:19:99:491:10 0/0:0.0,-300.0,-300.0:20:99:1154:11 0/0:0.0,-190.15,-300.0:22:99:699:8 0/0:0.0,-251.26,-300.0:21:99:940:14 0/0:0.0,-113.5,-300.0:22:99:445:4 0/0:0.0,-159.7,-300.0:18:99:605:11 0/0:0.0,-177.33,-300.0:23:99:669:12 0/0:0.0,-223.81,-300.0:20:99:791:8 0/1:-10.0,0.0,-197.72:16:99:145:2 0/0:0.0,-14.94,-247.91:31:99:165:4 0/0:0.0,-14.07,-211.48:23:99:147:3 0/0:0.0,-16.47,-258.51:22:99:178:2 0/0:0.0,-25.07,-227.07:19:99:155:1 0/0:0.0,-7.17,-226.69:22:72:161:3 0/1:-5.5,0.0,-158.55:20:55:112:2 0/0:0.0,-15.65,-245.84:21:99:180:6 0/0:0.0,-16.29,-253.26:25:99:166:2 0/0:0.0,-15.4,-270.12:22:99:194:1 0/0:0.0,-2.93,-233.6:25:29:172:3 0/0:0.0,-23.92,-300.0:26:99:230:7 0/0:0.0,-12.65,-246.85:23:99:162:2 0/0:0.0,-19.98,-216.22:23:99:144:3 0/0:0.0,-4.36,-161.86:18:44:118:4 0/0:0.0,-12.72,-290.65:19:99:204:5 0/1:-4.33,0.0,-246.25:27:43:175:2 0/0:0.0,-174.21,-300.0:20:99:639:6 0/0:0.0,-117.27,-300.0:23:99:527:7 0/0:0.0,-195.97,-300.0:27:99:800:12 0/0:0.0,-300.0,-300.0:23:99:1190:10 chrXII 112174 . GT G 762 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=3;HapScore=1;MGOF=29;MMLQ=12;MQ=59.94;NF=164;NR=162;PP=762;QD=2.46932515337;SC=ATATAACAAAGTGAAAAAAAA;SbPval=0.19;Source=Platypus;TC=19786;TCF=10514;TCR=9272;TR=326;WE=112201;WS=112124 GT:GL:GOF:GQ:NR:NV 1/0:-33.37,0.0,-300.0:29:99:322:5 0/0:0.0,-55.33,-300.0:2:99:195:8 0/0:0.0,-39.68,-300.0:1:99:130:10 0/0:0.0,-22.93,-300.0:2:99:71:3 1/0:-47.98,0.0,-300.0:25:99:291:5 0/0:0.0,-29.04,-300.0:1:99:94:5 0/0:0.0,-36.69,-300.0:2:99:134:5 0/0:0.0,-29.61,-300.0:2:99:102:1 0/0:0.0,-51.72,-300.0:17:99:199:6 0/0:0.0,-134.31,-300.0:23:99:528:5 0/0:0.0,-203.68,-300.0:23:99:765:13 0/0:0.0,-120.82,-300.0:23:99:444:5 0/0:0.0,-120.19,-300.0:21:99:451:4 0/0:0.0,-132.82,-300.0:26:99:509:6 0/0:0.0,-125.57,-300.0:26:99:531:5 0/0:0.0,-189.81,-300.0:22:99:751:15 0/0:0.0,-148.03,-300.0:23:99:596:8 0/0:0.0,-130.05,-300.0:23:99:497:8 0/0:0.0,-167.64,-300.0:19:99:639:4 0/0:0.0,-300.0,-300.0:25:99:1773:23 0/0:0.0,-121.15,-300.0:21:99:464:4 0/0:0.0,-241.45,-300.0:25:99:1042:14 0/0:0.0,-174.2,-300.0:25:99:633:10 0/0:0.0,-225.42,-300.0:25:99:869:14 0/0:0.0,-114.2,-300.0:22:99:408:3 0/0:0.0,-150.87,-300.0:20:99:589:13 0/0:0.0,-157.15,-300.0:26:99:617:13 0/0:0.0,-190.18,-300.0:23:99:742:13 0/0:0.0,-40.7,-300.0:14:99:139:6 0/0:0.0,-45.07,-300.0:20:99:163:4 0/0:0.0,-42.5,-300.0:17:99:151:2 0/0:0.0,-62.08,-300.0:15:99:220:0 0/0:0.0,-42.58,-300.0:15:99:164:4 0/0:0.0,-46.6,-300.0:17:99:168:3 0/0:0.0,-33.33,-300.0:16:99:125:0 0/0:0.0,-43.88,-300.0:20:99:144:3 0/0:0.0,-48.61,-300.0:15:99:165:4 0/0:0.0,-38.22,-300.0:18:99:193:8 0/0:0.0,-51.39,-300.0:19:99:209:6 0/0:0.0,-58.69,-300.0:19:99:200:2 0/0:0.0,-42.42,-300.0:18:99:152:3 0/0:0.0,-45.7,-300.0:20:99:154:3 0/0:0.0,-41.8,-300.0:16:99:150:8 0/0:0.0,-44.53,-300.0:19:99:151:5 0/0:0.0,-40.38,-300.0:19:99:162:2 0/0:0.0,-157.92,-300.0:23:99:599:5 0/0:0.0,-116.87,-300.0:27:99:420:7 0/0:0.0,-160.24,-300.0:27:99:627:9 0/0:0.0,-251.46,-300.0:24:99:944:14 chrXII 112175 . TG T 762 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=2;HapScore=1;MGOF=29;MMLQ=12;MQ=59.94;NF=164;NR=168;PP=762;QD=2.42469879518;SC=TATAACAAAGTGAAAAAAAAA;SbPval=0.17;Source=Platypus;TC=19832;TCF=10535;TCR=9297;TR=332;WE=112201;WS=112124 GT:GL:GOF:GQ:NR:NV 1/0:-33.37,0.0,-300.0:29:99:321:5 0/0:0.0,-55.33,-300.0:2:99:191:8 0/0:0.0,-39.68,-300.0:1:99:128:10 0/0:0.0,-22.93,-284.98:2:99:71:3 1/0:-47.98,0.0,-300.0:25:99:292:5 0/0:0.0,-29.04,-300.0:1:99:92:5 0/0:0.0,-36.69,-300.0:2:99:133:5 0/0:0.0,-29.61,-300.0:2:99:102:1 0/0:0.0,-51.72,-300.0:17:99:200:6 0/0:0.0,-134.31,-300.0:23:99:531:5 0/0:0.0,-203.68,-300.0:23:99:766:13 0/0:0.0,-120.82,-300.0:23:99:445:5 0/0:0.0,-120.19,-300.0:21:99:454:4 0/0:0.0,-132.82,-300.0:26:99:514:6 0/0:0.0,-125.57,-300.0:26:99:528:5 0/0:0.0,-189.81,-300.0:22:99:753:15 0/0:0.0,-148.03,-300.0:23:99:597:8 0/0:0.0,-130.05,-300.0:23:99:496:8 0/0:0.0,-167.64,-300.0:19:99:639:5 0/0:0.0,-300.0,-300.0:25:99:1772:24 0/0:0.0,-121.15,-300.0:21:99:469:4 0/0:0.0,-241.45,-300.0:25:99:1050:15 0/0:0.0,-174.2,-300.0:25:99:639:10 0/0:0.0,-225.42,-300.0:25:99:872:15 0/0:0.0,-114.2,-300.0:22:99:417:3 0/0:0.0,-150.87,-300.0:20:99:588:13 0/0:0.0,-157.15,-300.0:26:99:621:13 0/0:0.0,-190.18,-300.0:23:99:743:13 0/0:0.0,-40.7,-300.0:14:99:138:6 0/0:0.0,-45.07,-300.0:20:99:163:4 0/0:0.0,-42.5,-300.0:17:99:153:2 0/0:0.0,-62.08,-300.0:15:99:220:0 0/0:0.0,-42.58,-300.0:15:99:163:4 0/0:0.0,-46.6,-300.0:17:99:168:3 0/0:0.0,-33.33,-300.0:16:99:125:0 0/0:0.0,-43.88,-300.0:20:99:145:3 0/0:0.0,-48.61,-300.0:15:99:165:4 0/0:0.0,-38.22,-300.0:18:99:191:8 0/0:0.0,-51.39,-300.0:19:99:211:6 0/0:0.0,-58.69,-300.0:19:99:203:2 0/0:0.0,-42.42,-300.0:18:99:150:3 0/0:0.0,-45.7,-300.0:20:99:153:3 0/0:0.0,-41.8,-300.0:16:99:150:8 0/0:0.0,-44.53,-300.0:19:99:150:5 0/0:0.0,-40.38,-300.0:19:99:163:2 0/0:0.0,-157.92,-300.0:23:99:600:6 0/0:0.0,-116.87,-300.0:27:99:422:7 0/0:0.0,-160.24,-300.0:27:99:630:10 0/0:0.0,-251.46,-300.0:24:99:945:14 chrXII 112176 . G GAA 803 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=14;HapScore=1;MGOF=29;MMLQ=12;MQ=59.93;NF=155;NR=166;PP=803;QD=2.51401869159;SC=ATAACAAAGTGAAAAAAAAAA;SbPval=0.41;Source=Platypus;TC=21662;TCF=11310;TCR=10352;TR=321;WE=112201;WS=112124 GT:GL:GOF:GQ:NR:NV 1/0:-33.37,0.0,-300.0:29:99:343:4 0/0:0.0,-55.33,-238.49:2:99:197:7 0/0:0.0,-39.68,-188.79:2:99:133:9 0/0:0.0,-22.93,-128.96:2:99:77:3 1/0:-47.98,0.0,-300.0:25:99:317:4 0/0:0.0,-29.04,-145.04:1:99:92:3 0/0:0.0,-36.69,-190.65:2:99:128:4 0/0:0.0,-29.61,-165.9:2:99:100:1 0/0:0.0,-51.72,-285.39:18:99:212:6 0/0:0.0,-134.31,-300.0:24:99:571:5 0/0:0.0,-203.68,-300.0:23:99:816:13 0/0:0.0,-120.82,-300.0:23:99:503:5 0/0:0.0,-120.19,-300.0:22:99:508:4 0/0:0.0,-132.82,-300.0:26:99:571:6 0/0:0.0,-125.57,-300.0:26:99:581:5 0/0:0.0,-189.81,-300.0:23:99:806:15 0/0:0.0,-148.03,-300.0:23:99:652:8 0/0:0.0,-130.05,-300.0:23:99:537:8 0/0:0.0,-167.64,-300.0:19:99:719:6 0/0:0.0,-300.0,-300.0:25:99:1932:23 0/0:0.0,-121.15,-300.0:21:99:523:4 0/0:0.0,-241.45,-300.0:25:99:1141:14 0/0:0.0,-174.2,-300.0:25:99:713:9 0/0:0.0,-225.42,-300.0:25:99:953:14 0/0:0.0,-114.2,-300.0:22:99:452:3 0/0:0.0,-150.87,-300.0:21:99:669:12 0/0:0.0,-157.15,-300.0:26:99:684:13 0/0:0.0,-190.18,-300.0:24:99:825:12 0/0:0.0,-40.7,-222.8:14:99:140:6 0/0:0.0,-45.07,-249.75:20:99:170:4 0/0:0.0,-42.5,-237.03:17:99:158:2 0/0:0.0,-62.08,-300.0:15:99:234:0 0/0:0.0,-42.58,-237.45:15:99:179:4 0/0:0.0,-46.6,-260.81:17:99:184:3 0/0:0.0,-33.33,-200.48:16:99:139:0 0/0:0.0,-43.88,-232.06:20:99:161:3 0/0:0.0,-48.61,-269.39:15:99:186:4 0/0:0.0,-38.22,-271.83:18:99:204:8 0/0:0.0,-51.39,-291.15:19:99:226:6 0/0:0.0,-58.69,-300.0:19:99:225:2 0/0:0.0,-42.42,-240.27:18:99:170:3 0/0:0.0,-45.7,-250.68:21:99:165:3 0/0:0.0,-41.8,-216.79:16:99:168:8 0/0:0.0,-44.53,-237.98:19:99:164:5 0/0:0.0,-40.38,-259.5:19:99:175:2 0/0:0.0,-157.92,-300.0:23:99:654:6 0/0:0.0,-116.87,-300.0:27:99:453:7 0/0:0.0,-160.24,-300.0:27:99:699:10 0/0:0.0,-251.46,-300.0:24:99:1053:15 chrXII 116027 . GATTAA GTCGCCGTATCATTAA,G 85 badReads;QD;alleleBias BRF=0.03;FR=0.0103,0.0304;HP=1;HapScore=1;MGOF=29;MMLQ=14;MQ=59.95;NF=66,67;NR=18,18;PP=34,85;QD=0.761904761905;SC=TCTCTCGGTGGATTAATTATT;SbPval=0.2;Source=Platypus;TC=21596;TCF=9122;TCR=12474;TR=84,85;WE=116058;WS=116017 GT:GL:GOF:GQ:NR:NV 0/0:-1,-1,-1:12:99:418,439:0,0 0/0:-1,-1,-1:0:99:216,229:0,0 0/0:-1,-1,-1:0:99:145,154:0,0 0/0:-1,-1,-1:2:99:90,94:0,0 0/0:-1,-1,-1:13:99:381,408:1,1 0/0:-1,-1,-1:2:99:87,93:0,0 0/0:-1,-1,-1:0:99:143,149:0,0 0/0:-1,-1,-1:0:99:111,114:0,0 0/0:-1,-1,-1:10:61:147,146:2,2 0/0:-1,-1,-1:23:99:584,591:2,2 0/0:-1,-1,-1:22:99:708,736:1,1 0/0:-1,-1,-1:23:99:514,533:0,0 0/0:-1,-1,-1:24:99:554,566:1,1 0/0:-1,-1,-1:26:99:629,655:3,3 0/0:-1,-1,-1:23:99:646,662:1,1 0/0:-1,-1,-1:22:99:738,772:0,0 0/0:-1,-1,-1:22:99:642,677:3,3 0/0:-1,-1,-1:23:99:561,584:1,1 0/0:-1,-1,-1:20:99:798,832:2,2 0/0:-1,-1,-1:23:99:2081,2154:6,6 0/0:-1,-1,-1:22:99:604,626:1,1 0/0:-1,-1,-1:24:99:1182,1226:5,5 0/0:-1,-1,-1:25:99:714,732:0,0 0/0:-1,-1,-1:23:99:969,1008:3,3 0/0:-1,-1,-1:23:99:536,552:0,0 0/0:-1,-1,-1:20:99:646,666:3,3 0/0:-1,-1,-1:20:99:695,723:1,1 0/0:-1,-1,-1:21:99:903,928:1,1 0/0:-1,-1,-1:9:99:122,121:1,1 0/0:-1,-1,-1:14:99:151,150:1,1 0/0:-1,-1,-1:10:99:145,143:2,2 0/1:-1,-1,-1:14:69:174,174:5,5 0/2:-1,-1,-1:10:18:160,152:4,4 0/0:-1,-1,-1:15:99:150,142:2,2 0/2:-1,-1,-1:12:87:121,119:3,3 0/0:-1,-1,-1:12:99:155,159:2,2 0/0:-1,-1,-1:8:99:165,159:1,1 0/0:-1,-1,-1:14:43:211,207:5,5 0/0:-1,-1,-1:9:99:203,199:2,2 0/0:-1,-1,-1:13:99:185,187:2,2 0/0:-1,-1,-1:12:49:147,146:3,4 0/2:-1,-1,-1:22:23:138,136:6,6 0/0:-1,-1,-1:9:99:119,118:3,3 0/0:-1,-1,-1:11:99:182,178:2,2 0/0:-1,-1,-1:11:99:162,163:1,1 0/0:-1,-1,-1:23:99:734,754:2,2 0/0:-1,-1,-1:29:99:406,424:0,0 0/0:-1,-1,-1:26:99:536,566:0,0 0/0:-1,-1,-1:26:99:788,817:0,0 chrXII 116033 . T TCGCCG 85 badReads;QD;alleleBias;strandBias BRF=0.03;FR=0.0304;HP=2;HapScore=1;MGOF=29;MMLQ=14;MQ=59.96;NF=66;NR=17;PP=85;QD=1.38554216867;SC=GGTGGATTAATTATTTTGTTT;SbPval=0.0;Source=Platypus;TC=21658;TCF=9141;TCR=12517;TR=83;WE=116058;WS=116017 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-132.84,-300.0:12:99:431:0 0/0:0.0,-70.31,-300.0:0:99:214:0 0/0:0.0,-48.03,-300.0:0:99:147:0 0/0:0.0,-29.07,-300.0:2:99:83:0 0/0:0.0,-121.1,-300.0:13:99:397:0 0/0:0.0,-28.17,-300.0:2:99:86:0 0/0:0.0,-46.53,-300.0:0:99:139:0 0/0:0.0,-36.6,-300.0:0:99:110:0 0/0:0.0,-6.08,-300.0:10:61:140:2 0/0:0.0,-164.3,-300.0:23:99:585:2 0/0:0.0,-210.72,-300.0:22:99:712:1 0/0:0.0,-158.38,-300.0:23:99:517:0 0/0:0.0,-156.93,-300.0:24:99:553:1 0/0:0.0,-158.36,-300.0:26:99:648:2 0/0:0.0,-181.99,-300.0:23:99:653:1 0/0:0.0,-205.79,-300.0:22:99:747:0 0/0:0.0,-180.45,-300.0:22:99:664:3 0/0:0.0,-169.64,-300.0:23:99:575:1 0/0:0.0,-233.73,-300.0:20:99:821:2 0/0:0.0,-300.0,-300.0:23:99:2097:6 0/0:0.0,-167.83,-300.0:22:99:612:1 0/0:0.0,-300.0,-300.0:24:99:1207:5 0/0:0.0,-219.06,-300.0:25:99:717:0 0/0:0.0,-260.86,-300.0:23:99:979:3 0/0:0.0,-154.65,-300.0:23:99:538:0 0/0:0.0,-167.92,-300.0:20:99:645:3 0/0:0.0,-187.12,-300.0:20:99:704:1 0/0:0.0,-266.08,-300.0:21:99:910:1 0/0:0.0,-22.12,-300.0:9:99:114:1 0/0:0.0,-24.39,-300.0:14:99:146:1 0/0:0.0,-21.26,-300.0:10:99:138:2 0/0:0.0,-6.87,-300.0:14:69:165:5 0/1:-1.78,0.0,-300.0:10:18:143:4 0/0:0.0,-17.37,-300.0:15:99:130:2 0/1:-8.72,0.0,-300.0:12:87:110:3 0/0:0.0,-23.63,-300.0:12:99:150:2 0/0:0.0,-19.33,-300.0:8:99:154:1 0/0:0.0,-4.31,-300.0:14:43:201:5 0/0:0.0,-11.04,-300.0:9:99:194:2 0/0:0.0,-12.01,-300.0:13:99:176:2 0/0:0.0,-4.92,-300.0:12:49:133:4 0/1:-2.27,0.0,-300.0:22:23:129:6 0/0:0.0,-12.74,-300.0:9:99:113:3 0/0:0.0,-24.51,-300.0:11:99:172:2 0/0:0.0,-40.8,-300.0:11:99:156:1 0/0:0.0,-194.05,-300.0:23:99:728:2 0/0:0.0,-115.35,-300.0:29:99:416:0 0/0:0.0,-155.99,-300.0:26:99:562:0 0/0:0.0,-239.55,-300.0:26:99:797:0 chrXII 116035 . ATTTTGTTTGT A 182 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=6;HapScore=1;MGOF=29;MMLQ=14;MQ=59.95;NF=62;NR=18;PP=182;QD=2.65;SC=TGGATTAATTATTTTGTTTGT;SbPval=1.0;Source=Platypus;TC=23401;TCF=9952;TCR=13449;TR=80;WE=116058;WS=116017 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-142.27,-300.0:12:99:458:0 0/0:0.0,-79.64,-300.0:0:99:247:0 0/0:0.0,-52.84,-300.0:0:99:164:0 0/0:0.0,-31.77,-300.0:2:99:94:0 0/0:0.0,-138.94,-300.0:13:99:434:0 0/0:0.0,-31.77,-300.0:2:99:104:0 0/0:0.0,-51.64,-300.0:0:99:156:0 0/0:0.0,-41.4,-300.0:0:99:126:0 0/0:0.0,-25.78,-300.0:10:99:167:2 0/0:0.0,-178.01,-300.0:23:99:612:1 0/0:0.0,-243.52,-300.0:22:99:761:1 0/0:0.0,-163.35,-300.0:23:99:561:0 0/0:0.0,-176.46,-300.0:24:99:591:1 0/0:0.0,-191.9,-300.0:26:99:700:2 0/0:0.0,-200.15,-300.0:23:99:685:1 0/0:0.0,-238.29,-300.0:22:99:782:0 0/0:0.0,-209.24,-300.0:22:99:703:3 0/0:0.0,-192.88,-300.0:23:99:618:1 0/0:0.0,-270.46,-300.0:20:99:881:2 0/0:0.0,-300.0,-300.0:23:99:2254:6 0/0:0.0,-200.87,-300.0:22:99:660:1 0/0:0.0,-300.0,-300.0:24:99:1279:4 0/0:0.0,-244.68,-300.0:25:99:775:0 0/0:0.0,-300.0,-300.0:23:99:1057:2 0/0:0.0,-170.03,-300.0:23:99:560:0 0/0:0.0,-197.13,-300.0:20:99:676:4 0/0:0.0,-224.84,-300.0:20:99:747:2 0/0:0.0,-300.0,-300.0:21:99:970:2 0/0:0.0,-35.79,-300.0:9:99:134:1 0/0:0.0,-37.66,-300.0:14:99:168:1 0/0:0.0,-29.58,-300.0:10:99:156:2 0/1:-6.87,0.0,-300.0:14:69:185:4 0/0:0.0,-17.75,-300.0:10:99:161:4 0/0:0.0,-26.78,-300.0:15:99:156:2 0/0:0.0,-8.75,-300.0:12:87:127:3 0/0:0.0,-23.63,-300.0:12:99:181:2 0/0:0.0,-38.58,-300.0:8:99:182:1 0/0:0.0,-4.31,-300.0:14:43:226:5 0/0:0.0,-33.49,-300.0:9:99:219:2 0/0:0.0,-23.08,-300.0:13:99:206:2 0/0:0.0,-19.84,-300.0:12:99:149:4 0/1:-15.22,0.0,-300.0:22:99:154:6 0/0:0.0,-31.18,-300.0:9:99:133:2 0/0:0.0,-42.39,-300.0:11:99:196:2 0/0:0.0,-53.06,-300.0:11:99:172:0 0/0:0.0,-228.32,-300.0:23:99:772:2 0/0:0.0,-126.77,-300.0:29:99:442:0 0/0:0.0,-187.47,-300.0:26:99:596:0 0/0:0.0,-272.8,-300.0:26:99:864:0 chrXII 121861 . G GAAAAAAA 7 Q20;badReads;QD;alleleBias BRF=0.07;FR=0.0102;HP=4;HapScore=1;MGOF=35;MMLQ=12;MQ=59.97;NF=28;NR=27;PP=7;QD=0.909090909091;SC=AGAGCGCAAAGATTTTTGCAG;SbPval=1.0;Source=Platypus;TC=19015;TCF=8644;TCR=10371;TR=55;WE=121879;WS=121847 GT:GL:GOF:GQ:NR:NV 1/0:-5.32,0.0,-300.0:33:53:289:7 0/0:0.0,-63.7,-300.0:0:99:194:1 0/0:0.0,-48.95,-300.0:0:99:147:0 0/0:0.0,-23.96,-300.0:0:99:73:0 0/0:0.0,-82.57,-300.0:24:99:276:1 0/0:0.0,-32.39,-300.0:0:99:95:0 0/0:0.0,-43.53,-300.0:1:99:129:0 0/0:0.0,-36.61,-300.0:0:99:107:0 0/0:0.0,-32.12,-300.0:14:99:121:0 0/0:0.0,-156.88,-300.0:17:99:491:1 0/0:0.0,-199.07,-300.0:20:99:594:0 0/0:0.0,-143.81,-300.0:18:99:458:2 0/0:0.0,-157.83,-300.0:17:99:495:2 0/0:0.0,-184.62,-300.0:19:99:571:3 0/0:0.0,-178.04,-300.0:16:99:542:2 0/0:0.0,-229.74,-300.0:17:99:703:2 0/0:0.0,-189.09,-300.0:16:99:611:1 0/0:0.0,-146.71,-300.0:15:99:458:1 0/0:0.0,-211.7,-300.0:19:99:645:1 0/0:0.0,-300.0,-300.0:17:99:1820:2 0/0:0.0,-149.97,-300.0:17:99:470:0 0/0:0.0,-300.0,-300.0:22:99:1049:2 0/0:0.0,-183.13,-300.0:19:99:543:1 0/0:0.0,-297.17,-300.0:17:99:898:2 0/0:0.0,-145.21,-300.0:18:99:446:2 0/0:0.0,-217.2,-300.0:18:99:663:1 0/0:0.0,-208.69,-300.0:19:99:644:3 0/0:0.0,-249.25,-300.0:17:99:767:1 0/0:0.0,-27.28,-300.0:12:99:88:1 0/0:0.0,-48.65,-300.0:14:99:141:1 0/0:0.0,-44.13,-300.0:15:99:132:0 0/0:0.0,-59.09,-300.0:14:99:183:1 0/0:0.0,-53.5,-300.0:16:99:153:0 0/0:0.0,-54.97,-300.0:17:99:159:0 0/0:0.0,-35.1,-300.0:22:99:100:0 0/0:0.0,-42.93,-300.0:15:99:125:0 0/0:0.0,-48.04,-300.0:15:99:143:0 0/0:0.0,-45.34,-300.0:11:99:131:0 0/0:0.0,-59.19,-300.0:17:99:181:0 0/0:0.0,-47.14,-300.0:11:99:145:0 0/0:0.0,-41.42,-300.0:16:99:127:0 0/0:0.0,-45.04,-300.0:15:99:145:0 0/0:0.0,-32.41,-300.0:10:99:109:1 0/0:0.0,-40.82,-300.0:12:99:121:1 0/0:0.0,-53.16,-300.0:16:99:155:1 0/0:0.0,-209.83,-300.0:19:99:666:4 0/0:0.0,-119.59,-300.0:22:99:373:1 0/0:0.0,-189.17,-300.0:35:99:542:2 0/0:0.0,-264.86,-300.0:25:99:797:4 chrXII 121862 . ATTTTTGC A 18 Q20;badReads;QD;alleleBias BRF=0.07;FR=0.0102;HP=5;HapScore=1;MGOF=35;MMLQ=12;MQ=59.97;NF=29;NR=29;PP=18;QD=0.844827586207;SC=GAGCGCAAAGATTTTTGCAGA;SbPval=1.0;Source=Platypus;TC=19564;TCF=8621;TCR=10943;TR=58;WE=121879;WS=121847 GT:GL:GOF:GQ:NR:NV 1/0:-5.32,0.0,-300.0:33:53:301:8 0/0:0.0,-63.7,-300.0:0:99:202:1 0/0:0.0,-48.95,-300.0:0:99:154:0 0/0:0.0,-23.96,-300.0:0:99:71:0 0/0:0.0,-82.57,-300.0:24:99:278:0 0/0:0.0,-32.39,-300.0:0:99:100:0 0/0:0.0,-43.53,-300.0:1:99:139:0 0/0:0.0,-36.61,-300.0:0:99:112:0 0/0:0.0,-32.12,-300.0:14:99:130:0 0/0:0.0,-156.88,-300.0:17:99:501:1 0/0:0.0,-199.07,-300.0:20:99:615:0 0/0:0.0,-143.81,-300.0:18:99:467:2 0/0:0.0,-157.83,-300.0:17:99:500:2 0/0:0.0,-184.62,-300.0:19:99:585:3 0/0:0.0,-178.04,-300.0:16:99:559:2 0/0:0.0,-229.74,-300.0:17:99:720:2 0/0:0.0,-189.09,-300.0:16:99:628:1 0/0:0.0,-146.71,-300.0:15:99:461:1 0/0:0.0,-211.7,-300.0:19:99:651:1 0/0:0.0,-300.0,-300.0:17:99:1873:4 0/0:0.0,-149.97,-300.0:17:99:482:0 0/0:0.0,-300.0,-300.0:22:99:1089:2 0/0:0.0,-183.13,-300.0:19:99:566:2 0/0:0.0,-297.17,-300.0:17:99:930:2 0/0:0.0,-145.21,-300.0:18:99:460:2 0/0:0.0,-217.2,-300.0:18:99:680:1 0/0:0.0,-208.69,-300.0:19:99:663:3 0/0:0.0,-249.25,-300.0:17:99:782:1 0/0:0.0,-27.28,-300.0:12:99:90:1 0/0:0.0,-48.65,-300.0:14:99:144:1 0/0:0.0,-44.13,-300.0:15:99:133:0 0/0:0.0,-59.09,-300.0:14:99:184:1 0/0:0.0,-53.5,-300.0:16:99:160:0 0/0:0.0,-54.97,-300.0:17:99:163:0 0/0:0.0,-35.1,-300.0:22:99:102:0 0/0:0.0,-42.93,-300.0:15:99:133:0 0/0:0.0,-48.04,-300.0:15:99:148:0 0/0:0.0,-45.34,-300.0:11:99:146:0 0/0:0.0,-59.19,-300.0:17:99:187:0 0/0:0.0,-47.14,-300.0:11:99:152:0 0/0:0.0,-41.42,-300.0:16:99:130:0 0/0:0.0,-45.04,-300.0:15:99:146:1 0/0:0.0,-32.41,-300.0:10:99:111:1 0/0:0.0,-40.82,-300.0:12:99:122:1 0/0:0.0,-53.16,-300.0:16:99:160:1 0/0:0.0,-209.83,-300.0:19:99:669:3 0/0:0.0,-119.59,-300.0:22:99:388:1 0/0:0.0,-189.17,-300.0:35:99:562:2 0/0:0.0,-264.86,-300.0:25:99:835:4 chrXII 122008 . G GA 3000 badReads;alleleBias BRF=0.38;FR=0.4369;HP=20;HapScore=1;MGOF=56;MMLQ=12;MQ=43.77;NF=262;NR=69;PP=3000;QD=20;SC=ACAAATGGAGGAAAAAAAAAA;SbPval=0.98;Source=Platypus;TC=18444;TCF=12318;TCR=6126;TR=331;WE=122056;WS=121988 GT:GL:GOF:GQ:NR:NV 1/0:-76.77,0.0,-3.73:39:37:255:5 ./.:-0.13,0.0,-1.91:1:4:178:2 0/0:0.0,-1.87,-5.98:1:19:125:1 0/0:0.0,-0.98,-3.78:0:10:47:0 1/0:-19.21,0.0,-7.95:27:80:255:3 ./.:0.0,-0.09,-1.98:0:3:81:2 0/0:0.0,-1.98,-5.88:1:20:125:0 0/0:0.0,-1.08,-4.28:2:11:83:3 1/0:-6.0,0.0,-0.18:21:4:96:1 1/0:-37.77,0.0,-48.62:24:99:502:6 1/0:-81.4,0.0,-60.91:32:99:703:8 1/0:-45.79,0.0,-37.82:26:99:493:14 1/0:-75.44,0.0,-46.23:25:99:544:14 1/0:-5.46,0.0,-51.97:24:55:578:10 1/0:-70.87,0.0,-56.15:29:99:602:15 1/0:-62.05,0.0,-60.56:24:99:690:16 1/0:-22.19,0.0,-58.98:25:99:631:16 1/0:-41.97,0.0,-34.97:25:99:449:11 1/0:-74.28,0.0,-51.22:26:99:633:14 1/0:-194.14,0.0,-163.12:27:99:1941:33 1/0:-67.25,0.0,-43.68:26:99:509:11 1/0:-137.85,0.0,-76.27:28:99:1054:20 1/0:-85.72,0.0,-55.73:31:99:652:10 1/0:-100.62,0.0,-73.06:28:99:929:15 1/0:-10.35,0.0,-45.43:29:99:478:7 1/0:-74.35,0.0,-59.31:22:99:583:3 1/0:-39.75,0.0,-48.35:25:99:586:10 1/0:-72.11,0.0,-74.71:25:99:772:18 ./.:0.0,-0.01,-0.98:30:3:44:0 1/0:-3.98,0.0,-0.56:31:7:52:0 1/0:-3.5,0.0,-2.08:15:21:86:0 1/0:-0.77,0.0,-1.56:30:8:106:0 1/0:-0.6,0.0,-0.79:16:5:100:0 1/0:-0.72,0.0,-1.5:19:7:83:2 0/0:0.0,-0.68,-2.38:12:8:70:0 1/0:-1.67,0.0,-5.65:42:17:87:1 1/0:-3.05,0.0,-1.04:30:11:78:0 1/0:-3.02,0.0,-0.41:31:5:96:1 1/0:-2.17,0.0,-0.45:28:6:117:1 1/0:-1.78,0.0,-1.26:18:12:110:0 1/0:-1.79,0.0,-1.27:33:12:86:0 1/0:-1.55,0.0,-1.13:23:10:74:0 1/0:-1.02,0.0,-3.8:33:11:67:1 0/0:0.0,-0.42,-1.98:14:5:58:0 ./.:-0.12,0.0,-1.61:27:4:61:1 1/0:-81.52,0.0,-52.96:24:99:612:14 1/0:-72.19,0.0,-31.06:42:99:424:14 1/0:-114.54,0.0,-15.99:56:99:576:13 1/0:-130.69,0.0,-51.11:36:99:883:15 chrXII 122038 . AT A 3000 badReads;alleleBias BRF=0.38;FR=0.2449;HP=20;HapScore=1;MGOF=56;MMLQ=12;MQ=44.47;NF=250;NR=74;PP=3000;QD=20;SC=AAAAAAAAAAATAGTAAAAAG;SbPval=1.0;Source=Platypus;TC=17477;TCF=8897;TCR=8580;TR=324;WE=122056;WS=121988 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-40.91,-299.28:39:99:240:3 0/0:0.0,-25.09,-300.0:1:99:106:3 0/0:0.0,-22.62,-275.53:1:99:86:1 0/0:0.0,-7.57,-105.57:0:76:34:1 1/0:-19.21,0.0,-300.0:27:99:257:2 0/0:0.0,-18.0,-218.28:0:99:63:2 0/0:0.0,-18.36,-226.83:1:99:74:0 0/0:0.0,-13.33,-189.16:2:99:68:4 0/0:0.0,-12.85,-192.94:21:99:54:1 1/0:-37.77,0.0,-300.0:24:99:469:7 1/0:-65.37,0.0,-300.0:32:99:674:7 1/0:-45.79,0.0,-300.0:26:99:452:12 1/0:-64.83,0.0,-300.0:25:99:551:14 1/0:-5.46,0.0,-300.0:24:55:580:10 1/0:-57.49,0.0,-300.0:29:99:596:15 1/0:-62.05,0.0,-300.0:24:99:691:16 1/0:-22.19,0.0,-300.0:25:99:620:16 1/0:-41.97,0.0,-300.0:25:99:475:10 1/0:-64.77,0.0,-300.0:26:99:623:10 1/0:-154.51,0.0,-300.0:27:99:1892:32 1/0:-57.99,0.0,-300.0:26:99:509:12 1/0:-97.75,0.0,-300.0:28:99:1099:18 1/0:-61.74,0.0,-300.0:31:99:624:9 1/0:-80.0,0.0,-300.0:28:99:904:16 1/0:-10.35,0.0,-300.0:29:99:487:7 1/0:-65.35,0.0,-300.0:22:99:578:2 1/0:-39.75,0.0,-300.0:25:99:573:10 1/0:-72.11,0.0,-300.0:25:99:783:21 0/0:0.0,-6.35,-91.44:30:64:29:0 0/0:0.0,-10.35,-138.3:31:99:36:0 0/0:0.0,-13.22,-160.43:15:99:50:0 0/0:0.0,-5.42,-168.68:30:54:59:0 0/0:0.0,-4.21,-153.88:16:42:55:0 0/0:0.0,-10.86,-148.83:19:99:49:2 0/0:0.0,-9.93,-141.81:12:99:50:0 0/0:0.0,-11.85,-134.0:42:99:38:0 0/0:0.0,-11.61,-156.52:30:99:52:0 0/0:0.0,-15.5,-168.19:31:99:53:1 0/0:0.0,-9.58,-165.33:28:96:60:1 0/0:0.0,-13.24,-205.23:18:99:66:0 0/0:0.0,-7.08,-129.64:33:71:51:0 0/0:0.0,-2.49,-124.71:23:25:44:0 0/0:0.0,-14.32,-150.78:33:99:40:1 0/0:0.0,-5.53,-126.77:14:55:45:0 0/0:0.0,-11.45,-149.5:27:99:48:2 1/0:-68.07,0.0,-300.0:24:99:667:16 1/0:-53.92,0.0,-300.0:42:99:424:13 1/0:-41.76,0.0,-300.0:56:99:564:13 1/0:-75.02,0.0,-300.0:36:99:835:14 chrXII 122039 . T A 370 badReads;QD;alleleBias BRF=0.38;FR=0.0102;HP=21;HapScore=1;MGOF=56;MMLQ=12;MQ=48.45;NF=3424;NR=24;PP=370;QD=0.117393043082;SC=AAAAAAAAAATAGTAAAAAGT;SbPval=1.0;Source=Platypus;TC=17568;TCF=8989;TCR=8579;TR=3448;WE=122056;WS=121988 GT:GL:GOF:GQ:NR:NV 1/0:-40.91,0.0,-300.0:39:99:238:25 0/0:0.0,-26.73,-300.0:1:99:114:9 0/0:0.0,-26.02,-300.0:1:99:91:4 0/0:0.0,-9.82,-138.03:0:98:41:6 0/0:0.0,-36.95,-300.0:27:99:257:54 0/0:0.0,-19.81,-255.09:0:99:67:6 0/0:0.0,-19.34,-269.58:1:99:79:3 0/0:0.0,-13.33,-222.65:2:99:71:8 0/0:0.0,-15.16,-215.91:21:99:55:3 0/0:0.0,-49.62,-300.0:24:99:476:94 0/0:0.0,-65.37,-300.0:32:99:685:154 0/0:0.0,-52.92,-300.0:26:99:456:99 0/0:0.0,-64.83,-300.0:25:99:555:118 0/0:0.0,-55.5,-300.0:24:99:578:99 0/0:0.0,-57.49,-300.0:29:99:599:123 0/0:0.0,-66.66,-300.0:24:99:692:130 0/0:0.0,-59.64,-300.0:25:99:620:112 0/0:0.0,-56.28,-300.0:25:99:480:98 0/0:0.0,-64.77,-300.0:26:99:632:136 0/0:0.0,-154.51,-300.0:27:99:1903:386 0/0:0.0,-57.99,-300.0:26:99:507:116 0/0:0.0,-97.75,-300.0:28:99:1101:241 0/0:0.0,-61.74,-300.0:31:99:628:140 0/0:0.0,-80.0,-300.0:28:99:908:193 0/0:0.0,-50.34,-300.0:29:99:485:82 0/0:0.0,-65.35,-300.0:22:99:590:144 0/0:0.0,-58.77,-300.0:25:99:576:122 0/0:0.0,-75.28,-300.0:25:99:786:160 0/0:0.0,-10.8,-122.3:30:99:29:1 0/0:0.0,-3.31,-154.91:31:33:36:1 0/0:0.0,-15.85,-191.53:15:99:47:1 0/0:0.0,-4.89,-204.49:30:49:53:1 0/0:0.0,-6.84,-186.64:16:68:53:5 0/0:0.0,-14.67,-180.72:19:99:46:1 0/0:0.0,-15.39,-177.9:12:99:46:2 0/0:0.0,-14.04,-164.4:42:99:36:2 0/0:0.0,-11.09,-187.69:30:99:50:3 0/0:0.0,-16.79,-202.67:31:99:48:1 0/0:0.0,-8.99,-193.76:28:90:53:3 0/0:0.0,-15.32,-243.73:18:99:62:3 0/0:0.0,-10.55,-156.08:33:99:50:5 0/0:0.0,-9.49,-160.58:23:95:43:6 0/0:0.0,-16.45,-183.08:33:99:40:1 0/0:0.0,-5.86,-153.44:14:59:41:2 0/0:0.0,-10.24,-180.18:27:99:46:1 0/0:0.0,-68.07,-300.0:24:99:663:133 0/0:0.0,-53.92,-300.0:42:99:426:99 0/0:0.0,-41.76,-300.0:56:99:578:123 0/0:0.0,-75.02,-300.0:36:99:852:189 chrXII 122040 . AGT A 444 badReads;QD;alleleBias BRF=0.38;FR=0.0102;HP=1;HapScore=1;MGOF=56;MMLQ=12;MQ=49.2;NF=237;NR=72;PP=444;QD=1.57605177994;SC=AAAAAAAAATAGTAAAAAGTG;SbPval=1.0;Source=Platypus;TC=17904;TCF=9213;TCR=8691;TR=309;WE=122056;WS=121988 GT:GL:GOF:GQ:NR:NV 1/0:-49.18,0.0,-300.0:39:99:239:3 0/0:0.0,-26.73,-300.0:1:99:119:3 0/0:0.0,-26.02,-300.0:1:99:90:1 0/0:0.0,-9.82,-164.63:0:98:37:1 0/0:0.0,-38.13,-300.0:27:99:259:2 0/0:0.0,-19.81,-295.04:0:99:64:2 0/0:0.0,-19.34,-300.0:1:99:82:0 0/0:0.0,-13.33,-273.12:2:99:72:4 0/0:0.0,-15.16,-260.7:21:99:58:1 0/0:0.0,-62.52,-300.0:24:99:471:7 0/0:0.0,-91.82,-300.0:32:99:688:4 0/0:0.0,-82.33,-300.0:26:99:460:12 0/0:0.0,-115.37,-300.0:25:99:566:14 0/0:0.0,-102.35,-300.0:24:99:582:10 0/0:0.0,-100.49,-300.0:29:99:606:12 0/0:0.0,-117.99,-300.0:24:99:725:16 0/0:0.0,-102.95,-300.0:25:99:634:16 0/0:0.0,-96.74,-300.0:25:99:487:8 0/0:0.0,-113.11,-300.0:26:99:643:10 0/0:0.0,-300.0,-300.0:27:99:1939:32 0/0:0.0,-109.85,-300.0:26:99:517:12 0/0:0.0,-206.45,-300.0:28:99:1110:16 0/0:0.0,-91.74,-300.0:31:99:638:9 0/0:0.0,-200.99,-300.0:28:99:932:14 0/0:0.0,-84.81,-300.0:29:99:494:7 0/0:0.0,-121.76,-300.0:22:99:585:2 0/0:0.0,-104.18,-300.0:25:99:589:10 0/0:0.0,-156.15,-300.0:25:99:803:20 0/0:0.0,-10.8,-155.7:30:99:33:0 0/0:0.0,-3.31,-178.06:31:33:42:0 0/0:0.0,-15.85,-247.49:15:99:53:0 0/0:0.0,-4.89,-280.34:30:49:66:0 0/0:0.0,-6.84,-239.14:16:68:59:0 0/0:0.0,-14.67,-223.09:19:99:50:2 0/0:0.0,-15.39,-229.67:12:99:50:0 0/0:0.0,-14.04,-208.86:42:99:45:0 0/0:0.0,-11.09,-239.38:30:99:55:0 0/0:0.0,-16.79,-249.55:31:99:53:1 0/0:0.0,-8.99,-254.09:28:90:64:1 0/0:0.0,-15.32,-300.0:18:99:68:0 0/0:0.0,-10.55,-212.6:33:99:56:0 0/0:0.0,-9.49,-207.98:23:95:52:0 0/0:0.0,-16.45,-224.24:33:99:44:1 0/0:0.0,-5.86,-188.73:14:59:45:0 0/0:0.0,-10.24,-213.96:27:99:50:2 0/0:0.0,-131.36,-300.0:24:99:678:15 0/0:0.0,-73.75,-300.0:42:99:434:12 0/0:0.0,-93.65,-300.0:56:99:567:13 0/0:0.0,-96.46,-300.0:36:99:851:14 chrXII 150960 . G GT 83 badReads;QD;alleleBias BRF=0.03;FR=0.0102;HP=10;HapScore=1;MGOF=27;MMLQ=12;MQ=59.98;NF=72;NR=58;PP=83;QD=0.746153846154;SC=AATATATCCTGTTTTTTTTTC;SbPval=0.67;Source=Platypus;TC=24627;TCF=14044;TCR=10583;TR=130;WE=150981;WS=150948 GT:GL:GOF:GQ:NR:NV 0/1:-10.17,0.0,-300.0:23:99:489:5 0/0:0.0,-55.87,-300.0:0:99:185:0 0/0:0.0,-37.21,-271.74:0:99:118:0 0/0:0.0,-29.38,-235.42:0:99:98:0 0/0:0.0,-24.93,-300.0:17:99:439:0 0/0:0.0,-32.69,-255.5:1:99:109:1 0/0:0.0,-37.21,-275.07:1:99:133:1 0/0:0.0,-35.7,-272.14:0:99:123:0 0/0:0.0,-75.44,-300.0:3:99:251:3 0/0:0.0,-188.16,-300.0:18:99:652:4 0/0:0.0,-250.86,-300.0:19:99:867:4 0/0:0.0,-172.59,-300.0:17:99:589:4 0/0:0.0,-210.82,-300.0:16:99:721:2 0/0:0.0,-216.12,-300.0:16:99:756:3 0/0:0.0,-208.63,-300.0:18:99:720:2 0/0:0.0,-230.0,-300.0:16:99:816:6 0/0:0.0,-203.0,-300.0:16:99:684:2 0/0:0.0,-202.55,-300.0:16:99:706:4 0/0:0.0,-254.22,-300.0:16:99:861:4 0/0:0.0,-300.0,-300.0:17:99:2485:13 0/0:0.0,-184.39,-300.0:16:99:628:4 0/0:0.0,-300.0,-300.0:19:99:1397:10 0/0:0.0,-186.47,-300.0:18:99:649:5 0/0:0.0,-300.0,-300.0:16:99:1087:3 0/0:0.0,-180.7,-300.0:16:99:608:2 0/0:0.0,-199.06,-300.0:19:99:664:4 0/0:0.0,-225.69,-300.0:17:99:801:5 0/0:0.0,-288.16,-300.0:18:99:994:1 0/0:0.0,-35.93,-271.88:13:99:112:3 0/0:0.0,-65.8,-300.0:8:99:225:3 0/0:0.0,-52.86,-300.0:4:99:175:0 0/0:0.0,-70.32,-300.0:3:99:231:1 0/0:0.0,-63.32,-300.0:9:99:208:2 0/0:0.0,-59.37,-300.0:9:99:200:3 0/0:0.0,-46.76,-300.0:3:99:148:1 0/0:0.0,-60.99,-300.0:5:99:200:2 0/0:0.0,-64.99,-300.0:5:99:212:0 0/0:0.0,-71.83,-300.0:5:99:234:2 0/0:0.0,-76.53,-300.0:3:99:256:0 0/0:0.0,-91.69,-300.0:3:99:302:2 0/0:0.0,-53.46,-300.0:3:99:169:1 0/0:0.0,-54.06,-300.0:4:99:178:1 0/0:0.0,-57.08,-300.0:3:99:176:1 0/0:0.0,-48.95,-300.0:5:99:153:2 0/0:0.0,-67.93,-300.0:6:99:232:5 0/0:0.0,-220.66,-300.0:16:99:757:1 0/0:0.0,-117.46,-300.0:26:99:423:1 0/0:0.0,-158.8,-300.0:27:99:547:1 0/0:0.0,-249.61,-300.0:18:99:859:6 chrXII 150969 . TC T 83 badReads;QD;alleleBias BRF=0.03;FR=0.0102;HP=8;HapScore=1;MGOF=27;MMLQ=12;MQ=59.98;NF=71;NR=57;PP=83;QD=0.7578125;SC=TGTTTTTTTTTCATCATTCTC;SbPval=0.72;Source=Platypus;TC=23270;TCF=13143;TCR=10127;TR=128;WE=150981;WS=150948 GT:GL:GOF:GQ:NR:NV 0/1:-10.17,0.0,-300.0:23:99:447:5 0/0:0.0,-55.87,-300.0:0:99:169:0 0/0:0.0,-37.21,-300.0:0:99:112:0 0/0:0.0,-29.38,-300.0:0:99:90:0 0/0:0.0,-24.93,-300.0:17:99:389:0 0/0:0.0,-32.69,-300.0:1:99:100:1 0/0:0.0,-37.21,-300.0:1:99:118:1 0/0:0.0,-35.7,-300.0:0:99:110:0 0/0:0.0,-75.44,-300.0:3:99:238:3 0/0:0.0,-188.16,-300.0:18:99:618:4 0/0:0.0,-250.86,-300.0:19:99:804:4 0/0:0.0,-172.59,-300.0:17:99:542:4 0/0:0.0,-210.82,-300.0:16:99:689:2 0/0:0.0,-216.12,-300.0:16:99:699:3 0/0:0.0,-208.63,-300.0:18:99:682:2 0/0:0.0,-230.0,-300.0:16:99:760:6 0/0:0.0,-203.0,-300.0:16:99:650:2 0/0:0.0,-202.55,-300.0:16:99:661:4 0/0:0.0,-254.22,-300.0:16:99:820:4 0/0:0.0,-300.0,-300.0:17:99:2331:13 0/0:0.0,-184.39,-300.0:16:99:599:5 0/0:0.0,-300.0,-300.0:19:99:1336:11 0/0:0.0,-186.47,-300.0:18:99:618:5 0/0:0.0,-300.0,-300.0:16:99:1036:3 0/0:0.0,-180.7,-300.0:16:99:582:2 0/0:0.0,-199.06,-300.0:19:99:642:4 0/0:0.0,-225.69,-300.0:17:99:760:5 0/0:0.0,-288.16,-300.0:18:99:944:1 0/0:0.0,-35.93,-300.0:13:99:109:3 0/0:0.0,-65.8,-300.0:8:99:214:1 0/0:0.0,-52.86,-300.0:4:99:166:0 0/0:0.0,-70.32,-300.0:3:99:223:0 0/0:0.0,-63.32,-300.0:9:99:193:2 0/0:0.0,-59.37,-300.0:9:99:189:3 0/0:0.0,-46.76,-300.0:3:99:144:1 0/0:0.0,-60.99,-300.0:5:99:189:2 0/0:0.0,-64.99,-300.0:5:99:204:0 0/0:0.0,-71.83,-300.0:5:99:228:2 0/0:0.0,-76.53,-300.0:3:99:246:0 0/0:0.0,-91.69,-300.0:3:99:291:2 0/0:0.0,-53.46,-300.0:3:99:162:1 0/0:0.0,-54.06,-300.0:4:99:168:1 0/0:0.0,-57.08,-300.0:3:99:173:1 0/0:0.0,-48.95,-300.0:4:99:150:2 0/0:0.0,-67.93,-300.0:6:99:223:5 0/0:0.0,-220.66,-300.0:16:99:720:1 0/0:0.0,-117.46,-300.0:26:99:394:1 0/0:0.0,-158.8,-300.0:27:99:516:1 0/0:0.0,-249.61,-300.0:18:99:822:5 chrXII 150970 . CATCA C 64 badReads;QD;alleleBias BRF=0.03;FR=0.0102;HP=9;HapScore=1;MGOF=27;MMLQ=12;MQ=59.98;NF=68;NR=57;PP=64;QD=0.776;SC=GTTTTTTTTTCATCATTCTCT;SbPval=0.74;Source=Platypus;TC=23584;TCF=13283;TCR=10301;TR=125;WE=150981;WS=150948 GT:GL:GOF:GQ:NR:NV 0/1:-10.17,0.0,-300.0:23:99:452:5 0/0:0.0,-55.87,-300.0:0:99:177:0 0/0:0.0,-37.21,-300.0:0:99:122:0 0/0:0.0,-29.38,-300.0:0:99:92:0 0/0:0.0,-24.93,-300.0:17:99:396:0 0/0:0.0,-32.69,-300.0:1:99:103:1 0/0:0.0,-37.21,-300.0:1:99:117:1 0/0:0.0,-35.7,-300.0:0:99:114:0 0/0:0.0,-75.44,-300.0:3:99:247:3 0/0:0.0,-188.16,-300.0:18:99:617:3 0/0:0.0,-250.86,-300.0:19:99:815:4 0/0:0.0,-172.59,-300.0:17:99:554:4 0/0:0.0,-213.61,-300.0:16:99:698:2 0/0:0.0,-216.12,-300.0:16:99:714:3 0/0:0.0,-208.63,-300.0:18:99:683:2 0/0:0.0,-230.0,-300.0:16:99:766:6 0/0:0.0,-203.0,-300.0:16:99:665:2 0/0:0.0,-202.55,-300.0:16:99:660:4 0/0:0.0,-254.22,-300.0:16:99:827:4 0/0:0.0,-300.0,-300.0:17:99:2343:13 0/0:0.0,-184.39,-300.0:16:99:601:4 0/0:0.0,-300.0,-300.0:19:99:1343:10 0/0:0.0,-186.47,-300.0:18:99:625:5 0/0:0.0,-300.0,-300.0:16:99:1052:3 0/0:0.0,-180.7,-300.0:16:99:587:2 0/0:0.0,-199.06,-300.0:19:99:651:4 0/0:0.0,-227.98,-300.0:17:99:761:5 0/0:0.0,-288.44,-300.0:18:99:964:1 0/0:0.0,-35.93,-300.0:13:99:116:3 0/0:0.0,-65.8,-300.0:8:99:222:1 0/0:0.0,-52.86,-300.0:4:99:170:0 0/0:0.0,-70.32,-300.0:3:99:227:0 0/0:0.0,-63.32,-300.0:9:99:201:2 0/0:0.0,-59.37,-300.0:9:99:193:3 0/0:0.0,-46.76,-300.0:3:99:148:1 0/0:0.0,-60.99,-300.0:5:99:195:2 0/0:0.0,-64.99,-300.0:5:99:210:0 0/0:0.0,-71.83,-300.0:5:99:233:2 0/0:0.0,-76.53,-300.0:3:99:252:0 0/0:0.0,-91.69,-300.0:3:99:298:2 0/0:0.0,-53.46,-300.0:3:99:171:1 0/0:0.0,-54.06,-300.0:4:99:173:1 0/0:0.0,-57.08,-300.0:3:99:180:1 0/0:0.0,-48.95,-300.0:4:99:154:2 0/0:0.0,-67.93,-300.0:6:99:227:5 0/0:0.0,-220.66,-300.0:16:99:720:1 0/0:0.0,-117.46,-300.0:26:99:392:1 0/0:0.0,-158.8,-300.0:27:99:518:1 0/0:0.0,-253.99,-300.0:18:99:838:5 chrXII 156824 . TGTGTAGAACCTCA T 111 QD;alleleBias BRF=0.02;FR=0.0102;HP=1;HapScore=1;MGOF=17;MMLQ=38;MQ=59.97;NF=17;NR=19;PP=111;QD=4.0;SC=CGTAATCTTATGTGTAGAACC;SbPval=1.0;Source=Platypus;TC=22570;TCF=10614;TCR=11956;TR=36;WE=156844;WS=156814 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-135.64,-300.0:9:99:447:1 0/0:0.0,-68.51,-300.0:0:99:230:0 0/0:0.0,-56.47,-300.0:1:99:185:0 0/0:0.0,-37.21,-300.0:0:99:127:0 0/0:0.0,-117.82,-300.0:9:99:394:1 0/0:0.0,-30.28,-300.0:1:99:106:1 0/0:0.0,-51.36,-300.0:1:99:167:0 0/0:0.0,-38.41,-300.0:1:99:128:0 0/0:0.0,-59.78,-300.0:1:99:197:0 0/0:0.0,-160.28,-300.0:11:99:556:2 0/0:0.0,-209.67,-300.0:13:99:697:1 0/0:0.0,-156.72,-300.0:11:99:518:1 0/0:0.0,-186.78,-300.0:15:99:631:1 0/0:0.0,-204.8,-300.0:15:99:709:1 0/0:0.0,-192.99,-300.0:12:99:653:1 0/0:0.0,-246.12,-300.0:10:99:829:1 0/0:0.0,-191.56,-300.0:12:99:639:1 0/0:0.0,-183.48,-300.0:13:99:625:1 0/0:0.0,-227.41,-300.0:11:99:765:0 0/0:0.0,-300.0,-300.0:14:99:2196:4 0/0:0.0,-163.89,-300.0:12:99:558:0 0/0:0.0,-300.0,-300.0:11:99:1218:2 0/0:0.0,-186.79,-300.0:12:99:629:0 0/0:0.0,-280.66,-300.0:11:99:949:0 0/0:0.0,-147.38,-300.0:12:99:513:0 0/0:0.0,-185.31,-300.0:8:99:620:1 0/0:0.0,-219.63,-300.0:13:99:746:0 0/0:0.0,-278.55,-300.0:12:99:948:0 0/0:0.0,-44.43,-300.0:3:99:150:1 0/0:0.0,-69.42,-300.0:2:99:232:2 0/0:0.0,-54.67,-300.0:2:99:184:0 0/0:0.0,-69.72,-300.0:3:99:230:0 0/0:0.0,-59.78,-300.0:2:99:198:0 0/0:0.0,-58.28,-300.0:2:99:192:0 0/0:0.0,-38.41,-300.0:9:99:123:0 0/0:0.0,-50.45,-300.0:2:99:170:1 0/0:0.0,-64.0,-300.0:2:99:220:2 0/0:0.0,-63.7,-300.0:2:99:216:0 0/0:0.0,-56.77,-300.0:2:99:198:1 0/0:0.0,-70.62,-300.0:3:99:244:0 0/0:0.0,-46.54,-300.0:1:99:154:0 0/0:0.0,-45.03,-300.0:3:99:150:1 0/0:0.0,-47.44,-300.0:1:99:162:1 1/0:-14.84,0.0,-300.0:3:99:176:2 0/0:0.0,-67.31,-300.0:2:99:227:0 0/0:0.0,-224.7,-300.0:17:99:767:2 0/0:0.0,-110.91,-300.0:15:99:377:0 0/0:0.0,-145.55,-300.0:12:99:488:2 0/0:0.0,-218.68,-300.0:13:99:732:1 chrXII 161646 . TC T 1631 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=1;HapScore=1;MGOF=28;MMLQ=12;MQ=59.93;NF=218;NR=249;PP=1631;QD=3.5974965736;SC=AGGCACTTATTCAACTAAAAA;SbPval=0.34;Source=Platypus;TC=21899;TCF=10828;TCR=11071;TR=467;WE=161682;WS=161600 GT:GL:GOF:GQ:NR:NV 1/0:-65.29,0.0,-300.0:23:99:315:5 0/0:0.0,-48.68,-300.0:1:99:158:9 0/0:0.0,-36.21,-300.0:1:99:126:5 0/0:0.0,-22.86,-300.0:2:99:73:3 1/0:-103.61,0.0,-300.0:27:99:344:5 0/0:0.0,-24.3,-300.0:2:99:79:5 0/0:0.0,-39.31,-300.0:2:99:122:10 0/0:0.0,-31.14,-300.0:2:99:97:3 0/0:0.0,-46.31,-300.0:22:99:196:10 0/0:0.0,-164.68,-300.0:20:99:568:13 0/0:0.0,-207.04,-300.0:24:99:731:9 0/0:0.0,-157.3,-300.0:22:99:528:10 0/0:0.0,-185.91,-300.0:21:99:655:16 0/0:0.0,-192.25,-300.0:25:99:645:7 0/0:0.0,-165.62,-300.0:22:99:608:9 0/0:0.0,-210.75,-300.0:23:99:739:20 0/0:0.0,-181.37,-300.0:21:99:645:13 0/0:0.0,-170.9,-300.0:23:99:573:8 0/0:0.0,-208.38,-300.0:19:99:734:11 0/0:0.0,-300.0,-300.0:22:99:2133:39 0/0:0.0,-154.29,-300.0:22:99:548:10 0/0:0.0,-300.0,-300.0:21:99:1130:22 0/0:0.0,-188.23,-300.0:24:99:665:13 0/0:0.0,-265.24,-300.0:22:99:956:15 0/0:0.0,-153.76,-300.0:21:99:510:11 0/0:0.0,-169.5,-300.0:18:99:591:4 0/0:0.0,-211.27,-300.0:23:99:726:11 0/0:0.0,-247.3,-300.0:24:99:874:15 0/0:0.0,-32.47,-300.0:28:99:137:3 0/0:0.0,-38.93,-300.0:20:99:186:7 0/0:0.0,-23.88,-300.0:22:99:129:10 0/0:0.0,-60.93,-300.0:17:99:209:8 0/0:0.0,-39.11,-300.0:19:99:150:7 0/0:0.0,-46.4,-300.0:22:99:177:4 0/0:0.0,-37.4,-300.0:22:99:145:2 0/0:0.0,-40.61,-300.0:19:99:175:10 0/0:0.0,-43.06,-300.0:21:99:172:5 0/0:0.0,-54.44,-300.0:23:99:188:4 0/0:0.0,-46.65,-300.0:20:99:205:8 0/0:0.0,-52.2,-300.0:17:99:202:12 0/0:0.0,-35.89,-300.0:27:99:185:6 0/0:0.0,-38.95,-300.0:17:99:137:6 0/0:0.0,-36.21,-300.0:23:99:138:6 0/0:0.0,-42.74,-300.0:25:99:145:4 0/0:0.0,-48.57,-300.0:19:99:183:5 0/0:0.0,-198.05,-300.0:22:99:675:16 0/0:0.0,-139.15,-300.0:22:99:469:5 0/0:0.0,-201.13,-300.0:21:99:747:11 0/0:0.0,-300.0,-300.0:24:99:1076:17 chrXII 161649 . AC A 2051 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=1;HapScore=1;MGOF=28;MMLQ=12;MQ=59.93;NF=220;NR=250;PP=2051;QD=4.46815085079;SC=CACTTATTCAACTAAAAAAAA;SbPval=0.42;Source=Platypus;TC=21677;TCF=10827;TCR=10850;TR=470;WE=161682;WS=161600 GT:GL:GOF:GQ:NR:NV 1/0:-83.78,0.0,-300.0:23:99:306:6 0/0:0.0,-48.68,-300.0:1:99:155:9 0/0:0.0,-36.21,-280.01:1:99:118:5 0/0:0.0,-22.86,-189.05:2:99:72:3 1/0:-127.13,0.0,-300.0:27:99:349:5 0/0:0.0,-24.3,-200.27:2:99:78:5 0/0:0.0,-39.31,-293.83:2:99:120:10 0/0:0.0,-31.14,-235.48:2:99:91:3 0/0:0.0,-46.31,-300.0:22:99:187:10 0/0:0.0,-164.68,-300.0:20:99:573:13 0/0:0.0,-207.04,-300.0:24:99:719:9 0/0:0.0,-157.3,-300.0:22:99:528:10 0/0:0.0,-185.91,-300.0:21:99:649:16 0/0:0.0,-192.25,-300.0:25:99:643:7 0/0:0.0,-165.62,-300.0:22:99:604:9 0/0:0.0,-210.75,-300.0:23:99:744:20 0/0:0.0,-181.37,-300.0:21:99:631:13 0/0:0.0,-170.9,-300.0:23:99:563:8 0/0:0.0,-208.38,-300.0:19:99:737:11 0/0:0.0,-300.0,-300.0:22:99:2114:39 0/0:0.0,-154.29,-300.0:22:99:541:10 0/0:0.0,-300.0,-300.0:21:99:1115:22 0/0:0.0,-188.23,-300.0:24:99:668:13 0/0:0.0,-265.24,-300.0:22:99:939:16 0/0:0.0,-153.76,-300.0:21:99:509:11 0/0:0.0,-169.5,-300.0:18:99:581:4 0/0:0.0,-211.27,-300.0:23:99:727:11 0/0:0.0,-247.3,-300.0:24:99:868:15 0/0:0.0,-32.47,-274.93:28:99:132:3 0/0:0.0,-38.93,-300.0:20:99:182:7 0/0:0.0,-23.88,-257.64:22:99:130:10 0/0:0.0,-60.93,-300.0:17:99:205:8 0/0:0.0,-39.11,-300.0:19:99:148:7 0/0:0.0,-46.4,-300.0:22:99:168:4 0/0:0.0,-37.4,-286.47:22:99:139:2 0/0:0.0,-40.61,-300.0:19:99:172:10 0/0:0.0,-43.06,-300.0:21:99:168:6 0/0:0.0,-54.44,-300.0:23:99:183:4 0/0:0.0,-46.65,-300.0:20:99:202:8 0/0:0.0,-52.2,-300.0:17:99:199:12 0/0:0.0,-35.89,-300.0:27:99:180:6 0/0:0.0,-38.95,-293.41:17:99:134:6 0/0:0.0,-36.21,-278.3:23:99:138:6 0/0:0.0,-42.74,-300.0:25:99:141:4 0/0:0.0,-48.57,-300.0:19:99:179:5 0/0:0.0,-198.05,-300.0:22:99:671:16 0/0:0.0,-139.15,-300.0:22:99:463:5 0/0:0.0,-201.13,-300.0:21:99:736:11 0/0:0.0,-300.0,-300.0:24:99:1078:17 chrXII 161650 . CT C 2267 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=2;HapScore=1;MGOF=28;MMLQ=12;MQ=59.92;NF=220;NR=255;PP=2267;QD=4.86315789474;SC=ACTTATTCAACTAAAAAAAAA;SbPval=0.42;Source=Platypus;TC=21765;TCF=10899;TCR=10866;TR=475;WE=161682;WS=161600 GT:GL:GOF:GQ:NR:NV 1/0:-83.78,0.0,-300.0:23:99:307:6 0/0:0.0,-48.68,-300.0:1:99:153:9 0/0:0.0,-36.21,-280.01:1:99:114:5 0/0:0.0,-22.86,-189.05:2:99:70:3 1/0:-148.15,0.0,-300.0:27:99:351:5 0/0:0.0,-24.3,-200.27:2:99:76:5 0/0:0.0,-39.31,-293.83:2:99:121:10 0/0:0.0,-31.14,-235.48:2:99:90:3 0/0:0.0,-46.31,-300.0:22:99:187:10 0/0:0.0,-160.9,-300.0:20:99:574:13 0/0:0.0,-207.04,-300.0:24:99:718:9 0/0:0.0,-157.3,-300.0:22:99:528:10 0/0:0.0,-167.32,-300.0:21:99:652:16 0/0:0.0,-191.46,-300.0:25:99:648:7 0/0:0.0,-165.62,-300.0:22:99:604:9 0/0:0.0,-193.82,-300.0:23:99:744:21 0/0:0.0,-171.44,-300.0:21:99:633:13 0/0:0.0,-165.52,-300.0:23:99:566:8 0/0:0.0,-207.3,-300.0:19:99:737:11 0/0:0.0,-300.0,-300.0:22:99:2129:39 0/0:0.0,-151.69,-300.0:22:99:545:11 0/0:0.0,-284.37,-300.0:21:99:1128:22 0/0:0.0,-188.13,-300.0:24:99:676:13 0/0:0.0,-251.97,-300.0:22:99:953:16 0/0:0.0,-139.9,-300.0:21:99:504:11 0/0:0.0,-163.14,-300.0:18:99:588:5 0/0:0.0,-209.84,-300.0:23:99:727:11 0/0:0.0,-230.48,-300.0:24:99:874:16 0/0:0.0,-32.47,-274.92:28:99:134:3 0/0:0.0,-38.93,-300.0:20:99:181:7 0/0:0.0,-23.88,-257.64:22:99:129:10 0/0:0.0,-60.93,-300.0:17:99:207:8 0/0:0.0,-39.11,-300.0:19:99:147:7 0/0:0.0,-46.4,-300.0:22:99:169:4 0/0:0.0,-37.4,-274.98:22:99:141:2 0/0:0.0,-40.61,-300.0:19:99:172:10 0/0:0.0,-43.06,-300.0:21:99:172:6 0/0:0.0,-54.44,-300.0:23:99:185:4 0/0:0.0,-46.65,-300.0:20:99:202:8 0/0:0.0,-52.2,-300.0:17:99:201:12 0/0:0.0,-32.7,-300.0:27:99:179:6 0/0:0.0,-38.95,-292.94:17:99:132:6 0/0:0.0,-36.21,-277.87:23:99:138:6 0/0:0.0,-42.74,-300.0:25:99:140:4 0/0:0.0,-48.57,-300.0:19:99:182:6 0/0:0.0,-193.15,-300.0:22:99:676:16 0/0:0.0,-139.15,-300.0:22:99:464:5 0/0:0.0,-200.74,-300.0:21:99:735:11 0/0:0.0,-269.79,-300.0:24:99:1082:17 chrXII 161651 . T TA 1529 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=16;HapScore=1;MGOF=28;MMLQ=12;MQ=59.92;NF=217;NR=257;PP=1529;QD=3.23206751055;SC=CTTATTCAACTAAAAAAAAAA;SbPval=0.51;Source=Platypus;TC=23424;TCF=11840;TCR=11584;TR=474;WE=161682;WS=161600 GT:GL:GOF:GQ:NR:NV 1/0:-69.92,0.0,-279.92:23:99:332:6 0/0:0.0,-48.58,-156.58:1:99:155:7 0/0:0.0,-36.21,-127.08:1:99:119:5 0/0:0.0,-22.86,-106.55:2:99:75:3 1/0:-83.85,0.0,-286.92:27:99:385:6 0/0:0.0,-24.3,-107.55:2:99:81:4 0/0:0.0,-39.31,-146.28:2:99:129:8 0/0:0.0,-31.14,-126.58:2:99:102:3 0/0:0.0,-46.31,-214.68:22:99:192:10 0/0:0.0,-150.02,-300.0:20:99:614:13 0/0:0.0,-198.01,-300.0:24:99:796:9 0/0:0.0,-147.08,-300.0:22:99:560:9 0/0:0.0,-167.32,-300.0:21:99:717:16 0/0:0.0,-171.7,-300.0:25:99:699:7 0/0:0.0,-165.52,-300.0:22:99:650:9 0/0:0.0,-190.76,-300.0:23:99:802:22 0/0:0.0,-167.04,-300.0:21:99:688:13 0/0:0.0,-157.17,-300.0:23:99:603:8 0/0:0.0,-191.58,-300.0:19:99:804:11 0/0:0.0,-300.0,-300.0:22:99:2273:41 0/0:0.0,-149.05,-300.0:22:99:593:12 0/0:0.0,-275.34,-300.0:21:99:1213:22 0/0:0.0,-180.33,-300.0:24:99:729:13 0/0:0.0,-237.2,-300.0:22:99:1027:16 0/0:0.0,-136.8,-300.0:21:99:543:10 0/0:0.0,-155.63,-300.0:18:99:626:5 0/0:0.0,-193.37,-300.0:23:99:771:11 0/0:0.0,-218.98,-300.0:24:99:945:16 0/0:0.0,-32.47,-169.62:28:99:150:3 0/0:0.0,-38.93,-207.67:20:99:185:8 0/0:0.0,-23.88,-152.71:22:99:140:10 0/0:0.0,-60.93,-220.28:17:99:227:8 0/0:0.0,-39.11,-175.75:19:99:157:7 0/0:0.0,-46.4,-197.28:22:99:172:4 0/0:0.0,-37.4,-160.85:22:99:149:2 0/0:0.0,-40.61,-193.46:19:99:183:10 0/0:0.0,-43.06,-201.99:21:99:186:6 0/0:0.0,-54.44,-217.48:23:99:197:4 0/0:0.0,-46.65,-224.18:20:99:212:7 0/0:0.0,-52.2,-229.28:17:99:217:12 0/0:0.0,-32.7,-186.09:27:99:189:6 0/0:0.0,-38.95,-177.78:17:99:141:6 0/0:0.0,-36.21,-169.46:23:99:142:6 0/0:0.0,-42.74,-173.18:25:99:151:4 0/0:0.0,-48.57,-210.87:19:99:192:7 0/0:0.0,-180.77,-300.0:22:99:727:16 0/0:0.0,-136.34,-300.0:22:99:515:5 0/0:0.0,-189.06,-300.0:21:99:792:11 0/0:0.0,-263.71,-300.0:24:99:1177:17 chrXII 165622 . T TAAAAAAAAAAA 61 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=2;HapScore=1;MGOF=16;MMLQ=12;MQ=59.98;NF=30;NR=36;PP=61;QD=2.43939393939;SC=TAGCTTCGTTTATCTTAGTGG;SbPval=0.93;Source=Platypus;TC=21278;TCF=10176;TCR=11102;TR=66;WE=165641;WS=165612 GT:GL:GOF:GQ:NR:NV 1/0:-16.49,0.0,-300.0:10:99:432:12 0/0:0.0,-64.88,-300.0:1:99:198:1 0/0:0.0,-54.27,-300.0:1:99:161:0 0/0:0.0,-33.87,-300.0:2:99:99:0 0/0:0.0,-38.62,-300.0:12:99:363:12 0/0:0.0,-33.57,-300.0:2:99:101:1 0/0:0.0,-51.31,-300.0:1:99:157:1 0/0:0.0,-46.5,-300.0:1:99:136:0 0/0:0.0,-77.1,-300.0:3:99:234:2 0/0:0.0,-142.22,-300.0:14:99:448:1 0/0:0.0,-212.27,-300.0:15:99:667:2 0/0:0.0,-156.47,-300.0:11:99:484:0 0/0:0.0,-186.72,-300.0:12:99:591:1 0/0:0.0,-183.97,-300.0:16:99:591:0 0/0:0.0,-183.92,-300.0:13:99:571:0 0/0:0.0,-242.0,-300.0:13:99:759:3 0/0:0.0,-165.64,-300.0:11:99:523:1 0/0:0.0,-167.44,-300.0:14:99:522:3 0/0:0.0,-220.0,-300.0:13:99:689:0 0/0:0.0,-300.0,-300.0:15:99:1912:0 0/0:0.0,-168.71,-300.0:14:99:525:1 0/0:0.0,-300.0,-300.0:14:99:1163:1 0/0:0.0,-202.52,-300.0:12:99:647:2 0/0:0.0,-297.47,-300.0:12:99:928:1 0/0:0.0,-153.89,-300.0:14:99:488:0 0/0:0.0,-143.85,-300.0:14:99:510:0 0/0:0.0,-223.35,-300.0:11:99:698:0 0/0:0.0,-275.78,-300.0:12:99:872:1 0/0:0.0,-52.24,-300.0:1:99:154:1 0/0:0.0,-68.21,-300.0:4:99:203:3 0/0:0.0,-49.53,-300.0:1:99:146:0 0/0:0.0,-72.08,-300.0:1:99:220:0 0/0:0.0,-63.98,-300.0:1:99:188:0 0/0:0.0,-57.03,-300.0:3:99:171:0 0/0:0.0,-42.0,-300.0:2:99:127:0 0/0:0.0,-59.12,-300.0:3:99:179:3 0/0:0.0,-64.0,-300.0:2:99:195:1 0/0:0.0,-66.69,-300.0:2:99:200:1 0/0:0.0,-65.44,-300.0:3:99:207:1 0/0:0.0,-74.84,-300.0:3:99:233:1 0/0:0.0,-56.47,-300.0:3:99:173:0 0/0:0.0,-52.66,-300.0:1:99:162:0 0/0:0.0,-47.12,-300.0:2:99:142:2 0/0:0.0,-68.19,-300.0:2:99:217:2 0/0:0.0,-60.69,-300.0:5:99:180:0 0/0:0.0,-201.88,-300.0:16:99:660:2 0/0:0.0,-135.56,-300.0:14:99:435:1 0/0:0.0,-211.69,-300.0:15:99:669:2 0/0:0.0,-299.16,-300.0:15:99:948:0 chrXII 165623 . ATCTTAGTGGCC A 118 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=4;HapScore=1;MGOF=16;MMLQ=12;MQ=59.98;NF=31;NR=37;PP=118;QD=2.36764705882;SC=AGCTTCGTTTATCTTAGTGGC;SbPval=0.93;Source=Platypus;TC=22179;TCF=10469;TCR=11710;TR=68;WE=165641;WS=165612 GT:GL:GOF:GQ:NR:NV 1/0:-16.49,0.0,-300.0:10:99:444:12 0/0:0.0,-64.88,-300.0:1:99:212:2 0/0:0.0,-54.27,-300.0:1:99:178:0 0/0:0.0,-33.87,-300.0:2:99:104:0 0/0:0.0,-38.62,-300.0:12:99:382:12 0/0:0.0,-33.57,-300.0:2:99:107:1 0/0:0.0,-51.31,-300.0:1:99:166:1 0/0:0.0,-46.5,-300.0:1:99:146:0 0/0:0.0,-77.1,-300.0:3:99:246:2 0/0:0.0,-142.22,-300.0:14:99:467:1 0/0:0.0,-212.27,-300.0:15:99:698:2 0/0:0.0,-156.47,-300.0:11:99:495:0 0/0:0.0,-186.72,-300.0:12:99:612:1 0/0:0.0,-183.97,-300.0:16:99:608:0 0/0:0.0,-183.92,-300.0:13:99:595:0 0/0:0.0,-242.0,-300.0:13:99:773:3 0/0:0.0,-165.64,-300.0:11:99:545:1 0/0:0.0,-167.44,-300.0:14:99:544:3 0/0:0.0,-220.0,-300.0:13:99:714:0 0/0:0.0,-300.0,-300.0:15:99:1984:0 0/0:0.0,-168.71,-300.0:14:99:549:1 0/0:0.0,-300.0,-300.0:14:99:1221:1 0/0:0.0,-202.52,-300.0:12:99:670:2 0/0:0.0,-297.47,-300.0:12:99:975:2 0/0:0.0,-153.89,-300.0:14:99:506:0 0/0:0.0,-143.85,-300.0:14:99:520:0 0/0:0.0,-223.35,-300.0:11:99:722:0 0/0:0.0,-275.78,-300.0:12:99:906:1 0/0:0.0,-52.24,-300.0:1:99:165:1 0/0:0.0,-68.21,-300.0:4:99:218:3 0/0:0.0,-49.53,-300.0:1:99:157:0 0/0:0.0,-72.08,-300.0:1:99:232:0 0/0:0.0,-63.98,-300.0:1:99:204:0 0/0:0.0,-57.03,-300.0:3:99:184:0 0/0:0.0,-42.0,-300.0:2:99:133:0 0/0:0.0,-59.12,-300.0:3:99:189:3 0/0:0.0,-64.0,-300.0:2:99:209:1 0/0:0.0,-66.69,-300.0:2:99:214:1 0/0:0.0,-65.44,-300.0:3:99:212:1 0/0:0.0,-74.84,-300.0:3:99:248:1 0/0:0.0,-56.47,-300.0:3:99:181:0 0/0:0.0,-52.66,-300.0:1:99:174:0 0/0:0.0,-47.12,-300.0:2:99:149:2 0/0:0.0,-68.19,-300.0:2:99:226:2 0/0:0.0,-60.69,-300.0:5:99:192:0 0/0:0.0,-201.88,-300.0:16:99:679:2 0/0:0.0,-135.56,-300.0:14:99:442:1 0/0:0.0,-211.69,-300.0:15:99:705:2 0/0:0.0,-299.16,-300.0:15:99:977:0 chrXII 172018 . AAT AATAT,A 71 badReads;QD;alleleBias BRF=0.02;FR=0.0101,0.0203;HP=2;HapScore=1;MGOF=29;MMLQ=9;MQ=59.78;NF=277,277;NR=270,270;PP=16,71;QD=0.0347349177331;SC=TTAATACGTAAATATATATAT;SbPval=0.78;Source=Platypus;TC=19789;TCF=9050;TCR=10739;TR=547,547;WE=172031;WS=171978 GT:GL:GOF:GQ:NR:NV 0/0:-1,-1,-1:25:99:427,427:16,16 0/0:-1,-1,-1:3:77:151,151:9,9 1/0:-1,-1,-1:4:21:111,111:5,5 0/2:-1,-1,-1:4:17:88,88:6,6 0/0:-1,-1,-1:21:99:335,335:6,6 0/0:-1,-1,-1:2:47:86,86:3,3 0/2:-1,-1,-1:3:63:124,124:9,9 0/0:-1,-1,-1:5:20:97,97:5,5 0/0:-1,-1,-1:17:99:204,204:3,3 0/0:-1,-1,-1:29:99:466,466:11,11 0/0:-1,-1,-1:23:99:638,638:21,21 0/0:-1,-1,-1:23:99:507,507:12,12 0/0:-1,-1,-1:23:99:554,554:13,13 0/0:-1,-1,-1:28:99:540,540:20,20 0/0:-1,-1,-1:23:99:554,554:12,12 0/0:-1,-1,-1:26:99:753,753:36,36 0/0:-1,-1,-1:22:99:578,578:10,10 0/0:-1,-1,-1:26:99:472,472:12,12 0/0:-1,-1,-1:26:99:687,687:18,18 0/0:-1,-1,-1:26:99:1860,1860:51,51 0/0:-1,-1,-1:25:99:501,501:15,15 0/0:-1,-1,-1:25:99:1027,1027:28,28 0/0:-1,-1,-1:26:99:589,589:13,13 0/0:-1,-1,-1:28:99:832,832:30,30 0/0:-1,-1,-1:28:99:476,476:10,10 0/0:-1,-1,-1:25:99:480,480:16,16 0/0:-1,-1,-1:26:99:607,607:11,11 0/0:-1,-1,-1:26:99:727,727:24,24 0/0:-1,-1,-1:19:99:120,120:3,3 0/0:-1,-1,-1:19:99:164,164:3,3 0/0:-1,-1,-1:24:99:147,147:3,3 0/0:-1,-1,-1:25:99:211,211:5,5 0/0:-1,-1,-1:19:99:165,165:3,3 0/0:-1,-1,-1:19:99:176,176:2,2 0/0:-1,-1,-1:17:99:118,118:0,0 0/0:-1,-1,-1:16:99:159,159:5,5 0/0:-1,-1,-1:16:99:157,157:3,3 0/0:-1,-1,-1:19:99:185,185:4,4 0/0:-1,-1,-1:16:99:193,193:6,6 0/0:-1,-1,-1:21:99:187,187:4,4 0/0:-1,-1,-1:22:99:164,164:4,4 0/0:-1,-1,-1:21:99:158,158:2,2 0/0:-1,-1,-1:16:99:140,140:5,5 0/0:-1,-1,-1:19:99:186,186:4,4 0/0:-1,-1,-1:17:99:158,158:4,4 0/0:-1,-1,-1:27:99:591,591:11,11 0/0:-1,-1,-1:27:99:423,423:8,8 0/0:-1,-1,-1:28:99:623,623:11,11 0/0:-1,-1,-1:29:99:893,893:32,32 chrXII 177529 . GC G 145 QD;alleleBias BRF=0.03;FR=0.0102;HP=3;HapScore=1;MGOF=22;MMLQ=32;MQ=59.96;NF=39;NR=65;PP=145;QD=1.68269230769;SC=TGAAAAGAAAGCAAAAAAAAG;SbPval=1.0;Source=Platypus;TC=21024;TCF=9015;TCR=12009;TR=104;WE=177542;WS=177509 GT:GL:GOF:GQ:NR:NV 1/0:-17.89,0.0,-300.0:20:99:405:1 0/0:0.0,-59.42,-300.0:0:99:203:1 0/0:0.0,-45.64,-300.0:0:99:152:0 0/0:0.0,-26.77,-283.67:0:99:86:0 0/0:0.0,-11.86,-300.0:17:99:362:0 0/0:0.0,-33.71,-300.0:1:99:107:0 0/0:0.0,-41.09,-300.0:1:99:135:0 0/0:0.0,-33.17,-300.0:1:99:110:0 0/0:0.0,-63.28,-300.0:4:99:237:3 0/0:0.0,-113.17,-300.0:17:99:464:2 0/0:0.0,-130.92,-300.0:21:99:657:2 0/0:0.0,-93.89,-300.0:18:99:481:0 0/0:0.0,-97.2,-300.0:19:99:548:0 0/0:0.0,-105.59,-300.0:19:99:532:2 0/0:0.0,-108.35,-300.0:21:99:510:2 0/0:0.0,-124.09,-300.0:17:99:707:5 0/0:0.0,-117.19,-300.0:19:99:545:3 0/0:0.0,-103.03,-300.0:17:99:494:5 0/0:0.0,-118.87,-300.0:17:99:599:0 0/0:0.0,-300.0,-300.0:22:99:1963:14 0/0:0.0,-89.15,-300.0:17:99:492:1 0/0:0.0,-180.0,-300.0:18:99:1010:5 0/0:0.0,-129.61,-300.0:19:99:627:3 0/0:0.0,-165.67,-300.0:19:99:839:3 0/0:0.0,-94.09,-300.0:17:99:473:3 0/0:0.0,-115.28,-300.0:18:99:549:1 0/0:0.0,-133.6,-300.0:17:99:645:2 0/0:0.0,-159.57,-300.0:19:99:800:5 0/0:0.0,-53.98,-300.0:7:99:184:4 0/0:0.0,-57.6,-300.0:4:99:218:3 0/0:0.0,-40.41,-300.0:8:99:175:2 0/0:0.0,-64.73,-300.0:8:99:238:2 0/0:0.0,-56.77,-300.0:4:99:212:2 0/0:0.0,-56.44,-300.0:6:99:205:0 0/0:0.0,-27.03,-300.0:7:99:118:0 0/0:0.0,-55.61,-300.0:4:99:196:1 0/0:0.0,-57.19,-300.0:5:99:212:1 0/0:0.0,-52.7,-300.0:7:99:229:2 0/0:0.0,-57.3,-300.0:5:99:224:0 0/0:0.0,-70.93,-300.0:6:99:268:2 0/0:0.0,-54.67,-300.0:5:99:205:0 0/0:0.0,-50.88,-300.0:4:99:197:0 0/0:0.0,-45.71,-300.0:7:99:163:1 0/0:0.0,-59.71,-300.0:11:99:238:1 0/0:0.0,-57.24,-300.0:5:99:211:1 0/0:0.0,-129.89,-300.0:17:99:562:1 0/0:0.0,-97.23,-300.0:19:99:474:3 0/0:0.0,-151.91,-300.0:20:99:745:4 0/0:0.0,-220.01,-300.0:21:99:1018:11 chrXII 177530 . C CA 158 SC;QD;alleleBias BRF=0.03;FR=0.0102;HP=8;HapScore=1;MGOF=22;MMLQ=32;MQ=59.96;NF=39;NR=67;PP=158;QD=1.65094339623;SC=GAAAAGAAAGCAAAAAAAAGA;SbPval=1.0;Source=Platypus;TC=22093;TCF=9687;TCR=12406;TR=106;WE=177542;WS=177509 GT:GL:GOF:GQ:NR:NV 1/0:-17.89,0.0,-300.0:20:99:428:1 0/0:0.0,-59.42,-300.0:0:99:213:1 0/0:0.0,-45.64,-300.0:0:99:165:0 0/0:0.0,-26.77,-216.69:0:99:94:0 0/0:0.0,-11.86,-300.0:17:99:377:0 0/0:0.0,-33.71,-266.16:1:99:114:0 0/0:0.0,-41.09,-300.0:1:99:145:0 0/0:0.0,-33.17,-254.91:1:99:117:0 0/0:0.0,-63.28,-300.0:4:99:244:3 0/0:0.0,-113.17,-300.0:17:99:483:2 0/0:0.0,-130.92,-300.0:21:99:704:2 0/0:0.0,-93.89,-300.0:18:99:504:0 0/0:0.0,-97.2,-300.0:19:99:569:0 0/0:0.0,-105.59,-300.0:19:99:566:2 0/0:0.0,-108.35,-300.0:21:99:544:3 0/0:0.0,-124.09,-300.0:17:99:744:5 0/0:0.0,-117.19,-300.0:19:99:559:3 0/0:0.0,-103.03,-300.0:17:99:515:5 0/0:0.0,-118.87,-300.0:17:99:637:0 0/0:0.0,-300.0,-300.0:22:99:2044:14 0/0:0.0,-89.15,-300.0:17:99:530:1 0/0:0.0,-180.0,-300.0:18:99:1067:5 0/0:0.0,-129.61,-300.0:19:99:665:3 0/0:0.0,-165.67,-300.0:19:99:895:3 0/0:0.0,-94.09,-300.0:17:99:503:3 0/0:0.0,-115.28,-300.0:18:99:574:1 0/0:0.0,-133.6,-300.0:17:99:690:2 0/0:0.0,-159.57,-300.0:19:99:844:6 0/0:0.0,-53.98,-300.0:7:99:186:4 0/0:0.0,-57.6,-300.0:4:99:225:3 0/0:0.0,-40.41,-300.0:8:99:182:2 0/0:0.0,-64.73,-300.0:8:99:245:2 0/0:0.0,-56.77,-300.0:4:99:217:2 0/0:0.0,-56.44,-300.0:6:99:210:0 0/0:0.0,-27.03,-269.66:7:99:123:0 0/0:0.0,-55.61,-300.0:4:99:205:1 0/0:0.0,-57.19,-300.0:5:99:221:1 0/0:0.0,-52.7,-300.0:7:99:247:2 0/0:0.0,-57.3,-300.0:5:99:231:0 0/0:0.0,-70.93,-300.0:6:99:271:2 0/0:0.0,-54.67,-300.0:5:99:215:0 0/0:0.0,-50.88,-300.0:4:99:200:0 0/0:0.0,-45.71,-300.0:7:99:169:1 0/0:0.0,-59.71,-300.0:11:99:247:1 0/0:0.0,-57.24,-300.0:5:99:215:1 0/0:0.0,-129.89,-300.0:17:99:593:1 0/0:0.0,-97.23,-300.0:19:99:499:3 0/0:0.0,-151.91,-300.0:20:99:786:4 0/0:0.0,-220.01,-300.0:21:99:1072:11 chrXII 179766 . TCA T 762 SC;QD;alleleBias BRF=0.02;FR=0.0204;HP=13;HapScore=1;MGOF=43;MMLQ=32;MQ=59.92;NF=270;NR=240;PP=762;QD=1.50196078431;SC=TTTTTTTTTTTCATTTTTCTT;SbPval=0.35;Source=Platypus;TC=20746;TCF=10242;TCR=10504;TR=510;WE=179800;WS=179756 GT:GL:GOF:GQ:NR:NV 0/1:-43.16,0.0,-300.0:42:99:328:5 0/0:0.0,-55.65,-300.0:2:99:185:14 0/0:0.0,-45.21,-300.0:2:99:152:11 0/0:0.0,-26.1,-300.0:1:99:98:4 0/1:-34.09,0.0,-300.0:43:99:303:9 0/0:0.0,-36.13,-300.0:2:99:114:9 0/0:0.0,-43.98,-300.0:2:99:133:9 0/0:0.0,-34.58,-300.0:1:99:104:6 0/0:0.0,-45.24,-300.0:24:99:210:7 0/0:0.0,-117.32,-300.0:30:99:485:13 0/0:0.0,-159.16,-300.0:31:99:646:17 0/0:0.0,-126.41,-300.0:30:99:464:9 0/0:0.0,-111.91,-300.0:33:99:516:11 0/0:0.0,-137.44,-300.0:36:99:597:11 0/0:0.0,-144.61,-300.0:33:99:582:10 0/0:0.0,-179.95,-300.0:30:99:721:19 0/0:0.0,-132.26,-300.0:33:99:602:16 0/0:0.0,-116.48,-300.0:31:99:484:17 0/0:0.0,-130.76,-300.0:34:99:603:14 0/0:0.0,-300.0,-300.0:32:99:1877:33 0/0:0.0,-134.23,-300.0:33:99:500:9 0/0:0.0,-256.24,-300.0:29:99:1043:21 0/0:0.0,-165.1,-300.0:30:99:635:11 0/0:0.0,-213.27,-300.0:33:99:858:18 0/0:0.0,-120.74,-300.0:31:99:466:8 0/0:0.0,-134.25,-300.0:31:99:564:21 0/0:0.0,-168.61,-300.0:31:99:662:16 0/0:0.0,-196.4,-300.0:28:99:833:19 0/0:0.0,-41.88,-300.0:25:99:144:1 0/0:0.0,-47.95,-300.0:25:99:199:5 0/0:0.0,-36.56,-300.0:27:99:147:1 0/0:0.0,-50.95,-300.0:28:99:226:7 0/0:0.0,-39.17,-300.0:23:99:182:3 0/0:0.0,-54.12,-300.0:24:99:222:6 0/0:0.0,-30.46,-300.0:23:99:130:6 0/0:0.0,-40.51,-300.0:29:99:192:7 0/0:0.0,-51.11,-300.0:29:99:207:4 0/0:0.0,-49.41,-300.0:29:99:229:5 0/0:0.0,-40.78,-300.0:27:99:197:10 0/0:0.0,-48.01,-300.0:24:99:198:5 0/0:0.0,-37.36,-300.0:30:99:159:2 0/0:0.0,-26.91,-300.0:29:99:171:5 0/0:0.0,-28.24,-300.0:26:99:156:1 0/0:0.0,-45.01,-300.0:25:99:152:5 0/0:0.0,-30.93,-300.0:28:99:187:3 0/0:0.0,-139.78,-300.0:32:99:588:11 0/0:0.0,-123.1,-300.0:33:99:492:7 0/0:0.0,-165.48,-300.0:34:99:716:20 0/0:0.0,-278.09,-300.0:33:99:1087:29 chrXII 179773 . TC T 738 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=4;HapScore=1;MGOF=43;MMLQ=12;MQ=59.94;NF=259;NR=229;PP=738;QD=1.56557377049;SC=TTTTCATTTTTCTTTAGACTT;SbPval=0.29;Source=Platypus;TC=20315;TCF=10013;TCR=10302;TR=488;WE=179800;WS=179756 GT:GL:GOF:GQ:NR:NV 0/1:-43.16,0.0,-300.0:42:99:350:6 0/0:0.0,-55.65,-300.0:2:99:181:13 0/0:0.0,-45.21,-300.0:2:99:139:10 0/0:0.0,-26.1,-300.0:1:99:92:3 0/1:-34.09,0.0,-300.0:43:99:304:11 0/0:0.0,-36.13,-300.0:2:99:112:6 0/0:0.0,-43.98,-300.0:2:99:132:9 0/0:0.0,-34.58,-300.0:1:99:106:5 0/0:0.0,-45.24,-300.0:24:99:219:6 0/0:0.0,-117.32,-300.0:30:99:468:11 0/0:0.0,-159.16,-300.0:31:99:629:17 0/0:0.0,-126.41,-300.0:30:99:444:8 0/0:0.0,-111.91,-300.0:33:99:493:12 0/0:0.0,-137.44,-300.0:36:99:577:10 0/0:0.0,-144.61,-300.0:33:99:565:12 0/0:0.0,-179.95,-300.0:30:99:691:18 0/0:0.0,-132.26,-300.0:33:99:591:18 0/0:0.0,-116.48,-300.0:31:99:480:16 0/0:0.0,-130.76,-300.0:34:99:591:14 0/0:0.0,-300.0,-300.0:32:99:1811:37 0/0:0.0,-134.23,-300.0:33:99:490:8 0/0:0.0,-256.24,-300.0:29:99:1002:21 0/0:0.0,-165.1,-300.0:30:99:627:13 0/0:0.0,-213.27,-300.0:33:99:856:15 0/0:0.0,-120.74,-300.0:31:99:439:7 0/0:0.0,-134.25,-300.0:31:99:528:19 0/0:0.0,-168.61,-300.0:31:99:640:13 0/0:0.0,-196.4,-300.0:28:99:795:16 0/0:0.0,-41.88,-300.0:25:99:149:1 0/0:0.0,-47.95,-300.0:25:99:198:5 0/0:0.0,-36.56,-300.0:27:99:155:1 0/0:0.0,-50.95,-300.0:28:99:236:7 0/0:0.0,-39.17,-300.0:23:99:190:3 0/0:0.0,-54.12,-300.0:24:99:227:5 0/0:0.0,-30.46,-300.0:23:99:130:5 0/0:0.0,-40.51,-300.0:29:99:195:6 0/0:0.0,-51.11,-300.0:29:99:218:4 0/0:0.0,-49.41,-300.0:29:99:234:5 0/0:0.0,-40.78,-300.0:27:99:200:10 0/0:0.0,-48.01,-300.0:24:99:213:4 0/0:0.0,-37.36,-300.0:30:99:163:2 0/0:0.0,-26.91,-300.0:29:99:180:5 0/0:0.0,-28.24,-300.0:26:99:161:1 0/0:0.0,-45.01,-300.0:25:99:148:5 0/0:0.0,-30.93,-300.0:28:99:181:3 0/0:0.0,-139.78,-300.0:32:99:584:8 0/0:0.0,-123.1,-300.0:33:99:471:6 0/0:0.0,-165.48,-300.0:34:99:684:19 0/0:0.0,-278.09,-300.0:33:99:1046:29 chrXII 179897 . C CT 2884 badReads;alleleBias BRF=0.02;FR=0.0204;HP=14;HapScore=1;MGOF=32;MMLQ=12;MQ=59.91;NF=256;NR=244;PP=2884;QD=20;SC=TTTGGACCCTCTTTTTTTTTT;SbPval=0.3;Source=Platypus;TC=20885;TCF=10638;TCR=10247;TR=500;WE=179929;WS=179874 GT:GL:GOF:GQ:NR:NV 0/1:-159.24,0.0,-300.0:32:99:380:4 0/0:0.0,-35.1,-229.38:3:99:199:6 0/0:0.0,-17.14,-154.18:2:99:132:6 0/0:0.0,-21.64,-145.58:3:99:93:6 0/1:-130.35,0.0,-300.0:29:99:366:10 0/0:0.0,-11.77,-121.71:3:99:89:6 0/0:0.0,-21.51,-154.87:3:99:132:8 0/0:0.0,-25.34,-174.38:2:99:132:7 0/0:0.0,-42.99,-239.22:20:99:196:6 0/0:0.0,-120.41,-300.0:22:99:464:7 0/0:0.0,-149.02,-300.0:25:99:670:17 0/0:0.0,-102.31,-300.0:24:99:469:9 0/0:0.0,-113.16,-300.0:25:99:524:13 0/0:0.0,-127.92,-300.0:25:99:604:7 0/0:0.0,-134.34,-300.0:24:99:597:20 0/0:0.0,-162.21,-300.0:24:99:718:11 0/0:0.0,-140.4,-300.0:24:99:610:19 0/0:0.0,-125.52,-300.0:23:99:547:13 0/0:0.0,-148.41,-300.0:21:99:662:15 0/0:0.0,-300.0,-300.0:27:99:1918:51 0/0:0.0,-118.05,-300.0:24:99:499:6 0/0:0.0,-219.3,-300.0:23:99:1097:25 0/0:0.0,-148.31,-300.0:24:99:624:7 0/0:0.0,-191.04,-300.0:26:99:927:23 0/0:0.0,-96.89,-300.0:24:99:459:7 0/0:0.0,-145.24,-300.0:22:99:570:13 0/0:0.0,-148.37,-300.0:24:99:634:16 0/0:0.0,-165.63,-300.0:23:99:831:18 0/0:0.0,-23.53,-194.59:28:99:149:3 0/0:0.0,-39.98,-250.64:24:99:174:9 0/0:0.0,-33.25,-220.0:23:99:155:5 0/0:0.0,-35.32,-264.41:24:99:216:6 0/0:0.0,-43.47,-248.72:21:99:187:6 0/0:0.0,-39.86,-255.2:19:99:189:7 0/0:0.0,-10.01,-167.45:19:99:126:3 0/0:0.0,-33.67,-219.35:21:99:166:8 0/0:0.0,-29.26,-234.96:22:99:181:7 0/0:0.0,-31.38,-262.96:24:99:222:3 0/0:0.0,-35.49,-275.97:27:99:215:7 0/0:0.0,-43.62,-273.17:23:99:214:6 0/0:0.0,-25.28,-200.22:26:99:152:6 0/0:0.0,-27.67,-212.6:28:99:171:9 0/0:0.0,-22.88,-176.52:22:99:143:3 0/0:0.0,-29.28,-175.44:21:99:123:6 0/0:0.0,-31.76,-239.27:24:99:180:6 0/0:0.0,-132.2,-300.0:21:99:550:5 0/0:0.0,-107.09,-300.0:24:99:463:7 0/0:0.0,-154.84,-300.0:23:99:696:14 0/0:0.0,-232.75,-300.0:25:99:1070:18 chrXII 179910 . TGC T 1125 SC;badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=12;HapScore=1;MGOF=32;MMLQ=12;MQ=59.9;NF=250;NR=236;PP=1125;QD=2.32716049383;SC=TTTTTTTTTTTGCTTTTTTTT;SbPval=0.23;Source=Platypus;TC=19453;TCF=9803;TCR=9650;TR=486;WE=179929;WS=179874 GT:GL:GOF:GQ:NR:NV 0/1:-49.58,0.0,-300.0:32:99:335:4 0/0:0.0,-35.1,-300.0:3:99:183:6 0/0:0.0,-17.14,-292.96:2:99:128:7 0/0:0.0,-21.64,-248.06:3:99:97:7 0/1:-64.23,0.0,-300.0:29:99:335:10 0/0:0.0,-11.77,-212.36:3:99:89:6 0/0:0.0,-21.51,-290.55:3:99:118:10 0/0:0.0,-25.34,-300.0:3:99:133:7 0/0:0.0,-42.99,-300.0:20:99:168:6 0/0:0.0,-120.41,-300.0:22:99:433:7 0/0:0.0,-161.55,-300.0:26:99:636:16 0/0:0.0,-106.08,-300.0:25:99:429:7 0/0:0.0,-123.38,-300.0:26:99:495:11 0/0:0.0,-130.65,-300.0:25:99:552:6 0/0:0.0,-136.93,-300.0:25:99:556:19 0/0:0.0,-172.34,-300.0:24:99:678:10 0/0:0.0,-143.44,-300.0:24:99:569:18 0/0:0.0,-125.52,-300.0:23:99:506:12 0/0:0.0,-152.59,-300.0:21:99:636:13 0/0:0.0,-300.0,-300.0:27:99:1815:47 0/0:0.0,-118.69,-300.0:24:99:463:6 0/0:0.0,-261.05,-300.0:24:99:1035:24 0/0:0.0,-148.31,-300.0:24:99:582:8 0/0:0.0,-209.54,-300.0:27:99:868:23 0/0:0.0,-100.33,-300.0:24:99:429:7 0/0:0.0,-145.24,-300.0:22:99:533:13 0/0:0.0,-148.37,-300.0:24:99:583:14 0/0:0.0,-175.38,-300.0:24:99:765:17 0/0:0.0,-23.53,-300.0:28:99:138:3 0/0:0.0,-39.98,-300.0:25:99:165:9 0/0:0.0,-33.25,-300.0:24:99:145:5 0/0:0.0,-35.32,-300.0:24:99:194:7 0/0:0.0,-43.47,-300.0:22:99:168:6 0/0:0.0,-39.86,-300.0:19:99:178:7 0/0:0.0,-10.01,-297.8:19:99:116:3 0/0:0.0,-33.67,-300.0:21:99:158:8 0/0:0.0,-29.26,-300.0:22:99:173:7 0/0:0.0,-31.38,-300.0:24:99:194:3 0/0:0.0,-35.49,-300.0:27:99:200:7 0/0:0.0,-43.62,-300.0:23:99:189:6 0/0:0.0,-25.28,-300.0:26:99:141:6 0/0:0.0,-27.67,-300.0:28:99:156:10 0/0:0.0,-22.88,-300.0:22:99:129:4 0/0:0.0,-29.28,-300.0:21:99:109:6 0/0:0.0,-31.76,-300.0:24:99:177:8 0/0:0.0,-132.2,-300.0:21:99:511:5 0/0:0.0,-107.11,-300.0:24:99:431:7 0/0:0.0,-158.16,-300.0:24:99:650:11 0/0:0.0,-258.68,-300.0:25:99:982:17 chrXII 179912 . C CT 1112 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=8;HapScore=1;MGOF=32;MMLQ=12;MQ=59.91;NF=224;NR=233;PP=1112;QD=2.4704595186;SC=TTTTTTTTTGCTTTTTTTTAG;SbPval=0.23;Source=Platypus;TC=20658;TCF=10252;TCR=10406;TR=457;WE=179929;WS=179874 GT:GL:GOF:GQ:NR:NV 0/1:-105.08,0.0,-300.0:32:99:362:4 0/0:0.0,-35.1,-300.0:3:99:189:6 0/0:0.0,-17.14,-239.3:2:99:138:6 0/0:0.0,-21.64,-199.51:3:99:96:6 0/1:-88.91,0.0,-300.0:29:99:344:8 0/0:0.0,-11.77,-175.3:3:99:92:6 0/0:0.0,-21.51,-226.03:3:99:129:9 0/0:0.0,-25.34,-262.92:2:99:144:6 0/0:0.0,-42.99,-300.0:20:99:189:6 0/0:0.0,-120.41,-300.0:22:99:466:7 0/0:0.0,-161.55,-300.0:25:99:657:16 0/0:0.0,-106.08,-300.0:24:99:468:7 0/0:0.0,-123.38,-300.0:25:99:527:10 0/0:0.0,-130.65,-300.0:25:99:579:5 0/0:0.0,-136.93,-300.0:24:99:595:19 0/0:0.0,-172.34,-300.0:24:99:711:10 0/0:0.0,-143.44,-300.0:24:99:595:16 0/0:0.0,-125.52,-300.0:23:99:536:9 0/0:0.0,-152.59,-300.0:21:99:669:13 0/0:0.0,-300.0,-300.0:27:99:1923:44 0/0:0.0,-118.69,-300.0:24:99:491:5 0/0:0.0,-261.05,-300.0:23:99:1082:24 0/0:0.0,-148.31,-300.0:24:99:637:9 0/0:0.0,-209.54,-300.0:26:99:930:22 0/0:0.0,-100.33,-300.0:24:99:455:7 0/0:0.0,-145.24,-300.0:22:99:558:13 0/0:0.0,-148.37,-300.0:24:99:621:14 0/0:0.0,-175.38,-300.0:23:99:807:16 0/0:0.0,-23.53,-293.89:28:99:147:3 0/0:0.0,-39.98,-300.0:24:99:173:7 0/0:0.0,-33.25,-300.0:23:99:153:5 0/0:0.0,-35.32,-300.0:24:99:211:6 0/0:0.0,-43.47,-300.0:21:99:189:7 0/0:0.0,-39.86,-300.0:19:99:192:7 0/0:0.0,-10.01,-234.95:19:99:130:3 0/0:0.0,-33.67,-300.0:21:99:175:7 0/0:0.0,-29.26,-300.0:22:99:186:7 0/0:0.0,-31.38,-300.0:24:99:209:3 0/0:0.0,-35.49,-300.0:27:99:221:6 0/0:0.0,-43.62,-300.0:23:99:209:6 0/0:0.0,-25.28,-295.04:26:99:161:6 0/0:0.0,-27.67,-300.0:28:99:167:9 0/0:0.0,-22.88,-258.48:22:99:147:4 0/0:0.0,-29.28,-243.69:21:99:113:6 0/0:0.0,-31.76,-300.0:24:99:186:7 0/0:0.0,-132.2,-300.0:21:99:532:4 0/0:0.0,-107.11,-300.0:24:99:455:6 0/0:0.0,-158.16,-300.0:23:99:675:9 0/0:0.0,-258.68,-300.0:25:99:1037:16 chrXII 187137 . AT A 2951 PASS BRF=0.02;FR=1.0000;HP=3;HapScore=1;MGOF=15;MMLQ=34;MQ=59.99;NF=8184;NR=9842;PP=2951;QD=20;SC=CATGTACTTAATTTGATTGTC;SbPval=0.5;Source=Platypus;TC=19270;TCF=8732;TCR=10538;TR=18026;WE=187150;WS=187123 GT:GL:GOF:GQ:NR:NV 1/1:-300.0,-183.59,0.0:9:99:415:388 1/1:-300.0,-107.34,0.0:1:99:167:156 1/1:-300.0,-103.13,0.0:0:99:151:139 1/1:-300.0,-88.67,0.0:1:99:99:92 1/1:-300.0,-167.55,0.0:5:99:374:343 1/1:-300.0,-89.84,0.0:0:99:99:95 1/1:-300.0,-101.01,0.0:2:99:142:133 1/1:-300.0,-89.57,0.0:2:99:100:93 1/1:-300.0,-114.86,0.0:3:99:189:175 1/1:-300.0,-206.68,0.0:9:99:507:470 1/1:-300.0,-253.01,0.0:10:99:660:619 1/1:-300.0,-180.78,0.0:9:99:395:375 1/1:-300.0,-228.83,0.0:10:99:586:552 1/1:-300.0,-212.58,0.0:12:99:520:492 1/1:-300.0,-205.03,0.0:9:99:504:466 1/1:-300.0,-244.26,0.0:10:99:621:574 1/1:-300.0,-219.0,0.0:11:99:545:514 1/1:-300.0,-203.44,0.0:10:99:497:464 1/1:-300.0,-251.14,0.0:10:99:644:615 1/1:-300.0,-300.0,0.0:11:99:1743:1637 1/1:-300.0,-193.06,0.0:11:99:459:426 1/1:-300.0,-300.0,0.0:10:99:964:916 1/1:-300.0,-230.41,0.0:11:99:579:545 1/1:-300.0,-298.05,0.0:11:99:822:765 1/1:-300.0,-172.01,0.0:10:99:385:357 1/1:-300.0,-208.16,0.0:9:99:502:471 1/1:-300.0,-248.06,0.0:13:99:660:611 1/1:-300.0,-285.1,0.0:12:99:771:716 1/1:-300.0,-114.24,0.0:5:99:183:171 1/1:-300.0,-117.88,0.0:4:99:196:186 1/1:-300.0,-105.83,0.0:1:99:165:149 1/1:-300.0,-111.86,0.0:1:99:184:166 1/1:-300.0,-111.25,0.0:0:99:171:164 1/1:-300.0,-112.45,0.0:1:99:176:165 1/1:-300.0,-89.88,0.0:1:99:105:95 1/1:-300.0,-103.63,0.0:5:99:147:136 1/1:-300.0,-114.26,0.0:1:99:182:166 1/1:-300.0,-114.56,0.0:1:99:184:177 1/1:-300.0,-109.45,0.0:3:99:175:158 1/1:-300.0,-127.2,0.0:3:99:232:220 1/1:-300.0,-98.91,0.0:2:99:133:123 1/1:-300.0,-99.81,0.0:2:99:137:125 1/1:-300.0,-102.12,0.0:3:99:146:137 1/1:-300.0,-121.18,0.0:2:99:212:199 1/1:-300.0,-119.97,0.0:2:99:205:189 1/1:-300.0,-205.2,0.0:11:99:508:471 1/1:-300.0,-176.88,0.0:8:99:397:377 1/1:-300.0,-223.69,0.0:15:99:551:521 1/1:-300.0,-287.56,0.0:12:99:781:732 chrXII 196591 . A AT 70 badReads;QD;alleleBias BRF=0.03;FR=0.0102;HP=15;HapScore=1;MGOF=31;MMLQ=12;MQ=59.89;NF=138;NR=207;PP=70;QD=0.211594202899;SC=CGGCGGTAGGATTTTTTTTTT;SbPval=0.23;Source=Platypus;TC=20107;TCF=8661;TCR=11446;TR=345;WE=196615;WS=196573 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-6.27,-283.67:28:63:365:4 0/0:0.0,-38.99,-144.41:1:99:159:5 0/0:0.0,-28.11,-116.0:1:99:118:7 0/0:0.0,-24.71,-96.34:2:99:75:6 0/1:-7.41,0.0,-250.39:19:74:361:2 0/0:0.0,-24.47,-105.65:3:99:86:4 0/0:0.0,-32.05,-123.41:1:99:125:4 0/0:0.0,-23.41,-103.77:2:99:94:1 0/0:0.0,-36.19,-167.71:17:99:147:3 0/0:0.0,-112.38,-300.0:26:99:467:9 0/0:0.0,-125.83,-300.0:27:99:617:11 0/0:0.0,-115.13,-300.0:24:99:487:4 0/0:0.0,-121.54,-300.0:25:99:552:14 0/0:0.0,-123.71,-300.0:28:99:579:6 0/0:0.0,-119.28,-300.0:23:99:540:7 0/0:0.0,-148.17,-300.0:23:99:703:10 0/0:0.0,-131.93,-300.0:24:99:606:10 0/0:0.0,-103.64,-300.0:27:99:528:5 0/0:0.0,-142.81,-300.0:22:99:646:8 0/0:0.0,-300.0,-300.0:26:99:1884:25 0/0:0.0,-121.52,-300.0:24:99:545:13 0/0:0.0,-247.38,-300.0:25:99:1106:14 0/0:0.0,-135.61,-300.0:22:99:610:6 0/0:0.0,-178.29,-300.0:25:99:853:20 0/0:0.0,-95.4,-300.0:28:99:434:6 0/0:0.0,-120.3,-300.0:20:99:531:3 0/0:0.0,-147.99,-300.0:28:99:634:9 0/0:0.0,-157.81,-300.0:24:99:795:12 0/0:0.0,-41.86,-195.61:27:99:167:6 0/0:0.0,-40.92,-227.6:22:99:185:6 0/0:0.0,-33.2,-157.57:21:99:122:2 0/0:0.0,-37.17,-196.89:19:99:174:4 0/0:0.0,-40.59,-161.41:15:99:157:4 0/0:0.0,-39.11,-170.31:22:99:157:9 0/0:0.0,-17.74,-95.46:15:99:82:1 0/0:0.0,-37.68,-182.4:23:99:149:2 0/0:0.0,-37.03,-181.96:20:99:172:5 0/0:0.0,-37.88,-173.9:16:99:171:7 0/0:0.0,-34.33,-171.89:21:99:164:10 0/0:0.0,-48.33,-201.21:17:99:195:3 0/0:0.0,-26.39,-133.45:19:99:124:1 0/0:0.0,-21.1,-112.1:17:99:108:2 0/0:0.0,-20.65,-127.6:16:99:115:2 0/0:0.0,-52.06,-230.11:16:99:194:2 0/0:0.0,-40.45,-201.11:19:99:169:7 0/0:0.0,-139.34,-300.0:25:99:628:11 0/0:0.0,-115.98,-300.0:24:99:490:5 0/0:0.0,-138.76,-300.0:31:99:679:9 0/0:0.0,-212.4,-300.0:28:99:1058:19 chrXII 196606 . TC T 70 badReads;QD;alleleBias BRF=0.03;FR=0.0102;HP=14;HapScore=1;MGOF=31;MMLQ=12;MQ=59.91;NF=139;NR=219;PP=70;QD=0.203910614525;SC=TTTTTTTTTTTCAATTTCTAT;SbPval=0.16;Source=Platypus;TC=18482;TCF=7592;TCR=10890;TR=358;WE=196615;WS=196573 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-6.27,-300.0:28:63:322:4 0/0:0.0,-38.99,-300.0:1:99:144:6 0/0:0.0,-28.11,-293.57:1:99:96:7 0/0:0.0,-24.71,-257.27:1:99:80:9 0/1:-7.41,0.0,-300.0:19:74:305:2 0/0:0.0,-24.47,-249.37:2:99:78:6 0/0:0.0,-32.05,-300.0:1:99:108:7 0/0:0.0,-23.41,-256.47:2:99:88:2 0/0:0.0,-36.19,-300.0:17:99:137:3 0/0:0.0,-112.38,-300.0:26:99:454:10 0/0:0.0,-125.83,-300.0:27:99:568:12 0/0:0.0,-115.13,-300.0:24:99:458:4 0/0:0.0,-121.64,-300.0:25:99:503:13 0/0:0.0,-123.71,-300.0:28:99:512:6 0/0:0.0,-121.56,-300.0:23:99:497:7 0/0:0.0,-148.17,-300.0:23:99:621:9 0/0:0.0,-131.93,-300.0:24:99:553:11 0/0:0.0,-103.64,-300.0:27:99:476:5 0/0:0.0,-142.82,-300.0:22:99:592:7 0/0:0.0,-300.0,-300.0:26:99:1732:24 0/0:0.0,-121.52,-300.0:24:99:502:13 0/0:0.0,-252.21,-300.0:25:99:1015:14 0/0:0.0,-135.61,-300.0:22:99:549:7 0/0:0.0,-178.29,-300.0:25:99:803:20 0/0:0.0,-95.4,-300.0:28:99:389:7 0/0:0.0,-120.3,-300.0:20:99:502:3 0/0:0.0,-147.99,-300.0:28:99:592:9 0/0:0.0,-157.81,-300.0:24:99:737:13 0/0:0.0,-41.86,-300.0:27:99:156:6 0/0:0.0,-40.92,-300.0:22:99:175:6 0/0:0.0,-33.2,-300.0:21:99:117:2 0/0:0.0,-37.17,-300.0:19:99:165:4 0/0:0.0,-40.59,-300.0:15:99:145:4 0/0:0.0,-39.11,-300.0:22:99:135:9 0/0:0.0,-17.74,-217.87:15:99:78:2 0/0:0.0,-37.68,-300.0:23:99:148:2 0/0:0.0,-37.03,-300.0:20:99:161:5 0/0:0.0,-37.88,-300.0:16:99:161:7 0/0:0.0,-34.33,-300.0:21:99:150:10 0/0:0.0,-48.33,-300.0:17:99:182:3 0/0:0.0,-26.39,-300.0:19:99:110:1 0/0:0.0,-21.1,-251.07:17:99:93:2 0/0:0.0,-20.65,-275.47:16:99:105:2 0/0:0.0,-52.06,-300.0:16:99:190:2 0/0:0.0,-40.45,-300.0:19:99:163:7 0/0:0.0,-139.34,-300.0:25:99:586:11 0/0:0.0,-116.06,-300.0:24:99:453:5 0/0:0.0,-138.76,-300.0:31:99:634:9 0/0:0.0,-241.62,-300.0:28:99:962:19 chrXII 214546 . TGTATGGGCGCC T 108 badReads;QD;alleleBias;strandBias BRF=0.02;FR=0.0102;HP=1;HapScore=1;MGOF=15;MMLQ=12;MQ=59.97;NF=10;NR=32;PP=108;QD=4.03630413168;SC=TACTTTTTCTTGTATGGGCGC;SbPval=0.0;Source=Platypus;TC=22083;TCF=11376;TCR=10707;TR=42;WE=214576;WS=214536 GT:GL:GOF:GQ:NR:NV 1/0:-17.42,0.0,-300.0:15:99:421:10 0/0:0.0,-79.35,-300.0:1:99:250:1 0/0:0.0,-50.75,-300.0:1:99:166:1 0/0:0.0,-32.99,-300.0:1:99:106:0 0/0:0.0,-61.21,-300.0:12:99:402:5 0/0:0.0,-40.52,-300.0:0:99:129:0 0/0:0.0,-57.68,-300.0:0:99:184:0 0/0:0.0,-37.81,-300.0:1:99:118:1 0/0:0.0,-68.19,-300.0:2:99:220:2 0/0:0.0,-155.39,-300.0:13:99:504:1 0/0:0.0,-191.01,-300.0:11:99:631:0 0/0:0.0,-151.49,-300.0:13:99:482:1 0/0:0.0,-177.12,-300.0:12:99:583:0 0/0:0.0,-183.98,-300.0:13:99:619:2 0/0:0.0,-163.81,-300.0:13:99:535:2 0/0:0.0,-229.14,-300.0:12:99:753:1 0/0:0.0,-186.74,-300.0:13:99:625:0 0/0:0.0,-162.53,-300.0:12:99:527:1 0/0:0.0,-223.43,-300.0:14:99:738:2 0/0:0.0,-300.0,-300.0:13:99:2048:0 0/0:0.0,-164.52,-300.0:14:99:527:0 0/0:0.0,-300.0,-300.0:10:99:1106:0 0/0:0.0,-200.19,-300.0:14:99:678:1 0/0:0.0,-280.36,-300.0:13:99:927:2 0/0:0.0,-139.56,-300.0:14:99:456:0 0/0:0.0,-156.66,-300.0:11:99:511:0 0/0:0.0,-187.31,-300.0:14:99:618:0 0/0:0.0,-252.01,-300.0:12:99:830:0 0/0:0.0,-52.26,-300.0:3:99:168:0 0/0:0.0,-64.3,-300.0:3:99:213:1 0/0:0.0,-58.58,-300.0:2:99:191:0 0/0:0.0,-72.41,-300.0:2:99:234:2 0/0:0.0,-70.62,-300.0:2:99:229:1 0/0:0.0,-65.16,-300.0:2:99:211:1 0/0:0.0,-48.04,-300.0:1:99:150:0 0/0:0.0,-75.12,-300.0:2:99:242:0 0/0:0.0,-72.73,-300.0:2:99:237:0 0/0:0.0,-73.91,-300.0:2:99:246:0 0/0:0.0,-76.64,-300.0:2:99:252:0 0/0:0.0,-91.99,-300.0:2:99:297:0 0/0:0.0,-51.66,-300.0:1:99:168:0 0/0:0.0,-56.17,-300.0:3:99:180:0 0/0:0.0,-52.86,-300.0:2:99:174:1 0/0:0.0,-72.13,-300.0:4:99:238:0 0/0:0.0,-68.51,-300.0:3:99:218:1 0/0:0.0,-186.44,-300.0:14:99:618:0 0/0:0.0,-125.08,-300.0:12:99:401:0 0/0:0.0,-211.15,-300.0:14:99:710:0 0/0:0.0,-300.0,-300.0:15:99:1012:2 chrXII 214557 . C CAAAAAAAAAAA 145 badReads;QD;alleleBias;strandBias BRF=0.02;FR=0.0102;HP=6;HapScore=1;MGOF=15;MMLQ=12;MQ=59.97;NF=10;NR=33;PP=145;QD=3.95348837209;SC=GTATGGGCGCCAAAAAAGGGC;SbPval=0.0;Source=Platypus;TC=21228;TCF=10936;TCR=10292;TR=43;WE=214576;WS=214536 GT:GL:GOF:GQ:NR:NV 1/0:-17.42,0.0,-300.0:15:99:410:10 0/0:0.0,-79.35,-300.0:1:99:241:1 0/0:0.0,-50.75,-300.0:1:99:158:1 0/0:0.0,-32.99,-300.0:1:99:95:0 0/0:0.0,-61.21,-300.0:12:99:385:5 0/0:0.0,-40.52,-300.0:0:99:121:0 0/0:0.0,-57.68,-300.0:0:99:167:0 0/0:0.0,-37.81,-300.0:1:99:116:1 0/0:0.0,-68.19,-300.0:2:99:218:2 0/0:0.0,-155.39,-300.0:13:99:488:1 0/0:0.0,-191.01,-300.0:11:99:617:0 0/0:0.0,-151.49,-300.0:13:99:469:1 0/0:0.0,-177.12,-300.0:12:99:573:0 0/0:0.0,-183.98,-300.0:13:99:583:2 0/0:0.0,-163.81,-300.0:13:99:514:2 0/0:0.0,-229.14,-300.0:12:99:718:1 0/0:0.0,-186.74,-300.0:13:99:597:0 0/0:0.0,-162.53,-300.0:12:99:510:0 0/0:0.0,-223.43,-300.0:14:99:714:2 0/0:0.0,-300.0,-300.0:13:99:1970:0 0/0:0.0,-164.52,-300.0:14:99:511:0 0/0:0.0,-300.0,-300.0:10:99:1058:0 0/0:0.0,-200.19,-300.0:14:99:660:1 0/0:0.0,-280.36,-300.0:13:99:884:3 0/0:0.0,-139.56,-300.0:14:99:452:0 0/0:0.0,-156.66,-300.0:11:99:484:0 0/0:0.0,-187.31,-300.0:14:99:582:1 0/0:0.0,-252.01,-300.0:12:99:782:1 0/0:0.0,-52.26,-300.0:3:99:166:0 0/0:0.0,-64.3,-300.0:3:99:210:1 0/0:0.0,-58.58,-300.0:2:99:188:0 0/0:0.0,-72.41,-300.0:2:99:225:2 0/0:0.0,-70.62,-300.0:2:99:217:1 0/0:0.0,-65.16,-300.0:2:99:205:0 0/0:0.0,-48.04,-300.0:1:99:148:0 0/0:0.0,-75.12,-300.0:2:99:241:0 0/0:0.0,-72.73,-300.0:2:99:231:0 0/0:0.0,-73.91,-300.0:2:99:239:0 0/0:0.0,-76.64,-300.0:2:99:236:0 0/0:0.0,-91.99,-300.0:2:99:278:0 0/0:0.0,-51.66,-300.0:1:99:161:0 0/0:0.0,-56.17,-300.0:3:99:166:0 0/0:0.0,-52.86,-300.0:2:99:166:1 0/0:0.0,-72.13,-300.0:4:99:233:0 0/0:0.0,-68.51,-300.0:3:99:204:1 0/0:0.0,-186.44,-300.0:14:99:579:0 0/0:0.0,-125.08,-300.0:12:99:402:0 0/0:0.0,-211.15,-300.0:14:99:680:0 0/0:0.0,-300.0,-300.0:15:99:976:2 chrXII 217018 . A T 20 badReads;MQ BRF=0.99;FR=0.1357;HP=1;HapScore=2;MGOF=140;MMLQ=12;MQ=8.12;NF=0;NR=3;PP=20;QD=18.2570708491;SC=ATCGTAAGGTAGTTCGTATTG;SbPval=1.0;Source=Platypus;TC=27;TCF=22;TCR=5;TR=3;WE=217026;WS=217008 GT:GL:GOF:GQ:NR:NV ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:-0.42,0.0,-0.83:30:5:1:1 ./.:0.0,-0.5,-1.61:0:6:0:0 ./.:-2.9,0.0,-0.8:14:9:1:1 0/0:0.0,-1.05,-4.01:108:11:2:0 ./.:0.0,-0.78,-2.81:80:8:1:0 0/0:0.0,-1.05,-4.01:54:11:2:0 ./.:0.0,-0.78,-2.81:140:8:1:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.8,-3.81:56:9:1:0 ./.:0.0,-0.78,-2.81:116:8:1:0 ./.:0.0,-0.78,-2.81:112:8:1:0 ./.:0.0,-0.78,-2.81:60:8:1:0 ./.:0.0,-0.5,-1.61:46:6:1:0 0/0:0.0,-1.05,-4.01:56:11:2:0 ./.:0.0,-0.78,-2.81:56:8:1:0 0/0:0.0,-1.05,-4.01:29:11:2:0 ./.:0.0,-0.78,-2.81:96:8:1:0 0/0:0.0,-1.05,-4.01:24:11:2:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.8,-3.21:123:9:1:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:-3.3,0.0,-0.8:24:9:1:1 ./.:0.0,-0.5,-1.61:0:6:0:0 ./.:0,0,0:0:0:0:0 0/0:0.0,-1.33,-5.21:79:13:4:0 chrXII 220717 . G A 2965 MQ BRF=0.34;FR=1.0000;HP=2;HapScore=1;MGOF=18;MMLQ=37;MQ=36.57;NF=5216;NR=0;PP=2965;QD=20;SC=ATTGTTGATAGAGGCTATAAT;SbPval=1.0;Source=Platypus;TC=5769;TCF=5711;TCR=58;TR=5216;WE=220725;WS=220707 GT:GL:GOF:GQ:NR:NV 1/1:-300.0,-33.17,0.0:5:99:101:93 1/1:-236.66,-24.95,0.0:0:99:66:63 1/1:-85.36,-11.85,0.0:0:99:20:19 1/1:-85.76,-11.85,0.0:0:99:19:19 1/1:-251.96,-21.72,0.0:8:99:70:61 1/1:-59.76,-7.64,0.0:3:76:18:13 1/1:-116.36,-14.56,0.0:1:99:32:29 1/1:-79.56,-11.85,0.0:2:99:21:20 1/1:-157.76,-17.87,0.0:1:99:40:39 1/1:-300.0,-38.21,0.0:13:99:129:117 1/1:-300.0,-48.26,0.0:12:99:175:162 1/1:-300.0,-33.93,0.0:12:99:116:108 1/1:-300.0,-35.78,0.0:13:99:141:126 1/1:-300.0,-66.12,0.0:16:99:228:213 1/1:-300.0,-32.37,0.0:16:99:106:97 1/1:-300.0,-53.99,0.0:12:99:197:182 1/1:-300.0,-46.75,0.0:14:99:173:158 1/1:-300.0,-51.51,0.0:13:99:189:167 1/1:-300.0,-49.46,0.0:14:99:180:159 1/1:-300.0,-172.14,0.0:14:99:673:608 1/1:-300.0,-37.49,0.0:14:99:134:117 1/1:-300.0,-80.59,0.0:13:99:319:283 1/1:-300.0,-44.32,0.0:11:99:176:156 1/1:-300.0,-59.92,0.0:13:99:248:214 1/1:-300.0,-38.5,0.0:16:99:137:126 1/1:-300.0,-35.46,0.0:8:99:121:107 1/1:-300.0,-45.99,0.0:13:99:191:167 1/1:-300.0,-57.52,0.0:13:99:225:198 1/1:-97.66,-13.05,0.0:2:99:25:23 1/1:-76.46,-11.25,0.0:1:99:17:17 1/1:-122.86,-14.86,0.0:0:99:32:29 1/1:-130.56,-15.46,0.0:0:99:34:31 1/1:-136.56,-16.36,0.0:0:99:36:34 1/1:-148.46,-16.97,0.0:2:99:41:36 1/1:-105.66,-13.65,0.0:1:99:27:25 1/1:-92.36,-9.95,0.0:6:99:26:22 1/1:-167.86,-18.77,0.0:3:99:43:42 1/1:-225.46,-23.29,0.0:5:99:61:57 1/1:-241.66,-24.79,0.0:1:99:64:62 1/1:-300.0,-30.81,0.0:1:99:85:82 1/1:-158.06,-17.87,0.0:1:99:41:39 1/1:-152.76,-17.27,0.0:0:99:39:37 1/1:-139.96,-16.36,0.0:1:99:35:34 1/1:-131.26,-15.76,0.0:3:99:34:32 1/1:-96.46,-12.75,0.0:2:99:24:22 1/1:-300.0,-51.21,0.0:10:99:184:171 1/1:-300.0,-43.23,0.0:11:99:156:136 1/1:-300.0,-61.72,0.0:18:99:222:204 1/1:-300.0,-71.34,0.0:17:99:298:260 chrXII 228542 . C CTTTTTTT 221 QD;alleleBias BRF=0.02;FR=0.0102;HP=9;HapScore=1;MGOF=25;MMLQ=27;MQ=59.97;NF=53;NR=43;PP=221;QD=2.44791666667;SC=CTTACCTTACCTTTTTTTTTG;SbPval=0.07;Source=Platypus;TC=19513;TCF=9828;TCR=9685;TR=96;WE=228578;WS=228532 GT:GL:GOF:GQ:NR:NV 0/1:-23.92,0.0,-300.0:20:99:403:4 0/0:0.0,-55.47,-300.0:1:99:175:2 0/0:0.0,-43.83,-300.0:2:99:157:2 0/0:0.0,-31.19,-300.0:1:99:96:0 0/0:0.0,-50.9,-300.0:25:99:373:4 0/0:0.0,-31.79,-300.0:1:99:98:2 0/0:0.0,-45.64,-300.0:2:99:140:2 0/0:0.0,-30.58,-300.0:2:99:106:0 0/0:0.0,-58.52,-300.0:4:99:188:3 0/0:0.0,-134.77,-300.0:16:99:440:1 0/0:0.0,-172.97,-300.0:18:99:580:4 0/0:0.0,-147.7,-300.0:15:99:499:2 0/0:0.0,-156.34,-300.0:14:99:506:1 0/0:0.0,-163.43,-300.0:20:99:526:1 0/0:0.0,-145.13,-300.0:14:99:478:1 0/0:0.0,-181.29,-300.0:15:99:616:1 0/0:0.0,-167.24,-300.0:14:99:549:1 0/0:0.0,-154.65,-300.0:15:99:495:2 0/0:0.0,-192.38,-300.0:14:99:609:3 0/0:0.0,-300.0,-300.0:17:99:1818:7 0/0:0.0,-146.4,-300.0:13:99:468:1 0/0:0.0,-296.23,-300.0:16:99:1023:7 0/0:0.0,-167.03,-300.0:14:99:559:2 0/0:0.0,-222.26,-300.0:14:99:742:0 0/0:0.0,-141.89,-300.0:14:99:470:1 0/0:0.0,-136.47,-300.0:13:99:455:3 0/0:0.0,-189.29,-300.0:18:99:635:6 0/0:0.0,-243.95,-300.0:14:99:822:1 0/0:0.0,-51.5,-300.0:4:99:172:0 0/0:0.0,-69.86,-300.0:8:99:225:3 0/0:0.0,-56.19,-300.0:3:99:188:2 0/0:0.0,-67.91,-300.0:3:99:211:0 0/0:0.0,-54.34,-300.0:4:99:174:1 0/0:0.0,-64.56,-300.0:7:99:194:3 0/0:0.0,-38.35,-300.0:5:99:127:1 0/0:0.0,-51.89,-300.0:3:99:169:0 0/0:0.0,-59.16,-300.0:5:99:191:4 0/0:0.0,-59.44,-300.0:4:99:198:1 0/0:0.0,-51.59,-300.0:4:99:184:2 0/0:0.0,-69.72,-300.0:5:99:231:1 0/0:0.0,-40.8,-300.0:3:99:137:0 0/0:0.0,-48.9,-300.0:4:99:166:0 0/0:0.0,-42.91,-300.0:4:99:136:0 0/0:0.0,-58.52,-300.0:4:99:181:0 0/0:0.0,-70.58,-300.0:5:99:221:2 0/0:0.0,-172.65,-300.0:16:99:579:1 0/0:0.0,-103.63,-300.0:18:99:359:4 0/0:0.0,-171.02,-300.0:16:99:567:3 0/0:0.0,-259.78,-300.0:17:99:877:4 chrXII 228553 . TAGAGGCA T 200 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=1;HapScore=1;MGOF=25;MMLQ=12;MQ=59.98;NF=52;NR=44;PP=200;QD=2.44791666667;SC=TTTTTTTTTGTAGAGGCATTT;SbPval=0.06;Source=Platypus;TC=19157;TCF=9414;TCR=9743;TR=96;WE=228578;WS=228532 GT:GL:GOF:GQ:NR:NV 0/1:-23.92,0.0,-300.0:20:99:404:4 0/0:0.0,-55.47,-300.0:1:99:176:2 0/0:0.0,-43.83,-300.0:1:99:140:2 0/0:0.0,-31.19,-300.0:1:99:95:0 0/0:0.0,-50.9,-300.0:25:99:366:4 0/0:0.0,-31.79,-300.0:1:99:100:2 0/0:0.0,-45.64,-300.0:1:99:143:2 0/0:0.0,-30.58,-300.0:2:99:95:0 0/0:0.0,-58.52,-300.0:4:99:186:4 0/0:0.0,-134.77,-300.0:16:99:438:1 0/0:0.0,-172.97,-300.0:18:99:567:3 0/0:0.0,-147.7,-300.0:15:99:476:2 0/0:0.0,-156.34,-300.0:14:99:508:1 0/0:0.0,-163.43,-300.0:20:99:530:1 0/0:0.0,-145.13,-300.0:13:99:463:1 0/0:0.0,-181.29,-300.0:15:99:597:1 0/0:0.0,-167.24,-300.0:14:99:550:1 0/0:0.0,-154.65,-300.0:15:99:505:2 0/0:0.0,-192.38,-300.0:14:99:613:3 0/0:0.0,-300.0,-300.0:16:99:1763:7 0/0:0.0,-146.4,-300.0:13:99:464:1 0/0:0.0,-300.0,-300.0:16:99:1000:7 0/0:0.0,-167.03,-300.0:14:99:546:2 0/0:0.0,-222.26,-300.0:14:99:731:0 0/0:0.0,-141.89,-300.0:14:99:464:1 0/0:0.0,-136.47,-300.0:13:99:451:3 0/0:0.0,-189.29,-300.0:18:99:603:5 0/0:0.0,-243.95,-300.0:14:99:807:1 0/0:0.0,-51.5,-300.0:4:99:168:0 0/0:0.0,-69.86,-300.0:8:99:223:3 0/0:0.0,-56.19,-300.0:3:99:179:2 0/0:0.0,-67.91,-300.0:3:99:219:0 0/0:0.0,-54.34,-300.0:4:99:176:1 0/0:0.0,-64.56,-300.0:7:99:207:3 0/0:0.0,-38.35,-300.0:5:99:120:1 0/0:0.0,-51.89,-300.0:3:99:164:0 0/0:0.0,-59.16,-300.0:5:99:187:4 0/0:0.0,-59.44,-300.0:4:99:188:1 0/0:0.0,-51.59,-300.0:4:99:158:2 0/0:0.0,-69.72,-300.0:5:99:226:2 0/0:0.0,-40.8,-300.0:3:99:125:0 0/0:0.0,-48.9,-300.0:4:99:154:0 0/0:0.0,-42.91,-300.0:4:99:137:0 0/0:0.0,-58.52,-300.0:4:99:183:0 0/0:0.0,-70.58,-300.0:5:99:222:2 0/0:0.0,-172.65,-300.0:16:99:566:1 0/0:0.0,-103.63,-300.0:18:99:366:4 0/0:0.0,-171.02,-300.0:16:99:555:3 0/0:0.0,-259.78,-300.0:17:99:853:4 chrXII 245256 . AAT A 75 QD;alleleBias BRF=0.02;FR=0.0203;HP=1;HapScore=1;MGOF=19;MMLQ=33;MQ=59.97;NF=112;NR=106;PP=75;QD=0.371559633028;SC=CGTGCAGCACAATATATATAT;SbPval=0.75;Source=Platypus;TC=20067;TCF=9805;TCR=10262;TR=218;WE=245267;WS=245227 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-100.4,-300.0:8:99:410:1 0/0:0.0,-24.38,-300.0:2:99:200:9 0/0:0.0,-15.55,-300.0:2:99:132:4 0/0:0.0,-6.25,-281.67:2:62:97:3 0/0:0.0,-97.31,-300.0:7:99:377:1 0/1:-6.69,0.0,-276.95:1:67:85:6 0/1:-2.2,0.0,-300.0:2:22:114:7 0/0:0.0,-5.05,-300.0:3:50:112:9 0/0:0.0,-43.87,-300.0:6:99:220:4 0/0:0.0,-118.69,-300.0:14:99:494:4 0/0:0.0,-147.45,-300.0:14:99:594:6 0/0:0.0,-123.1,-300.0:13:99:477:1 0/0:0.0,-134.52,-300.0:14:99:535:5 0/0:0.0,-133.15,-300.0:19:99:540:3 0/0:0.0,-122.8,-300.0:14:99:523:3 0/0:0.0,-164.95,-300.0:14:99:672:3 0/0:0.0,-128.77,-300.0:15:99:568:5 0/0:0.0,-120.03,-300.0:18:99:535:5 0/0:0.0,-141.94,-300.0:12:99:612:4 0/0:0.0,-300.0,-300.0:15:99:1864:17 0/0:0.0,-121.04,-300.0:15:99:517:6 0/0:0.0,-220.71,-300.0:16:99:1000:9 0/0:0.0,-112.18,-300.0:18:99:521:5 0/0:0.0,-196.78,-300.0:15:99:829:4 0/0:0.0,-117.43,-300.0:18:99:480:4 0/0:0.0,-112.09,-300.0:12:99:499:2 0/0:0.0,-152.81,-300.0:14:99:619:5 0/0:0.0,-207.14,-300.0:15:99:847:6 0/0:0.0,-44.13,-300.0:6:99:174:0 0/0:0.0,-44.13,-300.0:6:99:194:1 0/0:0.0,-36.18,-300.0:5:99:168:3 0/0:0.0,-29.02,-300.0:6:99:243:9 0/0:0.0,-37.72,-300.0:4:99:194:4 0/0:0.0,-35.45,-300.0:8:99:194:4 0/0:0.0,-23.03,-300.0:7:99:111:3 0/0:0.0,-47.14,-300.0:8:99:189:1 0/0:0.0,-46.0,-300.0:13:99:207:1 0/0:0.0,-38.66,-300.0:6:99:196:4 0/0:0.0,-48.64,-300.0:5:99:210:0 0/0:0.0,-48.8,-300.0:6:99:231:6 0/0:0.0,-29.41,-300.0:6:99:161:2 0/0:0.0,-32.99,-300.0:3:99:142:0 0/0:0.0,-19.5,-300.0:7:99:125:5 0/0:0.0,-38.42,-300.0:5:99:199:3 0/0:0.0,-28.25,-300.0:5:99:187:6 0/0:0.0,-131.04,-300.0:17:99:577:8 0/0:0.0,-98.87,-300.0:14:99:415:2 0/0:0.0,-150.77,-300.0:15:99:584:3 0/0:0.0,-210.26,-300.0:14:99:893:12 chrXII 251194 . G GA 17 Q20;badReads;QD;alleleBias BRF=0.03;FR=0.0192;HP=18;HapScore=1;MGOF=37;MMLQ=12;MQ=59.79;NF=181;NR=214;PP=17;QD=0.0506329113924;SC=CAGTGGCCCTGAAAAAAAAAA;SbPval=0.19;Source=Platypus;TC=17985;TCF=8649;TCR=9336;TR=395;WE=251203;WS=251150 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-33.81,-220.09:31:99:303:6 0/0:0.0,-14.9,-57.86:3:99:140:14 0/0:0.0,-19.58,-61.66:2:99:104:10 0/0:0.0,-16.19,-46.56:2:99:57:2 1/0:-0.99,0.0,-156.65:21:10:265:5 0/0:0.0,-22.92,-68.76:2:99:79:4 0/0:0.0,-14.47,-50.96:2:99:87:3 0/0:0.0,-17.04,-46.86:2:99:71:7 0/0:0.0,-22.65,-92.14:24:99:137:3 0/0:0.0,-69.54,-300.0:34:99:425:13 0/0:0.0,-82.16,-300.0:37:99:584:11 0/0:0.0,-70.34,-300.0:33:99:440:6 0/0:0.0,-77.37,-300.0:35:99:472:11 0/0:0.0,-93.27,-300.0:31:99:534:13 0/0:0.0,-49.1,-300.0:33:99:458:8 0/0:0.0,-135.53,-300.0:33:99:704:9 0/0:0.0,-85.28,-300.0:35:99:479:12 0/0:0.0,-90.55,-300.0:31:99:509:15 0/0:0.0,-102.6,-300.0:29:99:605:7 0/0:0.0,-292.37,-300.0:34:99:1835:30 0/0:0.0,-65.4,-300.0:31:99:461:9 0/0:0.0,-135.52,-300.0:30:99:899:13 0/0:0.0,-93.44,-300.0:35:99:513:9 0/0:0.0,-110.5,-300.0:34:99:844:15 0/0:0.0,-80.41,-300.0:34:99:436:7 0/0:0.0,-72.45,-300.0:30:99:467:9 0/0:0.0,-117.9,-300.0:31:99:605:13 0/0:0.0,-126.96,-300.0:34:99:789:13 0/0:0.0,-14.4,-82.89:29:99:111:5 0/0:0.0,-16.42,-104.08:32:99:129:4 1/0:-1.42,0.0,-53.97:27:14:104:2 0/0:0.0,-20.99,-98.24:24:99:142:5 0/0:0.0,-23.67,-95.4:33:99:130:2 0/0:0.0,-4.98,-74.35:32:50:126:4 0/0:0.0,-7.34,-51.69:34:73:83:4 0/0:0.0,-10.7,-70.54:28:99:118:3 0/0:0.0,-21.03,-96.59:23:99:115:4 0/0:0.0,-2.09,-83.97:35:21:142:5 0/0:0.0,-23.21,-100.88:22:99:144:5 0/0:0.0,-16.08,-104.42:24:99:178:4 0/0:0.0,-2.81,-62.69:29:28:115:2 0/0:0.0,-10.14,-63.76:23:99:94:1 0/0:0.0,-12.15,-57.13:20:99:89:4 0/0:0.0,-17.94,-95.71:29:99:137:8 0/0:0.0,-17.58,-99.12:25:99:150:6 0/0:0.0,-92.41,-300.0:32:99:552:12 0/0:0.0,-49.95,-300.0:36:99:402:6 0/0:0.0,-95.31,-300.0:37:99:660:14 0/0:0.0,-166.42,-300.0:33:99:962:18 chrXII 253092 . AG A 951 QD;alleleBias BRF=0.03;FR=0.0204;HP=1;HapScore=1;MGOF=33;MMLQ=27;MQ=59.93;NF=98;NR=110;PP=951;QD=4.71153846154;SC=ACGTAAAAGAAGAAAAAAAAA;SbPval=0.5;Source=Platypus;TC=16811;TCF=7993;TCR=8818;TR=208;WE=253113;WS=253074 GT:GL:GOF:GQ:NR:NV 1/0:-42.04,0.0,-300.0:30:99:347:3 0/0:0.0,-40.81,-300.0:2:99:169:6 0/0:0.0,-35.27,-248.21:1:99:130:4 0/0:0.0,-18.8,-146.56:2:99:78:4 1/0:-56.82,0.0,-300.0:26:99:314:6 0/0:0.0,-24.6,-170.56:3:99:86:4 0/0:0.0,-33.99,-263.8:2:99:143:11 0/0:0.0,-22.48,-184.86:2:99:90:2 0/0:0.0,-28.57,-272.66:14:99:156:2 0/0:0.0,-93.76,-300.0:24:99:395:5 0/0:0.0,-113.5,-300.0:22:99:485:4 0/0:0.0,-104.47,-300.0:24:99:399:1 0/0:0.0,-99.21,-300.0:23:99:416:1 0/0:0.0,-100.76,-300.0:27:99:439:4 0/0:0.0,-101.89,-300.0:24:99:421:4 0/0:0.0,-132.39,-300.0:24:99:532:7 0/0:0.0,-119.86,-300.0:23:99:448:2 0/0:0.0,-105.92,-300.0:25:99:443:6 0/0:0.0,-125.0,-300.0:28:99:519:6 0/0:0.0,-300.0,-300.0:26:99:1508:16 0/0:0.0,-104.8,-300.0:24:99:410:3 0/0:0.0,-169.09,-300.0:27:99:733:8 0/0:0.0,-100.08,-300.0:28:99:497:7 0/0:0.0,-173.73,-300.0:26:99:724:6 0/0:0.0,-90.91,-300.0:22:99:342:6 0/0:0.0,-87.98,-300.0:33:99:377:3 0/0:0.0,-124.18,-300.0:24:99:514:4 0/0:0.0,-145.2,-300.0:23:99:596:6 0/0:0.0,-25.41,-289.57:17:99:177:4 0/0:0.0,-20.48,-300.0:18:99:206:2 0/0:0.0,-29.42,-237.75:16:99:123:2 0/0:0.0,-32.53,-298.11:13:99:174:3 0/0:0.0,-26.29,-276.68:21:99:161:5 0/0:0.0,-22.11,-276.14:16:99:168:4 0/0:0.0,-15.33,-168.26:16:99:94:1 0/0:0.0,-36.53,-286.36:14:99:156:3 0/0:0.0,-28.7,-295.46:13:99:177:6 0/0:0.0,-24.62,-284.97:17:99:173:2 0/0:0.0,-28.55,-262.52:15:99:148:0 0/0:0.0,-24.38,-296.15:18:99:185:3 0/0:0.0,-19.35,-207.81:21:99:115:2 0/0:0.0,-33.27,-237.84:14:99:123:3 0/0:0.0,-26.19,-234.84:16:99:126:1 0/0:0.0,-16.04,-300.0:19:99:214:2 0/0:0.0,-3.05,-259.79:19:31:184:3 0/0:0.0,-109.87,-300.0:23:99:490:5 0/0:0.0,-108.63,-300.0:26:99:420:2 0/0:0.0,-145.83,-300.0:27:99:569:7 0/0:0.0,-219.62,-300.0:26:99:917:7 chrXII 253093 . G GA 976 QD;alleleBias BRF=0.03;FR=0.0204;HP=15;HapScore=1;MGOF=33;MMLQ=22;MQ=59.93;NF=94;NR=111;PP=976;QD=4.78536585366;SC=CGTAAAAGAAGAAAAAAAAAA;SbPval=0.5;Source=Platypus;TC=18170;TCF=8548;TCR=9622;TR=205;WE=253113;WS=253074 GT:GL:GOF:GQ:NR:NV 1/0:-42.04,0.0,-300.0:30:99:364:3 0/0:0.0,-40.81,-218.37:2:99:180:6 0/0:0.0,-35.27,-175.71:1:99:140:4 0/0:0.0,-18.8,-111.99:2:99:81:4 1/0:-56.82,0.0,-300.0:26:99:331:6 0/0:0.0,-24.6,-128.4:3:99:92:4 0/0:0.0,-33.99,-185.13:2:99:154:8 0/0:0.0,-22.48,-131.83:2:99:96:2 0/0:0.0,-28.57,-210.89:14:99:168:2 0/0:0.0,-93.76,-300.0:24:99:429:5 0/0:0.0,-113.5,-300.0:22:99:517:4 0/0:0.0,-104.47,-300.0:24:99:431:1 0/0:0.0,-99.21,-300.0:23:99:454:1 0/0:0.0,-100.76,-300.0:27:99:481:4 0/0:0.0,-101.89,-300.0:24:99:462:4 0/0:0.0,-132.39,-300.0:24:99:580:7 0/0:0.0,-119.86,-300.0:23:99:485:2 0/0:0.0,-105.92,-300.0:25:99:498:6 0/0:0.0,-125.0,-300.0:28:99:560:6 0/0:0.0,-300.0,-300.0:26:99:1645:16 0/0:0.0,-104.8,-300.0:24:99:448:3 0/0:0.0,-169.09,-300.0:27:99:795:8 0/0:0.0,-100.08,-300.0:28:99:549:7 0/0:0.0,-173.73,-300.0:26:99:774:6 0/0:0.0,-90.91,-300.0:22:99:386:6 0/0:0.0,-87.98,-300.0:33:99:415:3 0/0:0.0,-124.18,-300.0:24:99:559:4 0/0:0.0,-145.2,-300.0:23:99:639:6 0/0:0.0,-25.41,-221.4:17:99:190:4 0/0:0.0,-20.48,-238.61:18:99:222:2 0/0:0.0,-29.42,-194.59:16:99:130:2 0/0:0.0,-32.53,-216.58:13:99:187:3 0/0:0.0,-26.29,-206.26:21:99:174:5 0/0:0.0,-22.11,-211.38:16:99:178:4 0/0:0.0,-15.33,-133.75:16:99:97:1 0/0:0.0,-36.53,-224.58:14:99:165:3 0/0:0.0,-28.7,-230.14:13:99:185:6 0/0:0.0,-24.62,-225.59:17:99:182:2 0/0:0.0,-28.55,-202.95:15:99:158:0 0/0:0.0,-24.38,-227.87:18:99:195:3 0/0:0.0,-19.35,-162.05:21:99:118:2 0/0:0.0,-33.27,-170.44:14:99:130:3 0/0:0.0,-26.19,-169.81:16:99:135:1 0/0:0.0,-16.04,-251.04:19:99:228:2 0/0:0.0,-3.05,-202.33:19:31:193:3 0/0:0.0,-109.87,-300.0:23:99:529:5 0/0:0.0,-108.63,-300.0:26:99:452:2 0/0:0.0,-145.83,-300.0:27:99:602:7 0/0:0.0,-219.62,-300.0:26:99:1007:7 chrXII 259721 . C CT 46 SC;badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=17;HapScore=1;MGOF=26;MMLQ=12;MQ=59.93;NF=89;NR=131;PP=46;QD=0.25;SC=CTTCTTTTTTCTTTTTTTTTT;SbPval=0.58;Source=Platypus;TC=20212;TCF=9796;TCR=10416;TR=220;WE=259744;WS=259699 GT:GL:GOF:GQ:NR:NV 0/1:-5.85,0.0,-300.0:24:59:322:6 0/0:0.0,-55.12,-300.0:2:99:229:7 0/0:0.0,-41.25,-239.54:2:99:144:6 0/0:0.0,-25.15,-161.8:1:99:86:4 0/0:0.0,-7.92,-300.0:26:79:281:7 0/0:0.0,-24.42,-173.15:1:99:91:1 0/0:0.0,-40.12,-243.08:2:99:158:4 0/0:0.0,-28.15,-171.2:1:99:99:2 0/0:0.0,-37.06,-278.99:11:99:189:4 0/0:0.0,-100.34,-300.0:20:99:480:5 0/0:0.0,-146.03,-300.0:22:99:647:5 0/0:0.0,-109.25,-300.0:23:99:510:6 0/0:0.0,-119.83,-300.0:21:99:496:5 0/0:0.0,-119.02,-300.0:24:99:574:4 0/0:0.0,-97.35,-300.0:24:99:496:5 0/0:0.0,-166.76,-300.0:21:99:742:9 0/0:0.0,-104.45,-300.0:22:99:524:2 0/0:0.0,-109.88,-300.0:20:99:498:0 0/0:0.0,-152.66,-300.0:19:99:640:5 0/0:0.0,-300.0,-300.0:21:99:1953:16 0/0:0.0,-130.32,-300.0:22:99:563:5 0/0:0.0,-222.38,-300.0:19:99:1034:9 0/0:0.0,-132.32,-300.0:22:99:595:7 0/0:0.0,-157.17,-300.0:19:99:748:2 0/0:0.0,-112.07,-300.0:23:99:485:7 0/0:0.0,-119.44,-300.0:18:99:478:4 0/0:0.0,-137.67,-300.0:20:99:616:3 0/0:0.0,-183.12,-300.0:21:99:876:8 0/0:0.0,-28.56,-205.28:9:99:137:0 0/0:0.0,-35.74,-271.76:11:99:176:6 0/0:0.0,-29.73,-232.88:14:99:156:6 0/0:0.0,-38.68,-273.79:9:99:188:4 0/0:0.0,-41.7,-264.78:8:99:180:2 0/0:0.0,-34.96,-268.67:10:99:183:2 0/0:0.0,-19.77,-162.94:11:99:91:2 0/0:0.0,-32.86,-257.33:11:99:173:5 0/0:0.0,-40.94,-286.02:12:99:183:1 0/0:0.0,-31.69,-269.9:11:99:181:2 0/0:0.0,-29.88,-214.46:10:99:139:0 0/0:0.0,-37.16,-290.82:14:99:206:6 0/0:0.0,-27.4,-207.35:10:99:132:1 0/0:0.0,-29.89,-214.2:10:99:130:1 0/0:0.0,-30.68,-225.66:10:99:137:2 0/0:0.0,-40.2,-300.0:14:99:183:3 0/0:0.0,-34.57,-269.11:11:99:177:4 0/0:0.0,-122.73,-300.0:25:99:597:4 0/0:0.0,-112.58,-300.0:21:99:515:6 0/0:0.0,-160.82,-300.0:21:99:697:4 0/0:0.0,-226.48,-300.0:22:99:1097:11 chrXII 259732 . TC T 46 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=10;HapScore=1;MGOF=26;MMLQ=12;MQ=59.94;NF=85;NR=130;PP=46;QD=0.255813953488;SC=TTTTTTTTTTTCTACATTAAA;SbPval=0.52;Source=Platypus;TC=18446;TCF=9050;TCR=9396;TR=215;WE=259744;WS=259699 GT:GL:GOF:GQ:NR:NV 0/1:-5.85,0.0,-300.0:24:59:277:6 0/0:0.0,-55.12,-300.0:2:99:192:7 0/0:0.0,-41.25,-300.0:2:99:137:6 0/0:0.0,-25.15,-257.87:1:99:79:4 0/0:0.0,-7.92,-300.0:26:79:253:7 0/0:0.0,-24.42,-258.97:1:99:77:1 0/0:0.0,-40.12,-300.0:2:99:134:4 0/0:0.0,-28.15,-293.17:1:99:91:3 0/0:0.0,-37.06,-300.0:11:99:178:4 0/0:0.0,-100.34,-300.0:20:99:439:5 0/0:0.0,-146.03,-300.0:22:99:595:5 0/0:0.0,-109.25,-300.0:23:99:457:6 0/0:0.0,-119.83,-300.0:21:99:460:5 0/0:0.0,-119.02,-300.0:24:99:521:4 0/0:0.0,-97.35,-300.0:24:99:441:5 0/0:0.0,-166.76,-300.0:21:99:677:9 0/0:0.0,-104.45,-300.0:22:99:462:2 0/0:0.0,-109.88,-300.0:20:99:459:0 0/0:0.0,-152.66,-300.0:19:99:598:5 0/0:0.0,-300.0,-300.0:21:99:1781:15 0/0:0.0,-130.32,-300.0:22:99:510:5 0/0:0.0,-222.38,-300.0:19:99:919:9 0/0:0.0,-132.32,-300.0:22:99:540:6 0/0:0.0,-157.17,-300.0:19:99:684:2 0/0:0.0,-112.07,-300.0:23:99:438:5 0/0:0.0,-119.44,-300.0:18:99:440:4 0/0:0.0,-137.67,-300.0:20:99:568:3 0/0:0.0,-183.12,-300.0:21:99:801:8 0/0:0.0,-28.56,-300.0:9:99:133:0 0/0:0.0,-35.74,-300.0:11:99:164:6 0/0:0.0,-29.73,-300.0:14:99:146:6 0/0:0.0,-38.68,-300.0:9:99:182:4 0/0:0.0,-41.7,-300.0:8:99:177:1 0/0:0.0,-34.96,-300.0:10:99:171:2 0/0:0.0,-19.77,-245.57:11:99:87:2 0/0:0.0,-32.86,-300.0:11:99:161:5 0/0:0.0,-40.94,-300.0:12:99:176:1 0/0:0.0,-31.69,-300.0:11:99:168:2 0/0:0.0,-29.88,-300.0:10:99:130:0 0/0:0.0,-37.16,-300.0:14:99:196:6 0/0:0.0,-27.4,-300.0:10:99:130:1 0/0:0.0,-29.89,-300.0:10:99:124:1 0/0:0.0,-30.68,-300.0:10:99:128:2 0/0:0.0,-40.2,-300.0:14:99:178:3 0/0:0.0,-34.57,-300.0:11:99:168:4 0/0:0.0,-122.73,-300.0:25:99:531:4 0/0:0.0,-112.58,-300.0:21:99:475:6 0/0:0.0,-160.82,-300.0:21:99:638:4 0/0:0.0,-226.48,-300.0:22:99:975:10 chrXII 263305 . AC A 328 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=3;HapScore=1;MGOF=34;MMLQ=12;MQ=59.91;NF=138;NR=186;PP=328;QD=1.11728395062;SC=AGATAGTAAAACCAAAAAAAA;SbPval=0.93;Source=Platypus;TC=19706;TCF=9056;TCR=10650;TR=324;WE=263329;WS=263290 GT:GL:GOF:GQ:NR:NV 1/0:-12.08,0.0,-300.0:25:99:316:1 0/0:0.0,-54.2,-300.0:2:99:184:8 0/0:0.0,-38.5,-293.14:1:99:134:4 0/0:0.0,-27.97,-214.3:2:99:91:4 1/0:-25.03,0.0,-300.0:34:99:351:3 0/0:0.0,-28.71,-220.99:1:99:91:6 0/0:0.0,-43.55,-300.0:2:99:148:7 0/0:0.0,-27.62,-231.65:2:99:102:4 0/0:0.0,-44.83,-300.0:14:99:156:3 0/0:0.0,-125.23,-300.0:20:99:451:5 0/0:0.0,-163.29,-300.0:23:99:601:8 0/0:0.0,-142.49,-300.0:25:99:502:5 0/0:0.0,-152.03,-300.0:24:99:554:10 0/0:0.0,-161.1,-300.0:21:99:581:6 0/0:0.0,-128.41,-300.0:22:99:472:7 0/0:0.0,-181.03,-300.0:20:99:676:7 0/0:0.0,-124.83,-300.0:22:99:505:13 0/0:0.0,-148.31,-300.0:22:99:543:8 0/0:0.0,-166.25,-300.0:18:99:615:13 0/0:0.0,-300.0,-300.0:23:99:1945:23 0/0:0.0,-134.2,-300.0:23:99:499:8 0/0:0.0,-255.48,-300.0:24:99:993:12 0/0:0.0,-142.79,-300.0:25:99:598:8 0/0:0.0,-197.86,-300.0:21:99:804:13 0/0:0.0,-120.72,-300.0:22:99:459:5 0/0:0.0,-137.41,-300.0:18:99:512:12 0/0:0.0,-163.39,-300.0:24:99:639:5 0/0:0.0,-218.49,-300.0:21:99:822:8 0/0:0.0,-26.47,-244.46:22:99:122:2 0/0:0.0,-47.92,-300.0:28:99:166:8 0/0:0.0,-39.24,-297.65:21:99:135:4 0/0:0.0,-39.42,-300.0:20:99:158:1 0/0:0.0,-48.78,-300.0:20:99:171:5 0/0:0.0,-38.69,-300.0:15:99:146:2 0/0:0.0,-28.0,-215.27:15:99:89:1 0/0:0.0,-37.22,-300.0:19:99:136:5 0/0:0.0,-54.63,-300.0:14:99:192:4 0/0:0.0,-48.69,-300.0:20:99:168:7 0/0:0.0,-49.86,-300.0:18:99:169:0 0/0:0.0,-61.4,-300.0:16:99:205:3 0/0:0.0,-37.65,-300.0:23:99:140:3 0/0:0.0,-35.31,-285.75:17:99:127:6 0/0:0.0,-33.03,-272.65:22:99:122:2 0/0:0.0,-47.0,-300.0:28:99:168:6 0/0:0.0,-39.04,-300.0:21:99:142:4 0/0:0.0,-151.79,-300.0:21:99:566:10 0/0:0.0,-121.21,-300.0:19:99:473:8 0/0:0.0,-176.17,-300.0:26:99:751:12 0/0:0.0,-262.34,-300.0:24:99:1016:15 chrXII 263307 . CA AA,CAA 1179 badReads;QD;alleleBias BRF=0.03;FR=0.0204,0.0204;HP=13;HapScore=1;MGOF=34;MMLQ=12;MQ=59.9;NF=24,136;NR=1072,187;PP=1179,359;QD=1.1074554859;SC=ATAGTAAAACCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=20104;TCF=9336;TCR=10768;TR=1096,323;WE=263329;WS=263290 GT:GL:GOF:GQ:NR:NV 1/0:-1,-1,-1:25:3:338,347:49,1 0/0:-1,-1,-1:2:99:191,203:4,8 0/0:-1,-1,-1:1:99:133,140:4,4 0/0:-1,-1,-1:2:99:98,102:3,4 1/0:-1,-1,-1:34:3:383,376:77,3 0/0:-1,-1,-1:2:99:98,97:1,5 0/0:-1,-1,-1:2:99:156,159:6,7 0/0:-1,-1,-1:2:99:108,100:6,4 0/0:-1,-1,-1:14:99:155,164:7,3 0/0:-1,-1,-1:20:99:462,492:21,5 0/0:-1,-1,-1:23:99:618,648:31,8 0/0:-1,-1,-1:25:99:509,540:26,5 0/0:-1,-1,-1:24:99:553,598:28,10 0/0:-1,-1,-1:21:99:585,623:35,6 0/0:-1,-1,-1:22:99:479,506:31,7 0/0:-1,-1,-1:20:99:697,726:31,7 0/0:-1,-1,-1:22:99:519,533:33,13 0/0:-1,-1,-1:22:99:556,582:37,8 0/0:-1,-1,-1:18:99:640,655:23,13 0/0:-1,-1,-1:23:99:2001,2101:111,24 0/0:-1,-1,-1:23:99:509,535:26,8 0/0:-1,-1,-1:24:99:1026,1093:69,12 0/0:-1,-1,-1:25:99:604,630:31,8 0/0:-1,-1,-1:21:99:830,896:42,13 0/0:-1,-1,-1:22:99:467,483:27,5 0/0:-1,-1,-1:18:99:537,547:22,12 0/0:-1,-1,-1:24:99:652,686:43,4 0/0:-1,-1,-1:21:99:832,876:38,8 0/0:-1,-1,-1:22:99:122,124:5,2 0/0:-1,-1,-1:28:99:168,176:9,8 0/0:-1,-1,-1:21:99:134,144:6,4 0/0:-1,-1,-1:20:99:157,159:10,1 0/0:-1,-1,-1:20:99:169,181:6,5 0/0:-1,-1,-1:15:99:145,155:8,2 0/0:-1,-1,-1:15:99:91,97:7,1 0/0:-1,-1,-1:19:99:138,145:4,5 0/0:-1,-1,-1:14:99:192,205:7,4 0/0:-1,-1,-1:20:99:161,168:6,7 0/0:-1,-1,-1:18:99:164,179:2,0 0/0:-1,-1,-1:16:99:203,214:4,3 0/0:-1,-1,-1:23:99:135,143:5,3 0/0:-1,-1,-1:17:99:128,138:2,6 0/0:-1,-1,-1:22:99:121,130:5,2 0/0:-1,-1,-1:28:99:166,173:8,6 0/0:-1,-1,-1:21:99:147,151:8,4 0/0:-1,-1,-1:21:99:572,602:27,10 0/0:-1,-1,-1:19:99:478,516:22,8 0/0:-1,-1,-1:26:99:747,794:32,12 0/0:-1,-1,-1:24:99:1030,1090:51,15 chrXII 264070 . A AT 337 badReads;QD;alleleBias;strandBias BRF=0.4;FR=0.0821;HP=5;HapScore=1;MGOF=45;MMLQ=14;MQ=41.86;NF=126;NR=292;PP=337;QD=0.868421052632;SC=CCCTTAGTGCATTTTTATTTT;SbPval=0.0;Source=Platypus;TC=18667;TCF=9710;TCR=8957;TR=418;WE=264118;WS=264029 GT:GL:GOF:GQ:NR:NV 0/1:-12.67,0.0,-179.46:45:99:305:3 0/0:0.0,-2.76,-51.44:2:28:172:10 0/0:0.0,-2.63,-34.93:3:26:116:6 0/0:0.0,-3.04,-19.82:2:30:63:1 0/0:0.0,-2.97,-164.38:25:30:285:6 0/0:0.0,-1.89,-18.55:2:19:68:2 0/0:0.0,-2.46,-38.09:2:25:126:8 0/0:0.0,-3.38,-19.83:2:34:77:5 0/0:0.0,-4.22,-25.78:23:42:82:1 0/0:0.0,-10.44,-273.15:26:99:478:13 0/0:0.0,-18.2,-300.0:23:99:616:13 0/0:0.0,-31.22,-291.11:27:99:437:11 0/0:0.0,-24.52,-300.0:24:99:572:11 0/0:0.0,-30.6,-300.0:26:99:596:12 0/0:0.0,-12.88,-281.2:25:99:516:8 0/0:0.0,-41.91,-300.0:22:99:762:18 0/0:0.0,-37.08,-300.0:24:99:526:7 0/0:0.0,-29.99,-300.0:26:99:546:6 0/0:0.0,-30.07,-300.0:27:99:660:17 0/0:0.0,-110.07,-300.0:25:99:2007:54 0/0:0.0,-30.06,-300.0:23:99:536:14 0/0:0.0,-46.42,-300.0:26:99:1090:20 0/0:0.0,-2.86,-291.87:27:29:551:9 0/0:0.0,-43.3,-300.0:28:99:847:17 0/0:0.0,-33.05,-300.0:24:99:507:7 0/0:0.0,-27.04,-300.0:21:99:505:12 0/0:0.0,-17.87,-300.0:26:99:688:12 0/0:0.0,-43.97,-300.0:25:99:902:13 0/1:-0.99,0.0,-19.47:14:10:69:1 0/0:0.0,-2.49,-18.35:19:25:66:1 0/0:0.0,-3.17,-17.59:10:32:66:1 0/0:0.0,-4.51,-22.41:20:45:72:3 0/1:-5.57,0.0,-10.92:22:56:62:3 0/1:-4.97,0.0,-23.5:15:50:72:1 0/0:0.0,-4.03,-21.2:12:40:48:0 0/1:-8.23,0.0,-19.0:33:82:70:2 0/1:-5.02,0.0,-14.41:31:50:57:2 0/0:0.0,-0.92,-29.28:19:10:96:5 0/0:0.0,-0.74,-22.87:7:8:72:5 0/0:0.0,-0.87,-28.46:27:9:106:0 0/0:0.0,-2.77,-22.94:29:28:70:3 0/0:0.0,-4.0,-23.59:23:40:67:1 ./.:0.0,-0.1,-15.26:31:4:53:1 0/0:0.0,-0.35,-23.82:19:5:75:1 0/1:-1.81,0.0,-22.81:15:18:74:1 0/0:0.0,-40.08,-300.0:26:99:612:15 0/0:0.0,-24.31,-300.0:24:99:508:12 0/0:0.0,-6.78,-300.0:30:68:652:21 0/0:0.0,-47.47,-300.0:28:99:1064:23 chrXII 264075 . TA T 2974 badReads;alleleBias BRF=0.4;FR=0.4176;HP=4;HapScore=1;MGOF=45;MMLQ=12;MQ=41.96;NF=140;NR=327;PP=2974;QD=20;SC=AGTGCATTTTTATTTTTTTTT;SbPval=0.01;Source=Platypus;TC=19121;TCF=9557;TCR=9564;TR=467;WE=264118;WS=264029 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-12.78,-177.85:45:99:325:4 0/1:-2.76,0.0,-57.53:2:28:199:15 0/1:-2.63,0.0,-38.12:3:26:137:8 0/1:-3.03,0.0,-18.51:2:30:68:5 0/1:-2.97,0.0,-144.17:25:30:298:6 0/1:-1.89,0.0,-20.14:2:19:81:6 0/1:-2.45,0.0,-42.07:2:25:152:13 0/1:-3.29,0.0,-18.82:2:33:86:6 0/1:-4.22,0.0,-25.07:23:42:84:1 0/1:-10.44,0.0,-224.64:26:99:483:13 0/1:-16.74,0.0,-300.0:23:99:625:15 0/1:-23.79,0.0,-212.59:27:99:451:13 0/1:-19.91,0.0,-262.91:24:99:573:11 0/1:-22.28,0.0,-275.77:26:99:589:12 0/1:-7.89,0.0,-238.59:25:79:510:6 0/1:-30.64,0.0,-300.0:22:99:795:21 0/1:-27.45,0.0,-254.88:24:99:531:8 0/1:-23.72,0.0,-256.21:26:99:566:9 0/1:-25.25,0.0,-300.0:27:99:682:20 0/1:-76.98,0.0,-300.0:25:99:1997:55 0/1:-23.05,0.0,-237.4:23:99:547:15 0/1:-37.57,0.0,-300.0:26:99:1094:21 0/1:-2.86,0.0,-258.66:27:29:555:10 0/1:-29.98,0.0,-300.0:28:99:869:18 0/1:-24.0,0.0,-245.41:24:99:514:7 0/1:-21.91,0.0,-243.25:21:99:516:14 0/1:-16.31,0.0,-300.0:26:99:697:13 0/1:-35.27,0.0,-300.0:25:99:889:14 0/0:0.0,-1.03,-22.16:14:11:83:1 0/1:-2.49,0.0,-17.24:19:25:75:1 0/1:-3.16,0.0,-16.38:10:32:77:1 0/1:-4.5,0.0,-19.9:20:45:86:3 0/0:0.0,-5.61,-17.81:22:56:76:3 0/0:0.0,-4.97,-31.19:15:50:79:1 0/1:-4.02,0.0,-17.78:12:40:54:0 0/0:0.0,-12.44,-34.09:33:99:87:2 0/0:0.0,-5.08,-22.2:31:51:71:3 0/1:-0.92,0.0,-34.17:19:10:105:6 0/1:-0.74,0.0,-24.85:7:8:82:5 0/1:-0.86,0.0,-29.64:27:9:120:0 0/1:-2.71,0.0,-20.92:29:27:70:3 0/1:-3.33,0.0,-22.28:23:33:77:1 ./.:-0.1,0.0,-17.44:31:4:54:1 0/1:-0.34,0.0,-24.1:19:5:84:1 0/0:0.0,-1.81,-27.1:15:18:84:1 0/1:-26.62,0.0,-275.44:26:99:615:15 0/1:-21.08,0.0,-252.15:24:99:517:12 0/1:-6.78,0.0,-300.0:30:68:663:24 0/1:-40.16,0.0,-300.0:28:99:1049:24 chrXII 264076 . AT ATT,TT 3000 badReads;alleleBias BRF=0.4;FR=0.5064,0.0824;HP=25;HapScore=1;MGOF=45;MMLQ=12;MQ=43.34;NF=158,94;NR=331,3889;PP=3000,372;QD=20;SC=GTGCATTTTTATTTTTTTTTT;SbPval=0.99;Source=Platypus;TC=22043;TCF=10903;TCR=11140;TR=489,3983;WE=264118;WS=264029 GT:GL:GOF:GQ:NR:NV 0/1:-1,-1,-1:45:3:378,344:6,53 0/1:-1,-1,-1:2:27:202,205:13,58 0/1:-1,-1,-1:3:12:164,148:7,41 0/1:-1,-1,-1:2:24:66,75:4,23 0/1:-1,-1,-1:25:30:341,319:9,56 0/1:-1,-1,-1:2:12:100,92:4,27 0/1:-1,-1,-1:2:4:148,166:12,45 0/1:-1,-1,-1:2:10:94,96:5,38 0/1:-1,-1,-1:23:41:134,89:1,25 0/1:-1,-1,-1:26:99:556,500:15,99 0/1:-1,-1,-1:23:99:696,641:16,103 0/1:-1,-1,-1:27:99:512,464:12,99 0/1:-1,-1,-1:24:99:629,582:11,105 0/1:-1,-1,-1:26:99:689,604:11,98 0/1:-1,-1,-1:25:79:575,535:7,95 0/1:-1,-1,-1:22:99:882,822:22,181 0/1:-1,-1,-1:24:99:595,551:8,103 0/1:-1,-1,-1:26:99:638,583:9,119 0/1:-1,-1,-1:27:99:765,720:21,137 0/1:-1,-1,-1:25:99:2274,2056:60,382 0/1:-1,-1,-1:23:99:597,565:15,107 0/1:-1,-1,-1:26:99:1235,1156:22,221 0/1:-1,-1,-1:27:29:658,570:12,99 0/1:-1,-1,-1:28:99:988,901:21,161 0/1:-1,-1,-1:24:99:575,540:8,98 0/1:-1,-1,-1:21:99:591,562:17,107 0/1:-1,-1,-1:26:99:790,728:15,129 0/1:-1,-1,-1:25:99:1025,934:14,179 0/1:-1,-1,-1:14:3:111,88:1,30 0/1:-1,-1,-1:19:24:97,80:0,28 0/1:-1,-1,-1:10:29:113,76:1,29 0/1:-1,-1,-1:20:42:145,91:4,32 0/1:-1,-1,-1:22:3:118,78:5,32 0/1:-1,-1,-1:15:3:107,79:2,22 0/1:-1,-1,-1:12:39:73,55:0,17 0/1:-1,-1,-1:33:3:131,89:3,26 0/1:-1,-1,-1:31:3:105,74:3,27 0/1:-1,-1,-1:19:10:145,103:7,25 0/1:-1,-1,-1:7:9:124,86:5,23 0/1:-1,-1,-1:27:10:158,123:0,45 0/1:-1,-1,-1:29:27:90,71:3,23 0/1:-1,-1,-1:23:33:105,80:1,24 0/1:-1,-1,-1:31:5:91,61:1,18 0/1:-1,-1,-1:19:6:109,87:1,27 0/1:-1,-1,-1:15:3:102,89:1,28 0/1:-1,-1,-1:26:99:710,643:15,132 0/1:-1,-1,-1:24:99:580,544:11,90 0/1:-1,-1,-1:30:68:759,674:24,117 0/1:-1,-1,-1:28:99:1173,1085:24,200 chrXII 291384 . ACA GCG 2947 PASS BRF=0.02;FR=1.0000;HP=3;HapScore=1;MGOF=16;MMLQ=32;MQ=59.98;NF=8444;NR=8508;PP=2947;QD=20;SC=AAAACTTGGGACATCGTAAAT;SbPval=0.51;Source=Platypus;TC=17909;TCF=8767;TCR=9142;TR=16952;WE=291408;WS=291374 GT:GL:GOF:GQ:NR:NV 1/1:-300.0,-162.03,0.0:7:99:412:388 1/1:-300.0,-99.26,0.0:0:99:193:181 1/1:-300.0,-84.83,0.0:1:99:145:135 1/1:-300.0,-69.78,0.0:0:99:86:83 1/1:-300.0,-143.93,0.0:7:99:356:344 1/1:-300.0,-65.06,0.0:2:99:74:68 1/1:-300.0,-77.68,0.0:1:99:118:110 1/1:-300.0,-76.62,0.0:1:99:110:106 1/1:-300.0,-94.39,0.0:1:99:169:161 1/1:-300.0,-154.0,0.0:11:99:398:367 1/1:-300.0,-208.05,0.0:12:99:565:542 1/1:-300.0,-163.68,0.0:12:99:422:399 1/1:-300.0,-189.57,0.0:13:99:505:480 1/1:-300.0,-206.95,0.0:16:99:563:540 1/1:-300.0,-171.43,0.0:11:99:451:439 1/1:-300.0,-226.96,0.0:11:99:648:617 1/1:-300.0,-175.43,0.0:13:99:467:440 1/1:-300.0,-177.62,0.0:13:99:473:443 1/1:-300.0,-203.66,0.0:11:99:578:552 1/1:-300.0,-300.0,0.0:12:99:1623:1543 1/1:-300.0,-175.92,0.0:12:99:472:444 1/1:-300.0,-274.78,0.0:12:99:835:789 1/1:-300.0,-192.0,0.0:15:99:523:489 1/1:-300.0,-245.26,0.0:13:99:696:655 1/1:-300.0,-159.31,0.0:12:99:412:383 1/1:-300.0,-160.12,0.0:10:99:424:394 1/1:-300.0,-199.06,0.0:13:99:540:510 1/1:-300.0,-248.64,0.0:10:99:711:680 1/1:-300.0,-90.53,0.0:2:99:159:153 1/1:-300.0,-93.6,0.0:3:99:184:169 1/1:-300.0,-82.93,0.0:2:99:133:127 1/1:-300.0,-97.49,0.0:1:99:183:172 1/1:-300.0,-81.2,0.0:1:99:127:122 1/1:-300.0,-78.0,0.0:2:99:117:113 1/1:-300.0,-68.18,0.0:2:99:83:80 1/1:-300.0,-82.67,0.0:4:99:131:124 1/1:-300.0,-80.9,0.0:2:99:126:116 1/1:-300.0,-88.15,0.0:3:99:148:141 1/1:-300.0,-91.07,0.0:4:99:160:149 1/1:-300.0,-97.21,0.0:1:99:180:171 1/1:-300.0,-77.83,0.0:3:99:115:111 1/1:-300.0,-82.42,0.0:2:99:128:122 1/1:-300.0,-73.69,0.0:2:99:98:94 1/1:-300.0,-91.86,0.0:3:99:168:160 1/1:-300.0,-88.44,0.0:3:99:159:150 1/1:-300.0,-189.5,0.0:11:99:512:484 1/1:-300.0,-166.28,0.0:13:99:442:406 1/1:-300.0,-230.65,0.0:11:99:635:606 1/1:-300.0,-300.0,0.0:12:99:952:900 chrXII 292023 . TG T 611 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=2;HapScore=1;MGOF=35;MMLQ=12;MQ=59.82;NF=257;NR=261;PP=611;QD=1.23745173745;SC=AGTATTTGTTTGAAAAAAAAA;SbPval=0.06;Source=Platypus;TC=19082;TCF=8840;TCR=10242;TR=518;WE=292057;WS=291967 GT:GL:GOF:GQ:NR:NV 1/0:-23.08,0.0,-300.0:35:99:334:5 0/0:0.0,-45.94,-300.0:1:99:173:15 0/0:0.0,-36.86,-300.0:2:99:129:14 0/0:0.0,-23.61,-261.06:2:99:86:13 1/0:-41.92,0.0,-300.0:29:99:309:1 0/0:0.0,-25.65,-246.36:1:99:86:8 0/0:0.0,-36.05,-300.0:2:99:126:15 0/0:0.0,-33.67,-300.0:2:99:112:11 0/0:0.0,-23.29,-300.0:24:99:201:4 0/0:0.0,-90.36,-300.0:26:99:460:6 0/0:0.0,-109.19,-300.0:25:99:601:10 0/0:0.0,-85.47,-300.0:28:99:494:11 0/0:0.0,-87.61,-300.0:24:99:505:18 0/0:0.0,-86.77,-300.0:30:99:526:14 0/0:0.0,-80.55,-300.0:24:99:404:9 0/0:0.0,-109.23,-300.0:25:99:715:18 0/0:0.0,-99.21,-300.0:27:99:538:13 0/0:0.0,-89.78,-300.0:24:99:513:11 0/0:0.0,-93.4,-300.0:25:99:578:11 0/0:0.0,-293.6,-300.0:27:99:1790:52 0/0:0.0,-68.48,-300.0:26:99:486:10 0/0:0.0,-171.42,-300.0:26:99:958:23 0/0:0.0,-83.88,-300.0:28:99:533:10 0/0:0.0,-126.24,-300.0:26:99:731:14 0/0:0.0,-98.01,-300.0:27:99:465:13 0/0:0.0,-92.22,-300.0:24:99:434:11 0/0:0.0,-105.76,-300.0:25:99:672:16 0/0:0.0,-128.58,-300.0:26:99:800:24 0/0:0.0,-23.6,-280.36:18:99:127:5 0/0:0.0,-19.2,-290.16:23:99:158:3 0/0:0.0,-16.22,-255.16:23:99:142:1 0/0:0.0,-35.54,-300.0:19:99:181:13 0/0:0.0,-22.51,-300.0:20:99:177:6 0/0:0.0,-30.82,-300.0:17:99:183:7 0/0:0.0,-17.59,-212.56:22:99:95:1 0/0:0.0,-22.56,-300.0:26:99:148:6 0/0:0.0,-29.08,-300.0:22:99:159:7 0/0:0.0,-37.46,-300.0:22:99:199:9 0/0:0.0,-35.33,-300.0:20:99:182:3 0/0:0.0,-36.35,-300.0:20:99:228:11 0/0:0.0,-24.33,-262.96:18:99:117:3 0/0:0.0,-28.19,-272.36:28:99:132:1 0/0:0.0,-28.9,-300.0:22:99:138:6 0/0:0.0,-37.51,-300.0:23:99:192:5 0/0:0.0,-30.5,-300.0:23:99:188:7 0/0:0.0,-104.85,-300.0:25:99:568:8 0/0:0.0,-80.78,-300.0:23:99:410:10 0/0:0.0,-118.65,-300.0:25:99:632:10 0/0:0.0,-173.42,-300.0:25:99:967:16 chrXII 292024 . G GA 641 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=17;HapScore=1;MGOF=35;MMLQ=12;MQ=59.82;NF=259;NR=275;PP=641;QD=1.20599250936;SC=GTATTTGTTTGAAAAAAAAAA;SbPval=0.05;Source=Platypus;TC=20994;TCF=9724;TCR=11270;TR=534;WE=292057;WS=291967 GT:GL:GOF:GQ:NR:NV 1/0:-23.08,0.0,-252.13:35:99:369:5 0/0:0.0,-45.94,-175.88:1:99:211:15 0/0:0.0,-36.86,-137.58:2:99:141:14 0/0:0.0,-23.61,-93.95:2:99:87:12 1/0:-41.92,0.0,-229.67:29:99:346:1 0/0:0.0,-25.65,-98.57:1:99:90:7 0/0:0.0,-36.04,-125.18:2:99:154:14 0/0:0.0,-33.67,-116.48:2:99:127:11 0/0:0.0,-23.29,-185.73:24:99:215:4 0/0:0.0,-90.36,-300.0:26:99:492:6 0/0:0.0,-109.19,-300.0:25:99:663:11 0/0:0.0,-85.47,-300.0:28:99:543:11 0/0:0.0,-87.61,-300.0:24:99:559:17 0/0:0.0,-86.77,-300.0:30:99:585:14 0/0:0.0,-80.55,-300.0:24:99:463:10 0/0:0.0,-109.23,-300.0:25:99:799:22 0/0:0.0,-99.21,-300.0:27:99:573:14 0/0:0.0,-89.78,-300.0:24:99:558:12 0/0:0.0,-93.4,-300.0:25:99:625:10 0/0:0.0,-293.6,-300.0:27:99:1970:53 0/0:0.0,-68.48,-300.0:26:99:525:10 0/0:0.0,-171.42,-300.0:26:99:1056:25 0/0:0.0,-83.88,-300.0:28:99:584:12 0/0:0.0,-126.24,-300.0:26:99:811:16 0/0:0.0,-98.01,-300.0:27:99:506:15 0/0:0.0,-92.22,-300.0:24:99:469:12 0/0:0.0,-105.76,-300.0:25:99:728:16 0/0:0.0,-128.58,-300.0:26:99:885:24 0/0:0.0,-23.6,-138.26:18:99:140:6 0/0:0.0,-19.2,-151.08:23:99:168:4 0/0:0.0,-16.22,-129.83:23:99:149:1 0/0:0.0,-35.54,-167.9:19:99:202:11 0/0:0.0,-22.51,-148.75:20:99:193:7 0/0:0.0,-30.82,-163.43:17:99:205:7 0/0:0.0,-17.59,-107.91:22:99:106:1 0/0:0.0,-22.56,-149.38:26:99:166:6 0/0:0.0,-29.08,-168.24:22:99:175:7 0/0:0.0,-37.46,-207.78:22:99:218:9 0/0:0.0,-35.33,-197.31:20:99:200:3 0/0:0.0,-36.35,-219.84:20:99:250:11 0/0:0.0,-24.33,-127.43:18:99:142:3 0/0:0.0,-28.19,-153.1:28:99:147:1 0/0:0.0,-28.9,-140.22:22:99:152:6 0/0:0.0,-37.51,-210.59:23:99:203:5 0/0:0.0,-30.5,-190.91:23:99:204:7 0/0:0.0,-104.85,-300.0:25:99:615:9 0/0:0.0,-80.78,-300.0:23:99:452:10 0/0:0.0,-118.65,-300.0:25:99:698:11 0/0:0.0,-173.42,-300.0:25:99:1075:16 chrXII 306614 . AG A 810 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=2;HapScore=1;MGOF=31;MMLQ=12;MQ=59.96;NF=154;NR=182;PP=810;QD=2.55663958295;SC=GGCAGCAGTTAGGAAATAAAA;SbPval=0.75;Source=Platypus;TC=18501;TCF=8741;TCR=9760;TR=336;WE=306649;WS=306581 GT:GL:GOF:GQ:NR:NV 1/0:-51.86,0.0,-300.0:30:99:421:2 0/0:0.0,-53.74,-300.0:2:99:183:8 0/0:0.0,-39.41,-300.0:1:99:135:10 0/0:0.0,-26.03,-300.0:2:99:93:3 1/0:-34.92,0.0,-300.0:31:99:297:5 0/0:0.0,-35.68,-300.0:2:99:114:14 0/0:0.0,-49.05,-300.0:1:99:153:5 0/0:0.0,-36.49,-300.0:2:99:123:3 0/0:0.0,-40.69,-300.0:17:99:193:4 0/0:0.0,-110.52,-300.0:20:99:414:6 0/0:0.0,-143.45,-300.0:19:99:539:9 0/0:0.0,-115.61,-300.0:19:99:423:11 0/0:0.0,-143.5,-300.0:19:99:526:5 0/0:0.0,-154.29,-300.0:19:99:593:7 0/0:0.0,-103.32,-300.0:17:99:440:5 0/0:0.0,-187.89,-300.0:19:99:706:8 0/0:0.0,-135.77,-300.0:17:99:511:9 0/0:0.0,-127.52,-300.0:17:99:454:4 0/0:0.0,-143.17,-300.0:17:99:593:7 0/0:0.0,-300.0,-300.0:19:99:1859:28 0/0:0.0,-141.9,-300.0:17:99:499:4 0/0:0.0,-225.63,-300.0:19:99:872:5 0/0:0.0,-140.45,-300.0:20:99:517:6 0/0:0.0,-196.51,-300.0:18:99:720:8 0/0:0.0,-111.32,-300.0:19:99:427:4 0/0:0.0,-113.99,-300.0:17:99:436:3 0/0:0.0,-155.75,-300.0:18:99:612:8 0/0:0.0,-191.39,-300.0:20:99:780:13 0/0:0.0,-32.68,-300.0:12:99:126:4 0/0:0.0,-36.5,-300.0:14:99:157:5 0/0:0.0,-38.2,-300.0:15:99:161:3 0/0:0.0,-46.46,-300.0:11:99:197:8 0/0:0.0,-37.27,-300.0:14:99:181:9 0/0:0.0,-41.19,-300.0:16:99:172:4 0/0:0.0,-11.87,-300.0:15:99:103:5 0/0:0.0,-50.76,-300.0:16:99:200:9 0/0:0.0,-37.81,-300.0:14:99:157:3 0/0:0.0,-49.49,-300.0:12:99:198:11 0/0:0.0,-42.94,-300.0:12:99:195:10 0/0:0.0,-50.74,-300.0:12:99:224:2 0/0:0.0,-31.19,-300.0:11:99:152:6 0/0:0.0,-33.02,-300.0:12:99:137:6 0/0:0.0,-31.84,-300.0:17:99:133:7 0/0:0.0,-35.48,-300.0:16:99:170:11 0/0:0.0,-48.94,-300.0:14:99:183:5 0/0:0.0,-136.86,-300.0:19:99:541:3 0/0:0.0,-99.63,-300.0:22:99:355:6 0/0:0.0,-92.27,-300.0:31:99:441:4 0/0:0.0,-145.25,-300.0:26:99:685:11 chrXII 306620 . TA AA,TAA 2185 badReads;QD;alleleBias BRF=0.03;FR=0.0204,0.0204;HP=15;HapScore=1;MGOF=31;MMLQ=12;MQ=59.95;NF=55,147;NR=1378,189;PP=2185,854;QD=1.54903783151;SC=AGTTAGGAAATAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=18947;TCF=9063;TCR=9884;TR=1433,336;WE=306649;WS=306581 GT:GL:GOF:GQ:NR:NV 1/0:-1,-1,-1:30:3:437,427:66,2 0/0:-1,-1,-1:2:99:192,196:19,7 0/0:-1,-1,-1:1:99:137,147:9,9 0/0:-1,-1,-1:2:99:104,102:6,3 1/0:-1,-1,-1:31:3:336,342:71,5 0/0:-1,-1,-1:3:99:122,125:2,14 0/0:-1,-1,-1:1:99:161,165:3,4 0/0:-1,-1,-1:2:99:130,135:7,3 0/0:-1,-1,-1:17:99:192,191:25,4 0/0:-1,-1,-1:20:99:424,444:20,6 0/0:-1,-1,-1:19:99:556,580:33,9 0/0:-1,-1,-1:19:99:434,450:29,11 0/0:-1,-1,-1:19:99:538,566:21,5 0/0:-1,-1,-1:19:99:596,649:41,7 0/0:-1,-1,-1:17:99:455,470:29,5 0/0:-1,-1,-1:19:99:721,753:39,8 0/0:-1,-1,-1:17:99:518,559:38,8 0/0:-1,-1,-1:17:99:491,503:25,4 0/0:-1,-1,-1:17:99:605,641:30,6 0/0:-1,-1,-1:19:99:1893,1989:133,29 0/0:-1,-1,-1:17:99:513,523:27,5 0/0:-1,-1,-1:19:99:914,946:55,5 0/0:-1,-1,-1:20:99:536,560:31,7 0/0:-1,-1,-1:18:99:743,778:57,9 0/0:-1,-1,-1:19:99:436,466:21,4 0/0:-1,-1,-1:17:99:467,466:31,3 0/0:-1,-1,-1:18:99:611,642:40,9 0/0:-1,-1,-1:20:99:797,822:43,13 0/0:-1,-1,-1:12:99:127,131:19,4 0/0:-1,-1,-1:14:99:166,161:22,5 0/0:-1,-1,-1:15:99:161,164:12,3 0/0:-1,-1,-1:11:99:190,198:25,8 0/0:-1,-1,-1:14:99:181,183:25,9 0/0:-1,-1,-1:16:99:168,175:17,4 0/0:-1,-1,-1:15:99:107,111:13,6 0/0:-1,-1,-1:16:99:193,203:20,9 0/0:-1,-1,-1:14:99:160,166:24,3 0/0:-1,-1,-1:12:99:184,203:15,11 0/0:-1,-1,-1:12:99:191,212:25,10 0/0:-1,-1,-1:12:99:218,223:35,2 0/0:-1,-1,-1:11:99:144,159:15,6 0/0:-1,-1,-1:12:99:133,149:13,6 0/0:-1,-1,-1:17:99:132,138:19,7 0/0:-1,-1,-1:16:99:178,175:22,11 0/0:-1,-1,-1:14:99:183,192:21,5 0/0:-1,-1,-1:19:99:539,566:32,3 0/0:-1,-1,-1:22:99:370,387:21,6 0/0:-1,-1,-1:31:99:451,470:26,4 0/0:-1,-1,-1:26:99:712,742:61,10 chrXII 315793 . C CTTTTTTT 297 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=13;HapScore=1;MGOF=29;MMLQ=12;MQ=59.96;NF=119;NR=102;PP=297;QD=1.38461538462;SC=GAGTACTATTCTTTTTTTTTT;SbPval=0.08;Source=Platypus;TC=20359;TCF=9832;TCR=10527;TR=221;WE=315822;WS=315780 GT:GL:GOF:GQ:NR:NV 0/1:-30.98,0.0,-300.0:28:99:405:7 0/0:0.0,-61.76,-300.0:1:99:194:4 0/0:0.0,-43.13,-300.0:1:99:146:5 0/0:0.0,-28.78,-264.6:1:99:81:1 0/0:0.0,-20.58,-300.0:29:99:375:5 0/0:0.0,-32.69,-300.0:2:99:107:1 0/0:0.0,-47.04,-300.0:2:99:150:3 0/0:0.0,-42.02,-300.0:1:99:137:5 0/0:0.0,-60.09,-300.0:5:99:201:4 0/0:0.0,-125.96,-300.0:15:99:424:5 0/0:0.0,-170.82,-300.0:18:99:576:7 0/0:0.0,-167.5,-300.0:16:99:548:4 0/0:0.0,-166.3,-300.0:17:99:585:6 0/0:0.0,-186.72,-300.0:21:99:631:11 0/0:0.0,-138.96,-300.0:16:99:451:5 0/0:0.0,-204.2,-300.0:21:99:721:2 0/0:0.0,-158.39,-300.0:17:99:556:4 0/0:0.0,-152.68,-300.0:16:99:517:5 0/0:0.0,-162.06,-300.0:19:99:556:1 0/0:0.0,-300.0,-300.0:20:99:1884:11 0/0:0.0,-161.37,-300.0:18:99:544:6 0/0:0.0,-284.91,-300.0:18:99:991:5 0/0:0.0,-168.08,-300.0:17:99:567:7 0/0:0.0,-265.53,-300.0:18:99:895:8 0/0:0.0,-130.53,-300.0:16:99:437:4 0/0:0.0,-140.17,-300.0:15:99:475:6 0/0:0.0,-202.67,-300.0:20:99:696:5 0/0:0.0,-267.53,-300.0:17:99:891:10 0/0:0.0,-52.26,-300.0:6:99:170:4 0/0:0.0,-67.61,-300.0:4:99:211:6 0/0:0.0,-55.57,-300.0:7:99:176:3 0/0:0.0,-74.23,-300.0:10:99:250:2 0/0:0.0,-59.18,-300.0:7:99:192:2 0/0:0.0,-60.97,-300.0:8:99:201:3 0/0:0.0,-28.38,-292.52:9:99:90:1 0/0:0.0,-51.4,-300.0:8:99:163:2 0/0:0.0,-58.28,-300.0:6:99:187:8 0/0:0.0,-69.12,-300.0:9:99:228:5 0/0:0.0,-63.4,-300.0:10:99:197:3 0/0:0.0,-71.52,-300.0:8:99:233:4 0/0:0.0,-42.32,-300.0:6:99:142:3 0/0:0.0,-42.63,-300.0:9:99:136:2 0/0:0.0,-48.35,-300.0:10:99:149:3 0/0:0.0,-59.48,-300.0:9:99:182:2 0/0:0.0,-58.86,-300.0:8:99:189:4 0/0:0.0,-166.54,-300.0:19:99:561:2 0/0:0.0,-123.0,-300.0:17:99:406:1 0/0:0.0,-179.22,-300.0:21:99:603:5 0/0:0.0,-263.76,-300.0:22:99:952:9 chrXII 315804 . TCCAAAGA T 297 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=10;HapScore=1;MGOF=29;MMLQ=12;MQ=59.96;NF=117;NR=107;PP=297;QD=1.36607142857;SC=TTTTTTTTTTTCCAAAGAGCA;SbPval=0.08;Source=Platypus;TC=19639;TCF=9577;TCR=10062;TR=224;WE=315822;WS=315780 GT:GL:GOF:GQ:NR:NV 0/1:-30.98,0.0,-300.0:28:99:358:7 0/0:0.0,-61.76,-300.0:1:99:196:3 0/0:0.0,-43.13,-300.0:1:99:141:5 0/0:0.0,-28.78,-300.0:1:99:89:1 0/0:0.0,-20.58,-300.0:29:99:358:5 0/0:0.0,-32.69,-300.0:2:99:100:1 0/0:0.0,-47.04,-300.0:2:99:147:3 0/0:0.0,-42.02,-300.0:1:99:131:5 0/0:0.0,-60.09,-300.0:5:99:186:4 0/0:0.0,-125.96,-300.0:15:99:410:6 0/0:0.0,-170.82,-300.0:18:99:563:7 0/0:0.0,-167.5,-300.0:16:99:540:4 0/0:0.0,-166.3,-300.0:17:99:538:6 0/0:0.0,-186.72,-300.0:20:99:595:12 0/0:0.0,-138.96,-300.0:16:99:456:5 0/0:0.0,-204.2,-300.0:21:99:655:2 0/0:0.0,-158.39,-300.0:17:99:530:4 0/0:0.0,-152.68,-300.0:16:99:501:5 0/0:0.0,-162.06,-300.0:19:99:529:1 0/0:0.0,-300.0,-300.0:20:99:1809:11 0/0:0.0,-161.37,-300.0:18:99:519:6 0/0:0.0,-284.91,-300.0:18:99:949:6 0/0:0.0,-168.08,-300.0:17:99:545:7 0/0:0.0,-265.74,-300.0:18:99:874:8 0/0:0.0,-130.53,-300.0:16:99:422:5 0/0:0.0,-140.17,-300.0:15:99:452:6 0/0:0.0,-202.67,-300.0:20:99:664:5 0/0:0.0,-267.53,-300.0:17:99:864:10 0/0:0.0,-52.26,-300.0:6:99:170:4 0/0:0.0,-67.61,-300.0:4:99:211:6 0/0:0.0,-55.57,-300.0:7:99:180:3 0/0:0.0,-74.23,-300.0:10:99:238:2 0/0:0.0,-59.18,-300.0:7:99:189:2 0/0:0.0,-60.97,-300.0:7:99:195:3 0/0:0.0,-28.38,-300.0:9:99:89:1 0/0:0.0,-51.4,-300.0:8:99:163:2 0/0:0.0,-58.28,-300.0:5:99:188:8 0/0:0.0,-69.12,-300.0:8:99:223:5 0/0:0.0,-63.4,-300.0:10:99:202:2 0/0:0.0,-71.52,-300.0:8:99:228:4 0/0:0.0,-42.32,-300.0:6:99:134:3 0/0:0.0,-42.63,-300.0:9:99:138:2 0/0:0.0,-48.35,-300.0:10:99:155:3 0/0:0.0,-59.48,-300.0:9:99:190:2 0/0:0.0,-58.86,-300.0:7:99:186:4 0/0:0.0,-166.54,-300.0:19:99:547:4 0/0:0.0,-123.0,-300.0:17:99:401:1 0/0:0.0,-179.27,-300.0:21:99:589:5 0/0:0.0,-267.9,-300.0:22:99:902:8 chrXII 320331 . G GA 219 badReads;QD;alleleBias BRF=0.03;FR=0.0102;HP=3;HapScore=1;MGOF=38;MMLQ=12;MQ=59.97;NF=135;NR=152;PP=219;QD=0.985525297809;SC=GACCCCTTCAGAATGAAAAAA;SbPval=0.76;Source=Platypus;TC=16981;TCF=7333;TCR=9648;TR=287;WE=320344;WS=320318 GT:GL:GOF:GQ:NR:NV 1/0:-28.74,0.0,-300.0:27:99:214:3 0/0:0.0,-48.7,-300.0:2:99:166:6 0/0:0.0,-40.61,-300.0:2:99:128:2 0/0:0.0,-23.65,-227.57:3:99:80:5 0/0:0.0,-15.97,-300.0:28:99:241:4 0/0:0.0,-23.82,-257.07:2:99:85:3 0/0:0.0,-37.85,-300.0:2:99:128:6 0/0:0.0,-23.68,-228.97:3:99:79:5 0/0:0.0,-27.45,-300.0:27:99:168:3 0/0:0.0,-93.29,-300.0:27:99:403:2 0/0:0.0,-104.67,-300.0:33:99:494:11 0/0:0.0,-90.04,-300.0:27:99:430:3 0/0:0.0,-100.46,-300.0:29:99:468:8 0/0:0.0,-129.35,-300.0:29:99:540:7 0/0:0.0,-92.29,-300.0:26:99:416:2 0/0:0.0,-139.2,-300.0:25:99:604:5 0/0:0.0,-96.18,-300.0:30:99:444:7 0/0:0.0,-93.97,-300.0:29:99:463:5 0/0:0.0,-115.71,-300.0:26:99:559:8 0/0:0.0,-300.0,-300.0:31:99:1550:20 0/0:0.0,-86.13,-300.0:26:99:409:6 0/0:0.0,-167.99,-300.0:27:99:827:11 0/0:0.0,-85.57,-300.0:34:99:461:5 0/0:0.0,-142.5,-300.0:31:99:658:9 0/0:0.0,-77.45,-300.0:29:99:392:5 0/0:0.0,-76.44,-300.0:30:99:391:12 0/0:0.0,-136.08,-300.0:30:99:611:7 0/0:0.0,-163.37,-300.0:29:99:693:14 0/0:0.0,-30.38,-300.0:27:99:163:3 0/0:0.0,-20.12,-300.0:22:99:139:4 0/0:0.0,-11.46,-300.0:27:99:125:6 0/0:0.0,-30.11,-300.0:22:99:168:3 0/0:0.0,-24.05,-300.0:23:99:137:2 0/0:0.0,-27.64,-300.0:24:99:144:3 0/0:0.0,-12.2,-210.17:26:99:83:1 0/0:0.0,-34.97,-300.0:24:99:174:3 0/0:0.0,-31.12,-300.0:27:99:179:8 0/0:0.0,-20.43,-300.0:23:99:170:3 0/0:0.0,-22.1,-300.0:26:99:159:7 0/0:0.0,-40.69,-300.0:25:99:190:6 0/0:0.0,-28.56,-300.0:37:99:134:7 0/0:0.0,-20.06,-296.47:23:99:126:1 0/0:0.0,-24.29,-300.0:24:99:133:2 0/0:0.0,-13.32,-300.0:25:99:180:4 0/0:0.0,-19.22,-300.0:35:99:170:6 0/0:0.0,-89.98,-300.0:29:99:446:6 0/0:0.0,-76.28,-300.0:34:99:384:9 0/0:0.0,-142.14,-300.0:35:99:608:7 0/0:0.0,-173.29,-300.0:38:99:867:12 chrXII 320333 . ATG A 233 badReads;QD;alleleBias BRF=0.03;FR=0.0102;HP=1;HapScore=1;MGOF=38;MMLQ=12;MQ=59.95;NF=136;NR=160;PP=233;QD=0.957027997419;SC=CCCCTTCAGAATGAAAAAAAA;SbPval=0.78;Source=Platypus;TC=16986;TCF=7352;TCR=9634;TR=296;WE=320344;WS=320318 GT:GL:GOF:GQ:NR:NV 1/0:-28.74,0.0,-300.0:27:99:210:3 0/0:0.0,-48.7,-300.0:2:99:166:6 0/0:0.0,-40.61,-300.0:2:99:133:2 0/0:0.0,-23.65,-219.68:3:99:82:5 0/0:0.0,-15.97,-300.0:28:99:241:4 0/0:0.0,-23.82,-235.17:2:99:85:3 0/0:0.0,-37.85,-300.0:2:99:128:6 0/0:0.0,-23.68,-218.86:3:99:81:5 0/0:0.0,-27.45,-300.0:27:99:164:3 0/0:0.0,-93.29,-300.0:27:99:393:2 0/0:0.0,-104.67,-300.0:33:99:500:11 0/0:0.0,-90.04,-300.0:27:99:424:3 0/0:0.0,-100.46,-300.0:29:99:464:8 0/0:0.0,-129.35,-300.0:30:99:534:8 0/0:0.0,-92.29,-300.0:26:99:415:2 0/0:0.0,-139.2,-300.0:26:99:604:7 0/0:0.0,-96.18,-300.0:30:99:448:7 0/0:0.0,-93.97,-300.0:29:99:466:5 0/0:0.0,-115.71,-300.0:26:99:558:8 0/0:0.0,-300.0,-300.0:31:99:1555:21 0/0:0.0,-86.13,-300.0:26:99:416:6 0/0:0.0,-167.99,-300.0:27:99:832:11 0/0:0.0,-85.57,-300.0:34:99:457:5 0/0:0.0,-142.5,-300.0:31:99:662:9 0/0:0.0,-77.45,-300.0:29:99:393:5 0/0:0.0,-76.44,-300.0:30:99:389:13 0/0:0.0,-136.08,-300.0:30:99:615:8 0/0:0.0,-163.37,-300.0:29:99:703:15 0/0:0.0,-30.38,-300.0:27:99:158:3 0/0:0.0,-20.12,-300.0:22:99:143:4 0/0:0.0,-11.46,-269.49:27:99:126:6 0/0:0.0,-30.11,-300.0:23:99:167:3 0/0:0.0,-24.05,-300.0:23:99:135:2 0/0:0.0,-27.64,-300.0:25:99:142:3 0/0:0.0,-12.2,-195.08:26:99:84:1 0/0:0.0,-34.97,-300.0:24:99:170:3 0/0:0.0,-31.12,-300.0:27:99:182:8 0/0:0.0,-20.43,-300.0:23:99:165:3 0/0:0.0,-22.1,-300.0:27:99:155:7 0/0:0.0,-40.69,-300.0:25:99:192:6 0/0:0.0,-28.56,-300.0:37:99:134:7 0/0:0.0,-20.06,-265.36:24:99:121:1 0/0:0.0,-24.29,-300.0:25:99:131:2 0/0:0.0,-13.32,-300.0:26:99:179:4 0/0:0.0,-19.22,-300.0:35:99:172:6 0/0:0.0,-89.98,-300.0:29:99:445:7 0/0:0.0,-76.28,-300.0:34:99:392:10 0/0:0.0,-142.14,-300.0:35:99:616:7 0/0:0.0,-173.29,-300.0:38:99:859:12 chrXII 320335 . G GA 278 badReads;QD;alleleBias BRF=0.03;FR=0.0102;HP=12;HapScore=1;MGOF=38;MMLQ=12;MQ=59.95;NF=132;NR=178;PP=278;QD=0.916129032258;SC=CCTTCAGAATGAAAAAAAAAA;SbPval=0.79;Source=Platypus;TC=18115;TCF=7575;TCR=10540;TR=310;WE=320344;WS=320318 GT:GL:GOF:GQ:NR:NV 1/0:-28.74,0.0,-247.98:27:99:227:3 0/0:0.0,-48.7,-218.1:2:99:175:6 0/0:0.0,-40.61,-197.5:2:99:139:2 0/0:0.0,-23.65,-120.76:3:99:77:4 0/0:0.0,-15.97,-300.0:28:99:260:4 0/0:0.0,-23.82,-147.67:2:99:89:1 0/0:0.0,-37.85,-182.6:2:99:131:5 0/0:0.0,-23.68,-129.1:3:99:85:4 0/0:0.0,-27.45,-215.26:27:99:162:3 0/0:0.0,-93.29,-300.0:27:99:413:1 0/0:0.0,-104.67,-300.0:33:99:537:11 0/0:0.0,-90.04,-300.0:27:99:447:3 0/0:0.0,-100.46,-300.0:29:99:495:9 0/0:0.0,-129.35,-300.0:29:99:583:9 0/0:0.0,-92.29,-300.0:26:99:432:2 0/0:0.0,-139.2,-300.0:25:99:663:7 0/0:0.0,-96.18,-300.0:30:99:478:8 0/0:0.0,-93.97,-300.0:29:99:494:6 0/0:0.0,-115.71,-300.0:26:99:598:10 0/0:0.0,-300.0,-300.0:31:99:1680:24 0/0:0.0,-86.13,-300.0:26:99:456:7 0/0:0.0,-167.42,-300.0:27:99:910:13 0/0:0.0,-85.57,-300.0:34:99:485:4 0/0:0.0,-142.5,-300.0:31:99:706:9 0/0:0.0,-77.45,-300.0:29:99:422:7 0/0:0.0,-76.44,-300.0:30:99:423:13 0/0:0.0,-136.08,-300.0:30:99:668:11 0/0:0.0,-163.37,-300.0:29:99:752:16 0/0:0.0,-30.38,-248.86:27:99:167:3 0/0:0.0,-20.12,-199.45:22:99:150:4 0/0:0.0,-11.46,-174.14:27:99:132:6 0/0:0.0,-30.11,-223.25:22:99:172:3 0/0:0.0,-24.05,-197.88:23:99:138:2 0/0:0.0,-27.64,-212.38:24:99:147:3 0/0:0.0,-12.2,-130.96:26:99:87:1 0/0:0.0,-34.97,-245.42:24:99:173:3 0/0:0.0,-31.12,-244.95:27:99:191:8 0/0:0.0,-20.43,-207.33:23:99:170:3 0/0:0.0,-22.1,-208.6:26:99:156:7 0/0:0.0,-40.69,-285.58:25:99:199:6 0/0:0.0,-28.56,-208.51:37:99:139:7 0/0:0.0,-20.06,-170.86:23:99:126:1 0/0:0.0,-24.29,-201.01:24:99:135:2 0/0:0.0,-13.32,-224.82:25:99:183:4 0/0:0.0,-19.22,-225.82:35:99:179:6 0/0:0.0,-89.98,-300.0:29:99:478:9 0/0:0.0,-76.28,-300.0:34:99:430:10 0/0:0.0,-142.14,-300.0:35:99:644:8 0/0:0.0,-173.29,-300.0:38:99:932:12 chrXII 343863 . GTTTTG TTTTTT 2590 strandBias;alleleBias BRF=0.02;FR=0.0204;HP=15;HapScore=1;MGOF=34;MMLQ=27;MQ=59.96;NF=297;NR=3;PP=2590;QD=20;SC=TTTTTTTTTTGTTTTGTCAAG;SbPval=0.0;Source=Platypus;TC=19305;TCF=9041;TCR=10264;TR=300;WE=343881;WS=343830 GT:GL:GOF:GQ:NR:NV 0/1:-119.77,0.0,-300.0:30:99:318:39 0/0:0.0,-68.83,-300.0:2:99:235:3 0/0:0.0,-42.84,-300.0:1:99:137:2 0/0:0.0,-24.25,-300.0:1:99:95:2 0/1:-145.47,0.0,-300.0:34:99:332:47 0/0:0.0,-27.47,-300.0:1:99:110:1 0/0:0.0,-35.09,-300.0:1:99:122:2 0/0:0.0,-34.59,-300.0:3:99:123:1 0/0:0.0,-48.94,-300.0:13:99:208:5 0/0:0.0,-116.1,-300.0:18:99:445:3 0/0:0.0,-133.07,-300.0:15:99:500:3 0/0:0.0,-116.04,-300.0:21:99:459:5 0/0:0.0,-143.2,-300.0:20:99:544:4 0/0:0.0,-156.12,-300.0:23:99:590:5 0/0:0.0,-120.25,-300.0:20:99:460:2 0/0:0.0,-175.12,-300.0:17:99:697:7 0/0:0.0,-137.04,-300.0:18:99:512:4 0/0:0.0,-139.02,-300.0:19:99:530:5 0/0:0.0,-127.69,-300.0:17:99:537:7 0/0:0.0,-300.0,-300.0:20:99:1738:19 0/0:0.0,-144.47,-300.0:17:99:507:1 0/0:0.0,-254.24,-300.0:16:99:1020:8 0/0:0.0,-138.57,-300.0:21:99:546:4 0/0:0.0,-199.33,-300.0:18:99:729:2 0/0:0.0,-112.53,-300.0:17:99:414:3 0/0:0.0,-109.1,-300.0:17:99:408:3 0/0:0.0,-163.71,-300.0:18:99:610:6 0/0:0.0,-223.57,-300.0:18:99:850:7 0/0:0.0,-36.34,-300.0:21:99:151:3 0/0:0.0,-30.8,-300.0:11:99:178:8 0/0:0.0,-30.04,-300.0:13:99:150:4 0/0:0.0,-64.68,-300.0:13:99:231:2 0/0:0.0,-27.19,-300.0:17:99:190:10 0/0:0.0,-40.52,-300.0:12:99:189:5 0/0:0.0,-12.29,-300.0:21:99:95:4 0/0:0.0,-30.3,-300.0:15:99:166:6 0/0:0.0,-50.31,-300.0:14:99:208:2 0/0:0.0,-39.69,-300.0:13:99:170:3 0/0:0.0,-44.96,-300.0:15:99:190:4 0/0:0.0,-51.31,-300.0:14:99:245:6 0/0:0.0,-25.04,-300.0:18:99:146:3 0/0:0.0,-31.23,-300.0:15:99:153:4 0/0:0.0,-30.04,-300.0:14:99:137:2 0/0:0.0,-25.65,-300.0:15:99:198:10 0/0:0.0,-44.03,-300.0:12:99:205:6 0/0:0.0,-144.08,-300.0:20:99:524:3 0/0:0.0,-121.51,-300.0:17:99:455:1 0/0:0.0,-138.98,-300.0:23:99:601:5 0/0:0.0,-238.96,-300.0:23:99:947:9 chrXII 348728 . ATCCCTTC A 155 badReads;QD;alleleBias BRF=0.02;FR=0.0112;HP=1;HapScore=1;MGOF=28;MMLQ=12;MQ=59.85;NF=140;NR=217;PP=155;QD=0.554621848739;SC=TGAAGTATTGATCCCTTCAAA;SbPval=0.03;Source=Platypus;TC=17755;TCF=8187;TCR=9568;TR=357;WE=348767;WS=348705 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-0.99,-300.0:20:10:296:4 0/0:0.0,-57.01,-300.0:1:99:178:9 0/0:0.0,-39.24,-300.0:1:99:128:6 0/0:0.0,-32.32,-300.0:1:99:97:1 1/0:-20.22,0.0,-300.0:22:99:275:9 0/0:0.0,-23.24,-300.0:2:99:77:3 0/0:0.0,-33.47,-300.0:2:99:106:3 0/0:0.0,-28.69,-300.0:2:99:87:3 0/0:0.0,-50.5,-300.0:17:99:160:6 0/0:0.0,-120.47,-300.0:21:99:417:5 0/0:0.0,-146.16,-300.0:21:99:558:13 0/0:0.0,-125.2,-300.0:25:99:415:5 0/0:0.0,-140.06,-300.0:22:99:535:8 0/0:0.0,-152.99,-300.0:24:99:561:6 0/0:0.0,-114.95,-300.0:23:99:460:7 0/0:0.0,-183.42,-300.0:24:99:716:12 0/0:0.0,-131.46,-300.0:23:99:460:7 0/0:0.0,-118.67,-300.0:26:99:454:12 0/0:0.0,-155.29,-300.0:20:99:576:10 0/0:0.0,-300.0,-300.0:25:99:1752:32 0/0:0.0,-126.23,-300.0:23:99:492:10 0/0:0.0,-228.09,-300.0:25:99:908:10 0/0:0.0,-126.91,-300.0:25:99:473:9 0/0:0.0,-176.36,-300.0:23:99:700:16 0/0:0.0,-129.81,-300.0:23:99:469:9 0/0:0.0,-114.2,-300.0:20:99:383:9 0/0:0.0,-180.13,-300.0:24:99:625:13 0/0:0.0,-225.09,-300.0:21:99:762:8 0/0:0.0,-31.28,-300.0:20:99:108:4 0/0:0.0,-59.15,-300.0:8:99:163:4 0/0:0.0,-44.97,-300.0:14:99:126:3 0/0:0.0,-49.63,-300.0:15:99:177:7 0/0:0.0,-45.04,-300.0:10:99:152:1 0/0:0.0,-45.97,-300.0:10:99:149:0 0/0:0.0,-31.35,-300.0:14:99:95:3 0/0:0.0,-52.27,-300.0:16:99:162:2 0/0:0.0,-51.0,-300.0:20:99:170:6 0/0:0.0,-44.47,-300.0:11:99:157:8 0/0:0.0,-39.47,-300.0:21:99:146:6 0/0:0.0,-54.02,-300.0:19:99:185:3 0/0:0.0,-35.17,-300.0:8:99:121:6 0/0:0.0,-33.81,-300.0:8:99:117:1 0/0:0.0,-37.13,-300.0:17:99:119:2 0/0:0.0,-49.28,-300.0:17:99:147:3 0/0:0.0,-48.38,-300.0:20:99:176:7 0/0:0.0,-129.71,-300.0:21:99:490:9 0/0:0.0,-97.77,-300.0:26:99:357:8 0/0:0.0,-135.06,-300.0:21:99:543:14 0/0:0.0,-223.55,-300.0:28:99:775:15 chrXII 348734 . TC T 202 badReads;QD;alleleBias BRF=0.02;FR=0.0602;HP=1;HapScore=1;MGOF=28;MMLQ=14;MQ=59.84;NF=140;NR=223;PP=202;QD=0.691545178705;SC=ATTGATCCCTTCAAAAAAAAA;SbPval=0.9;Source=Platypus;TC=17373;TCF=7943;TCR=9430;TR=363;WE=348767;WS=348705 GT:GL:GOF:GQ:NR:NV 1/0:-58.52,0.0,-300.0:21:99:277:4 0/0:0.0,-46.28,-300.0:1:99:173:10 0/0:0.0,-31.24,-300.0:1:99:125:7 0/0:0.0,-28.07,-300.0:1:99:97:1 1/0:-57.54,0.0,-280.53:23:99:268:9 0/0:0.0,-16.17,-212.68:2:99:71:3 0/0:0.0,-27.74,-300.0:2:99:103:3 0/0:0.0,-19.37,-221.78:2:99:76:3 1/0:-3.4,0.0,-264.57:17:34:148:6 0/0:0.0,-50.93,-300.0:21:99:407:5 0/0:0.0,-44.64,-300.0:21:99:542:13 0/0:0.0,-52.74,-300.0:25:99:410:6 0/0:0.0,-32.77,-300.0:22:99:520:8 0/0:0.0,-61.09,-300.0:24:99:548:6 0/0:0.0,-12.17,-300.0:23:99:459:7 0/0:0.0,-52.51,-300.0:24:99:710:12 0/0:0.0,-39.31,-300.0:23:99:458:7 0/0:0.0,-37.62,-300.0:26:99:448:12 0/0:0.0,-38.53,-300.0:20:99:564:10 0/0:0.0,-138.38,-300.0:25:99:1753:33 0/0:0.0,-69.75,-300.0:23:99:471:10 0/0:0.0,-70.04,-300.0:25:99:880:10 0/0:0.0,-43.03,-300.0:25:99:464:9 0/0:0.0,-78.07,-300.0:23:99:694:17 0/0:0.0,-38.04,-300.0:23:99:459:9 0/0:0.0,-24.88,-300.0:20:99:378:9 0/0:0.0,-70.06,-300.0:24:99:615:13 0/0:0.0,-85.06,-300.0:21:99:751:8 0/0:0.0,-8.05,-221.28:20:81:101:4 1/0:-8.57,0.0,-260.35:8:86:166:4 1/0:-6.83,0.0,-213.81:14:68:119:3 0/0:0.0,-7.01,-300.0:15:70:163:7 0/0:0.0,-9.05,-264.18:10:91:142:1 0/0:0.0,-11.69,-281.28:10:99:146:0 0/0:0.0,-18.38,-211.88:14:99:97:3 0/0:0.0,-20.44,-300.0:16:99:159:2 1/0:-1.31,0.0,-291.79:20:13:162:6 0/0:0.0,-17.93,-300.0:11:99:151:8 0/0:0.0,-3.78,-265.58:21:38:143:6 0/0:0.0,-2.8,-300.0:19:28:184:3 0/0:0.0,-1.4,-216.78:8:14:118:6 0/0:0.0,-6.11,-222.18:8:61:114:1 0/0:0.0,-8.41,-227.88:17:84:116:2 1/0:-6.57,0.0,-225.34:17:66:142:3 0/0:0.0,-4.73,-300.0:20:47:171:7 0/0:0.0,-57.58,-300.0:21:99:484:9 0/0:0.0,-43.34,-300.0:26:99:351:8 0/0:0.0,-56.05,-300.0:21:99:527:15 0/0:0.0,-93.71,-300.0:28:99:748:15 chrXII 348735 . C CAA,CA 251 badReads;QD;alleleBias BRF=0.02;FR=0.0112,0.0602;HP=15;HapScore=1;MGOF=28;MMLQ=12;MQ=59.84;NF=132,132;NR=225,225;PP=198,251;QD=0.563025210084;SC=TTGATCCCTTCAAAAAAAAAA;SbPval=0.02;Source=Platypus;TC=19428;TCF=8611;TCR=10817;TR=357,357;WE=348767;WS=348705 GT:GL:GOF:GQ:NR:NV 2/0:-1,-1,-1:20:10:317,317:4,4 0/0:-1,-1,-1:1:99:176,176:7,7 0/0:-1,-1,-1:1:99:134,134:6,6 0/0:-1,-1,-1:1:99:94,94:1,1 1/0:-1,-1,-1:22:99:302,302:9,9 0/0:-1,-1,-1:2:99:77,77:3,3 0/0:-1,-1,-1:2:99:115,115:3,3 0/0:-1,-1,-1:2:99:73,73:2,2 2/0:-1,-1,-1:17:34:167,167:5,5 0/0:-1,-1,-1:21:99:446,446:5,5 0/0:-1,-1,-1:21:99:597,597:13,13 0/0:-1,-1,-1:25:99:452,452:6,6 0/0:-1,-1,-1:22:99:580,580:8,8 0/0:-1,-1,-1:24:99:637,637:6,6 0/0:-1,-1,-1:23:99:495,495:7,7 0/0:-1,-1,-1:24:99:810,810:12,12 0/0:-1,-1,-1:23:99:527,527:7,7 0/0:-1,-1,-1:26:99:516,516:11,11 0/0:-1,-1,-1:20:99:645,645:9,9 0/0:-1,-1,-1:25:99:1955,1955:34,34 0/0:-1,-1,-1:23:99:546,546:10,10 0/0:-1,-1,-1:25:99:975,975:10,10 0/0:-1,-1,-1:25:99:528,528:9,9 0/0:-1,-1,-1:23:99:779,779:17,17 0/0:-1,-1,-1:23:99:519,519:9,9 0/0:-1,-1,-1:20:99:416,416:9,9 0/0:-1,-1,-1:24:99:684,684:13,13 0/0:-1,-1,-1:21:99:829,829:8,8 0/0:-1,-1,-1:20:81:105,105:4,4 2/0:-1,-1,-1:8:86:178,178:5,5 2/0:-1,-1,-1:14:68:135,135:3,3 0/0:-1,-1,-1:15:70:179,179:7,7 0/0:-1,-1,-1:10:91:154,154:1,1 0/0:-1,-1,-1:10:99:156,156:0,0 0/0:-1,-1,-1:14:99:112,112:3,3 0/0:-1,-1,-1:16:99:176,176:2,2 2/0:-1,-1,-1:20:13:172,172:6,6 0/0:-1,-1,-1:11:99:171,171:8,8 0/0:-1,-1,-1:21:38:164,164:6,6 0/0:-1,-1,-1:19:28:210,210:3,3 0/0:-1,-1,-1:8:14:134,134:6,6 0/0:-1,-1,-1:8:61:129,129:1,1 0/0:-1,-1,-1:17:84:121,121:2,2 2/0:-1,-1,-1:17:66:159,159:3,3 0/0:-1,-1,-1:20:47:189,189:7,7 0/0:-1,-1,-1:21:99:543,543:9,9 0/0:-1,-1,-1:26:99:402,402:8,8 0/0:-1,-1,-1:21:99:600,600:15,15 0/0:-1,-1,-1:28:99:848,848:15,15 chrXII 369387 . A AT 332 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=11;HapScore=1;MGOF=32;MMLQ=12;MQ=59.97;NF=113;NR=103;PP=332;QD=1.59259259259;SC=TACAAGGAGTATTTTTTTTTT;SbPval=0.05;Source=Platypus;TC=19521;TCF=10568;TCR=8953;TR=216;WE=369411;WS=369369 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-9.32,-300.0:30:93:386:2 0/0:0.0,-59.87,-300.0:2:99:202:4 0/0:0.0,-41.66,-274.51:1:99:138:3 0/0:0.0,-26.35,-178.91:1:99:96:1 0/1:-34.85,0.0,-300.0:32:99:396:4 0/0:0.0,-28.73,-194.7:3:99:94:6 0/0:0.0,-42.36,-280.8:2:99:145:0 0/0:0.0,-29.26,-210.62:2:99:102:2 0/0:0.0,-52.17,-300.0:9:99:206:4 0/0:0.0,-97.24,-300.0:22:99:371:5 0/0:0.0,-132.88,-300.0:23:99:509:9 0/0:0.0,-125.29,-300.0:23:99:442:6 0/0:0.0,-127.78,-300.0:20:99:515:5 0/0:0.0,-144.5,-300.0:25:99:548:4 0/0:0.0,-128.27,-300.0:17:99:464:4 0/0:0.0,-189.3,-300.0:24:99:717:9 0/0:0.0,-125.82,-300.0:20:99:494:4 0/0:0.0,-138.11,-300.0:21:99:536:10 0/0:0.0,-147.62,-300.0:18:99:572:6 0/0:0.0,-300.0,-300.0:23:99:1783:14 0/0:0.0,-129.38,-300.0:21:99:480:8 0/0:0.0,-229.14,-300.0:19:99:860:7 0/0:0.0,-126.4,-300.0:22:99:494:4 0/0:0.0,-187.84,-300.0:21:99:731:4 0/0:0.0,-119.81,-300.0:21:99:472:6 0/0:0.0,-118.67,-300.0:16:99:428:2 0/0:0.0,-183.07,-300.0:22:99:665:7 0/0:0.0,-225.61,-300.0:23:99:843:6 0/0:0.0,-42.61,-291.27:10:99:160:1 0/0:0.0,-47.5,-300.0:7:99:186:3 0/0:0.0,-41.46,-275.23:3:99:141:4 0/0:0.0,-56.5,-300.0:8:99:233:6 0/0:0.0,-47.65,-300.0:8:99:172:2 0/0:0.0,-42.59,-300.0:7:99:174:1 0/0:0.0,-18.08,-159.71:11:99:79:0 0/0:0.0,-46.47,-300.0:9:99:183:2 0/0:0.0,-41.04,-300.0:12:99:198:0 0/0:0.0,-47.32,-300.0:8:99:185:3 0/0:0.0,-46.48,-300.0:9:99:173:3 0/0:0.0,-63.61,-300.0:9:99:273:4 0/0:0.0,-37.76,-256.05:11:99:131:3 0/0:0.0,-31.41,-224.44:10:99:125:2 0/0:0.0,-33.7,-219.42:9:99:112:0 0/0:0.0,-58.48,-300.0:11:99:235:3 0/0:0.0,-47.05,-300.0:7:99:194:6 0/0:0.0,-131.29,-300.0:21:99:498:2 0/0:0.0,-138.2,-300.0:22:99:523:7 0/0:0.0,-186.55,-300.0:23:99:714:6 0/0:0.0,-292.48,-300.0:21:99:1143:12 chrXII 369397 . TG T 332 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=9;HapScore=1;MGOF=32;MMLQ=12;MQ=59.98;NF=107;NR=103;PP=332;QD=1.6380952381;SC=ATTTTTTTTTTGTTCTAGTGT;SbPval=0.06;Source=Platypus;TC=18616;TCF=10096;TCR=8520;TR=210;WE=369411;WS=369369 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-9.32,-300.0:30:93:360:2 0/0:0.0,-59.87,-300.0:2:99:200:4 0/0:0.0,-41.66,-300.0:1:99:135:3 0/0:0.0,-26.35,-270.37:1:99:86:1 0/1:-34.85,0.0,-300.0:32:99:371:4 0/0:0.0,-28.73,-296.37:3:99:89:6 0/0:0.0,-42.36,-300.0:2:99:138:0 0/0:0.0,-29.26,-300.0:2:99:95:2 0/0:0.0,-52.17,-300.0:9:99:196:4 0/0:0.0,-97.24,-300.0:22:99:362:4 0/0:0.0,-132.88,-300.0:23:99:481:8 0/0:0.0,-125.29,-300.0:23:99:428:5 0/0:0.0,-127.78,-300.0:20:99:492:4 0/0:0.0,-144.5,-300.0:25:99:524:3 0/0:0.0,-128.27,-300.0:17:99:445:4 0/0:0.0,-189.3,-300.0:24:99:685:9 0/0:0.0,-125.82,-300.0:20:99:475:4 0/0:0.0,-138.11,-300.0:21:99:511:10 0/0:0.0,-147.62,-300.0:18:99:558:6 0/0:0.0,-300.0,-300.0:23:99:1695:13 0/0:0.0,-129.38,-300.0:21:99:453:8 0/0:0.0,-229.14,-300.0:19:99:809:7 0/0:0.0,-126.4,-300.0:22:99:472:4 0/0:0.0,-187.84,-300.0:21:99:707:4 0/0:0.0,-119.81,-300.0:21:99:446:6 0/0:0.0,-118.67,-300.0:16:99:408:2 0/0:0.0,-183.07,-300.0:22:99:641:7 0/0:0.0,-225.61,-300.0:23:99:804:6 0/0:0.0,-42.61,-300.0:10:99:154:2 0/0:0.0,-47.5,-300.0:7:99:180:3 0/0:0.0,-41.46,-300.0:3:99:135:4 0/0:0.0,-56.5,-300.0:8:99:218:6 0/0:0.0,-47.65,-300.0:8:99:163:2 0/0:0.0,-42.59,-300.0:7:99:163:1 0/0:0.0,-18.08,-196.07:11:99:75:0 0/0:0.0,-46.47,-300.0:9:99:174:1 0/0:0.0,-41.04,-300.0:12:99:188:0 0/0:0.0,-47.32,-300.0:8:99:171:3 0/0:0.0,-46.48,-300.0:9:99:170:3 0/0:0.0,-63.61,-300.0:9:99:258:4 0/0:0.0,-37.76,-300.0:11:99:131:3 0/0:0.0,-31.41,-300.0:10:99:121:2 0/0:0.0,-33.7,-300.0:8:99:108:0 0/0:0.0,-58.48,-300.0:11:99:219:3 0/0:0.0,-47.05,-300.0:7:99:189:6 0/0:0.0,-131.29,-300.0:21:99:479:2 0/0:0.0,-138.2,-300.0:22:99:493:7 0/0:0.0,-186.55,-300.0:23:99:687:6 0/0:0.0,-292.48,-300.0:21:99:1074:12 chrXII 371363 . AG A 66 SC;badReads;QD;alleleBias BRF=0.03;FR=0.0102;HP=2;HapScore=1;MGOF=28;MMLQ=12;MQ=59.96;NF=100;NR=137;PP=66;QD=0.388185654008;SC=AAGGGAAGGAAGGAAAAAAAA;SbPval=1.0;Source=Platypus;TC=18721;TCF=7826;TCR=10895;TR=237;WE=371395;WS=371335 GT:GL:GOF:GQ:NR:NV 1/0:-9.66,0.0,-300.0:28:97:285:2 0/0:0.0,-53.19,-300.0:2:99:184:3 0/0:0.0,-44.76,-300.0:1:99:150:3 0/0:0.0,-28.18,-288.17:1:99:91:4 0/0:0.0,-16.76,-300.0:22:99:247:2 0/0:0.0,-32.49,-300.0:1:99:106:3 0/0:0.0,-33.86,-300.0:2:99:114:0 0/0:0.0,-29.82,-300.0:1:99:101:4 0/0:0.0,-50.78,-300.0:10:99:192:2 0/0:0.0,-98.28,-300.0:18:99:382:3 0/0:0.0,-123.84,-300.0:18:99:513:5 0/0:0.0,-117.97,-300.0:24:99:475:5 0/0:0.0,-120.73,-300.0:21:99:456:1 0/0:0.0,-133.67,-300.0:22:99:520:4 0/0:0.0,-109.42,-300.0:20:99:450:7 0/0:0.0,-149.91,-300.0:22:99:678:4 0/0:0.0,-125.63,-300.0:21:99:506:6 0/0:0.0,-108.53,-300.0:22:99:468:5 0/0:0.0,-126.46,-300.0:24:99:516:5 0/0:0.0,-300.0,-300.0:22:99:1678:16 0/0:0.0,-120.37,-300.0:23:99:479:5 0/0:0.0,-220.5,-300.0:21:99:911:11 0/0:0.0,-137.39,-300.0:21:99:511:7 0/0:0.0,-197.62,-300.0:21:99:753:12 0/0:0.0,-101.52,-300.0:23:99:453:4 0/0:0.0,-89.35,-300.0:23:99:396:5 0/0:0.0,-131.12,-300.0:22:99:588:4 0/0:0.0,-190.31,-300.0:21:99:748:9 0/0:0.0,-43.01,-300.0:13:99:142:2 0/0:0.0,-65.68,-300.0:13:99:224:5 0/0:0.0,-43.91,-300.0:14:99:146:5 0/0:0.0,-53.38,-300.0:13:99:189:4 0/0:0.0,-50.22,-300.0:10:99:185:5 0/0:0.0,-39.86,-300.0:14:99:156:6 0/0:0.0,-30.69,-300.0:13:99:130:7 0/0:0.0,-43.46,-300.0:12:99:171:7 0/0:0.0,-56.87,-300.0:12:99:210:7 0/0:0.0,-41.56,-300.0:12:99:171:5 0/0:0.0,-48.98,-300.0:14:99:177:1 0/0:0.0,-62.89,-300.0:13:99:241:4 0/0:0.0,-37.48,-300.0:10:99:131:0 0/0:0.0,-47.78,-300.0:14:99:160:4 0/0:0.0,-40.67,-300.0:13:99:142:2 0/0:0.0,-62.09,-300.0:14:99:227:3 0/0:0.0,-57.82,-300.0:11:99:207:3 0/0:0.0,-128.18,-300.0:22:99:497:3 0/0:0.0,-121.37,-300.0:22:99:482:5 0/0:0.0,-192.69,-300.0:21:99:730:6 0/0:0.0,-259.12,-300.0:20:99:1052:12 chrXII 371365 . G GA 84 SC;badReads;QD;alleleBias BRF=0.03;FR=0.0102;HP=11;HapScore=1;MGOF=28;MMLQ=12;MQ=59.95;NF=99;NR=139;PP=84;QD=0.390756302521;SC=GGGAAGGAAGGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=20050;TCF=8420;TCR=11630;TR=238;WE=371395;WS=371335 GT:GL:GOF:GQ:NR:NV 1/0:-9.66,0.0,-300.0:28:97:311:2 0/0:0.0,-53.19,-300.0:2:99:190:3 0/0:0.0,-44.76,-272.64:1:99:161:3 0/0:0.0,-28.18,-178.5:1:99:93:3 0/0:0.0,-16.76,-300.0:22:99:274:2 0/0:0.0,-32.49,-203.17:1:99:115:3 0/0:0.0,-33.86,-207.96:2:99:123:0 0/0:0.0,-29.82,-197.79:1:99:113:4 0/0:0.0,-50.78,-300.0:10:99:196:2 0/0:0.0,-98.28,-300.0:18:99:417:3 0/0:0.0,-123.84,-300.0:18:99:563:5 0/0:0.0,-117.97,-300.0:24:99:496:5 0/0:0.0,-120.73,-300.0:21:99:505:2 0/0:0.0,-133.67,-300.0:22:99:557:4 0/0:0.0,-109.42,-300.0:20:99:471:7 0/0:0.0,-149.91,-300.0:22:99:733:4 0/0:0.0,-125.63,-300.0:21:99:531:6 0/0:0.0,-108.53,-300.0:22:99:500:5 0/0:0.0,-126.46,-300.0:24:99:547:7 0/0:0.0,-300.0,-300.0:22:99:1803:16 0/0:0.0,-120.37,-300.0:23:99:508:5 0/0:0.0,-220.5,-300.0:21:99:977:11 0/0:0.0,-137.39,-300.0:21:99:546:7 0/0:0.0,-197.62,-300.0:21:99:807:12 0/0:0.0,-101.52,-300.0:23:99:491:4 0/0:0.0,-89.35,-300.0:23:99:424:5 0/0:0.0,-131.12,-300.0:22:99:615:4 0/0:0.0,-190.31,-300.0:21:99:821:9 0/0:0.0,-43.01,-264.1:13:99:153:2 0/0:0.0,-65.68,-300.0:13:99:232:6 0/0:0.0,-43.91,-264.11:14:99:157:5 0/0:0.0,-53.38,-300.0:13:99:203:3 0/0:0.0,-50.22,-300.0:10:99:186:5 0/0:0.0,-39.86,-265.7:14:99:175:6 0/0:0.0,-30.69,-210.62:13:99:133:7 0/0:0.0,-43.46,-289.21:12:99:184:7 0/0:0.0,-56.87,-300.0:12:99:230:7 0/0:0.0,-41.56,-287.33:12:99:185:5 0/0:0.0,-48.98,-300.0:14:99:181:1 0/0:0.0,-62.89,-300.0:13:99:259:3 0/0:0.0,-37.48,-247.67:10:99:141:0 0/0:0.0,-47.78,-279.78:14:99:164:4 0/0:0.0,-40.67,-255.29:13:99:148:2 0/0:0.0,-62.09,-300.0:14:99:235:3 0/0:0.0,-57.82,-300.0:11:99:227:3 0/0:0.0,-128.18,-300.0:22:99:526:3 0/0:0.0,-121.37,-300.0:22:99:520:5 0/0:0.0,-192.69,-300.0:21:99:785:6 0/0:0.0,-259.12,-300.0:20:99:1138:12 chrXII 373028 . AG A 856 QD;alleleBias BRF=0.02;FR=0.0204;HP=3;HapScore=1;MGOF=35;MMLQ=32;MQ=59.97;NF=178;NR=126;PP=856;QD=2.97707532852;SC=AGTTGTATAGAGGAAACAAAA;SbPval=1.0;Source=Platypus;TC=19686;TCF=10465;TCR=9221;TR=304;WE=373063;WS=373007 GT:GL:GOF:GQ:NR:NV 1/0:-78.63,0.0,-300.0:35:99:367:2 0/0:0.0,-63.48,-300.0:2:99:208:7 0/0:0.0,-39.34,-300.0:1:99:143:3 0/0:0.0,-25.55,-300.0:1:99:85:5 1/0:-12.78,0.0,-300.0:30:99:319:0 0/0:0.0,-28.74,-300.0:2:99:85:1 0/0:0.0,-41.48,-300.0:1:99:133:2 0/0:0.0,-36.0,-300.0:2:99:107:3 0/0:0.0,-55.16,-300.0:14:99:200:7 0/0:0.0,-117.34,-300.0:20:99:413:6 0/0:0.0,-128.69,-300.0:22:99:511:7 0/0:0.0,-129.37,-300.0:20:99:474:4 0/0:0.0,-140.37,-300.0:21:99:541:8 0/0:0.0,-148.32,-300.0:24:99:576:10 0/0:0.0,-130.9,-300.0:25:99:474:11 0/0:0.0,-171.05,-300.0:20:99:728:11 0/0:0.0,-132.62,-300.0:21:99:483:9 0/0:0.0,-146.77,-300.0:21:99:502:3 0/0:0.0,-146.36,-300.0:20:99:544:15 0/0:0.0,-300.0,-300.0:22:99:1795:20 0/0:0.0,-136.47,-300.0:21:99:520:9 0/0:0.0,-228.48,-300.0:25:99:854:7 0/0:0.0,-153.1,-300.0:21:99:535:9 0/0:0.0,-193.44,-300.0:20:99:732:13 0/0:0.0,-107.26,-300.0:24:99:423:5 0/0:0.0,-107.1,-300.0:19:99:433:6 0/0:0.0,-177.29,-300.0:23:99:673:6 0/0:0.0,-233.28,-300.0:21:99:828:15 0/0:0.0,-41.11,-300.0:13:99:133:4 0/0:0.0,-56.91,-300.0:13:99:207:7 0/0:0.0,-47.5,-300.0:12:99:173:6 0/0:0.0,-52.49,-300.0:13:99:200:7 0/0:0.0,-56.29,-300.0:10:99:200:4 0/0:0.0,-49.78,-300.0:17:99:170:6 0/0:0.0,-33.46,-300.0:11:99:112:1 0/0:0.0,-59.81,-300.0:13:99:207:6 0/0:0.0,-62.98,-300.0:16:99:224:6 0/0:0.0,-60.91,-300.0:10:99:214:2 0/0:0.0,-68.14,-300.0:11:99:220:5 0/0:0.0,-74.99,-300.0:9:99:256:3 0/0:0.0,-37.64,-300.0:9:99:130:2 0/0:0.0,-39.68,-300.0:14:99:155:3 0/0:0.0,-42.57,-300.0:13:99:169:4 0/0:0.0,-50.96,-300.0:10:99:178:3 0/0:0.0,-58.97,-300.0:10:99:198:4 0/0:0.0,-131.65,-300.0:26:99:456:5 0/0:0.0,-138.85,-300.0:21:99:512:4 0/0:0.0,-201.35,-300.0:22:99:796:13 0/0:0.0,-293.02,-300.0:21:99:1090:5 chrXII 373030 . G GA 841 QD;alleleBias BRF=0.02;FR=0.0204;HP=3;HapScore=1;MGOF=35;MMLQ=32;MQ=59.96;NF=180;NR=126;PP=841;QD=2.95701228912;SC=TTGTATAGAGGAAACAAAAAA;SbPval=1.0;Source=Platypus;TC=19816;TCF=10531;TCR=9285;TR=306;WE=373063;WS=373007 GT:GL:GOF:GQ:NR:NV 1/0:-78.63,0.0,-300.0:35:99:365:2 0/0:0.0,-63.48,-300.0:2:99:209:7 0/0:0.0,-39.34,-300.0:1:99:147:3 0/0:0.0,-25.55,-294.32:1:99:85:5 1/0:-12.78,0.0,-300.0:30:99:317:0 0/0:0.0,-28.74,-300.0:2:99:87:1 0/0:0.0,-41.48,-300.0:1:99:132:2 0/0:0.0,-36.0,-300.0:2:99:112:3 0/0:0.0,-55.16,-300.0:14:99:198:7 0/0:0.0,-117.34,-300.0:20:99:415:6 0/0:0.0,-128.69,-300.0:22:99:511:7 0/0:0.0,-129.37,-300.0:20:99:472:4 0/0:0.0,-140.37,-300.0:21:99:541:8 0/0:0.0,-148.32,-300.0:24:99:583:9 0/0:0.0,-130.9,-300.0:25:99:475:11 0/0:0.0,-171.05,-300.0:20:99:727:11 0/0:0.0,-132.62,-300.0:21:99:485:10 0/0:0.0,-146.77,-300.0:21:99:503:3 0/0:0.0,-146.36,-300.0:20:99:552:15 0/0:0.0,-300.0,-300.0:22:99:1799:20 0/0:0.0,-136.47,-300.0:21:99:525:9 0/0:0.0,-228.48,-300.0:25:99:858:7 0/0:0.0,-153.1,-300.0:21:99:543:9 0/0:0.0,-193.44,-300.0:20:99:737:13 0/0:0.0,-107.26,-300.0:24:99:423:6 0/0:0.0,-107.1,-300.0:19:99:435:6 0/0:0.0,-177.29,-300.0:23:99:678:6 0/0:0.0,-233.28,-300.0:21:99:830:15 0/0:0.0,-41.11,-300.0:13:99:138:5 0/0:0.0,-56.91,-300.0:13:99:208:7 0/0:0.0,-47.5,-300.0:12:99:172:6 0/0:0.0,-52.49,-300.0:13:99:200:7 0/0:0.0,-56.29,-300.0:10:99:199:4 0/0:0.0,-49.78,-300.0:17:99:174:6 0/0:0.0,-33.46,-300.0:11:99:114:1 0/0:0.0,-59.81,-300.0:13:99:210:6 0/0:0.0,-62.98,-300.0:16:99:226:6 0/0:0.0,-60.91,-300.0:10:99:220:2 0/0:0.0,-68.14,-300.0:11:99:223:5 0/0:0.0,-74.99,-300.0:9:99:264:3 0/0:0.0,-37.64,-300.0:9:99:129:2 0/0:0.0,-39.68,-300.0:14:99:157:3 0/0:0.0,-42.57,-300.0:13:99:172:4 0/0:0.0,-50.96,-300.0:10:99:190:3 0/0:0.0,-58.97,-300.0:10:99:201:4 0/0:0.0,-131.65,-300.0:26:99:468:5 0/0:0.0,-138.85,-300.0:21:99:511:4 0/0:0.0,-201.35,-300.0:22:99:797:13 0/0:0.0,-293.02,-300.0:21:99:1099:5 chrXII 373033 . AC A 856 QD;alleleBias BRF=0.02;FR=0.0204;HP=2;HapScore=1;MGOF=35;MMLQ=32;MQ=59.96;NF=179;NR=133;PP=856;QD=2.90074006369;SC=TATAGAGGAAACAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=19668;TCF=10517;TCR=9151;TR=312;WE=373063;WS=373007 GT:GL:GOF:GQ:NR:NV 1/0:-78.63,0.0,-300.0:35:99:367:2 0/0:0.0,-63.48,-300.0:2:99:206:7 0/0:0.0,-39.34,-300.0:1:99:150:3 0/0:0.0,-25.55,-215.12:1:99:85:6 1/0:-12.78,0.0,-300.0:30:99:316:0 0/0:0.0,-28.74,-232.76:2:99:90:1 0/0:0.0,-41.48,-300.0:1:99:140:3 0/0:0.0,-36.0,-278.47:2:99:114:3 0/0:0.0,-55.16,-300.0:14:99:196:7 0/0:0.0,-117.34,-300.0:20:99:410:6 0/0:0.0,-128.69,-300.0:22:99:516:7 0/0:0.0,-129.37,-300.0:20:99:475:4 0/0:0.0,-140.37,-300.0:21:99:546:9 0/0:0.0,-147.35,-300.0:24:99:581:9 0/0:0.0,-130.9,-300.0:25:99:465:11 0/0:0.0,-171.05,-300.0:20:99:716:11 0/0:0.0,-132.62,-300.0:21:99:480:10 0/0:0.0,-146.77,-300.0:21:99:503:3 0/0:0.0,-146.36,-300.0:20:99:558:15 0/0:0.0,-300.0,-300.0:22:99:1790:20 0/0:0.0,-136.47,-300.0:21:99:528:10 0/0:0.0,-211.28,-300.0:25:99:848:7 0/0:0.0,-153.1,-300.0:21:99:533:9 0/0:0.0,-193.44,-300.0:20:99:738:13 0/0:0.0,-107.26,-300.0:24:99:431:6 0/0:0.0,-107.1,-300.0:19:99:427:6 0/0:0.0,-177.29,-300.0:23:99:674:8 0/0:0.0,-224.35,-300.0:21:99:830:15 0/0:0.0,-41.11,-300.0:13:99:136:5 0/0:0.0,-56.91,-300.0:13:99:201:7 0/0:0.0,-47.5,-300.0:12:99:167:6 0/0:0.0,-52.49,-300.0:13:99:198:7 0/0:0.0,-56.29,-300.0:10:99:187:4 0/0:0.0,-49.78,-300.0:17:99:169:6 0/0:0.0,-33.46,-265.37:11:99:113:1 0/0:0.0,-59.81,-300.0:13:99:205:6 0/0:0.0,-62.98,-300.0:16:99:218:6 0/0:0.0,-60.91,-300.0:10:99:209:2 0/0:0.0,-68.14,-300.0:11:99:222:5 0/0:0.0,-74.99,-300.0:9:99:253:3 0/0:0.0,-37.64,-287.98:9:99:122:2 0/0:0.0,-39.68,-300.0:14:99:156:3 0/0:0.0,-42.57,-300.0:13:99:168:4 0/0:0.0,-50.96,-300.0:10:99:188:3 0/0:0.0,-58.97,-300.0:10:99:197:4 0/0:0.0,-131.65,-300.0:26:99:466:5 0/0:0.0,-138.85,-300.0:21:99:506:4 0/0:0.0,-197.55,-300.0:22:99:791:13 0/0:0.0,-282.26,-300.0:21:99:1083:5 chrXII 373034 . C CA 897 QD;alleleBias BRF=0.02;FR=0.0204;HP=14;HapScore=1;MGOF=35;MMLQ=32;MQ=59.95;NF=175;NR=133;PP=897;QD=2.94155844156;SC=ATAGAGGAAACAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=20875;TCF=11205;TCR=9670;TR=308;WE=373063;WS=373007 GT:GL:GOF:GQ:NR:NV 1/0:-78.63,0.0,-300.0:35:99:396:4 0/0:0.0,-63.48,-300.0:2:99:226:6 0/0:0.0,-39.34,-260.87:1:99:156:3 0/0:0.0,-25.55,-167.32:1:99:94:5 1/0:-12.78,0.0,-300.0:30:99:340:0 0/0:0.0,-28.74,-175.29:2:99:87:1 0/0:0.0,-41.48,-245.43:1:99:147:3 0/0:0.0,-36.0,-211.91:2:99:125:3 0/0:0.0,-55.16,-300.0:14:99:207:7 0/0:0.0,-117.34,-300.0:20:99:432:6 0/0:0.0,-128.69,-300.0:22:99:551:7 0/0:0.0,-129.37,-300.0:20:99:505:4 0/0:0.0,-140.37,-300.0:21:99:598:8 0/0:0.0,-147.35,-300.0:24:99:619:9 0/0:0.0,-130.9,-300.0:25:99:484:11 0/0:0.0,-171.05,-300.0:20:99:765:11 0/0:0.0,-132.62,-300.0:21:99:515:10 0/0:0.0,-146.77,-300.0:21:99:539:3 0/0:0.0,-146.36,-300.0:20:99:595:15 0/0:0.0,-300.0,-300.0:22:99:1929:20 0/0:0.0,-136.47,-300.0:21:99:556:10 0/0:0.0,-211.28,-300.0:25:99:893:6 0/0:0.0,-153.1,-300.0:21:99:561:9 0/0:0.0,-193.44,-300.0:20:99:776:13 0/0:0.0,-107.26,-300.0:24:99:449:5 0/0:0.0,-107.1,-300.0:19:99:448:6 0/0:0.0,-177.29,-300.0:23:99:728:8 0/0:0.0,-224.35,-300.0:21:99:882:15 0/0:0.0,-41.11,-264.11:13:99:142:5 0/0:0.0,-56.91,-300.0:13:99:208:7 0/0:0.0,-47.5,-300.0:12:99:168:6 0/0:0.0,-52.49,-300.0:13:99:209:7 0/0:0.0,-56.29,-300.0:10:99:191:4 0/0:0.0,-49.78,-300.0:17:99:177:6 0/0:0.0,-33.46,-210.93:11:99:124:1 0/0:0.0,-59.81,-300.0:13:99:217:6 0/0:0.0,-62.98,-300.0:16:99:222:5 0/0:0.0,-60.91,-300.0:10:99:213:2 0/0:0.0,-68.14,-300.0:11:99:232:5 0/0:0.0,-74.99,-300.0:9:99:263:3 0/0:0.0,-37.64,-235.63:9:99:137:2 0/0:0.0,-39.68,-276.02:14:99:159:3 0/0:0.0,-42.57,-290.93:13:99:175:4 0/0:0.0,-50.96,-300.0:10:99:202:3 0/0:0.0,-58.97,-300.0:10:99:199:4 0/0:0.0,-131.65,-300.0:26:99:500:5 0/0:0.0,-138.85,-300.0:21:99:542:4 0/0:0.0,-197.55,-300.0:22:99:837:13 0/0:0.0,-282.26,-300.0:21:99:1155:5 chrXII 378351 . G GATATTGAGATATCTTTTGATC 295 alleleBias BRF=0.02;FR=0.0102;HP=3;HapScore=1;MGOF=14;MMLQ=32;MQ=59.98;NF=3;NR=10;PP=295;QD=24.6923076923;SC=CGATCTTGAAGATATTGAGAT;SbPval=1.0;Source=Platypus;TC=20062;TCF=9569;TCR=10493;TR=13;WE=378359;WS=378338 GT:GL:GOF:GQ:NR:NV 1/0:-32.55,0.0,-300.0:10:99:434:2 0/0:0.0,-46.54,-300.0:1:99:236:0 0/0:0.0,-37.51,-300.0:1:99:179:0 0/0:0.0,-18.54,-300.0:1:99:86:0 0/0:0.0,-94.68,-300.0:7:99:383:0 0/0:0.0,-22.76,-300.0:1:99:113:0 0/0:0.0,-36.0,-300.0:0:99:149:0 0/0:0.0,-29.68,-300.0:1:99:129:0 0/0:0.0,-42.93,-300.0:2:99:196:0 0/0:0.0,-96.48,-300.0:11:99:426:0 0/0:0.0,-131.35,-300.0:13:99:594:1 0/0:0.0,-117.58,-300.0:9:99:498:1 0/0:0.0,-115.78,-300.0:12:99:519:1 0/0:0.0,-138.6,-300.0:13:99:629:0 0/0:0.0,-119.99,-300.0:11:99:494:0 0/0:0.0,-185.26,-300.0:11:99:786:0 0/0:0.0,-118.18,-300.0:12:99:529:0 0/0:0.0,-129.9,-300.0:11:99:563:1 0/0:0.0,-129.57,-300.0:11:99:576:0 0/0:0.0,-300.0,-300.0:13:99:1958:2 0/0:0.0,-115.78,-300.0:14:99:504:0 0/0:0.0,-233.75,-300.0:11:99:1012:1 0/0:0.0,-128.99,-300.0:13:99:558:0 0/0:0.0,-171.77,-300.0:12:99:726:0 0/0:0.0,-118.16,-300.0:13:99:496:0 0/0:0.0,-91.97,-300.0:10:99:398:0 0/0:0.0,-160.33,-300.0:13:99:683:0 0/0:0.0,-185.59,-300.0:11:99:820:0 0/0:0.0,-37.81,-300.0:3:99:168:0 0/0:0.0,-45.34,-300.0:2:99:192:0 0/0:0.0,-36.91,-300.0:1:99:155:0 0/0:0.0,-50.75,-300.0:2:99:212:0 0/0:0.0,-40.22,-300.0:2:99:167:0 0/0:0.0,-42.63,-300.0:1:99:199:0 0/0:0.0,-26.07,-300.0:1:99:126:1 0/0:0.0,-35.7,-300.0:2:99:160:0 0/0:0.0,-38.41,-300.0:0:99:171:0 0/0:0.0,-39.01,-300.0:2:99:187:1 0/0:0.0,-35.7,-300.0:4:99:176:1 0/0:0.0,-42.02,-300.0:3:99:193:1 0/0:0.0,-25.47,-300.0:2:99:116:0 0/0:0.0,-33.29,-300.0:1:99:143:0 0/0:0.0,-30.89,-300.0:1:99:133:0 0/0:0.0,-53.46,-300.0:2:99:225:0 0/0:0.0,-53.76,-300.0:3:99:219:0 0/0:0.0,-123.28,-300.0:12:99:536:0 0/0:0.0,-94.98,-300.0:12:99:402:0 0/0:0.0,-142.84,-300.0:11:99:613:0 0/0:0.0,-201.52,-300.0:13:99:895:0 chrXII 392810 . G GT 102 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=9;HapScore=1;MGOF=32;MMLQ=12;MQ=59.97;NF=107;NR=95;PP=102;QD=0.574257425743;SC=CTGCTTTACCGTTTTTTTTTG;SbPval=0.86;Source=Platypus;TC=19829;TCF=10321;TCR=9508;TR=202;WE=392830;WS=392793 GT:GL:GOF:GQ:NR:NV 0/1:-3.09,0.0,-300.0:32:31:414:2 0/0:0.0,-52.09,-300.0:1:99:214:0 0/0:0.0,-36.11,-297.87:1:99:148:0 0/0:0.0,-23.18,-183.65:2:99:90:2 0/1:-9.35,0.0,-300.0:30:93:341:4 0/0:0.0,-25.16,-192.41:1:99:98:0 0/0:0.0,-40.78,-300.0:2:99:152:2 0/0:0.0,-26.94,-205.67:2:99:102:0 0/0:0.0,-51.27,-300.0:5:99:179:2 0/0:0.0,-129.58,-300.0:19:99:459:10 0/0:0.0,-140.44,-300.0:17:99:551:5 0/0:0.0,-149.09,-300.0:17:99:537:5 0/0:0.0,-140.08,-300.0:22:99:554:4 0/0:0.0,-177.98,-300.0:21:99:651:6 0/0:0.0,-132.97,-300.0:18:99:472:4 0/0:0.0,-223.11,-300.0:19:99:801:9 0/0:0.0,-136.07,-300.0:22:99:505:9 0/0:0.0,-141.83,-300.0:19:99:506:10 0/0:0.0,-163.26,-300.0:18:99:589:2 0/0:0.0,-300.0,-300.0:20:99:1917:22 0/0:0.0,-147.24,-300.0:19:99:540:2 0/0:0.0,-254.3,-300.0:24:99:941:6 0/0:0.0,-143.03,-300.0:18:99:503:5 0/0:0.0,-209.92,-300.0:17:99:751:11 0/0:0.0,-144.69,-300.0:19:99:529:6 0/0:0.0,-120.7,-300.0:21:99:450:5 0/0:0.0,-204.74,-300.0:19:99:740:13 0/0:0.0,-242.15,-300.0:19:99:880:14 0/0:0.0,-46.71,-300.0:4:99:156:0 0/0:0.0,-50.93,-300.0:5:99:167:0 0/0:0.0,-44.67,-300.0:7:99:155:0 0/0:0.0,-55.85,-300.0:4:99:188:0 0/0:0.0,-51.45,-300.0:3:99:184:3 0/0:0.0,-47.27,-300.0:3:99:166:1 0/0:0.0,-29.53,-204.23:4:99:95:3 0/0:0.0,-47.44,-300.0:2:99:158:0 0/0:0.0,-57.55,-300.0:5:99:193:1 0/0:0.0,-50.52,-300.0:4:99:177:1 0/0:0.0,-47.87,-300.0:5:99:165:2 0/0:0.0,-58.43,-300.0:5:99:206:4 0/0:0.0,-36.95,-261.33:6:99:128:0 0/0:0.0,-40.38,-284.87:3:99:134:1 0/0:0.0,-37.2,-277.92:2:99:124:1 0/0:0.0,-54.19,-300.0:3:99:183:1 0/0:0.0,-54.19,-300.0:4:99:193:2 0/0:0.0,-138.69,-300.0:24:99:491:2 0/0:0.0,-121.76,-300.0:22:99:434:6 0/0:0.0,-185.28,-300.0:19:99:640:8 0/0:0.0,-245.24,-300.0:19:99:878:6 chrXII 392819 . TGC T 13 Q20;QD;alleleBias BRF=0.02;FR=0.0104;HP=8;HapScore=1;MGOF=32;MMLQ=32;MQ=59.97;NF=104;NR=94;PP=13;QD=0.136363636364;SC=CGTTTTTTTTTGCCTTCTTTA;SbPval=0.26;Source=Platypus;TC=18938;TCF=9670;TCR=9268;TR=198;WE=392830;WS=392793 GT:GL:GOF:GQ:NR:NV 0/1:-3.09,0.0,-300.0:32:31:377:2 0/0:0.0,-52.31,-300.0:1:99:173:0 0/0:0.0,-36.41,-300.0:1:99:129:0 0/0:0.0,-23.27,-300.0:2:99:80:1 0/1:-7.65,0.0,-300.0:31:76:313:4 0/0:0.0,-25.45,-300.0:1:99:80:0 0/0:0.0,-41.05,-300.0:2:99:130:1 0/0:0.0,-27.05,-300.0:2:99:86:0 0/0:0.0,-51.27,-300.0:5:99:171:2 0/0:0.0,-129.58,-300.0:19:99:442:10 0/0:0.0,-140.44,-300.0:17:99:521:5 0/0:0.0,-149.09,-300.0:17:99:516:5 0/0:0.0,-140.08,-300.0:22:99:530:4 0/0:0.0,-177.98,-300.0:21:99:614:5 0/0:0.0,-132.97,-300.0:18:99:439:4 0/0:0.0,-223.11,-300.0:19:99:784:9 0/0:0.0,-136.07,-300.0:22:99:498:9 0/0:0.0,-141.83,-300.0:19:99:486:10 0/0:0.0,-163.26,-300.0:18:99:565:2 0/0:0.0,-300.0,-300.0:20:99:1841:23 0/0:0.0,-147.24,-300.0:19:99:523:2 0/0:0.0,-254.3,-300.0:24:99:900:6 0/0:0.0,-143.03,-300.0:18:99:491:5 0/0:0.0,-209.92,-300.0:17:99:726:11 0/0:0.0,-144.69,-300.0:19:99:508:5 0/0:0.0,-124.24,-300.0:21:99:427:5 0/0:0.0,-204.74,-300.0:19:99:710:13 0/0:0.0,-242.15,-300.0:19:99:850:14 0/0:0.0,-46.82,-300.0:4:99:155:0 0/0:0.0,-51.13,-300.0:5:99:165:0 0/0:0.0,-44.67,-300.0:7:99:150:0 0/0:0.0,-56.14,-300.0:4:99:179:0 0/0:0.0,-53.0,-300.0:3:99:171:3 0/0:0.0,-47.27,-300.0:3:99:159:1 0/0:0.0,-29.74,-300.0:4:99:96:3 0/0:0.0,-47.73,-300.0:2:99:153:0 0/0:0.0,-57.75,-300.0:5:99:187:1 0/0:0.0,-50.52,-300.0:4:99:171:1 0/0:0.0,-47.99,-300.0:5:99:159:2 0/0:0.0,-58.54,-300.0:5:99:196:4 0/0:0.0,-37.01,-300.0:6:99:120:0 0/0:0.0,-40.67,-300.0:3:99:132:1 0/0:0.0,-37.5,-300.0:2:99:118:1 0/0:0.0,-54.36,-300.0:3:99:175:1 0/0:0.0,-54.29,-300.0:4:99:187:2 0/0:0.0,-138.71,-300.0:24:99:470:2 0/0:0.0,-121.78,-300.0:22:99:414:6 0/0:0.0,-185.28,-300.0:19:99:618:8 0/0:0.0,-245.24,-300.0:19:99:853:5 chrXII 392822 . C CT 83 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=2;HapScore=1;MGOF=32;MMLQ=12;MQ=59.98;NF=102;NR=95;PP=83;QD=0.58883248731;SC=TTTTTTTTGCCTTCTTTAGAT;SbPval=0.33;Source=Platypus;TC=18939;TCF=9571;TCR=9368;TR=197;WE=392830;WS=392793 GT:GL:GOF:GQ:NR:NV 0/1:-3.09,0.0,-300.0:32:31:375:2 0/0:0.0,-52.09,-300.0:1:99:169:0 0/0:0.0,-36.11,-300.0:1:99:128:0 0/0:0.0,-23.18,-300.0:2:99:77:1 0/1:-9.35,0.0,-300.0:30:93:310:4 0/0:0.0,-25.16,-300.0:1:99:78:0 0/0:0.0,-40.78,-300.0:2:99:131:1 0/0:0.0,-26.94,-300.0:2:99:90:0 0/0:0.0,-51.27,-300.0:5:99:175:2 0/0:0.0,-129.58,-300.0:19:99:441:10 0/0:0.0,-140.44,-300.0:17:99:526:6 0/0:0.0,-149.09,-300.0:17:99:514:4 0/0:0.0,-140.08,-300.0:22:99:532:4 0/0:0.0,-177.98,-300.0:21:99:619:5 0/0:0.0,-132.97,-300.0:18:99:436:4 0/0:0.0,-223.11,-300.0:19:99:784:9 0/0:0.0,-136.07,-300.0:22:99:500:9 0/0:0.0,-141.83,-300.0:19:99:477:9 0/0:0.0,-163.26,-300.0:18:99:565:2 0/0:0.0,-300.0,-300.0:20:99:1847:23 0/0:0.0,-147.24,-300.0:19:99:519:2 0/0:0.0,-254.3,-300.0:24:99:886:6 0/0:0.0,-143.03,-300.0:18:99:491:5 0/0:0.0,-209.92,-300.0:17:99:720:11 0/0:0.0,-144.69,-300.0:19:99:505:4 0/0:0.0,-120.7,-300.0:21:99:426:5 0/0:0.0,-204.74,-300.0:19:99:707:13 0/0:0.0,-242.15,-300.0:19:99:843:14 0/0:0.0,-46.71,-300.0:4:99:158:0 0/0:0.0,-50.93,-300.0:5:99:171:2 0/0:0.0,-44.67,-300.0:7:99:154:0 0/0:0.0,-55.85,-300.0:4:99:179:0 0/0:0.0,-51.45,-300.0:3:99:176:3 0/0:0.0,-47.27,-300.0:3:99:162:1 0/0:0.0,-29.53,-300.0:4:99:95:3 0/0:0.0,-47.44,-300.0:2:99:157:0 0/0:0.0,-57.55,-300.0:5:99:191:1 0/0:0.0,-50.52,-300.0:4:99:172:1 0/0:0.0,-47.87,-300.0:5:99:164:2 0/0:0.0,-58.43,-300.0:5:99:200:4 0/0:0.0,-36.95,-300.0:6:99:125:0 0/0:0.0,-40.38,-300.0:3:99:132:1 0/0:0.0,-37.2,-300.0:2:99:121:1 0/0:0.0,-54.19,-300.0:3:99:181:1 0/0:0.0,-54.19,-300.0:4:99:190:2 0/0:0.0,-138.69,-300.0:24:99:462:2 0/0:0.0,-121.76,-300.0:22:99:415:6 0/0:0.0,-185.28,-300.0:19:99:618:8 0/0:0.0,-245.24,-300.0:19:99:845:4 chrXII 394690 . AT A 783 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=2;HapScore=1;MGOF=35;MMLQ=12;MQ=59.95;NF=105;NR=136;PP=783;QD=3.36514522822;SC=ACTAGTTGAAATTGAAAAAAA;SbPval=0.6;Source=Platypus;TC=18007;TCF=8083;TCR=9924;TR=241;WE=394702;WS=394680 GT:GL:GOF:GQ:NR:NV 1/0:-47.32,0.0,-300.0:35:99:340:5 0/0:0.0,-61.93,-300.0:1:99:213:6 0/0:0.0,-42.32,-300.0:1:99:139:2 0/0:0.0,-25.84,-300.0:2:99:83:1 1/0:-34.67,0.0,-300.0:31:99:302:3 0/0:0.0,-26.98,-300.0:2:99:93:3 0/0:0.0,-44.1,-300.0:2:99:143:5 0/0:0.0,-37.71,-300.0:1:99:122:7 0/0:0.0,-45.42,-300.0:16:99:147:1 0/0:0.0,-111.76,-300.0:22:99:393:2 0/0:0.0,-160.26,-300.0:18:99:534:6 0/0:0.0,-141.15,-300.0:20:99:472:4 0/0:0.0,-151.32,-300.0:20:99:538:11 0/0:0.0,-169.61,-300.0:28:99:609:10 0/0:0.0,-129.46,-300.0:22:99:449:6 0/0:0.0,-197.07,-300.0:23:99:672:7 0/0:0.0,-135.51,-300.0:20:99:509:5 0/0:0.0,-148.07,-300.0:22:99:498:6 0/0:0.0,-155.36,-300.0:19:99:562:10 0/0:0.0,-300.0,-300.0:21:99:1787:21 0/0:0.0,-156.73,-300.0:22:99:518:5 0/0:0.0,-243.45,-300.0:21:99:854:7 0/0:0.0,-128.47,-300.0:20:99:472:3 0/0:0.0,-208.58,-300.0:20:99:725:5 0/0:0.0,-124.37,-300.0:18:99:407:2 0/0:0.0,-126.08,-300.0:21:99:426:5 0/0:0.0,-173.51,-300.0:25:99:607:7 0/0:0.0,-240.09,-300.0:21:99:820:9 0/0:0.0,-48.32,-300.0:19:99:161:9 0/0:0.0,-47.97,-300.0:12:99:162:2 0/0:0.0,-37.12,-300.0:13:99:120:4 0/0:0.0,-42.13,-300.0:16:99:147:3 0/0:0.0,-43.48,-300.0:12:99:141:1 0/0:0.0,-44.63,-300.0:11:99:144:1 0/0:0.0,-20.03,-262.48:8:99:66:0 0/0:0.0,-39.73,-300.0:14:99:131:1 0/0:0.0,-45.69,-300.0:14:99:156:3 0/0:0.0,-44.94,-300.0:16:99:151:1 0/0:0.0,-48.89,-300.0:16:99:161:3 0/0:0.0,-53.49,-300.0:12:99:177:3 0/0:0.0,-28.55,-300.0:16:99:102:1 0/0:0.0,-27.42,-300.0:13:99:117:4 0/0:0.0,-28.49,-300.0:16:99:93:4 0/0:0.0,-55.04,-300.0:17:99:185:5 0/0:0.0,-52.42,-300.0:11:99:174:5 0/0:0.0,-151.83,-300.0:26:99:525:8 0/0:0.0,-91.24,-300.0:27:99:339:3 0/0:0.0,-157.81,-300.0:24:99:548:7 0/0:0.0,-223.0,-300.0:22:99:773:9 chrXII 394692 . TG T 783 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=1;HapScore=1;MGOF=35;MMLQ=12;MQ=59.94;NF=105;NR=137;PP=783;QD=3.35123966942;SC=TAGTTGAAATTGAAAAAAAAA;SbPval=0.6;Source=Platypus;TC=17824;TCF=7987;TCR=9837;TR=242;WE=394702;WS=394680 GT:GL:GOF:GQ:NR:NV 1/0:-47.32,0.0,-300.0:35:99:334:5 0/0:0.0,-61.93,-300.0:1:99:209:6 0/0:0.0,-42.32,-300.0:1:99:140:2 0/0:0.0,-25.84,-300.0:2:99:79:1 1/0:-34.67,0.0,-300.0:31:99:297:3 0/0:0.0,-26.98,-300.0:2:99:87:3 0/0:0.0,-44.1,-300.0:2:99:142:5 0/0:0.0,-37.71,-300.0:1:99:120:7 0/0:0.0,-45.42,-300.0:16:99:147:1 0/0:0.0,-111.76,-300.0:22:99:389:2 0/0:0.0,-160.26,-300.0:18:99:529:6 0/0:0.0,-141.15,-300.0:20:99:464:4 0/0:0.0,-151.32,-300.0:20:99:532:11 0/0:0.0,-169.61,-300.0:28:99:596:10 0/0:0.0,-129.46,-300.0:22:99:445:6 0/0:0.0,-197.07,-300.0:23:99:671:7 0/0:0.0,-135.51,-300.0:20:99:500:5 0/0:0.0,-148.07,-300.0:22:99:494:6 0/0:0.0,-155.36,-300.0:19:99:554:10 0/0:0.0,-300.0,-300.0:21:99:1774:21 0/0:0.0,-156.73,-300.0:22:99:514:5 0/0:0.0,-243.45,-300.0:21:99:853:7 0/0:0.0,-128.47,-300.0:20:99:464:3 0/0:0.0,-208.58,-300.0:20:99:721:5 0/0:0.0,-124.37,-300.0:18:99:403:2 0/0:0.0,-126.08,-300.0:21:99:422:5 0/0:0.0,-173.51,-300.0:25:99:599:7 0/0:0.0,-240.09,-300.0:21:99:818:10 0/0:0.0,-48.32,-300.0:19:99:158:9 0/0:0.0,-47.97,-300.0:12:99:157:2 0/0:0.0,-37.12,-300.0:13:99:118:4 0/0:0.0,-42.13,-300.0:16:99:147:3 0/0:0.0,-43.48,-300.0:12:99:140:1 0/0:0.0,-44.63,-300.0:11:99:142:1 0/0:0.0,-20.03,-230.85:8:99:62:0 0/0:0.0,-39.73,-300.0:14:99:128:1 0/0:0.0,-45.69,-300.0:14:99:154:3 0/0:0.0,-44.94,-300.0:16:99:145:1 0/0:0.0,-48.89,-300.0:16:99:159:3 0/0:0.0,-53.49,-300.0:12:99:175:3 0/0:0.0,-28.55,-300.0:16:99:98:1 0/0:0.0,-27.42,-300.0:13:99:115:4 0/0:0.0,-28.49,-300.0:16:99:91:4 0/0:0.0,-55.04,-300.0:17:99:183:5 0/0:0.0,-52.42,-300.0:11:99:173:5 0/0:0.0,-151.83,-300.0:26:99:517:8 0/0:0.0,-91.24,-300.0:27:99:347:3 0/0:0.0,-157.81,-300.0:24:99:545:7 0/0:0.0,-223.0,-300.0:22:99:773:9 chrXII 394693 . G GAA 808 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=13;HapScore=1;MGOF=35;MMLQ=12;MQ=59.94;NF=100;NR=141;PP=808;QD=3.3734439834;SC=AGTTGAAATTGAAAAAAAAAA;SbPval=0.75;Source=Platypus;TC=18466;TCF=8218;TCR=10248;TR=241;WE=394702;WS=394680 GT:GL:GOF:GQ:NR:NV 1/0:-47.32,0.0,-300.0:35:99:337:5 0/0:0.0,-61.93,-300.0:1:99:217:6 0/0:0.0,-42.32,-229.15:1:99:154:2 0/0:0.0,-25.84,-162.26:2:99:76:0 1/0:-34.67,0.0,-300.0:31:99:315:2 0/0:0.0,-26.98,-155.05:2:99:84:2 0/0:0.0,-44.1,-239.95:2:99:140:3 0/0:0.0,-37.71,-203.15:1:99:118:7 0/0:0.0,-45.42,-272.35:16:99:153:1 0/0:0.0,-111.76,-300.0:22:99:415:2 0/0:0.0,-160.26,-300.0:18:99:542:6 0/0:0.0,-141.15,-300.0:20:99:476:4 0/0:0.0,-151.32,-300.0:20:99:551:11 0/0:0.0,-169.61,-300.0:28:99:613:10 0/0:0.0,-129.46,-300.0:22:99:463:6 0/0:0.0,-197.07,-300.0:23:99:699:7 0/0:0.0,-135.51,-300.0:20:99:524:5 0/0:0.0,-148.07,-300.0:22:99:510:6 0/0:0.0,-155.36,-300.0:19:99:577:10 0/0:0.0,-300.0,-300.0:21:99:1844:21 0/0:0.0,-156.73,-300.0:22:99:550:5 0/0:0.0,-243.45,-300.0:21:99:891:8 0/0:0.0,-128.47,-300.0:20:99:470:3 0/0:0.0,-208.58,-300.0:21:99:749:7 0/0:0.0,-124.37,-300.0:19:99:419:2 0/0:0.0,-126.08,-300.0:21:99:424:5 0/0:0.0,-173.51,-300.0:25:99:617:7 0/0:0.0,-240.09,-300.0:21:99:853:10 0/0:0.0,-48.32,-281.05:19:99:160:9 0/0:0.0,-47.97,-295.85:13:99:163:2 0/0:0.0,-37.12,-211.63:13:99:119:4 0/0:0.0,-42.13,-257.71:17:99:153:3 0/0:0.0,-43.48,-251.55:12:99:139:1 0/0:0.0,-44.63,-253.05:11:99:145:1 0/0:0.0,-20.03,-131.65:8:99:65:0 0/0:0.0,-39.73,-245.55:15:99:138:1 0/0:0.0,-45.69,-255.15:14:99:158:3 0/0:0.0,-44.94,-266.35:16:99:147:1 0/0:0.0,-48.89,-280.75:16:99:162:3 0/0:0.0,-53.49,-300.0:13:99:190:3 0/0:0.0,-28.55,-190.82:17:99:101:1 0/0:0.0,-27.42,-206.47:13:99:117:4 0/0:0.0,-28.49,-176.49:16:99:96:4 0/0:0.0,-55.04,-300.0:18:99:187:5 0/0:0.0,-52.42,-298.05:11:99:180:5 0/0:0.0,-151.83,-300.0:26:99:536:9 0/0:0.0,-91.24,-300.0:27:99:362:3 0/0:0.0,-157.81,-300.0:24:99:567:7 0/0:0.0,-223.0,-300.0:22:99:800:9 chrXII 402737 . A T 446 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=13;HapScore=1;MGOF=38;MMLQ=12;MQ=59.96;NF=11;NR=636;PP=446;QD=0.743077608265;SC=TAGGTCATGCATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=19842;TCF=9650;TCR=10192;TR=647;WE=402747;WS=402713 GT:GL:GOF:GQ:NR:NV 0/1:-13.24,0.0,-300.0:38:99:431:73 0/0:0.0,-53.6,-300.0:1:99:191:0 0/0:0.0,-38.33,-300.0:1:99:134:1 0/0:0.0,-22.45,-232.96:1:99:82:0 0/1:-35.69,0.0,-300.0:37:99:333:75 0/0:0.0,-28.67,-299.06:1:99:98:0 0/0:0.0,-39.81,-300.0:1:99:140:1 0/0:0.0,-29.64,-300.0:1:99:102:0 0/0:0.0,-31.38,-300.0:17:99:173:14 0/0:0.0,-116.57,-300.0:18:99:447:11 0/0:0.0,-139.33,-300.0:20:99:542:16 0/0:0.0,-141.89,-300.0:20:99:516:7 0/0:0.0,-155.88,-300.0:19:99:564:6 0/0:0.0,-165.42,-300.0:20:99:590:6 0/0:0.0,-114.75,-300.0:22:99:442:9 0/0:0.0,-202.0,-300.0:17:99:768:12 0/0:0.0,-141.64,-300.0:18:99:519:10 0/0:0.0,-140.73,-300.0:19:99:531:10 0/0:0.0,-188.35,-300.0:20:99:702:9 0/0:0.0,-300.0,-300.0:18:99:1904:39 0/0:0.0,-139.3,-300.0:20:99:531:10 0/0:0.0,-252.84,-300.0:17:99:960:18 0/0:0.0,-149.47,-300.0:19:99:515:4 0/0:0.0,-209.43,-300.0:17:99:753:9 0/0:0.0,-141.35,-300.0:19:99:519:5 0/0:0.0,-109.87,-300.0:19:99:404:6 0/0:0.0,-184.38,-300.0:23:99:673:11 0/0:0.0,-237.45,-300.0:19:99:889:13 0/0:0.0,-24.97,-300.0:16:99:152:12 0/0:0.0,-18.78,-300.0:18:99:212:23 0/0:0.0,-31.99,-300.0:15:99:146:5 0/0:0.0,-28.23,-300.0:13:99:199:18 0/0:0.0,-13.17,-300.0:16:99:170:17 0/0:0.0,-5.83,-300.0:15:58:160:23 0/0:0.0,-12.93,-219.36:16:99:80:8 0/0:0.0,-23.89,-300.0:16:99:151:12 0/0:0.0,-30.49,-300.0:15:99:169:10 0/0:0.0,-28.98,-300.0:15:99:182:14 0/0:0.0,-26.55,-300.0:15:99:183:18 0/0:0.0,-31.43,-300.0:15:99:196:16 0/0:0.0,-24.28,-296.76:19:99:109:5 0/0:0.0,-20.21,-300.0:16:99:142:13 0/0:0.0,-17.04,-300.0:20:99:114:12 0/0:0.0,-25.38,-300.0:20:99:168:15 0/0:0.0,-27.16,-300.0:15:99:219:23 0/0:0.0,-152.31,-300.0:19:99:534:2 0/0:0.0,-125.03,-300.0:19:99:465:9 0/0:0.0,-186.21,-300.0:18:99:669:7 0/0:0.0,-270.85,-300.0:21:99:969:10 chrXII 415698 . TA AA,TAA 2965 badReads;alleleBias BRF=0.03;FR=0.2688,0.1574;HP=14;HapScore=1;MGOF=46;MMLQ=12;MQ=59.71;NF=241,431;NR=2511,254;PP=2965,2681;QD=20;SC=AAAATGAGAATAAAAAAAAAA;SbPval=0.0;Source=Platypus;TC=18538;TCF=9665;TCR=8873;TR=2752,685;WE=415723;WS=415653 GT:GL:GOF:GQ:NR:NV 1/0:-1,-1,-1:45:3:262,226:30,14 0/0:-1,-1,-1:4:99:230,201:42,16 0/0:-1,-1,-1:4:99:168,163:21,14 0/0:-1,-1,-1:5:73:88,82:16,8 1/0:-1,-1,-1:46:3:287,208:23,8 0/0:-1,-1,-1:3:99:111,98:19,5 0/0:-1,-1,-1:6:99:128,123:14,8 0/0:-1,-1,-1:6:58:109,97:32,6 2/0:-1,-1,-1:37:45:131,110:11,13 0/0:-1,-1,-1:35:38:408,398:59,15 1/0:-1,-1,-1:40:99:565,530:86,21 1/0:-1,-1,-1:35:78:456,424:66,13 0/0:-1,-1,-1:34:7:521,511:78,16 1/0:-1,-1,-1:37:99:617,617:109,15 1/0:-1,-1,-1:38:48:461,433:63,15 0/0:-1,-1,-1:39:28:738,705:110,21 1/0:-1,-1,-1:38:99:472,454:83,13 1/0:-1,-1,-1:35:99:507,483:85,11 1/0:-1,-1,-1:36:99:581,524:101,15 0/0:-1,-1,-1:38:33:1883,1805:278,55 1/0:-1,-1,-1:37:99:563,538:85,20 1/0:-1,-1,-1:36:99:939,840:135,27 0/0:-1,-1,-1:36:99:571,531:67,16 1/0:-1,-1,-1:43:99:729,705:123,21 0/0:-1,-1,-1:34:42:455,441:61,12 0/0:-1,-1,-1:31:24:402,358:65,11 1/0:-1,-1,-1:35:29:671,638:101,23 1/0:-1,-1,-1:34:99:843,789:131,32 1/0:-1,-1,-1:34:3:94,74:14,7 2/0:-1,-1,-1:36:60:136,109:10,11 2/0:-1,-1,-1:35:26:100,88:16,10 2/0:-1,-1,-1:34:77:121,101:12,7 0/0:-1,-1,-1:31:4:82,70:8,4 1/0:-1,-1,-1:35:3:118,92:20,11 2/0:-1,-1,-1:37:10:65,54:9,6 1/0:-1,-1,-1:36:99:105,95:17,4 1/0:-1,-1,-1:36:44:138,102:19,3 2/0:-1,-1,-1:42:38:123,102:15,13 2/0:-1,-1,-1:41:27:100,96:14,10 2/0:-1,-1,-1:31:30:135,121:14,6 0/0:-1,-1,-1:33:20:96,82:11,4 1/0:-1,-1,-1:37:3:89,71:15,7 1/0:-1,-1,-1:37:33:88,76:11,6 1/0:-1,-1,-1:31:3:106,87:17,10 1/0:-1,-1,-1:37:3:110,95:13,9 1/0:-1,-1,-1:34:79:522,503:81,17 1/0:-1,-1,-1:37:56:510,478:83,17 1/0:-1,-1,-1:40:99:705,655:98,19 1/0:-1,-1,-1:42:50:1099,1059:161,40 chrXII 415710 . AGCAG A 2884 SC;badReads;alleleBias BRF=0.03;FR=0.1574;HP=11;HapScore=1;MGOF=46;MMLQ=13;MQ=59.65;NF=423;NR=342;PP=2884;QD=20;SC=AAAAAAAAAAAGCAGAAAAAA;SbPval=0.51;Source=Platypus;TC=18245;TCF=9414;TCR=8831;TR=765;WE=415723;WS=415653 GT:GL:GOF:GQ:NR:NV 1/0:-45.66,0.0,-300.0:45:99:272:23 0/0:0.0,-44.92,-300.0:4:99:217:22 0/0:0.0,-27.88,-300.0:4:99:166:16 0/0:0.0,-21.63,-272.69:5:99:87:9 1/0:-47.79,0.0,-300.0:46:99:271:21 0/0:0.0,-29.73,-300.0:3:99:110:6 0/0:0.0,-32.05,-300.0:6:99:123:9 0/0:0.0,-25.83,-300.0:6:99:105:9 1/0:-12.25,0.0,-243.92:37:99:120:13 0/0:0.0,-100.24,-300.0:35:99:410:15 0/0:0.0,-130.33,-300.0:40:99:557:21 0/0:0.0,-100.71,-300.0:35:99:470:14 0/0:0.0,-119.21,-300.0:34:99:529:19 0/0:0.0,-157.77,-300.0:37:99:632:15 0/0:0.0,-107.59,-300.0:38:99:454:14 0/0:0.0,-150.49,-300.0:39:99:731:24 0/0:0.0,-138.49,-300.0:38:99:485:14 0/0:0.0,-142.07,-300.0:35:99:510:11 0/0:0.0,-157.27,-300.0:36:99:567:20 0/0:0.0,-300.0,-300.0:38:99:1891:61 0/0:0.0,-136.03,-300.0:37:99:548:19 0/0:0.0,-202.5,-300.0:36:99:885:27 0/0:0.0,-125.73,-300.0:36:99:551:15 0/0:0.0,-168.58,-300.0:43:99:715:20 0/0:0.0,-107.43,-300.0:34:99:454:13 0/0:0.0,-92.18,-300.0:31:99:378:8 0/0:0.0,-152.0,-300.0:35:99:651:27 0/0:0.0,-224.79,-300.0:34:99:825:28 1/0:-9.5,0.0,-148.23:34:95:89:11 1/0:-53.01,0.0,-227.17:36:99:132:18 1/0:-21.68,0.0,-173.85:35:99:96:13 1/0:-19.37,0.0,-233.56:34:99:112:9 ./.:0.0,-0.13,-182.44:31:4:81:6 1/0:-7.37,0.0,-183.35:35:74:101:12 1/0:-5.36,0.0,-136.55:37:54:61:6 0/0:0.0,-23.58,-241.0:36:99:105:3 0/0:0.0,-8.2,-277.66:36:82:125:5 1/0:-6.24,0.0,-252.29:42:62:120:12 1/0:-9.62,0.0,-213.03:41:96:103:11 1/0:-17.33,0.0,-233.25:31:99:133:10 0/0:0.0,-13.85,-211.84:33:99:87:4 1/0:-24.87,0.0,-142.53:37:99:81:11 0/0:0.0,-15.34,-198.55:37:99:76:4 1/0:-7.81,0.0,-216.5:31:78:107:11 1/0:-8.07,0.0,-226.92:37:81:111:9 0/0:0.0,-110.46,-300.0:34:99:532:21 0/0:0.0,-128.84,-300.0:37:99:505:17 0/0:0.0,-161.4,-300.0:40:99:682:19 0/0:0.0,-210.62,-300.0:42:99:1092:40 chrXII 415714 . G GA 1631 SC;badReads;QD;alleleBias BRF=0.03;FR=0.1574;HP=12;HapScore=1;MGOF=46;MMLQ=14;MQ=59.67;NF=324;NR=335;PP=1631;QD=2.48861911988;SC=AAAAAAAGCAGAAAAAAAAAA;SbPval=0.87;Source=Platypus;TC=18462;TCF=9376;TCR=9086;TR=659;WE=415723;WS=415653 GT:GL:GOF:GQ:NR:NV 1/0:-15.66,0.0,-300.0:45:99:270:23 0/0:0.0,-44.92,-300.0:4:99:200:16 0/0:0.0,-27.88,-238.62:4:99:143:11 0/0:0.0,-21.63,-177.43:5:99:85:7 1/0:-13.96,0.0,-300.0:46:99:277:19 0/0:0.0,-29.73,-219.72:3:99:103:4 0/0:0.0,-32.05,-220.68:6:99:122:7 0/0:0.0,-25.83,-207.07:6:99:100:8 1/0:-12.25,0.0,-175.33:37:99:119:9 0/0:0.0,-100.24,-300.0:35:99:430:15 0/0:0.0,-130.33,-300.0:40:99:559:16 0/0:0.0,-100.71,-300.0:35:99:480:14 0/0:0.0,-119.21,-300.0:34:99:542:17 0/0:0.0,-157.77,-300.0:37:99:637:14 0/0:0.0,-107.59,-300.0:38:99:460:14 0/0:0.0,-150.49,-300.0:39:99:741:23 0/0:0.0,-138.49,-300.0:38:99:488:14 0/0:0.0,-142.07,-300.0:35:99:523:9 0/0:0.0,-157.27,-300.0:36:99:585:18 0/0:0.0,-300.0,-300.0:38:99:1911:53 0/0:0.0,-136.03,-300.0:37:99:554:15 0/0:0.0,-202.5,-300.0:36:99:916:25 0/0:0.0,-125.73,-300.0:36:99:548:9 0/0:0.0,-168.58,-300.0:43:99:727:18 0/0:0.0,-107.43,-300.0:34:99:465:12 0/0:0.0,-92.18,-300.0:31:99:398:7 0/0:0.0,-152.0,-300.0:35:99:681:26 0/0:0.0,-224.79,-300.0:34:99:839:26 1/0:-9.5,0.0,-133.02:34:95:88:10 1/0:-17.76,0.0,-171.64:36:99:125:13 1/0:-13.7,0.0,-138.35:35:99:96:11 1/0:-14.57,0.0,-163.13:34:99:117:7 ./.:0.0,-0.13,-136.59:31:4:81:5 1/0:-7.37,0.0,-152.4:35:74:97:8 1/0:-5.36,0.0,-119.93:37:54:56:3 0/0:0.0,-23.58,-183.88:36:99:105:3 0/0:0.0,-8.2,-190.71:36:82:128:4 1/0:-6.24,0.0,-171.44:42:62:121:10 1/0:-9.62,0.0,-150.56:41:96:97:7 1/0:-16.4,0.0,-172.61:31:99:135:8 0/0:0.0,-13.85,-162.05:33:99:87:3 1/0:-12.71,0.0,-125.93:37:99:80:10 0/0:0.0,-15.34,-150.35:37:99:76:3 1/0:-7.81,0.0,-163.32:31:78:108:9 1/0:-8.07,0.0,-167.97:37:81:113:6 0/0:0.0,-110.46,-300.0:34:99:551:21 0/0:0.0,-128.84,-300.0:37:99:514:15 0/0:0.0,-161.4,-300.0:40:99:694:16 0/0:0.0,-210.62,-300.0:42:99:1090:38 chrXII 421496 . A AG 2992 SC;badReads;strandBias;alleleBias BRF=0.02;FR=0.2347;HP=16;HapScore=1;MGOF=29;MMLQ=12;MQ=59.77;NF=254;NR=255;PP=2992;QD=20;SC=AAAGAGGGGGAGGGGGGGGGG;SbPval=0.0;Source=Platypus;TC=12837;TCF=10657;TCR=2180;TR=509;WE=421532;WS=421475 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-49.88,-300.0:19:99:299:15 0/0:0.0,-9.86,-30.58:6:99:75:3 0/0:0.0,-5.82,-20.99:3:58:49:0 0/0:0.0,-7.28,-22.93:4:73:39:0 0/0:0.0,-43.99,-266.65:18:99:279:16 0/0:0.0,-7.61,-21.76:4:76:41:1 0/0:0.0,-7.11,-27.99:5:71:59:1 0/0:0.0,-7.33,-22.1:5:73:32:3 0/0:0.0,-24.29,-113.17:20:99:104:8 1/0:-32.54,0.0,-154.88:21:99:274:5 1/0:-23.59,0.0,-217.47:23:99:348:11 1/0:-64.03,0.0,-178.99:21:99:351:10 1/0:-42.94,0.0,-194.81:22:99:396:18 1/0:-18.12,0.0,-203.4:25:99:401:14 1/0:-31.64,0.0,-186.84:26:99:306:15 1/0:-59.48,0.0,-278.28:22:99:543:18 1/0:-29.03,0.0,-175.8:23:99:333:14 1/0:-50.67,0.0,-140.36:23:99:305:13 1/0:-59.27,0.0,-192.18:22:99:361:12 1/0:-125.54,0.0,-300.0:25:99:1210:50 1/0:-48.04,0.0,-218.65:25:99:383:9 1/0:-72.17,0.0,-300.0:25:99:611:23 1/0:-75.18,0.0,-166.01:24:99:320:9 1/0:-51.01,0.0,-280.99:24:99:501:15 1/0:-73.29,0.0,-144.57:23:99:309:12 1/0:-10.85,0.0,-118.57:23:99:256:15 1/0:-38.67,0.0,-199.27:24:99:410:9 1/0:-56.05,0.0,-270.95:23:99:493:16 0/0:0.0,-18.13,-82.14:22:99:94:5 0/0:0.0,-17.54,-107.12:18:99:125:6 0/0:0.0,-20.41,-95.18:21:99:104:9 0/0:0.0,-20.37,-108.7:24:99:127:4 0/0:0.0,-15.13,-82.44:23:99:111:16 0/0:0.0,-25.81,-122.01:16:99:122:8 0/0:0.0,-6.82,-47.05:27:68:52:6 0/0:0.0,-12.23,-79.33:17:99:107:7 0/0:0.0,-22.3,-115.3:21:99:130:8 0/0:0.0,-14.57,-98.7:25:99:111:8 0/0:0.0,-16.05,-95.04:17:99:109:4 0/0:0.0,-25.84,-125.91:25:99:152:10 0/0:0.0,-14.67,-70.91:24:99:79:3 0/0:0.0,-15.54,-84.33:22:99:98:3 0/0:0.0,-10.55,-76.79:29:99:82:3 0/0:0.0,-26.69,-133.08:20:99:153:9 0/0:0.0,-24.63,-112.4:20:99:125:7 1/0:-35.14,0.0,-172.09:23:99:337:14 1/0:-26.33,0.0,-180.9:27:99:321:9 1/0:-65.1,0.0,-255.25:25:99:506:12 1/0:-58.33,0.0,-300.0:23:99:704:23 chrXII 421507 . GT G 2992 badReads;strandBias;alleleBias BRF=0.02;FR=0.2347;HP=10;HapScore=1;MGOF=29;MMLQ=12;MQ=59.78;NF=249;NR=291;PP=2992;QD=20;SC=GGGGGGGGGGGTATGCGGTTT;SbPval=0.0;Source=Platypus;TC=13587;TCF=9403;TCR=4184;TR=540;WE=421532;WS=421475 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-80.13,-300.0:19:99:345:17 0/0:0.0,-12.14,-94.48:6:99:80:3 0/0:0.0,-5.82,-66.04:3:58:55:1 0/0:0.0,-7.28,-72.3:4:73:40:0 0/0:0.0,-65.25,-300.0:18:99:312:16 0/0:0.0,-8.31,-78.7:4:83:51:1 0/0:0.0,-7.11,-86.07:5:71:62:2 0/0:0.0,-8.79,-63.82:5:88:41:3 0/0:0.0,-27.95,-254.83:20:99:115:8 1/0:-32.54,0.0,-300.0:21:99:300:4 1/0:-23.59,0.0,-300.0:23:99:380:10 1/0:-64.03,0.0,-300.0:21:99:364:11 1/0:-42.94,0.0,-300.0:22:99:406:18 1/0:-18.12,0.0,-300.0:25:99:409:15 1/0:-31.64,0.0,-300.0:26:99:317:16 1/0:-59.48,0.0,-300.0:22:99:561:19 1/0:-29.03,0.0,-300.0:23:99:338:15 1/0:-50.67,0.0,-300.0:23:99:323:14 1/0:-59.27,0.0,-300.0:22:99:385:12 1/0:-125.54,0.0,-300.0:25:99:1304:56 1/0:-48.04,0.0,-300.0:25:99:405:10 1/0:-72.17,0.0,-300.0:25:99:642:24 1/0:-75.18,0.0,-300.0:24:99:348:11 1/0:-51.01,0.0,-300.0:24:99:509:16 1/0:-73.29,0.0,-300.0:23:99:324:12 1/0:-10.85,0.0,-300.0:23:99:266:17 1/0:-38.67,0.0,-300.0:24:99:410:10 1/0:-56.05,0.0,-300.0:23:99:545:18 0/0:0.0,-18.13,-217.69:22:99:101:5 0/0:0.0,-31.0,-287.3:18:99:129:6 0/0:0.0,-20.42,-210.41:21:99:107:9 0/0:0.0,-20.37,-249.24:24:99:129:4 0/0:0.0,-20.06,-221.51:23:99:116:16 0/0:0.0,-26.48,-275.63:16:99:130:8 0/0:0.0,-6.82,-95.53:27:68:58:6 0/0:0.0,-12.23,-196.23:17:99:108:7 0/0:0.0,-28.43,-278.13:21:99:132:8 0/0:0.0,-14.57,-214.26:25:99:117:9 0/0:0.0,-16.05,-215.63:17:99:120:4 0/0:0.0,-27.92,-300.0:25:99:160:11 0/0:0.0,-14.83,-160.85:24:99:91:4 0/0:0.0,-15.54,-207.9:22:99:102:3 0/0:0.0,-10.55,-165.73:29:99:84:3 0/0:0.0,-30.94,-300.0:20:99:158:9 0/0:0.0,-28.3,-281.79:20:99:120:7 1/0:-35.14,0.0,-300.0:23:99:339:14 1/0:-26.33,0.0,-300.0:27:99:344:11 1/0:-65.1,0.0,-300.0:25:99:529:13 1/0:-58.33,0.0,-300.0:23:99:776:24 chrXII 423569 . TC T 486 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=14;HapScore=1;MGOF=54;MMLQ=12;MQ=59.89;NF=282;NR=189;PP=486;QD=1.03821656051;SC=TTTTTTTTTTTCAGTTCACTG;SbPval=0.18;Source=Platypus;TC=18058;TCF=10086;TCR=7972;TR=471;WE=423591;WS=423558 GT:GL:GOF:GQ:NR:NV 0/1:-31.85,0.0,-300.0:54:99:283:4 0/0:0.0,-54.07,-300.0:4:99:173:17 0/0:0.0,-35.11,-300.0:4:99:117:8 0/0:0.0,-23.96,-300.0:8:99:71:5 0/1:-17.65,0.0,-300.0:46:99:262:5 0/0:0.0,-29.93,-300.0:4:99:93:9 0/0:0.0,-36.3,-300.0:2:99:114:3 0/0:0.0,-26.67,-300.0:2:99:86:5 0/0:0.0,-53.96,-300.0:43:99:173:2 0/0:0.0,-119.28,-300.0:38:99:403:9 0/0:0.0,-154.8,-300.0:42:99:506:11 0/0:0.0,-132.23,-300.0:40:99:427:13 0/0:0.0,-162.45,-300.0:35:99:542:9 0/0:0.0,-158.02,-300.0:40:99:553:16 0/0:0.0,-123.28,-300.0:38:99:404:7 0/0:0.0,-225.78,-300.0:37:99:749:19 0/0:0.0,-129.34,-300.0:36:99:454:9 0/0:0.0,-139.85,-300.0:44:99:461:14 0/0:0.0,-144.28,-300.0:37:99:499:17 0/0:0.0,-300.0,-300.0:37:99:1658:39 0/0:0.0,-148.66,-300.0:35:99:494:8 0/0:0.0,-240.5,-300.0:40:99:804:16 0/0:0.0,-154.87,-300.0:33:99:520:10 0/0:0.0,-205.32,-300.0:38:99:692:17 0/0:0.0,-141.64,-300.0:37:99:462:7 0/0:0.0,-104.33,-300.0:34:99:360:6 0/0:0.0,-203.9,-300.0:36:99:674:19 0/0:0.0,-214.89,-300.0:39:99:751:21 0/0:0.0,-45.54,-300.0:39:99:149:3 0/0:0.0,-50.08,-300.0:39:99:165:7 0/0:0.0,-40.37,-300.0:38:99:133:7 0/0:0.0,-60.0,-300.0:42:99:193:6 0/0:0.0,-50.06,-300.0:47:99:160:5 0/0:0.0,-54.14,-300.0:39:99:174:5 0/0:0.0,-23.93,-300.0:40:99:75:6 0/0:0.0,-50.32,-300.0:43:99:177:3 0/0:0.0,-52.17,-300.0:38:99:170:2 0/0:0.0,-52.38,-300.0:41:99:173:4 0/0:0.0,-56.91,-300.0:42:99:182:6 0/0:0.0,-67.34,-300.0:47:99:215:7 0/0:0.0,-36.52,-300.0:39:99:117:3 0/0:0.0,-39.63,-300.0:34:99:129:2 0/0:0.0,-40.51,-300.0:38:99:129:6 0/0:0.0,-46.57,-300.0:38:99:175:7 0/0:0.0,-56.34,-300.0:38:99:181:5 0/0:0.0,-138.11,-300.0:34:99:465:14 0/0:0.0,-139.21,-300.0:39:99:456:6 0/0:0.0,-187.88,-300.0:39:99:638:14 0/0:0.0,-300.0,-300.0:40:99:1017:28 chrXII 423570 . CA C 443 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=15;HapScore=1;MGOF=54;MMLQ=12;MQ=59.9;NF=280;NR=189;PP=443;QD=1.03624733475;SC=TTTTTTTTTTCAGTTCACTGA;SbPval=0.18;Source=Platypus;TC=17965;TCF=10024;TCR=7941;TR=469;WE=423591;WS=423558 GT:GL:GOF:GQ:NR:NV 0/1:-31.85,0.0,-300.0:54:99:278:4 0/0:0.0,-54.07,-300.0:4:99:170:17 0/0:0.0,-35.11,-300.0:4:99:120:6 0/0:0.0,-23.96,-300.0:8:99:71:5 0/1:-17.65,0.0,-300.0:46:99:262:5 0/0:0.0,-29.93,-300.0:4:99:95:9 0/0:0.0,-36.3,-300.0:2:99:115:3 0/0:0.0,-26.67,-300.0:2:99:88:4 0/0:0.0,-53.96,-300.0:43:99:174:2 0/0:0.0,-119.28,-300.0:38:99:401:9 0/0:0.0,-154.8,-300.0:42:99:496:11 0/0:0.0,-132.23,-300.0:40:99:422:13 0/0:0.0,-162.45,-300.0:35:99:542:10 0/0:0.0,-158.02,-300.0:40:99:552:16 0/0:0.0,-123.28,-300.0:38:99:408:7 0/0:0.0,-225.78,-300.0:37:99:748:19 0/0:0.0,-129.34,-300.0:36:99:453:9 0/0:0.0,-139.85,-300.0:44:99:461:14 0/0:0.0,-144.28,-300.0:37:99:498:17 0/0:0.0,-300.0,-300.0:37:99:1634:39 0/0:0.0,-148.66,-300.0:35:99:489:8 0/0:0.0,-240.5,-300.0:40:99:796:16 0/0:0.0,-154.87,-300.0:33:99:512:10 0/0:0.0,-205.32,-300.0:38:99:689:17 0/0:0.0,-141.64,-300.0:37:99:459:7 0/0:0.0,-104.33,-300.0:34:99:357:6 0/0:0.0,-203.9,-300.0:36:99:668:19 0/0:0.0,-214.89,-300.0:39:99:748:21 0/0:0.0,-45.54,-300.0:39:99:148:3 0/0:0.0,-50.08,-300.0:39:99:165:7 0/0:0.0,-40.37,-300.0:38:99:131:7 0/0:0.0,-60.0,-300.0:42:99:190:6 0/0:0.0,-50.06,-300.0:47:99:160:5 0/0:0.0,-54.14,-300.0:39:99:176:5 0/0:0.0,-23.93,-300.0:40:99:74:6 0/0:0.0,-50.32,-300.0:43:99:176:4 0/0:0.0,-52.17,-300.0:38:99:168:2 0/0:0.0,-52.38,-300.0:41:99:172:4 0/0:0.0,-56.91,-300.0:42:99:180:6 0/0:0.0,-67.34,-300.0:47:99:218:7 0/0:0.0,-36.52,-300.0:39:99:114:3 0/0:0.0,-39.63,-300.0:34:99:128:2 0/0:0.0,-40.51,-300.0:38:99:130:6 0/0:0.0,-46.57,-300.0:38:99:176:7 0/0:0.0,-56.34,-300.0:38:99:180:5 0/0:0.0,-138.11,-300.0:34:99:465:14 0/0:0.0,-139.21,-300.0:39:99:456:6 0/0:0.0,-187.88,-300.0:39:99:636:14 0/0:0.0,-300.0,-300.0:40:99:1016:27 chrXII 423571 . AG A 443 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=1;HapScore=1;MGOF=54;MMLQ=12;MQ=59.9;NF=281;NR=189;PP=443;QD=1.03404255319;SC=TTTTTTTTTCAGTTCACTGAA;SbPval=0.2;Source=Platypus;TC=17876;TCF=9998;TCR=7878;TR=470;WE=423591;WS=423558 GT:GL:GOF:GQ:NR:NV 0/1:-31.85,0.0,-300.0:54:99:282:4 0/0:0.0,-54.07,-300.0:4:99:171:17 0/0:0.0,-35.11,-300.0:4:99:118:6 0/0:0.0,-23.96,-300.0:8:99:72:5 0/1:-17.65,0.0,-300.0:46:99:262:5 0/0:0.0,-29.93,-300.0:4:99:94:9 0/0:0.0,-36.3,-300.0:2:99:115:3 0/0:0.0,-26.67,-300.0:2:99:88:4 0/0:0.0,-53.96,-300.0:43:99:173:2 0/0:0.0,-119.28,-300.0:38:99:401:9 0/0:0.0,-154.8,-300.0:42:99:500:11 0/0:0.0,-132.23,-300.0:40:99:423:13 0/0:0.0,-162.45,-300.0:35:99:537:10 0/0:0.0,-158.02,-300.0:40:99:554:16 0/0:0.0,-123.28,-300.0:38:99:405:7 0/0:0.0,-225.78,-300.0:37:99:743:20 0/0:0.0,-129.34,-300.0:36:99:452:9 0/0:0.0,-139.85,-300.0:44:99:453:14 0/0:0.0,-144.28,-300.0:37:99:500:17 0/0:0.0,-300.0,-300.0:37:99:1624:39 0/0:0.0,-148.66,-300.0:35:99:485:8 0/0:0.0,-240.5,-300.0:40:99:790:16 0/0:0.0,-154.87,-300.0:33:99:509:10 0/0:0.0,-205.32,-300.0:38:99:683:17 0/0:0.0,-141.64,-300.0:37:99:454:7 0/0:0.0,-104.33,-300.0:34:99:349:6 0/0:0.0,-203.9,-300.0:36:99:663:19 0/0:0.0,-214.89,-300.0:39:99:745:21 0/0:0.0,-45.54,-300.0:39:99:148:3 0/0:0.0,-50.08,-300.0:39:99:165:7 0/0:0.0,-40.37,-300.0:39:99:132:7 0/0:0.0,-60.0,-300.0:42:99:187:6 0/0:0.0,-50.06,-300.0:47:99:158:5 0/0:0.0,-54.14,-300.0:39:99:177:5 0/0:0.0,-23.93,-300.0:40:99:74:6 0/0:0.0,-50.32,-300.0:43:99:175:4 0/0:0.0,-52.17,-300.0:38:99:165:2 0/0:0.0,-52.38,-300.0:41:99:171:4 0/0:0.0,-56.91,-300.0:42:99:176:6 0/0:0.0,-67.34,-300.0:47:99:215:7 0/0:0.0,-36.52,-300.0:39:99:114:3 0/0:0.0,-39.63,-300.0:34:99:129:2 0/0:0.0,-40.51,-300.0:38:99:130:6 0/0:0.0,-46.57,-300.0:38:99:172:7 0/0:0.0,-56.34,-300.0:38:99:177:5 0/0:0.0,-138.11,-300.0:34:99:467:14 0/0:0.0,-139.21,-300.0:39:99:453:6 0/0:0.0,-187.88,-300.0:39:99:631:14 0/0:0.0,-300.0,-300.0:40:99:1015:27 chrXII 423609 . C A 688 badReads;QD;alleleBias BRF=0.02;FR=0.0511;HP=15;HapScore=1;MGOF=45;MMLQ=13;MQ=59.91;NF=905;NR=443;PP=688;QD=0.536180424738;SC=AGGTGAAAAACAAAAAAAAAA;SbPval=0.2;Source=Platypus;TC=18572;TCF=11121;TCR=7451;TR=1348;WE=423618;WS=423583 GT:GL:GOF:GQ:NR:NV 1/0:-37.18,0.0,-300.0:45:99:321:65 0/0:0.0,-42.07,-300.0:3:99:182:9 0/0:0.0,-31.79,-271.53:4:99:125:7 0/0:0.0,-11.1,-163.63:6:99:79:8 1/0:-26.14,0.0,-300.0:44:99:287:49 0/0:0.0,-22.86,-207.63:3:99:94:4 0/0:0.0,-32.97,-271.33:1:99:133:5 0/0:0.0,-27.53,-235.93:2:99:103:2 0/0:0.0,-9.76,-277.93:39:98:168:25 0/0:0.0,-89.34,-300.0:36:99:423:21 0/0:0.0,-108.03,-300.0:37:99:535:28 0/0:0.0,-95.99,-300.0:36:99:451:19 0/0:0.0,-126.77,-300.0:32:99:561:27 0/0:0.0,-118.59,-300.0:37:99:568:35 0/0:0.0,-91.99,-300.0:34:99:422:20 0/0:0.0,-167.91,-300.0:33:99:760:39 0/0:0.0,-79.12,-300.0:35:99:453:35 0/0:0.0,-92.81,-300.0:40:99:457:24 0/0:0.0,-103.37,-300.0:34:99:545:39 0/0:0.0,-300.0,-300.0:34:99:1675:66 0/0:0.0,-115.09,-300.0:32:99:497:18 0/0:0.0,-160.63,-300.0:33:99:828:42 0/0:0.0,-114.05,-300.0:31:99:521:25 0/0:0.0,-152.01,-300.0:34:99:702:41 0/0:0.0,-103.53,-300.0:33:99:471:26 0/0:0.0,-66.99,-300.0:31:99:388:27 0/0:0.0,-140.61,-300.0:32:99:668:34 0/0:0.0,-173.57,-300.0:35:99:778:35 0/0:0.0,-16.02,-243.03:33:99:144:19 1/0:-1.86,0.0,-242.19:33:19:190:37 0/0:0.0,-13.04,-227.53:33:99:145:22 0/0:0.0,-8.2,-273.13:38:82:179:28 0/0:0.0,-2.45,-251.73:41:25:158:28 0/0:0.0,-25.7,-293.13:34:99:177:21 0/0:0.0,-5.79,-109.51:36:58:72:13 0/0:0.0,-2.51,-242.03:35:25:153:27 1/0:-3.94,0.0,-255.46:34:39:175:37 0/0:0.0,-1.91,-248.73:35:19:166:31 0/0:0.0,-20.37,-281.03:35:99:159:19 0/0:0.0,-5.53,-300.0:41:55:219:39 1/0:-5.4,0.0,-176.53:36:54:111:22 0/0:0.0,-7.29,-226.73:30:73:137:20 0/0:0.0,-11.02,-194.13:33:99:116:17 0/0:0.0,-5.92,-256.33:32:59:173:29 0/0:0.0,-11.62,-267.13:35:99:180:30 0/0:0.0,-102.6,-300.0:32:99:494:25 0/0:0.0,-102.54,-300.0:34:99:488:18 0/0:0.0,-140.17,-300.0:35:99:682:37 0/0:0.0,-225.02,-300.0:38:99:1059:54 chrXII 426660 . AC A 1555 SC;badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=5;HapScore=1;MGOF=38;MMLQ=12;MQ=59.91;NF=142;NR=328;PP=1555;QD=3.34893617021;SC=AAACCAAAAAACCAAAAAAAA;SbPval=0.11;Source=Platypus;TC=19962;TCF=8804;TCR=11158;TR=470;WE=426685;WS=426621 GT:GL:GOF:GQ:NR:NV 1/0:-93.01,0.0,-300.0:38:99:351:6 0/0:0.0,-63.21,-300.0:1:99:216:8 0/0:0.0,-54.36,-300.0:2:99:186:8 0/0:0.0,-25.18,-188.16:1:99:80:3 1/0:-92.63,0.0,-300.0:29:99:312:9 0/0:0.0,-26.59,-207.56:1:99:89:3 0/0:0.0,-46.13,-300.0:2:99:161:12 0/0:0.0,-33.75,-264.66:1:99:112:7 0/0:0.0,-47.84,-300.0:29:99:188:7 0/0:0.0,-102.24,-300.0:25:99:408:7 0/0:0.0,-147.33,-300.0:26:99:581:8 0/0:0.0,-129.21,-300.0:31:99:509:10 0/0:0.0,-140.98,-300.0:24:99:516:10 0/0:0.0,-168.88,-300.0:28:99:625:12 0/0:0.0,-120.15,-300.0:26:99:476:6 0/0:0.0,-155.62,-300.0:25:99:713:23 0/0:0.0,-137.21,-300.0:27:99:556:15 0/0:0.0,-124.1,-300.0:26:99:528:13 0/0:0.0,-142.34,-300.0:26:99:599:10 0/0:0.0,-300.0,-300.0:26:99:1877:40 0/0:0.0,-131.92,-300.0:24:99:568:9 0/0:0.0,-198.26,-300.0:32:99:938:25 0/0:0.0,-133.23,-300.0:26:99:521:9 0/0:0.0,-171.06,-300.0:26:99:775:17 0/0:0.0,-112.15,-300.0:26:99:442:8 0/0:0.0,-105.47,-300.0:22:99:430:8 0/0:0.0,-140.14,-300.0:26:99:665:17 0/0:0.0,-189.01,-300.0:24:99:871:16 0/0:0.0,-21.97,-284.21:25:99:143:3 0/0:0.0,-40.0,-300.0:31:99:164:9 0/0:0.0,-38.3,-300.0:23:99:158:4 0/0:0.0,-45.15,-300.0:27:99:185:6 0/0:0.0,-45.94,-300.0:20:99:180:4 0/0:0.0,-36.75,-300.0:26:99:175:6 0/0:0.0,-24.04,-200.03:24:99:92:3 0/0:0.0,-46.71,-300.0:32:99:186:8 0/0:0.0,-42.3,-300.0:26:99:167:4 0/0:0.0,-39.04,-300.0:31:99:183:8 0/0:0.0,-32.33,-300.0:26:99:178:7 0/0:0.0,-47.04,-300.0:26:99:216:7 0/0:0.0,-33.52,-296.36:27:99:122:3 0/0:0.0,-28.59,-254.41:20:99:125:5 0/0:0.0,-36.53,-300.0:21:99:133:5 0/0:0.0,-35.55,-300.0:33:99:184:4 0/0:0.0,-39.97,-300.0:30:99:175:2 0/0:0.0,-111.9,-300.0:34:99:502:7 0/0:0.0,-118.53,-300.0:28:99:510:6 0/0:0.0,-146.25,-300.0:34:99:729:12 0/0:0.0,-241.88,-300.0:30:99:1162:31 chrXII 426662 . CA AA,CAA 1846 SC;badReads;QD;alleleBias BRF=0.03;FR=0.0204,0.0204;HP=14;HapScore=1;MGOF=38;MMLQ=12;MQ=59.91;NF=87,133;NR=1133,330;PP=1014,1846;QD=0.859648534875;SC=ACCAAAAAACCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=20542;TCF=9119;TCR=11423;TR=1220,463;WE=426685;WS=426621 GT:GL:GOF:GQ:NR:NV 1/0:-1,-1,-1:38:3:420,381:68,6 0/0:-1,-1,-1:1:99:225,201:1,6 0/0:-1,-1,-1:2:99:185,166:0,8 0/0:-1,-1,-1:1:99:83,76:1,3 1/0:-1,-1,-1:29:3:384,351:58,8 0/0:-1,-1,-1:1:99:91,88:2,2 0/0:-1,-1,-1:2:99:165,146:1,10 0/0:-1,-1,-1:1:99:116,102:2,6 0/0:-1,-1,-1:29:99:186,193:8,7 0/0:-1,-1,-1:25:99:418,434:18,7 0/0:-1,-1,-1:26:99:606,624:33,8 0/0:-1,-1,-1:31:99:526,554:32,9 0/0:-1,-1,-1:24:99:533,548:24,10 0/0:-1,-1,-1:28:99:623,674:28,12 0/0:-1,-1,-1:26:99:477,513:26,6 0/0:-1,-1,-1:25:99:741,759:50,23 0/0:-1,-1,-1:27:99:572,619:32,16 0/0:-1,-1,-1:26:99:540,565:37,13 0/0:-1,-1,-1:26:99:620,654:37,10 0/0:-1,-1,-1:26:99:1919,2053:125,39 0/0:-1,-1,-1:24:99:589,612:39,9 0/0:-1,-1,-1:32:99:971,1009:48,26 0/0:-1,-1,-1:26:99:546,569:25,9 0/0:-1,-1,-1:26:99:810,841:47,17 0/0:-1,-1,-1:26:99:451,479:21,8 0/0:-1,-1,-1:22:99:461,462:27,8 0/0:-1,-1,-1:26:99:673,709:49,17 0/0:-1,-1,-1:24:99:890,936:59,17 0/0:-1,-1,-1:25:99:140,150:13,3 0/0:-1,-1,-1:31:99:173,177:7,9 0/0:-1,-1,-1:23:99:155,172:8,4 0/0:-1,-1,-1:27:99:186,211:10,6 0/0:-1,-1,-1:20:99:178,186:11,4 0/0:-1,-1,-1:26:99:172,183:11,6 0/0:-1,-1,-1:24:99:91,93:10,3 0/0:-1,-1,-1:32:99:183,190:9,8 0/0:-1,-1,-1:26:99:173,182:8,4 0/0:-1,-1,-1:31:99:183,196:7,8 0/0:-1,-1,-1:26:99:175,187:8,7 0/0:-1,-1,-1:26:99:214,240:12,7 0/0:-1,-1,-1:27:99:122,133:4,3 0/0:-1,-1,-1:20:99:124,135:8,5 0/0:-1,-1,-1:21:99:134,147:8,5 0/0:-1,-1,-1:33:99:188,198:9,4 0/0:-1,-1,-1:30:99:179,176:9,2 0/0:-1,-1,-1:34:99:513,534:32,6 0/0:-1,-1,-1:28:99:523,561:24,6 0/0:-1,-1,-1:34:99:732,781:45,12 0/0:-1,-1,-1:30:99:1183,1244:69,31 chrXII 432138 . AT A 138 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=2;HapScore=1;MGOF=31;MMLQ=12;MQ=59.97;NF=146;NR=102;PP=138;QD=0.681451612903;SC=AGAATGATATATCCACAAAAA;SbPval=0.26;Source=Platypus;TC=18597;TCF=10581;TCR=8016;TR=248;WE=432162;WS=432098 GT:GL:GOF:GQ:NR:NV 1/0:-11.96,0.0,-300.0:31:99:329:3 0/0:0.0,-43.2,-300.0:2:99:150:2 0/0:0.0,-43.83,-300.0:1:99:140:5 0/0:0.0,-25.43,-300.0:1:99:79:2 1/0:-5.85,0.0,-300.0:30:58:274:3 0/0:0.0,-30.26,-300.0:1:99:95:1 0/0:0.0,-45.03,-300.0:2:99:146:3 0/0:0.0,-22.91,-300.0:2:99:77:0 0/0:0.0,-63.36,-300.0:13:99:213:4 0/0:0.0,-108.49,-300.0:24:99:374:3 0/0:0.0,-174.79,-300.0:23:99:578:7 0/0:0.0,-147.77,-300.0:20:99:472:3 0/0:0.0,-163.94,-300.0:20:99:548:8 0/0:0.0,-142.39,-300.0:24:99:502:1 0/0:0.0,-128.41,-300.0:23:99:424:7 0/0:0.0,-205.87,-300.0:19:99:703:5 0/0:0.0,-135.89,-300.0:22:99:471:10 0/0:0.0,-141.72,-300.0:24:99:495:8 0/0:0.0,-169.01,-300.0:18:99:553:9 0/0:0.0,-300.0,-300.0:22:99:1858:20 0/0:0.0,-143.21,-300.0:17:99:475:8 0/0:0.0,-231.84,-300.0:21:99:818:3 0/0:0.0,-134.67,-300.0:21:99:489:3 0/0:0.0,-217.96,-300.0:23:99:745:6 0/0:0.0,-141.46,-300.0:24:99:462:6 0/0:0.0,-109.77,-300.0:21:99:380:3 0/0:0.0,-200.92,-300.0:21:99:681:6 0/0:0.0,-240.13,-300.0:19:99:792:10 0/0:0.0,-37.82,-300.0:13:99:140:3 0/0:0.0,-63.12,-300.0:12:99:215:2 0/0:0.0,-52.73,-300.0:12:99:177:3 0/0:0.0,-52.72,-300.0:12:99:199:7 0/0:0.0,-59.58,-300.0:14:99:203:7 0/0:0.0,-53.88,-300.0:18:99:171:5 0/0:0.0,-26.32,-300.0:13:99:83:3 0/0:0.0,-40.73,-300.0:14:99:142:2 0/0:0.0,-47.29,-300.0:13:99:168:3 0/0:0.0,-58.11,-300.0:18:99:201:6 0/0:0.0,-45.57,-300.0:12:99:161:4 0/0:0.0,-63.13,-300.0:12:99:204:3 0/0:0.0,-45.71,-300.0:14:99:146:3 0/0:0.0,-42.13,-300.0:14:99:148:3 0/0:0.0,-37.06,-300.0:15:99:123:7 0/0:0.0,-64.14,-300.0:12:99:216:5 0/0:0.0,-55.43,-300.0:9:99:178:4 0/0:0.0,-140.86,-300.0:20:99:489:5 0/0:0.0,-126.93,-300.0:26:99:413:5 0/0:0.0,-171.39,-300.0:28:99:603:8 0/0:0.0,-256.89,-300.0:24:99:894:11 chrXII 432139 . TCC T 138 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=2;HapScore=1;MGOF=31;MMLQ=12;MQ=59.97;NF=146;NR=102;PP=138;QD=0.681451612903;SC=GAATGATATATCCACAAAAAA;SbPval=0.26;Source=Platypus;TC=18643;TCF=10597;TCR=8046;TR=248;WE=432162;WS=432098 GT:GL:GOF:GQ:NR:NV 1/0:-11.96,0.0,-300.0:31:99:341:3 0/0:0.0,-43.2,-300.0:2:99:147:2 0/0:0.0,-43.83,-300.0:1:99:140:5 0/0:0.0,-25.43,-300.0:1:99:78:2 1/0:-5.85,0.0,-300.0:30:58:272:3 0/0:0.0,-30.26,-300.0:1:99:96:1 0/0:0.0,-45.03,-300.0:2:99:143:3 0/0:0.0,-22.91,-300.0:2:99:76:0 0/0:0.0,-63.36,-300.0:13:99:213:4 0/0:0.0,-108.49,-300.0:24:99:373:3 0/0:0.0,-174.79,-300.0:23:99:580:7 0/0:0.0,-147.77,-300.0:20:99:473:3 0/0:0.0,-163.94,-300.0:20:99:548:8 0/0:0.0,-142.39,-300.0:24:99:505:1 0/0:0.0,-128.41,-300.0:23:99:430:7 0/0:0.0,-205.87,-300.0:19:99:705:5 0/0:0.0,-135.89,-300.0:22:99:474:10 0/0:0.0,-141.72,-300.0:24:99:494:8 0/0:0.0,-169.01,-300.0:18:99:559:9 0/0:0.0,-300.0,-300.0:22:99:1863:20 0/0:0.0,-143.21,-300.0:17:99:476:8 0/0:0.0,-231.84,-300.0:21:99:816:3 0/0:0.0,-134.67,-300.0:21:99:498:3 0/0:0.0,-217.96,-300.0:23:99:757:6 0/0:0.0,-141.46,-300.0:24:99:464:6 0/0:0.0,-109.77,-300.0:21:99:385:3 0/0:0.0,-200.92,-300.0:21:99:678:6 0/0:0.0,-240.13,-300.0:19:99:792:10 0/0:0.0,-37.82,-300.0:13:99:139:3 0/0:0.0,-63.12,-300.0:12:99:214:2 0/0:0.0,-52.73,-300.0:12:99:179:3 0/0:0.0,-52.72,-300.0:12:99:196:7 0/0:0.0,-59.58,-300.0:14:99:200:7 0/0:0.0,-53.88,-300.0:18:99:172:5 0/0:0.0,-26.32,-300.0:13:99:82:3 0/0:0.0,-40.73,-300.0:14:99:143:2 0/0:0.0,-47.29,-300.0:13:99:170:3 0/0:0.0,-58.11,-300.0:18:99:202:6 0/0:0.0,-45.57,-300.0:12:99:163:4 0/0:0.0,-63.13,-300.0:12:99:205:3 0/0:0.0,-45.71,-300.0:14:99:147:3 0/0:0.0,-42.13,-300.0:14:99:146:3 0/0:0.0,-37.06,-300.0:15:99:122:7 0/0:0.0,-64.14,-300.0:12:99:213:5 0/0:0.0,-55.43,-300.0:9:99:178:4 0/0:0.0,-140.86,-300.0:20:99:491:5 0/0:0.0,-126.93,-300.0:26:99:414:5 0/0:0.0,-171.39,-300.0:28:99:596:8 0/0:0.0,-256.89,-300.0:24:99:895:11 chrXII 432141 . C CA 134 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=1;HapScore=1;MGOF=31;MMLQ=12;MQ=59.97;NF=146;NR=102;PP=134;QD=0.681451612903;SC=ATGATATATCCACAAAAAAAA;SbPval=0.26;Source=Platypus;TC=18525;TCF=10511;TCR=8014;TR=248;WE=432162;WS=432098 GT:GL:GOF:GQ:NR:NV 1/0:-11.96,0.0,-300.0:31:99:343:3 0/0:0.0,-43.2,-300.0:2:99:144:2 0/0:0.0,-43.83,-300.0:1:99:134:5 0/0:0.0,-25.43,-280.75:1:99:79:2 1/0:-5.85,0.0,-300.0:30:58:269:3 0/0:0.0,-30.26,-300.0:1:99:92:2 0/0:0.0,-45.03,-300.0:2:99:139:3 0/0:0.0,-22.91,-264.67:2:99:75:0 0/0:0.0,-63.36,-300.0:13:99:212:4 0/0:0.0,-108.49,-300.0:24:99:377:3 0/0:0.0,-174.79,-300.0:23:99:576:7 0/0:0.0,-147.77,-300.0:20:99:471:3 0/0:0.0,-163.94,-300.0:20:99:546:8 0/0:0.0,-142.39,-300.0:24:99:508:1 0/0:0.0,-128.41,-300.0:23:99:427:7 0/0:0.0,-205.87,-300.0:19:99:702:5 0/0:0.0,-135.89,-300.0:22:99:473:10 0/0:0.0,-141.72,-300.0:24:99:490:8 0/0:0.0,-169.01,-300.0:18:99:557:9 0/0:0.0,-300.0,-300.0:22:99:1858:20 0/0:0.0,-143.21,-300.0:17:99:473:8 0/0:0.0,-231.84,-300.0:21:99:806:3 0/0:0.0,-134.67,-300.0:21:99:489:3 0/0:0.0,-217.96,-300.0:23:99:755:6 0/0:0.0,-141.46,-300.0:24:99:464:6 0/0:0.0,-109.77,-300.0:21:99:383:3 0/0:0.0,-200.92,-300.0:21:99:679:6 0/0:0.0,-240.13,-300.0:19:99:791:10 0/0:0.0,-37.82,-300.0:13:99:142:3 0/0:0.0,-63.12,-300.0:12:99:212:2 0/0:0.0,-52.73,-300.0:12:99:179:3 0/0:0.0,-52.72,-300.0:12:99:197:7 0/0:0.0,-59.58,-300.0:14:99:197:7 0/0:0.0,-53.88,-300.0:18:99:171:5 0/0:0.0,-26.32,-284.59:13:99:83:3 0/0:0.0,-40.73,-300.0:14:99:140:2 0/0:0.0,-47.29,-300.0:13:99:167:2 0/0:0.0,-58.11,-300.0:18:99:202:6 0/0:0.0,-45.57,-300.0:12:99:163:4 0/0:0.0,-63.13,-300.0:12:99:198:3 0/0:0.0,-45.71,-300.0:14:99:145:3 0/0:0.0,-42.13,-300.0:14:99:143:3 0/0:0.0,-37.06,-300.0:15:99:121:7 0/0:0.0,-64.14,-300.0:12:99:210:5 0/0:0.0,-55.43,-300.0:9:99:178:4 0/0:0.0,-140.86,-300.0:20:99:483:5 0/0:0.0,-126.93,-300.0:26:99:411:5 0/0:0.0,-171.39,-300.0:28:99:588:8 0/0:0.0,-256.89,-300.0:24:99:883:11 chrXII 432142 . AC A 134 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=3;HapScore=1;MGOF=31;MMLQ=12;MQ=59.96;NF=145;NR=108;PP=134;QD=0.667984189723;SC=TGATATATCCACAAAAAAAAA;SbPval=0.26;Source=Platypus;TC=18576;TCF=10536;TCR=8040;TR=253;WE=432162;WS=432098 GT:GL:GOF:GQ:NR:NV 1/0:-11.96,0.0,-300.0:31:99:348:3 0/0:0.0,-43.2,-300.0:2:99:141:2 0/0:0.0,-43.83,-300.0:1:99:135:5 0/0:0.0,-25.43,-198.02:1:99:75:2 1/0:-5.85,0.0,-300.0:30:58:268:3 0/0:0.0,-30.26,-232.89:1:99:92:2 0/0:0.0,-45.03,-300.0:2:99:138:3 0/0:0.0,-22.91,-191.27:2:99:72:0 0/0:0.0,-63.36,-300.0:13:99:209:4 0/0:0.0,-105.75,-300.0:24:99:383:4 0/0:0.0,-172.74,-300.0:23:99:578:7 0/0:0.0,-147.77,-300.0:20:99:477:3 0/0:0.0,-158.02,-300.0:20:99:547:8 0/0:0.0,-132.82,-300.0:24:99:513:2 0/0:0.0,-123.46,-300.0:23:99:430:7 0/0:0.0,-193.24,-300.0:19:99:703:5 0/0:0.0,-124.8,-300.0:22:99:472:10 0/0:0.0,-136.81,-300.0:24:99:490:8 0/0:0.0,-168.2,-300.0:18:99:557:9 0/0:0.0,-300.0,-300.0:22:99:1870:21 0/0:0.0,-143.21,-300.0:17:99:479:8 0/0:0.0,-227.89,-300.0:21:99:811:3 0/0:0.0,-129.07,-300.0:21:99:490:4 0/0:0.0,-197.73,-300.0:23:99:761:6 0/0:0.0,-136.53,-300.0:24:99:465:6 0/0:0.0,-109.77,-300.0:21:99:384:3 0/0:0.0,-200.91,-300.0:21:99:683:6 0/0:0.0,-224.09,-300.0:19:99:789:10 0/0:0.0,-37.82,-300.0:13:99:142:3 0/0:0.0,-60.33,-300.0:12:99:212:2 0/0:0.0,-52.73,-300.0:12:99:179:3 0/0:0.0,-52.72,-300.0:12:99:196:7 0/0:0.0,-56.87,-300.0:14:99:196:7 0/0:0.0,-53.88,-300.0:18:99:169:5 0/0:0.0,-26.32,-208.07:13:99:83:3 0/0:0.0,-40.73,-300.0:14:99:139:2 0/0:0.0,-47.29,-300.0:13:99:166:2 0/0:0.0,-58.11,-300.0:18:99:204:6 0/0:0.0,-45.57,-300.0:12:99:162:4 0/0:0.0,-63.13,-300.0:12:99:197:3 0/0:0.0,-45.71,-300.0:14:99:145:3 0/0:0.0,-42.13,-300.0:14:99:144:3 0/0:0.0,-37.06,-274.92:15:99:121:7 0/0:0.0,-64.13,-300.0:12:99:210:5 0/0:0.0,-55.43,-300.0:9:99:178:3 0/0:0.0,-125.97,-300.0:20:99:478:6 0/0:0.0,-120.2,-300.0:26:99:417:5 0/0:0.0,-171.39,-300.0:28:99:585:8 0/0:0.0,-236.11,-300.0:24:99:893:12 chrXII 432143 . C CA 161 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=12;HapScore=1;MGOF=31;MMLQ=12;MQ=59.96;NF=140;NR=108;PP=161;QD=0.685483870968;SC=GATATATCCACAAAAAAAAAA;SbPval=0.26;Source=Platypus;TC=19652;TCF=11121;TCR=8531;TR=248;WE=432162;WS=432098 GT:GL:GOF:GQ:NR:NV 1/0:-11.96,0.0,-300.0:31:99:363:3 0/0:0.0,-43.2,-212.62:2:99:148:2 0/0:0.0,-43.83,-230.42:1:99:140:3 0/0:0.0,-25.43,-154.93:1:99:77:1 1/0:-5.85,0.0,-300.0:30:58:283:3 0/0:0.0,-30.26,-166.71:1:99:99:2 0/0:0.0,-45.03,-213.62:2:99:142:2 0/0:0.0,-22.91,-143.63:2:99:73:0 0/0:0.0,-63.36,-300.0:13:99:219:4 0/0:0.0,-105.75,-300.0:24:99:404:4 0/0:0.0,-172.74,-300.0:23:99:613:7 0/0:0.0,-147.77,-300.0:20:99:497:2 0/0:0.0,-158.02,-300.0:20:99:579:8 0/0:0.0,-132.82,-300.0:24:99:558:2 0/0:0.0,-123.46,-300.0:23:99:457:7 0/0:0.0,-193.24,-300.0:19:99:746:5 0/0:0.0,-124.8,-300.0:22:99:501:10 0/0:0.0,-136.81,-300.0:24:99:531:8 0/0:0.0,-168.2,-300.0:18:99:585:9 0/0:0.0,-300.0,-300.0:22:99:1978:21 0/0:0.0,-143.21,-300.0:17:99:508:8 0/0:0.0,-227.89,-300.0:21:99:858:4 0/0:0.0,-129.07,-300.0:21:99:530:4 0/0:0.0,-197.73,-300.0:23:99:794:6 0/0:0.0,-136.53,-300.0:24:99:501:6 0/0:0.0,-109.77,-300.0:21:99:401:3 0/0:0.0,-200.91,-300.0:21:99:726:5 0/0:0.0,-224.09,-300.0:19:99:831:10 0/0:0.0,-37.82,-253.41:13:99:151:3 0/0:0.0,-60.33,-300.0:12:99:222:2 0/0:0.0,-52.73,-292.82:12:99:186:3 0/0:0.0,-52.72,-300.0:12:99:206:7 0/0:0.0,-56.87,-292.52:14:99:203:7 0/0:0.0,-53.88,-280.21:18:99:178:5 0/0:0.0,-26.32,-158.44:14:99:88:3 0/0:0.0,-40.73,-242.15:14:99:150:2 0/0:0.0,-47.29,-270.4:13:99:170:2 0/0:0.0,-58.11,-300.0:18:99:220:6 0/0:0.0,-45.57,-268.1:12:99:169:4 0/0:0.0,-63.13,-300.0:12:99:203:3 0/0:0.0,-45.71,-260.75:14:99:156:3 0/0:0.0,-42.13,-253.57:14:99:155:3 0/0:0.0,-37.06,-216.62:15:99:126:7 0/0:0.0,-64.13,-300.0:12:99:221:5 0/0:0.0,-55.43,-300.0:9:99:191:3 0/0:0.0,-125.97,-300.0:20:99:509:6 0/0:0.0,-120.2,-300.0:26:99:438:6 0/0:0.0,-171.39,-300.0:28:99:616:7 0/0:0.0,-236.11,-300.0:24:99:952:12 chrXII 449606 . TCCTGCTC T 44 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=11;HapScore=1;MGOF=35;MMLQ=12;MQ=59.96;NF=110;NR=148;PP=44;QD=0.193798449612;SC=TTTTTTTTTTTCCTGCTCTTA;SbPval=0.84;Source=Platypus;TC=18905;TCF=7876;TCR=11029;TR=258;WE=449620;WS=449596 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-11.87,-300.0:35:99:338:6 0/0:0.0,-64.0,-300.0:2:99:200:8 0/0:0.0,-45.03,-300.0:1:99:139:2 0/0:0.0,-27.88,-300.0:3:99:87:2 0/1:-5.31,0.0,-300.0:34:53:317:3 0/0:0.0,-28.48,-300.0:2:99:87:3 0/0:0.0,-49.85,-300.0:2:99:156:2 0/0:0.0,-36.91,-300.0:2:99:117:4 0/0:0.0,-57.6,-300.0:19:99:181:2 0/0:0.0,-125.28,-300.0:19:99:410:1 0/0:0.0,-168.69,-300.0:22:99:548:8 0/0:0.0,-146.12,-300.0:19:99:479:3 0/0:0.0,-164.17,-300.0:18:99:542:5 0/0:0.0,-185.28,-300.0:24:99:603:4 0/0:0.0,-132.58,-300.0:21:99:431:4 0/0:0.0,-224.5,-300.0:20:99:734:9 0/0:0.0,-148.9,-300.0:25:99:489:9 0/0:0.0,-147.01,-300.0:25:99:476:13 0/0:0.0,-164.68,-300.0:20:99:536:7 0/0:0.0,-300.0,-300.0:23:99:1794:19 0/0:0.0,-163.59,-300.0:21:99:529:10 0/0:0.0,-268.35,-300.0:21:99:860:9 0/0:0.0,-149.79,-300.0:20:99:491:4 0/0:0.0,-199.97,-300.0:21:99:651:9 0/0:0.0,-146.73,-300.0:20:99:480:3 0/0:0.0,-118.31,-300.0:21:99:383:6 0/0:0.0,-199.92,-300.0:23:99:653:8 0/0:0.0,-255.35,-300.0:19:99:835:8 0/0:0.0,-49.23,-300.0:16:99:160:2 0/0:0.0,-68.44,-300.0:23:99:214:6 0/0:0.0,-49.41,-300.0:20:99:154:6 0/0:0.0,-66.11,-300.0:18:99:214:3 0/0:0.0,-57.98,-300.0:15:99:183:8 0/0:0.0,-55.57,-300.0:16:99:180:4 0/0:0.0,-26.37,-300.0:20:99:81:0 0/0:0.0,-57.77,-300.0:19:99:182:5 0/0:0.0,-60.99,-300.0:20:99:197:5 0/0:0.0,-55.87,-300.0:16:99:173:5 0/0:0.0,-49.61,-300.0:17:99:159:2 0/0:0.0,-66.69,-300.0:17:99:217:1 0/0:0.0,-36.91,-300.0:18:99:117:4 0/0:0.0,-41.72,-300.0:22:99:135:1 0/0:0.0,-37.21,-300.0:22:99:114:2 0/0:0.0,-66.11,-300.0:16:99:217:3 0/0:0.0,-60.09,-300.0:17:99:193:3 0/0:0.0,-138.53,-300.0:22:99:456:3 0/0:0.0,-125.91,-300.0:24:99:407:2 0/0:0.0,-206.59,-300.0:24:99:665:6 0/0:0.0,-289.74,-300.0:23:99:941:16 chrXII 449950 . C CT 146 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=12;HapScore=1;MGOF=42;MMLQ=12;MQ=59.96;NF=99;NR=96;PP=146;QD=0.794871794872;SC=TACTTCGTGTCTTTTTTTTTT;SbPval=0.71;Source=Platypus;TC=19215;TCF=9099;TCR=10116;TR=195;WE=449977;WS=449938 GT:GL:GOF:GQ:NR:NV 0/1:-15.9,0.0,-300.0:42:99:362:2 0/0:0.0,-50.74,-278.18:1:99:194:0 0/0:0.0,-38.06,-203.41:1:99:137:1 0/0:0.0,-21.02,-137.41:1:99:85:2 0/0:0.0,-28.94,-300.0:27:99:381:0 0/0:0.0,-25.41,-157.47:1:99:99:0 0/0:0.0,-39.94,-226.39:2:99:141:5 0/0:0.0,-31.56,-194.66:2:99:128:6 0/0:0.0,-42.26,-286.85:12:99:189:8 0/0:0.0,-103.37,-300.0:17:99:439:4 0/0:0.0,-131.03,-300.0:18:99:526:4 0/0:0.0,-126.19,-300.0:16:99:471:1 0/0:0.0,-148.41,-300.0:19:99:547:7 0/0:0.0,-154.58,-300.0:25:99:613:5 0/0:0.0,-113.97,-300.0:19:99:432:4 0/0:0.0,-174.78,-300.0:17:99:721:2 0/0:0.0,-126.61,-300.0:20:99:525:7 0/0:0.0,-129.64,-300.0:17:99:492:2 0/0:0.0,-147.0,-300.0:17:99:535:2 0/0:0.0,-300.0,-300.0:18:99:1779:18 0/0:0.0,-135.66,-300.0:21:99:505:4 0/0:0.0,-211.34,-300.0:17:99:853:8 0/0:0.0,-129.22,-300.0:19:99:512:3 0/0:0.0,-181.83,-300.0:19:99:704:7 0/0:0.0,-123.52,-300.0:20:99:466:3 0/0:0.0,-108.16,-300.0:16:99:398:1 0/0:0.0,-169.98,-300.0:18:99:641:1 0/0:0.0,-213.49,-300.0:22:99:777:5 0/0:0.0,-48.08,-300.0:14:99:196:5 0/0:0.0,-58.88,-300.0:9:99:211:3 0/0:0.0,-41.0,-278.37:12:99:164:1 0/0:0.0,-50.36,-300.0:9:99:196:5 0/0:0.0,-41.5,-258.11:10:99:166:3 0/0:0.0,-46.32,-300.0:12:99:206:5 0/0:0.0,-28.87,-185.9:11:99:108:0 0/0:0.0,-48.5,-300.0:10:99:194:5 0/0:0.0,-59.02,-300.0:7:99:235:5 0/0:0.0,-37.88,-278.46:12:99:167:2 0/0:0.0,-37.01,-251.35:13:99:164:10 0/0:0.0,-59.88,-300.0:13:99:237:7 0/0:0.0,-33.5,-236.7:11:99:125:2 0/0:0.0,-39.07,-253.2:12:99:150:2 0/0:0.0,-35.11,-231.66:12:99:130:4 0/0:0.0,-52.35,-300.0:14:99:237:6 0/0:0.0,-47.92,-300.0:9:99:216:4 0/0:0.0,-117.23,-300.0:20:99:481:3 0/0:0.0,-117.7,-300.0:18:99:452:1 0/0:0.0,-161.18,-300.0:21:99:636:6 0/0:0.0,-222.33,-300.0:20:99:892:4 chrXII 449961 . TC T 146 QD;alleleBias BRF=0.02;FR=0.0102;HP=10;HapScore=1;MGOF=42;MMLQ=27;MQ=59.97;NF=98;NR=98;PP=146;QD=0.790816326531;SC=TTTTTTTTTTTCTATGTACTT;SbPval=0.7;Source=Platypus;TC=18089;TCF=8534;TCR=9555;TR=196;WE=449977;WS=449938 GT:GL:GOF:GQ:NR:NV 0/1:-15.9,0.0,-300.0:42:99:330:2 0/0:0.0,-50.74,-300.0:1:99:181:0 0/0:0.0,-38.06,-300.0:1:99:133:2 0/0:0.0,-21.02,-232.97:1:99:73:2 0/0:0.0,-28.94,-300.0:27:99:339:0 0/0:0.0,-25.41,-261.47:1:99:82:0 0/0:0.0,-39.94,-300.0:2:99:131:6 0/0:0.0,-31.56,-300.0:2:99:120:6 0/0:0.0,-42.26,-300.0:12:99:176:8 0/0:0.0,-103.37,-300.0:17:99:414:4 0/0:0.0,-131.03,-300.0:18:99:488:4 0/0:0.0,-126.19,-300.0:16:99:450:1 0/0:0.0,-148.41,-300.0:19:99:525:7 0/0:0.0,-154.58,-300.0:25:99:573:5 0/0:0.0,-113.97,-300.0:19:99:399:4 0/0:0.0,-174.78,-300.0:17:99:656:2 0/0:0.0,-126.61,-300.0:20:99:498:7 0/0:0.0,-129.64,-300.0:17:99:461:2 0/0:0.0,-147.0,-300.0:17:99:507:2 0/0:0.0,-300.0,-300.0:18:99:1682:18 0/0:0.0,-135.66,-300.0:21:99:482:4 0/0:0.0,-211.34,-300.0:17:99:794:8 0/0:0.0,-129.22,-300.0:19:99:485:3 0/0:0.0,-181.83,-300.0:19:99:668:7 0/0:0.0,-123.52,-300.0:20:99:435:3 0/0:0.0,-108.16,-300.0:16:99:376:1 0/0:0.0,-169.98,-300.0:18:99:610:1 0/0:0.0,-213.49,-300.0:22:99:735:5 0/0:0.0,-48.08,-300.0:14:99:190:5 0/0:0.0,-58.88,-300.0:9:99:206:3 0/0:0.0,-41.0,-300.0:12:99:158:1 0/0:0.0,-50.36,-300.0:9:99:187:5 0/0:0.0,-41.5,-300.0:10:99:153:3 0/0:0.0,-46.32,-300.0:12:99:196:5 0/0:0.0,-28.87,-300.0:11:99:103:0 0/0:0.0,-48.5,-300.0:10:99:192:5 0/0:0.0,-59.02,-300.0:7:99:225:5 0/0:0.0,-37.88,-300.0:12:99:160:2 0/0:0.0,-37.01,-300.0:13:99:161:10 0/0:0.0,-59.88,-300.0:13:99:224:7 0/0:0.0,-33.5,-300.0:11:99:125:2 0/0:0.0,-39.07,-300.0:12:99:143:2 0/0:0.0,-35.11,-300.0:12:99:125:4 0/0:0.0,-52.35,-300.0:14:99:229:6 0/0:0.0,-47.92,-300.0:9:99:205:4 0/0:0.0,-117.23,-300.0:20:99:443:2 0/0:0.0,-117.7,-300.0:18:99:423:1 0/0:0.0,-161.18,-300.0:21:99:606:6 0/0:0.0,-222.33,-300.0:20:99:832:4 chrXII 451539 . G A 2965 badReads;MQ;alleleBias BRF=0.94;FR=0.4198;HP=16;HapScore=1;MGOF=36;MMLQ=12;MQ=10.3;NF=8;NR=2234;PP=2965;QD=20;SC=TCTTTGCAACGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=12486;TCF=1323;TCR=11163;TR=2242;WE=451564;WS=451481 GT:GL:GOF:GQ:NR:NV 1/0:-84.74,0.0,-107.13:29:99:167:57 0/0:0.0,-12.22,-112.08:1:99:68:2 0/0:0.0,-12.0,-112.08:3:99:56:5 0/0:0.0,-4.48,-44.18:2:45:21:1 1/0:-101.73,0.0,-144.92:36:99:182:64 0/0:0.0,-9.29,-84.48:4:93:50:2 0/0:0.0,-11.06,-96.18:1:99:54:1 0/0:0.0,-9.5,-75.78:1:95:47:2 1/0:-2.88,0.0,-173.66:21:29:107:18 1/0:-4.39,0.0,-300.0:26:44:278:42 1/0:-17.85,0.0,-300.0:23:99:348:60 1/0:-32.3,0.0,-300.0:28:99:321:61 1/0:-31.89,0.0,-300.0:29:99:414:66 1/0:-20.85,0.0,-300.0:29:99:380:58 1/0:-14.46,0.0,-300.0:26:99:284:43 1/0:-50.71,0.0,-300.0:27:99:545:100 1/0:-25.67,0.0,-300.0:29:99:341:63 1/0:-35.68,0.0,-300.0:29:99:398:73 1/0:-19.4,0.0,-300.0:25:99:442:67 1/0:-119.04,0.0,-300.0:29:99:1228:232 1/0:-40.94,0.0,-300.0:28:99:368:69 1/0:-37.22,0.0,-300.0:26:99:650:106 1/0:-25.86,0.0,-300.0:30:99:351:64 1/0:-35.36,0.0,-300.0:28:99:533:93 1/0:-30.9,0.0,-300.0:28:99:313:62 1/0:-28.17,0.0,-300.0:29:99:324:58 1/0:-7.82,0.0,-300.0:28:78:420:63 1/0:-54.75,0.0,-300.0:29:99:629:112 1/0:-13.94,0.0,-62.02:29:99:57:19 1/0:-17.05,0.0,-68.43:26:99:70:18 1/0:-6.22,0.0,-74.6:18:62:55:12 1/0:-1.83,0.0,-136.01:22:18:98:15 1/0:-10.48,0.0,-110.86:24:99:83:20 1/0:-14.39,0.0,-75.77:26:99:64:18 0/0:0.0,-1.44,-30.68:17:15:21:3 1/0:-11.01,0.0,-87.69:27:99:68:15 1/0:-1.74,0.0,-135.42:21:17:92:16 0/0:0.0,-0.76,-87.08:27:8:56:10 1/0:-13.24,0.0,-113.82:24:99:86:23 1/0:-1.99,0.0,-92.96:31:20:74:14 1/0:-7.76,0.0,-57.74:31:78:54:13 1/0:-5.96,0.0,-83.74:17:60:65:14 1/0:-2.89,0.0,-52.67:25:29:42:8 1/0:-14.05,0.0,-57.54:20:99:72:18 1/0:-4.57,0.0,-71.86:22:46:57:10 1/0:-4.27,0.0,-300.0:27:43:369:55 1/0:-11.32,0.0,-300.0:25:99:380:58 1/0:-41.76,0.0,-300.0:27:99:579:105 1/0:-59.95,0.0,-300.0:27:99:725:134 chrXII 459795 . C CT 2973 badReads;alleleBias BRF=0.08;FR=0.2347;HP=4;HapScore=1;MGOF=31;MMLQ=12;MQ=55.28;NF=3908;NR=14064;PP=2973;QD=20;SC=GTGCTGCAATCTTTATTTCTT;SbPval=1.0;Source=Platypus;TC=1047606;TCF=453961;TCR=593645;TR=17972;WE=459985;WS=459734 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-299.77,-300.0:31:99:11852:63 0/0:0.0,-299.42,-300.0:2:99:11667:176 0/0:0.0,-299.42,-300.0:1:99:4353:73 0/0:0.0,-299.42,-300.0:1:99:6587:103 0/0:0.0,-299.77,-300.0:31:99:25372:189 0/0:0.0,-299.42,-300.0:1:99:7220:116 0/0:0.0,-299.42,-300.0:2:99:10303:155 0/0:0.0,-299.42,-300.0:2:99:8353:146 0/0:0.0,-244.79,-300.0:24:99:5891:82 0/1:-299.57,0.0,-300.0:28:99:36356:698 0/1:-299.57,0.0,-300.0:29:99:49475:908 0/1:-299.57,0.0,-300.0:30:99:21170:331 0/1:-299.57,0.0,-300.0:28:99:34112:628 0/1:-299.57,0.0,-300.0:29:99:23912:353 0/1:-299.57,0.0,-300.0:30:99:20327:320 0/1:-299.57,0.0,-300.0:29:99:27521:539 0/1:-299.57,0.0,-300.0:29:99:44836:783 0/1:-299.57,0.0,-300.0:29:99:23845:424 0/1:-299.57,0.0,-300.0:28:99:29428:522 0/1:-299.57,0.0,-300.0:29:99:65650:1080 0/1:-299.57,0.0,-300.0:29:99:19397:292 0/1:-299.57,0.0,-300.0:29:99:71410:1143 0/1:-299.57,0.0,-300.0:30:99:40122:795 0/1:-299.57,0.0,-300.0:30:99:68000:1300 0/1:-299.57,0.0,-300.0:29:99:14224:285 0/1:-299.57,0.0,-300.0:29:99:15577:270 0/1:-299.57,0.0,-300.0:29:99:21865:365 0/1:-299.57,0.0,-300.0:29:99:30340:581 0/0:0.0,-299.89,-300.0:25:99:3652:45 0/0:0.0,-299.89,-300.0:26:99:3324:39 0/0:0.0,-211.65,-300.0:25:99:3508:35 0/0:0.0,-175.95,-300.0:25:99:2425:28 0/0:0.0,-299.89,-300.0:25:99:3924:50 0/0:0.0,-167.54,-300.0:25:99:1938:26 0/0:0.0,-17.7,-300.0:24:99:847:13 0/0:0.0,-157.15,-300.0:25:99:2736:39 0/0:0.0,-223.69,-300.0:24:99:3284:38 0/0:0.0,-193.1,-300.0:24:99:3769:51 0/0:0.0,-117.51,-300.0:24:99:3218:44 0/0:0.0,-89.37,-300.0:24:99:3155:48 0/0:0.0,-98.06,-300.0:25:99:2803:42 0/0:0.0,-145.01,-300.0:24:99:3272:41 0/0:0.0,-120.99,-300.0:24:99:2383:35 0/0:0.0,-299.89,-300.0:26:99:4585:50 0/0:0.0,-231.32,-300.0:25:99:3305:42 0/1:-299.57,0.0,-300.0:28:99:49063:888 0/1:-299.57,0.0,-300.0:30:99:43015:784 0/1:-299.57,0.0,-300.0:31:99:61963:1182 0/1:-299.57,0.0,-300.0:31:99:92272:1732 chrXII 459798 . TA T 2973 badReads;alleleBias BRF=0.08;FR=0.2347;HP=2;HapScore=1;MGOF=31;MMLQ=12;MQ=56.08;NF=4020;NR=15252;PP=2973;QD=20;SC=CTGCAATCTTTATTTCTTTTT;SbPval=1.0;Source=Platypus;TC=1030130;TCF=450270;TCR=579860;TR=19272;WE=459985;WS=459734 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-299.77,-300.0:31:99:11798:68 0/0:0.0,-299.42,-300.0:2:99:11716:307 0/0:0.0,-299.42,-300.0:1:99:4450:129 0/0:0.0,-299.42,-300.0:1:99:6604:179 0/0:0.0,-299.77,-300.0:31:99:25238:211 0/0:0.0,-299.42,-300.0:1:99:7385:235 0/0:0.0,-299.42,-300.0:2:99:10498:290 0/0:0.0,-299.42,-300.0:2:99:8449:246 0/0:0.0,-244.79,-300.0:24:99:5510:89 0/1:-299.57,0.0,-300.0:28:99:35784:726 0/1:-299.57,0.0,-300.0:29:99:48656:940 0/1:-299.57,0.0,-300.0:30:99:20773:341 0/1:-299.57,0.0,-300.0:28:99:33572:657 0/1:-299.57,0.0,-300.0:29:99:23542:370 0/1:-299.57,0.0,-300.0:30:99:20016:329 0/1:-299.57,0.0,-300.0:29:99:27040:560 0/1:-299.57,0.0,-300.0:29:99:44068:816 0/1:-299.57,0.0,-300.0:29:99:23469:443 0/1:-299.57,0.0,-300.0:28:99:28948:542 0/1:-299.57,0.0,-300.0:29:99:64443:1124 0/1:-299.57,0.0,-300.0:29:99:19089:306 0/1:-299.57,0.0,-300.0:29:99:70237:1190 0/1:-299.57,0.0,-300.0:30:99:39446:826 0/1:-299.57,0.0,-300.0:30:99:66860:1355 0/1:-299.57,0.0,-300.0:29:99:14004:296 0/1:-299.57,0.0,-300.0:29:99:15370:276 0/1:-299.57,0.0,-300.0:29:99:21508:381 0/1:-299.57,0.0,-300.0:29:99:29768:606 0/0:0.0,-299.89,-300.0:25:99:3542:47 0/0:0.0,-299.89,-300.0:26:99:3246:41 0/0:0.0,-211.65,-300.0:25:99:3324:38 0/0:0.0,-175.95,-300.0:25:99:2296:30 0/0:0.0,-299.89,-300.0:25:99:3719:52 0/0:0.0,-167.54,-300.0:25:99:1825:27 0/0:0.0,-17.7,-300.0:24:99:789:13 0/0:0.0,-157.15,-300.0:25:99:2586:39 0/0:0.0,-223.69,-300.0:24:99:3122:39 0/0:0.0,-193.1,-300.0:24:99:3560:54 0/0:0.0,-117.51,-300.0:24:99:3010:45 0/0:0.0,-89.37,-300.0:24:99:2989:50 0/0:0.0,-98.06,-300.0:25:99:2659:43 0/0:0.0,-145.01,-300.0:24:99:3042:41 0/0:0.0,-120.99,-300.0:24:99:2254:35 0/0:0.0,-299.89,-300.0:26:99:4455:54 0/0:0.0,-231.32,-300.0:25:99:3256:41 0/1:-299.57,0.0,-300.0:28:99:48290:924 0/1:-299.57,0.0,-300.0:30:99:42340:817 0/1:-299.57,0.0,-300.0:31:99:60921:1211 0/1:-299.57,0.0,-300.0:31:99:90664:1793 chrXII 459803 . C CT 3000 badReads;strandBias;alleleBias BRF=0.08;FR=0.3061;HP=23;HapScore=1;MGOF=31;MMLQ=12;MQ=56.96;NF=7460;NR=17644;PP=3000;QD=20;SC=ATCTTTATTTCTTTTTTTTTT;SbPval=0.0;Source=Platypus;TC=1239595;TCF=586435;TCR=653160;TR=25104;WE=459985;WS=459734 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-56.63,-300.0:31:99:13860:162 1/1:-299.29,-70.25,0.0:2:99:14520:286 1/1:-166.55,-27.58,0.0:1:99:5383:123 1/1:-249.95,-43.82,0.0:1:99:7834:164 0/0:0.0,-43.9,-300.0:31:99:29563:424 1/1:-288.65,-50.5,0.0:1:99:8791:231 1/1:-299.29,-63.0,0.0:2:99:13022:277 1/1:-281.75,-42.05,0.0:2:99:9903:234 0/1:-105.77,0.0,-113.92:24:99:8232:109 0/0:0.0,-299.71,-300.0:28:99:42353:942 0/0:0.0,-299.71,-300.0:29:99:57148:1231 0/0:0.0,-299.71,-300.0:30:99:24859:479 0/0:0.0,-299.71,-300.0:28:99:39956:828 0/0:0.0,-299.71,-300.0:29:99:28418:515 0/0:0.0,-299.71,-300.0:30:99:23662:476 0/0:0.0,-299.71,-300.0:29:99:32254:733 0/0:0.0,-299.71,-300.0:29:99:51795:1002 0/0:0.0,-299.71,-300.0:29:99:28096:584 0/0:0.0,-299.71,-300.0:28:99:34030:688 0/0:0.0,-299.71,-300.0:29:99:78090:1600 0/0:0.0,-299.71,-300.0:29:99:22510:413 0/0:0.0,-299.71,-300.0:29:99:81928:1571 0/0:0.0,-299.71,-300.0:30:99:48316:1135 0/0:0.0,-299.71,-300.0:30:99:80551:1902 0/0:0.0,-299.71,-300.0:29:99:16686:366 0/0:0.0,-299.71,-300.0:29:99:18156:370 0/0:0.0,-299.71,-300.0:29:99:25877:528 0/0:0.0,-299.71,-300.0:29:99:35184:809 0/1:-116.54,0.0,-52.99:25:99:4946:72 0/1:-167.49,0.0,-44.34:26:99:4051:54 0/1:-70.99,0.0,-69.24:25:99:4920:42 0/1:-71.33,0.0,-38.38:25:99:3655:37 0/1:-93.02,0.0,-61.47:25:99:5623:63 0/1:-46.54,0.0,-26.59:25:99:2803:34 0/1:-14.54,0.0,-18.09:24:99:1226:17 0/1:-44.31,0.0,-53.37:25:99:4030:53 0/1:-88.94,0.0,-50.09:24:99:4883:53 0/1:-35.15,0.0,-82.8:24:99:5273:63 0/1:-49.68,0.0,-70.93:24:99:4569:54 0/1:-69.01,0.0,-54.66:24:99:4363:53 0/1:-31.27,0.0,-56.02:25:99:3683:49 0/1:-48.17,0.0,-62.92:24:99:4652:52 0/1:-21.73,0.0,-58.18:24:99:3647:46 0/1:-140.06,0.0,-68.91:26:99:6060:72 0/1:-127.12,0.0,-50.17:25:99:4058:46 0/0:0.0,-299.71,-300.0:28:99:56705:1184 0/0:0.0,-299.71,-300.0:30:99:49826:1046 0/0:0.0,-299.71,-300.0:31:99:72856:1585 0/0:0.0,-299.71,-300.0:31:99:106789:2247 chrXII 460001 . AC A 2957 badReads;alleleBias BRF=0.03;FR=0.0204;HP=1;HapScore=1;MGOF=28;MMLQ=12;MQ=59.72;NF=17430;NR=9113;PP=2957;QD=20;SC=CGATATTCCTACAAAAAAAAA;SbPval=0.35;Source=Platypus;TC=959224;TCF=551803;TCR=407421;TR=26543;WE=460189;WS=460000 GT:GL:GOF:GQ:NR:NV 1/0:-298.62,0.0,-300.0:28:99:11217:177 0/0:0.0,-300.0,-300.0:1:99:8654:776 0/0:0.0,-300.0,-300.0:1:99:3359:304 0/0:0.0,-300.0,-300.0:1:99:5295:535 1/0:-298.62,0.0,-300.0:27:99:23962:356 0/0:0.0,-300.0,-300.0:1:99:5559:543 0/0:0.0,-300.0,-300.0:2:99:7945:776 0/0:0.0,-300.0,-300.0:1:99:6401:608 0/0:0.0,-300.0,-300.0:18:99:8736:237 0/0:0.0,-300.0,-300.0:25:99:31593:768 0/0:0.0,-300.0,-300.0:25:99:44105:1087 0/0:0.0,-300.0,-300.0:26:99:18214:416 0/0:0.0,-300.0,-300.0:25:99:29519:690 0/0:0.0,-300.0,-300.0:27:99:21019:480 0/0:0.0,-300.0,-300.0:26:99:17115:437 0/0:0.0,-300.0,-300.0:25:99:24382:606 0/0:0.0,-300.0,-300.0:25:99:37945:887 0/0:0.0,-300.0,-300.0:25:99:21144:492 0/0:0.0,-300.0,-300.0:24:99:24639:690 0/0:0.0,-300.0,-300.0:26:99:57908:1390 0/0:0.0,-300.0,-300.0:25:99:17132:437 0/0:0.0,-300.0,-300.0:26:99:61873:1566 0/0:0.0,-300.0,-300.0:26:99:36784:954 0/0:0.0,-300.0,-300.0:26:99:60844:1548 0/0:0.0,-300.0,-300.0:26:99:12087:279 0/0:0.0,-300.0,-300.0:25:99:14193:392 0/0:0.0,-300.0,-300.0:26:99:18851:430 0/0:0.0,-300.0,-300.0:25:99:26071:613 0/0:0.0,-300.0,-300.0:18:99:6192:182 0/0:0.0,-300.0,-300.0:16:99:7380:213 0/0:0.0,-300.0,-300.0:17:99:5896:168 0/0:0.0,-300.0,-300.0:17:99:4117:117 0/0:0.0,-300.0,-300.0:17:99:6688:201 0/0:0.0,-300.0,-300.0:18:99:3174:135 0/0:0.0,-172.12,-300.0:19:99:1233:31 0/0:0.0,-300.0,-300.0:19:99:4230:127 0/0:0.0,-300.0,-300.0:18:99:5488:153 0/0:0.0,-300.0,-300.0:18:99:5611:142 0/0:0.0,-300.0,-300.0:19:99:4794:152 0/0:0.0,-300.0,-300.0:19:99:4651:171 0/0:0.0,-300.0,-300.0:21:99:3797:123 0/0:0.0,-300.0,-300.0:20:99:4781:132 0/0:0.0,-300.0,-300.0:19:99:3837:91 0/0:0.0,-300.0,-300.0:19:99:8133:231 0/0:0.0,-300.0,-300.0:16:99:6523:214 0/0:0.0,-300.0,-300.0:26:99:42627:1026 0/0:0.0,-300.0,-300.0:26:99:37353:952 0/0:0.0,-300.0,-300.0:27:99:55102:1385 0/0:0.0,-300.0,-300.0:27:99:81071:2123 chrXII 460002 . C CA 3000 badReads;alleleBias BRF=0.03;FR=0.0204;HP=18;HapScore=1;MGOF=28;MMLQ=12;MQ=59.72;NF=16068;NR=9612;PP=3000;QD=20;SC=GATATTCCTACAAAAAAAAAA;SbPval=0.47;Source=Platypus;TC=1094735;TCF=610137;TCR=484598;TR=25680;WE=460189;WS=460000 GT:GL:GOF:GQ:NR:NV 1/0:-298.62,0.0,-300.0:28:99:12808:182 0/0:0.0,-300.0,-300.0:1:99:9078:520 0/0:0.0,-300.0,-300.0:1:99:3555:186 0/0:0.0,-300.0,-300.0:1:99:5293:327 1/0:-298.62,0.0,-300.0:27:99:27534:363 0/0:0.0,-300.0,-300.0:1:99:5625:351 0/0:0.0,-300.0,-300.0:2:99:8257:490 0/0:0.0,-300.0,-300.0:1:99:6539:411 0/0:0.0,-300.0,-300.0:18:99:9878:242 0/0:0.0,-300.0,-300.0:25:99:36527:780 0/0:0.0,-300.0,-300.0:25:99:50745:1112 0/0:0.0,-300.0,-300.0:26:99:20883:427 0/0:0.0,-300.0,-300.0:25:99:33961:710 0/0:0.0,-300.0,-300.0:27:99:24147:494 0/0:0.0,-300.0,-300.0:26:99:19687:448 0/0:0.0,-300.0,-300.0:25:99:27901:618 0/0:0.0,-300.0,-300.0:25:99:43911:902 0/0:0.0,-300.0,-300.0:25:99:24227:495 0/0:0.0,-300.0,-300.0:24:99:28455:693 0/0:0.0,-300.0,-300.0:26:99:66130:1418 0/0:0.0,-300.0,-300.0:25:99:19672:447 0/0:0.0,-300.0,-300.0:26:99:71263:1597 0/0:0.0,-300.0,-300.0:26:99:42192:963 0/0:0.0,-300.0,-300.0:26:99:69686:1581 0/0:0.0,-300.0,-300.0:26:99:13868:288 0/0:0.0,-300.0,-300.0:25:99:16281:400 0/0:0.0,-300.0,-300.0:26:99:21680:432 0/0:0.0,-300.0,-300.0:25:99:30153:620 0/0:0.0,-300.0,-300.0:18:99:6742:185 0/0:0.0,-300.0,-300.0:16:99:7828:209 0/0:0.0,-300.0,-300.0:17:99:6493:167 0/0:0.0,-300.0,-300.0:17:99:4554:114 0/0:0.0,-300.0,-300.0:17:99:7372:195 0/0:0.0,-300.0,-300.0:18:99:3546:136 0/0:0.0,-172.12,-300.0:19:99:1391:33 0/0:0.0,-300.0,-300.0:19:99:4795:128 0/0:0.0,-300.0,-300.0:18:99:6115:152 0/0:0.0,-300.0,-300.0:18:99:6201:145 0/0:0.0,-300.0,-300.0:19:99:5316:152 0/0:0.0,-300.0,-300.0:19:99:5092:172 0/0:0.0,-300.0,-300.0:21:99:4146:121 0/0:0.0,-300.0,-300.0:20:99:5303:132 0/0:0.0,-300.0,-300.0:19:99:4252:89 0/0:0.0,-300.0,-300.0:19:99:8796:232 0/0:0.0,-300.0,-300.0:16:99:6961:216 0/0:0.0,-300.0,-300.0:26:99:48946:1051 0/0:0.0,-300.0,-300.0:26:99:43463:975 0/0:0.0,-300.0,-300.0:27:99:63574:1403 0/0:0.0,-300.0,-300.0:27:99:93913:2176 chrXII 460674 . AC A 2951 badReads;MQ;alleleBias BRF=0.18;FR=0.2041;HP=1;HapScore=1;MGOF=24;MMLQ=14;MQ=39.11;NF=1096;NR=13643;PP=2951;QD=20;SC=CATCTTTGCAACGAAAAAAAA;SbPval=1.0;Source=Platypus;TC=685738;TCF=83979;TCR=601759;TR=14739;WE=460732;WS=460534 GT:GL:GOF:GQ:NR:NV 1/0:-299.56,0.0,-300.0:22:99:7580:300 0/0:0.0,-299.99,-300.0:1:99:7589:459 0/0:0.0,-299.99,-300.0:1:99:2733:148 0/0:0.0,-299.99,-300.0:1:99:3833:226 1/0:-299.56,0.0,-300.0:21:99:16469:657 0/0:0.0,-299.99,-300.0:1:99:4484:256 0/0:0.0,-299.99,-300.0:1:99:6528:357 0/0:0.0,-299.99,-300.0:1:99:4841:300 1/0:-299.56,0.0,-300.0:19:99:8609:201 0/0:0.0,-299.91,-300.0:22:99:22494:411 0/0:0.0,-299.91,-300.0:23:99:29729:552 0/0:0.0,-299.91,-300.0:23:99:12314:217 0/0:0.0,-299.91,-300.0:23:99:21413:354 0/0:0.0,-299.91,-300.0:24:99:14598:259 0/0:0.0,-299.91,-300.0:23:99:12421:236 0/0:0.0,-299.91,-300.0:23:99:16915:322 0/0:0.0,-299.91,-300.0:23:99:27564:476 0/0:0.0,-299.91,-300.0:22:99:14667:244 0/0:0.0,-299.91,-300.0:22:99:18406:366 0/0:0.0,-299.91,-300.0:23:99:40118:734 0/0:0.0,-299.91,-300.0:23:99:11803:224 0/0:0.0,-299.91,-300.0:23:99:43468:795 0/0:0.0,-299.91,-300.0:23:99:26418:473 0/0:0.0,-299.91,-300.0:23:99:41587:758 0/0:0.0,-299.91,-300.0:24:99:8603:153 0/0:0.0,-299.91,-300.0:22:99:9810:156 0/0:0.0,-299.91,-300.0:24:99:14025:264 0/0:0.0,-299.91,-300.0:23:99:17891:310 1/0:-299.43,0.0,-300.0:18:99:4123:129 1/0:-299.56,0.0,-300.0:18:99:4057:126 1/0:-299.56,0.0,-300.0:19:99:4765:133 1/0:-187.61,0.0,-300.0:20:99:3905:101 1/0:-299.56,0.0,-300.0:19:99:5540:112 1/0:-147.61,0.0,-300.0:19:99:2771:88 1/0:-40.6,0.0,-300.0:20:99:1157:31 1/0:-169.05,0.0,-300.0:20:99:3703:98 1/0:-257.61,0.0,-300.0:19:99:4955:131 1/0:-267.04,0.0,-300.0:19:99:4398:104 1/0:-251.63,0.0,-300.0:20:99:4470:108 1/0:-207.17,0.0,-300.0:18:99:3805:101 1/0:-140.27,0.0,-300.0:20:99:3030:64 1/0:-239.33,0.0,-300.0:20:99:4155:95 1/0:-103.06,0.0,-300.0:19:99:3294:89 1/0:-299.56,0.0,-300.0:18:99:5555:167 1/0:-299.56,0.0,-300.0:18:99:3828:134 0/0:0.0,-299.91,-300.0:22:99:30397:513 0/0:0.0,-299.91,-300.0:23:99:25719:474 0/0:0.0,-299.91,-300.0:23:99:38600:683 0/0:0.0,-299.91,-300.0:23:99:56601:1050 chrXII 460676 . GA AA,GAA 3000 badReads;MQ;alleleBias BRF=0.18;FR=0.4388,0.2041;HP=16;HapScore=1;MGOF=24;MMLQ=12;MQ=39.08;NF=409,1046;NR=140362,14347;PP=2965,3000;QD=20;SC=TCTTTGCAACGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=866366;TCF=95428;TCR=770938;TR=140771,15393;WE=460732;WS=460534 GT:GL:GOF:GQ:NR:NV 1/0:-1,-1,-1:22:3:9552,8020:3103,301 0/0:-1,-1,-1:1:99:10191,8553:611,472 0/0:-1,-1,-1:1:99:3644,2988:244,152 0/0:-1,-1,-1:1:99:5227,4238:312,236 1/0:-1,-1,-1:21:3:20690,17476:6502,656 0/0:-1,-1,-1:1:99:6022,5014:358,263 0/0:-1,-1,-1:1:99:8822,7327:555,365 0/0:-1,-1,-1:1:99:6686,5498:408,308 1/0:-1,-1,-1:19:3:9884,8898:1792,202 1/0:-1,-1,-1:22:99:28754,24494:4427,428 1/0:-1,-1,-1:23:99:37915,32225:5978,594 1/0:-1,-1,-1:23:99:15523,13254:2462,226 1/0:-1,-1,-1:23:99:26958,23108:4210,386 1/0:-1,-1,-1:24:99:18443,15944:2882,275 1/0:-1,-1,-1:23:99:15871,13419:2517,244 1/0:-1,-1,-1:23:99:21385,18188:3311,348 1/0:-1,-1,-1:23:99:35014,30118:5329,506 1/0:-1,-1,-1:22:99:18633,15831:3126,261 1/0:-1,-1,-1:22:99:23325,19816:3670,382 1/0:-1,-1,-1:23:99:50990,43608:8114,790 1/0:-1,-1,-1:23:99:15146,12759:2434,235 1/0:-1,-1,-1:23:99:55921,47169:8772,836 1/0:-1,-1,-1:23:99:33379,28641:5038,494 1/0:-1,-1,-1:23:99:52800,44867:8457,789 1/0:-1,-1,-1:24:99:10817,9349:1664,163 1/0:-1,-1,-1:22:99:12524,10498:1921,166 1/0:-1,-1,-1:24:99:17758,15159:2648,275 1/0:-1,-1,-1:23:99:22580,19357:3670,317 1/0:-1,-1,-1:18:3:4894,4375:1058,129 1/0:-1,-1,-1:18:3:4924,4270:1263,125 1/0:-1,-1,-1:19:3:5415,4937:1038,132 1/0:-1,-1,-1:20:3:4430,4004:854,102 1/0:-1,-1,-1:19:3:6219,5713:1210,112 1/0:-1,-1,-1:19:3:3166,2865:620,88 1/0:-1,-1,-1:20:3:1316,1198:268,31 1/0:-1,-1,-1:20:3:4278,3857:855,97 1/0:-1,-1,-1:19:3:5752,5151:1085,131 1/0:-1,-1,-1:19:3:5036,4583:1061,104 1/0:-1,-1,-1:20:3:5209,4671:1023,108 1/0:-1,-1,-1:18:3:4390,3962:879,101 1/0:-1,-1,-1:20:3:3531,3216:716,63 1/0:-1,-1,-1:20:3:4768,4312:906,95 1/0:-1,-1,-1:19:3:3751,3416:694,88 1/0:-1,-1,-1:18:3:6729,5981:1628,171 1/0:-1,-1,-1:18:3:4627,4061:1167,135 1/0:-1,-1,-1:22:99:38593,33105:5948,557 1/0:-1,-1,-1:23:99:32856,27907:5102,502 1/0:-1,-1,-1:23:99:49231,41792:7688,730 1/0:-1,-1,-1:23:99:72797,61604:11193,1122 chrXII 468207 . CATCACACAAA TATCACACAAG 417 badReads;MQ BRF=1.0;FR=0.7740;HP=1;HapScore=2;MGOF=46;MMLQ=35;MQ=0.12;NF=5;NR=0;PP=417;QD=94.0935749724;SC=AATGTAAAATCATCACACAAA;SbPval=1.0;Source=Platypus;TC=7;TCF=6;TCR=1;TR=5;WE=468225;WS=468197 GT:GL:GOF:GQ:NR:NV ./.:-1.07,-0.23,0.0:0:4:0:0 ./.:-6.87,-0.53,0.0:17:6:1:1 ./.:0,0,0:0:0:0:0 ./.:-4.77,-0.53,0.0:0:6:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:-9.17,-0.53,0.0:0:6:1:1 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:-1.07,-0.23,0.0:0:4:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:-12.07,-0.84,0.0:16:9:1:1 ./.:0,0,0:0:0:0:0 1/1:-17.47,-0.84,0.0:0:9:2:2 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:-5.17,-0.53,0.0:0:6:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:-0.53,0.0,-2.47:28:6:1:0 ./.:-0.53,0.0,-7.07:46:6:1:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 chrXII 468386 . C A 2965 badReads;MQ BRF=1.0;FR=0.9222;HP=2;HapScore=2;MGOF=108;MMLQ=27;MQ=0.63;NF=161;NR=0;PP=2965;QD=20;SC=CTGCCGCCGACATTCTGTCCC;SbPval=1.0;Source=Platypus;TC=172;TCF=171;TCR=1;TR=161;WE=468394;WS=468376 GT:GL:GOF:GQ:NR:NV 1/1:-16.75,-1.98,0.0:16:20:4:4 1/1:-33.75,-3.48,0.0:0:35:9:9 ./.:-5.85,-1.07,0.0:0:11:1:1 1/1:-9.45,-1.37,0.0:8:14:2:2 1/1:-8.45,-1.37,0.0:97:14:2:2 1/1:-18.65,-2.28,0.0:8:23:5:5 1/1:-21.65,-2.28,0.0:3:23:5:5 1/1:-9.75,-1.37,0.0:0:14:2:2 ./.:-2.15,-0.77,0.0:0:8:0:0 1/1:-18.35,-2.55,0.0:48:26:6:6 1/1:-27.35,-3.15,0.0:46:32:8:8 1/1:-21.85,-2.28,0.0:36:23:5:5 1/1:-9.55,-1.37,0.0:8:14:2:2 1/1:-12.85,-1.98,0.0:14:20:4:4 1/1:-8.65,-1.62,0.0:33:16:3:3 1/1:-11.55,-1.65,0.0:38:17:3:3 1/1:-28.95,-3.15,0.0:50:32:8:8 1/1:-24.45,-2.58,0.0:14:26:6:6 1/1:-14.35,-1.95,0.0:35:20:5:4 1/1:-48.95,-2.3,0.0:14:23:16:15 1/0:-7.27,0.0,-0.52:37:6:3:2 1/1:-24.95,-2.58,0.0:30:26:6:6 1/0:-19.89,0.0,-3.84:23:38:9:7 1/1:-9.05,-1.37,0.0:108:14:3:2 1/1:-18.85,-3.09,0.0:57:31:8:8 ./.:-5.85,-1.07,0.0:6:11:1:1 1/0:-19.25,0.0,-0.7:39:8:9:8 1/1:-19.55,-2.28,0.0:24:23:6:5 ./.:0,0,0:0:0:0:0 ./.:-5.95,-1.07,0.0:19:11:1:1 ./.:-5.95,-1.07,0.0:0:11:1:1 ./.:0,0,0:0:0:0:0 ./.:-2.15,-0.77,0.0:0:8:0:0 1/1:-9.35,-1.37,0.0:0:14:2:2 ./.:0,0,0:0:0:0:0 ./.:-5.95,-1.07,0.0:0:11:1:1 ./.:-5.95,-1.07,0.0:0:11:1:1 ./.:-5.95,-1.07,0.0:0:11:1:1 ./.:-5.55,-1.07,0.0:0:11:1:1 ./.:-4.85,-1.07,0.0:0:11:1:1 ./.:-5.75,-1.07,0.0:0:11:1:1 ./.:0,0,0:0:0:0:0 ./.:-5.95,-1.07,0.0:0:11:1:1 1/0:-4.57,0.0,-2.43:0:24:2:1 ./.:0,0,0:0:0:0:0 1/0:-27.83,0.0,-0.28:8:5:9:8 1/0:-8.27,0.0,-2.42:0:24:3:2 1/1:-7.45,-1.35,0.0:38:14:2:2 1/1:-18.15,-1.98,0.0:9:20:4:4 chrXII 468701 . T C 2965 badReads;MQ BRF=0.98;FR=1.0000;HP=1;HapScore=1;MGOF=15;MMLQ=34;MQ=5.25;NF=6770;NR=0;PP=2965;QD=20;SC=ATCCTATTGCTATTAGATGAA;SbPval=1.0;Source=Platypus;TC=6959;TCF=6958;TCR=1;TR=6770;WE=468709;WS=468691 GT:GL:GOF:GQ:NR:NV 1/1:-300.0,-21.26,0.0:9:99:112:106 1/1:-274.64,-32.79,0.0:0:99:71:71 1/1:-182.24,-24.41,0.0:1:99:43:43 1/1:-125.04,-20.2,0.0:0:99:28:28 1/1:-300.0,-22.39,0.0:7:99:96:91 1/1:-135.54,-20.8,0.0:4:99:30:30 1/1:-152.34,-22.0,0.0:3:99:34:34 1/1:-178.24,-24.11,0.0:1:99:41:41 1/1:-197.34,-26.52,0.0:3:99:50:49 1/1:-300.0,-55.67,0.0:12:99:160:159 1/1:-300.0,-60.53,0.0:13:99:196:193 1/1:-300.0,-50.49,0.0:11:99:151:148 1/1:-300.0,-65.28,0.0:13:99:208:204 1/1:-300.0,-78.97,0.0:13:99:263:257 1/1:-300.0,-47.55,0.0:11:99:133:132 1/1:-300.0,-69.43,0.0:11:99:264:257 1/1:-300.0,-30.36,0.0:9:99:176:165 1/1:-300.0,-27.95,0.0:12:99:179:165 1/1:-300.0,-43.88,0.0:13:99:175:169 1/1:-300.0,-197.25,0.0:12:99:672:664 1/1:-300.0,-52.67,0.0:14:99:145:143 1/1:-300.0,-74.35,0.0:10:99:322:312 1/1:-300.0,-48.98,0.0:15:99:197:189 1/1:-300.0,-80.34,0.0:14:99:287:281 1/1:-300.0,-54.33,0.0:15:99:162:159 1/1:-300.0,-46.39,0.0:9:99:115:115 1/1:-300.0,-61.39,0.0:11:99:278:268 1/1:-300.0,-96.38,0.0:13:99:307:303 1/1:-221.74,-28.02,0.0:4:99:54:54 1/1:-192.64,-22.42,0.0:4:99:49:47 1/1:-193.74,-19.52,0.0:2:99:51:49 1/1:-300.0,-33.56,0.0:4:99:85:84 1/1:-196.84,-19.52,0.0:1:99:51:49 1/1:-212.24,-22.82,0.0:1:99:54:52 1/1:-163.84,-20.31,0.0:5:99:41:40 1/1:-207.44,-26.82,0.0:4:99:50:50 1/1:-300.0,-31.95,0.0:2:99:80:78 1/1:-260.84,-24.64,0.0:4:99:68:66 1/1:-196.74,-25.92,0.0:2:99:47:47 1/1:-300.0,-40.37,0.0:2:99:95:95 1/1:-233.24,-29.23,0.0:5:99:58:58 1/1:-191.24,-25.92,0.0:5:99:47:47 1/1:-215.74,-27.72,0.0:3:99:53:53 1/1:-238.74,-26.33,0.0:2:99:61:60 1/1:-183.24,-25.31,0.0:7:99:45:45 1/1:-300.0,-48.57,0.0:15:99:196:189 1/1:-300.0,-16.11,0.0:15:99:201:184 1/1:-300.0,-46.11,0.0:9:99:264:251 1/1:-300.0,-76.38,0.0:15:99:414:396 chrXII 472024 . T G 6 Q20;badReads;HapScore;MQ;QD BRF=0.98;FR=0.0712;HP=3;HapScore=8;MGOF=226;MMLQ=12;MQ=3.65;NF=11;NR=0;PP=6;QD=3.70647386793;SC=GAAACAAAGGTGATGAAAGTT;SbPval=1.0;Source=Platypus;TC=102;TCF=83;TCR=19;TR=11;WE=472040;WS=472014 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-1.9,-9.84:85:19:4:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 0/0:0.0,-1.68,-11.75:24:17:3:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-1.12,-4.79:0:11:1:0 ./.:0,0,0:0:0:0:0 0/0:0.0,-1.36,-6.55:79:14:3:0 ./.:0,0,0:0:0:0:0 0/0:0.0,-1.66,-11.15:101:17:3:0 0/0:0.0,-2.52,-17.74:67:25:6:0 ./.:0.0,-1.09,-3.38:48:11:1:0 ./.:0.0,-1.09,-3.42:226:11:1:0 0/0:0.0,-1.37,-7.46:121:14:2:0 0/0:0.0,-1.2,-6.42:83:12:2:0 0/0:0.0,-1.39,-7.06:58:14:2:0 0/0:0.0,-2.24,-11.47:106:22:3:0 1/0:-3.42,0.0,-26.96:45:34:14:4 0/0:0.0,-0.45,-6.84:61:6:3:1 0/0:0.0,-2.17,-18.54:51:22:9:1 0/0:0.0,-2.06,-9.16:62:21:3:0 0/0:0.0,-2.85,-21.04:52:28:7:0 0/0:0.0,-1.98,-15.34:15:20:4:0 0/0:0.0,-1.03,-10.24:80:11:5:1 0/0:0.0,-1.37,-5.56:63:14:2:0 0/0:0.0,-2.21,-13.67:61:22:5:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-1.12,-5.08:48:11:1:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-1.11,-5.29:45:11:1:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.79,-2.18:93:8:1:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-1.11,-6.49:15:11:1:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0.0,-0.79,-2.18:129:8:1:0 0/0:0.0,-0.43,-6.25:133:6:3:1 0/0:0.0,-1.37,-7.46:52:14:2:0 ./.:-0.18,0.0,-8.52:76:4:5:2 1/0:-1.22,0.0,-7.69:69:12:4:1 chrXII 482040 . ATT A 31 badReads;MQ BRF=1.0;FR=0.5798;HP=4;HapScore=2;MGOF=56;MMLQ=26;MQ=0.64;NF=0;NR=2;PP=31;QD=40.640143618;SC=ACACCTAACTATTTCGGTTGC;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=482049;WS=482030 GT:GL:GOF:GQ:NR:NV ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:-0.14,0.0,-2.06:56:4:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 1/1:-9.08,-0.44,0.0:13:6:3:2 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 ./.:0,0,0:0:0:0:0 chrXII 491513 . C CT 380 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=12;HapScore=1;MGOF=39;MMLQ=12;MQ=59.95;NF=160;NR=125;PP=380;QD=1.35438596491;SC=AATTGCATCACTTTTTTTTTT;SbPval=0.48;Source=Platypus;TC=20259;TCF=10376;TCR=9883;TR=285;WE=491542;WS=491501 GT:GL:GOF:GQ:NR:NV 0/1:-31.65,0.0,-300.0:39:99:466:1 0/0:0.0,-55.73,-274.91:2:99:201:7 0/0:0.0,-41.09,-222.18:2:99:135:5 0/0:0.0,-23.05,-144.06:2:99:82:3 0/1:-7.68,0.0,-300.0:30:77:426:2 0/0:0.0,-25.47,-168.77:2:99:93:0 0/0:0.0,-42.28,-231.27:3:99:153:7 0/0:0.0,-28.17,-161.48:1:99:100:1 0/0:0.0,-44.41,-251.4:13:99:169:3 0/0:0.0,-94.67,-300.0:22:99:441:4 0/0:0.0,-126.59,-300.0:22:99:555:8 0/0:0.0,-114.47,-300.0:25:99:492:5 0/0:0.0,-122.83,-300.0:22:99:569:7 0/0:0.0,-145.92,-300.0:22:99:626:9 0/0:0.0,-90.72,-300.0:26:99:423:6 0/0:0.0,-168.88,-300.0:21:99:760:7 0/0:0.0,-114.76,-300.0:22:99:526:8 0/0:0.0,-114.19,-300.0:22:99:523:7 0/0:0.0,-134.88,-300.0:20:99:623:11 0/0:0.0,-300.0,-300.0:21:99:1903:15 0/0:0.0,-127.07,-300.0:22:99:525:3 0/0:0.0,-205.2,-300.0:23:99:921:10 0/0:0.0,-120.81,-300.0:25:99:519:5 0/0:0.0,-190.84,-300.0:22:99:864:10 0/0:0.0,-106.89,-300.0:23:99:480:5 0/0:0.0,-84.5,-300.0:23:99:418:7 0/0:0.0,-145.16,-300.0:22:99:613:7 0/0:0.0,-186.96,-300.0:21:99:861:12 0/0:0.0,-36.07,-220.49:19:99:144:3 0/0:0.0,-49.49,-300.0:17:99:196:4 0/0:0.0,-38.05,-248.44:20:99:169:8 0/0:0.0,-48.89,-275.82:19:99:188:6 0/0:0.0,-47.96,-298.14:15:99:193:6 0/0:0.0,-45.69,-255.29:18:99:175:9 0/0:0.0,-24.42,-174.26:17:99:100:1 0/0:0.0,-42.62,-249.0:16:99:161:1 0/0:0.0,-51.53,-296.92:17:99:207:5 0/0:0.0,-44.63,-274.35:18:99:177:5 0/0:0.0,-49.77,-281.22:15:99:182:4 0/0:0.0,-58.36,-300.0:16:99:227:5 0/0:0.0,-39.11,-225.43:14:99:143:2 0/0:0.0,-30.2,-220.88:13:99:147:6 0/0:0.0,-29.87,-193.88:15:99:120:3 0/0:0.0,-46.62,-278.55:16:99:187:5 0/0:0.0,-46.91,-284.66:16:99:197:7 0/0:0.0,-124.36,-300.0:22:99:521:5 0/0:0.0,-121.49,-300.0:20:99:529:6 0/0:0.0,-153.9,-300.0:20:99:753:9 0/0:0.0,-223.33,-300.0:22:99:1076:10 chrXII 491525 . TG T 380 QD;alleleBias BRF=0.02;FR=0.0204;HP=11;HapScore=1;MGOF=39;MMLQ=22;MQ=59.96;NF=153;NR=126;PP=380;QD=1.3835125448;SC=TTTTTTTTTTTGGCTTGTGGC;SbPval=0.69;Source=Platypus;TC=18914;TCF=9464;TCR=9450;TR=279;WE=491542;WS=491501 GT:GL:GOF:GQ:NR:NV 0/1:-31.65,0.0,-300.0:39:99:417:1 0/0:0.0,-55.73,-300.0:2:99:183:8 0/0:0.0,-41.09,-300.0:2:99:138:6 0/0:0.0,-23.05,-255.26:2:99:74:3 0/1:-7.68,0.0,-300.0:30:77:383:1 0/0:0.0,-25.47,-284.46:2:99:84:0 0/0:0.0,-42.28,-300.0:2:99:137:6 0/0:0.0,-28.17,-300.0:1:99:93:1 0/0:0.0,-44.41,-300.0:13:99:155:3 0/0:0.0,-94.67,-300.0:22:99:409:4 0/0:0.0,-126.59,-300.0:22:99:510:8 0/0:0.0,-114.47,-300.0:25:99:462:5 0/0:0.0,-122.83,-300.0:22:99:526:7 0/0:0.0,-145.92,-300.0:22:99:584:9 0/0:0.0,-90.72,-300.0:26:99:395:6 0/0:0.0,-168.88,-300.0:21:99:704:7 0/0:0.0,-114.76,-300.0:22:99:497:8 0/0:0.0,-114.19,-300.0:22:99:486:7 0/0:0.0,-134.88,-300.0:20:99:580:10 0/0:0.0,-300.0,-300.0:21:99:1795:15 0/0:0.0,-127.07,-300.0:22:99:492:3 0/0:0.0,-205.2,-300.0:23:99:860:8 0/0:0.0,-120.81,-300.0:25:99:503:5 0/0:0.0,-190.84,-300.0:22:99:801:10 0/0:0.0,-106.89,-300.0:23:99:446:5 0/0:0.0,-84.5,-300.0:23:99:380:6 0/0:0.0,-145.16,-300.0:22:99:582:7 0/0:0.0,-186.96,-300.0:21:99:793:11 0/0:0.0,-36.07,-300.0:19:99:134:3 0/0:0.0,-49.49,-300.0:17:99:185:4 0/0:0.0,-38.05,-300.0:20:99:158:8 0/0:0.0,-48.89,-300.0:19:99:177:6 0/0:0.0,-47.96,-300.0:15:99:191:6 0/0:0.0,-45.69,-300.0:17:99:159:10 0/0:0.0,-24.42,-271.56:17:99:92:1 0/0:0.0,-42.62,-300.0:16:99:150:1 0/0:0.0,-51.53,-300.0:17:99:190:5 0/0:0.0,-44.63,-300.0:18:99:170:5 0/0:0.0,-49.77,-300.0:15:99:177:4 0/0:0.0,-58.36,-300.0:16:99:215:5 0/0:0.0,-39.11,-300.0:14:99:135:2 0/0:0.0,-30.2,-300.0:13:99:138:6 0/0:0.0,-29.87,-300.0:15:99:114:3 0/0:0.0,-46.62,-300.0:16:99:172:5 0/0:0.0,-46.91,-300.0:16:99:185:6 0/0:0.0,-124.36,-300.0:22:99:499:5 0/0:0.0,-121.49,-300.0:20:99:487:6 0/0:0.0,-153.9,-300.0:20:99:726:9 0/0:0.0,-223.33,-300.0:22:99:991:9 chrXII 498731 . C CTTTTTTT 535 badReads;QD;alleleBias;strandBias BRF=0.03;FR=0.0192;HP=10;HapScore=1;MGOF=25;MMLQ=12;MQ=59.97;NF=107;NR=93;PP=535;QD=2.735;SC=TTAGTACAAACTTTTTTTTTT;SbPval=0.0;Source=Platypus;TC=18283;TCF=8418;TCR=9865;TR=200;WE=498758;WS=498714 GT:GL:GOF:GQ:NR:NV 0/1:-0.86,0.0,-300.0:21:9:429:6 0/0:0.0,-59.51,-300.0:1:99:202:2 0/0:0.0,-42.05,-300.0:1:99:137:1 0/0:0.0,-36.03,-300.0:1:99:115:1 0/1:-54.6,0.0,-300.0:25:99:348:10 0/0:0.0,-30.91,-300.0:0:99:103:0 0/0:0.0,-50.48,-300.0:1:99:169:4 0/0:0.0,-33.62,-300.0:1:99:107:0 0/0:0.0,-63.72,-300.0:4:99:204:1 0/0:0.0,-113.3,-300.0:15:99:385:2 0/0:0.0,-146.81,-300.0:14:99:489:5 0/0:0.0,-140.64,-300.0:15:99:469:3 0/0:0.0,-155.23,-300.0:15:99:530:6 0/0:0.0,-157.82,-300.0:20:99:544:7 0/0:0.0,-111.76,-300.0:17:99:405:3 0/0:0.0,-194.95,-300.0:15:99:659:5 0/0:0.0,-127.89,-300.0:15:99:443:8 0/0:0.0,-159.07,-300.0:17:99:509:2 0/0:0.0,-141.97,-300.0:15:99:474:3 0/0:0.0,-300.0,-300.0:17:99:1809:9 0/0:0.0,-150.88,-300.0:17:99:497:4 0/0:0.0,-214.54,-300.0:18:99:770:12 0/0:0.0,-136.59,-300.0:17:99:456:2 0/0:0.0,-213.86,-300.0:17:99:733:5 0/0:0.0,-129.57,-300.0:14:99:435:1 0/0:0.0,-115.8,-300.0:16:99:369:4 0/0:0.0,-188.3,-300.0:18:99:646:6 0/0:0.0,-231.27,-300.0:18:99:783:6 0/0:0.0,-48.07,-300.0:9:99:156:5 0/0:0.0,-69.44,-300.0:6:99:226:6 0/0:0.0,-53.49,-300.0:5:99:176:1 0/0:0.0,-60.65,-300.0:6:99:202:5 0/0:0.0,-53.18,-300.0:6:99:169:3 0/0:0.0,-52.28,-300.0:3:99:167:4 0/0:0.0,-30.01,-300.0:5:99:96:3 0/0:0.0,-51.22,-300.0:5:99:174:2 0/0:0.0,-65.51,-300.0:7:99:210:5 0/0:0.0,-52.84,-300.0:5:99:176:4 0/0:0.0,-47.16,-300.0:3:99:155:1 0/0:0.0,-82.94,-300.0:5:99:268:9 0/0:0.0,-42.95,-300.0:3:99:141:1 0/0:0.0,-44.76,-300.0:7:99:151:2 0/0:0.0,-40.84,-300.0:8:99:133:3 0/0:0.0,-68.82,-300.0:6:99:228:3 0/0:0.0,-64.0,-300.0:8:99:215:3 0/0:0.0,-128.55,-300.0:14:99:447:5 0/0:0.0,-89.21,-300.0:18:99:292:2 0/0:0.0,-149.9,-300.0:20:99:522:6 0/0:0.0,-223.91,-300.0:19:99:760:9 chrXII 498741 . TGGCCCGG T 535 badReads;QD;alleleBias;strandBias BRF=0.03;FR=0.0192;HP=9;HapScore=1;MGOF=25;MMLQ=12;MQ=59.97;NF=100;NR=96;PP=535;QD=2.79081632653;SC=CTTTTTTTTTTGGCCCGGGCG;SbPval=0.0;Source=Platypus;TC=17820;TCF=8096;TCR=9724;TR=196;WE=498758;WS=498714 GT:GL:GOF:GQ:NR:NV 0/1:-0.86,0.0,-300.0:21:9:414:6 0/0:0.0,-59.51,-300.0:1:99:192:4 0/0:0.0,-42.05,-300.0:1:99:138:2 0/0:0.0,-36.03,-300.0:1:99:112:1 0/1:-54.6,0.0,-300.0:25:99:339:10 0/0:0.0,-30.91,-300.0:0:99:97:1 0/0:0.0,-50.48,-300.0:1:99:166:2 0/0:0.0,-33.62,-300.0:1:99:107:0 0/0:0.0,-63.72,-300.0:4:99:204:1 0/0:0.0,-113.3,-300.0:15:99:369:2 0/0:0.0,-146.81,-300.0:14:99:482:5 0/0:0.0,-140.64,-300.0:15:99:450:3 0/0:0.0,-155.23,-300.0:14:99:507:5 0/0:0.0,-157.82,-300.0:20:99:520:7 0/0:0.0,-111.76,-300.0:17:99:376:3 0/0:0.0,-194.95,-300.0:15:99:638:4 0/0:0.0,-127.89,-300.0:15:99:426:8 0/0:0.0,-159.07,-300.0:17:99:509:2 0/0:0.0,-141.97,-300.0:15:99:461:3 0/0:0.0,-300.0,-300.0:17:99:1767:9 0/0:0.0,-150.88,-300.0:17:99:485:4 0/0:0.0,-214.54,-300.0:18:99:750:11 0/0:0.0,-136.59,-300.0:17:99:459:2 0/0:0.0,-213.86,-300.0:17:99:706:5 0/0:0.0,-129.57,-300.0:14:99:416:1 0/0:0.0,-115.8,-300.0:16:99:368:4 0/0:0.0,-188.3,-300.0:18:99:622:6 0/0:0.0,-231.27,-300.0:18:99:761:6 0/0:0.0,-48.07,-300.0:9:99:153:5 0/0:0.0,-69.44,-300.0:6:99:225:6 0/0:0.0,-53.49,-300.0:5:99:174:0 0/0:0.0,-60.65,-300.0:5:99:201:5 0/0:0.0,-53.18,-300.0:6:99:171:3 0/0:0.0,-52.28,-300.0:3:99:166:4 0/0:0.0,-30.01,-300.0:5:99:94:3 0/0:0.0,-51.22,-300.0:5:99:176:2 0/0:0.0,-65.51,-300.0:7:99:210:5 0/0:0.0,-52.84,-300.0:5:99:176:4 0/0:0.0,-47.16,-300.0:3:99:152:1 0/0:0.0,-82.94,-300.0:5:99:271:9 0/0:0.0,-42.95,-300.0:3:99:138:1 0/0:0.0,-44.76,-300.0:6:99:144:2 0/0:0.0,-40.84,-300.0:8:99:133:3 0/0:0.0,-68.82,-300.0:6:99:226:2 0/0:0.0,-64.0,-300.0:7:99:209:3 0/0:0.0,-128.55,-300.0:14:99:429:4 0/0:0.0,-89.21,-300.0:18:99:287:2 0/0:0.0,-149.9,-300.0:20:99:506:6 0/0:0.0,-223.91,-300.0:19:99:738:9 chrXII 506917 . C T 2923 PASS BRF=0.03;FR=0.0204;HP=2;HapScore=1;MGOF=15;MMLQ=37;MQ=59.98;NF=199;NR=260;PP=2923;QD=20;SC=TTTAGAAACTCTATTGGTTGG;SbPval=0.56;Source=Platypus;TC=19681;TCF=9339;TCR=10342;TR=459;WE=506925;WS=506896 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-128.79,-300.0:6:99:449:1 0/0:0.0,-62.79,-300.0:1:99:203:0 0/0:0.0,-47.14,-300.0:1:99:154:0 0/0:0.0,-31.07,-300.0:1:99:101:0 1/1:-296.64,-114.35,0.0:7:99:433:427 0/0:0.0,-26.06,-300.0:1:99:81:0 0/0:0.0,-41.97,-300.0:1:99:143:1 0/0:0.0,-36.12,-300.0:1:99:117:0 0/0:0.0,-54.97,-300.0:2:99:184:1 0/0:0.0,-112.58,-300.0:8:99:375:0 0/0:0.0,-155.26,-300.0:12:99:520:1 0/0:0.0,-142.81,-300.0:15:99:474:1 0/0:0.0,-168.92,-300.0:12:99:579:3 0/0:0.0,-172.54,-300.0:14:99:585:3 0/0:0.0,-123.37,-300.0:11:99:403:0 0/0:0.0,-231.47,-300.0:12:99:773:0 0/0:0.0,-146.19,-300.0:13:99:494:0 0/0:0.0,-156.43,-300.0:11:99:518:0 0/0:0.0,-153.12,-300.0:11:99:522:1 0/0:0.0,-300.0,-300.0:11:99:1879:6 0/0:0.0,-151.73,-300.0:13:99:510:1 0/0:0.0,-268.74,-300.0:12:99:929:3 0/0:0.0,-138.95,-300.0:14:99:475:1 0/0:0.0,-205.73,-300.0:11:99:691:0 0/0:0.0,-141.57,-300.0:12:99:466:0 0/0:0.0,-128.18,-300.0:9:99:445:0 0/0:0.0,-189.97,-300.0:15:99:644:0 0/0:0.0,-250.73,-300.0:11:99:852:2 0/0:0.0,-55.97,-300.0:2:99:185:1 0/0:0.0,-62.79,-300.0:3:99:218:0 0/0:0.0,-52.25,-300.0:1:99:171:0 0/0:0.0,-67.31,-300.0:2:99:221:0 0/0:0.0,-64.9,-300.0:1:99:213:0 0/0:0.0,-62.79,-300.0:5:99:207:0 0/0:0.0,-32.69,-300.0:3:99:103:0 0/0:0.0,-49.55,-300.0:6:99:160:0 0/0:0.0,-60.38,-300.0:4:99:197:0 0/0:0.0,-53.46,-300.0:1:99:173:0 0/0:0.0,-54.96,-300.0:2:99:179:0 0/0:0.0,-71.82,-300.0:2:99:232:0 0/0:0.0,-42.32,-300.0:1:99:138:0 0/0:0.0,-42.92,-300.0:5:99:140:0 0/0:0.0,-39.91,-300.0:1:99:127:0 0/0:0.0,-67.91,-300.0:2:99:227:0 0/0:0.0,-63.99,-300.0:3:99:216:0 0/0:0.0,-149.94,-300.0:12:99:507:1 0/0:0.0,-124.66,-300.0:11:99:418:1 0/0:0.0,-197.08,-300.0:13:99:668:2 0/0:0.0,-287.71,-300.0:12:99:982:2 chrXII 513995 . GC G 467 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=2;HapScore=1;MGOF=38;MMLQ=12;MQ=59.93;NF=187;NR=210;PP=467;QD=1.29982594426;SC=AAATCAACGAGCCAAAAAAAA;SbPval=0.76;Source=Platypus;TC=15418;TCF=8069;TCR=7349;TR=397;WE=514006;WS=513957 GT:GL:GOF:GQ:NR:NV 1/0:-39.97,0.0,-300.0:36:99:273:3 0/0:0.0,-31.86,-300.0:2:99:107:10 0/0:0.0,-21.29,-219.36:2:99:74:5 0/0:0.0,-19.13,-201.96:0:99:63:1 1/0:-12.51,0.0,-300.0:30:99:234:3 0/0:0.0,-19.33,-194.96:2:99:62:4 0/0:0.0,-19.46,-220.96:1:99:65:2 0/0:0.0,-19.6,-213.36:2:99:66:6 0/0:0.0,-28.01,-300.0:33:99:133:5 0/0:0.0,-48.83,-300.0:35:99:329:10 0/0:0.0,-45.82,-300.0:32:99:416:10 0/0:0.0,-67.57,-300.0:34:99:375:10 0/0:0.0,-71.24,-300.0:33:99:457:11 0/0:0.0,-68.83,-300.0:38:99:466:6 0/0:0.0,-68.03,-300.0:32:99:343:11 0/0:0.0,-89.92,-300.0:32:99:570:10 0/0:0.0,-45.27,-300.0:32:99:390:10 0/0:0.0,-68.42,-300.0:35:99:375:10 0/0:0.0,-62.15,-300.0:31:99:402:8 0/0:0.0,-216.81,-300.0:36:99:1479:32 0/0:0.0,-45.67,-300.0:29:99:438:12 0/0:0.0,-86.8,-300.0:33:99:647:20 0/0:0.0,-47.68,-300.0:32:99:406:9 0/0:0.0,-114.76,-300.0:35:99:586:8 0/0:0.0,-55.28,-300.0:32:99:371:9 0/0:0.0,-54.74,-300.0:27:99:308:5 0/0:0.0,-48.3,-300.0:31:99:522:12 0/0:0.0,-100.79,-300.0:33:99:634:12 0/0:0.0,-30.03,-300.0:35:99:146:7 0/0:0.0,-40.79,-300.0:34:99:190:5 0/0:0.0,-14.56,-208.26:28:99:94:1 0/0:0.0,-27.7,-300.0:32:99:168:7 0/0:0.0,-24.16,-300.0:28:99:140:3 0/0:0.0,-25.06,-300.0:28:99:146:2 0/0:0.0,-20.07,-223.86:35:99:87:2 0/0:0.0,-27.1,-300.0:32:99:172:7 0/0:0.0,-28.18,-300.0:32:99:163:4 0/0:0.0,-40.69,-300.0:26:99:160:4 0/0:0.0,-33.65,-300.0:32:99:155:9 0/0:0.0,-39.41,-300.0:22:99:177:4 0/0:0.0,-28.16,-291.06:29:99:115:6 0/0:0.0,-13.72,-243.16:32:99:107:3 0/0:0.0,-23.1,-256.16:27:99:99:4 0/0:0.0,-46.89,-300.0:33:99:210:4 0/0:0.0,-41.21,-300.0:27:99:178:5 0/0:0.0,-74.59,-300.0:37:99:404:14 0/0:0.0,-92.5,-300.0:30:99:442:12 0/0:0.0,-69.29,-300.0:33:99:647:10 0/0:0.0,-117.15,-300.0:35:99:827:30 chrXII 513997 . C CA 514 badReads;QD;alleleBias BRF=0.03;FR=0.0204;HP=14;HapScore=1;MGOF=38;MMLQ=12;MQ=59.92;NF=178;NR=211;PP=514;QD=1.33161953728;SC=ATCAACGAGCCAAAAAAAAAA;SbPval=0.78;Source=Platypus;TC=16048;TCF=8093;TCR=7955;TR=389;WE=514006;WS=513957 GT:GL:GOF:GQ:NR:NV 1/0:-39.97,0.0,-233.54:36:99:282:3 0/0:0.0,-30.11,-103.81:3:99:95:8 0/0:0.0,-21.29,-75.01:2:99:66:4 0/0:0.0,-19.13,-67.91:0:99:54:0 1/0:-12.51,0.0,-211.35:30:99:247:3 0/0:0.0,-19.33,-76.5:3:99:58:4 0/0:0.0,-19.46,-81.04:1:99:66:1 0/0:0.0,-19.59,-74.0:2:99:58:6 0/0:0.0,-28.01,-164.3:33:99:134:5 0/0:0.0,-48.83,-300.0:35:99:342:10 0/0:0.0,-45.82,-300.0:32:99:445:10 0/0:0.0,-67.57,-300.0:34:99:397:10 0/0:0.0,-71.24,-300.0:33:99:494:11 0/0:0.0,-68.83,-300.0:38:99:494:6 0/0:0.0,-68.03,-300.0:32:99:359:11 0/0:0.0,-89.92,-300.0:32:99:600:10 0/0:0.0,-45.27,-300.0:32:99:417:10 0/0:0.0,-68.42,-300.0:35:99:397:10 0/0:0.0,-62.15,-300.0:31:99:429:6 0/0:0.0,-216.81,-300.0:36:99:1531:32 0/0:0.0,-45.67,-300.0:29:99:462:12 0/0:0.0,-86.8,-300.0:33:99:677:19 0/0:0.0,-47.68,-300.0:32:99:431:9 0/0:0.0,-114.76,-300.0:35:99:601:8 0/0:0.0,-55.28,-300.0:32:99:381:8 0/0:0.0,-54.74,-300.0:27:99:324:5 0/0:0.0,-48.3,-300.0:31:99:555:12 0/0:0.0,-100.79,-300.0:33:99:666:12 0/0:0.0,-30.03,-180.68:35:99:151:7 0/0:0.0,-40.79,-261.25:34:99:190:5 0/0:0.0,-14.56,-115.24:28:99:95:1 0/0:0.0,-27.7,-188.56:32:99:171:7 0/0:0.0,-24.16,-169.0:28:99:145:4 0/0:0.0,-25.06,-162.92:28:99:153:2 0/0:0.0,-20.07,-116.94:35:99:89:2 0/0:0.0,-27.1,-193.84:32:99:174:7 0/0:0.0,-28.18,-194.28:32:99:168:4 0/0:0.0,-40.69,-203.01:26:99:164:4 0/0:0.0,-33.65,-175.63:32:99:160:9 0/0:0.0,-39.41,-225.41:22:99:185:4 0/0:0.0,-28.16,-154.3:29:99:119:6 0/0:0.0,-13.72,-126.63:32:99:113:3 0/0:0.0,-23.1,-130.11:27:99:101:4 0/0:0.0,-46.89,-266.71:33:99:216:4 0/0:0.0,-41.21,-225.11:27:99:184:5 0/0:0.0,-74.59,-300.0:37:99:417:14 0/0:0.0,-92.5,-300.0:30:99:467:12 0/0:0.0,-69.29,-300.0:33:99:658:10 0/0:0.0,-117.15,-300.0:35:99:866:30 chrXII 514965 . C CTT 78 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=15;HapScore=1;MGOF=35;MMLQ=12;MQ=59.95;NF=174;NR=122;PP=78;QD=0.283783783784;SC=CGAATACTTTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=19662;TCF=10422;TCR=9240;TR=296;WE=514997;WS=514951 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-37.03,-300.0:35:99:369:8 0/0:0.0,-57.91,-300.0:2:99:225:5 0/0:0.0,-42.93,-238.33:2:99:159:5 0/0:0.0,-26.97,-166.33:2:99:98:1 0/1:-8.72,0.0,-300.0:35:87:379:5 0/0:0.0,-27.27,-177.59:2:99:99:3 0/0:0.0,-38.3,-230.21:1:99:141:3 0/0:0.0,-34.12,-207.6:2:99:123:1 0/0:0.0,-53.2,-292.93:13:99:189:4 0/0:0.0,-100.49,-300.0:20:99:379:3 0/0:0.0,-164.19,-300.0:21:99:591:6 0/0:0.0,-117.0,-300.0:25:99:445:5 0/0:0.0,-148.18,-300.0:22:99:560:5 0/0:0.0,-170.2,-300.0:25:99:643:5 0/0:0.0,-109.26,-300.0:21:99:399:6 0/0:0.0,-200.09,-300.0:21:99:741:12 0/0:0.0,-134.53,-300.0:21:99:508:3 0/0:0.0,-135.25,-300.0:20:99:492:5 0/0:0.0,-145.7,-300.0:18:99:545:10 0/0:0.0,-300.0,-300.0:24:99:1822:28 0/0:0.0,-145.76,-300.0:23:99:572:2 0/0:0.0,-244.43,-300.0:22:99:913:11 0/0:0.0,-139.6,-300.0:21:99:518:6 0/0:0.0,-196.29,-300.0:22:99:737:9 0/0:0.0,-118.14,-300.0:20:99:420:5 0/0:0.0,-111.24,-300.0:20:99:413:6 0/0:0.0,-182.78,-300.0:20:99:684:9 0/0:0.0,-217.71,-300.0:21:99:800:9 0/0:0.0,-48.69,-283.93:10:99:170:4 0/0:0.0,-53.21,-300.0:14:99:178:5 0/0:0.0,-42.54,-257.43:16:99:156:8 0/0:0.0,-59.54,-300.0:15:99:210:2 0/0:0.0,-48.01,-296.83:11:99:171:1 0/0:0.0,-51.96,-288.83:8:99:178:1 0/0:0.0,-23.66,-149.11:7:99:79:3 0/0:0.0,-49.53,-292.93:12:99:180:5 0/0:0.0,-52.51,-300.0:11:99:192:3 0/0:0.0,-53.76,-299.63:13:99:193:3 0/0:0.0,-42.93,-276.77:11:99:178:3 0/0:0.0,-60.62,-300.0:12:99:220:4 0/0:0.0,-36.3,-204.87:19:99:120:12 0/0:0.0,-32.8,-225.73:16:99:130:2 0/0:0.0,-31.39,-197.76:12:99:117:4 0/0:0.0,-54.91,-300.0:13:99:197:6 0/0:0.0,-57.53,-300.0:14:99:191:9 0/0:0.0,-134.44,-300.0:21:99:521:10 0/0:0.0,-140.42,-300.0:24:99:517:8 0/0:0.0,-198.22,-300.0:23:99:743:8 0/0:0.0,-281.2,-300.0:25:99:1057:15 chrXII 514977 . TC T 78 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=11;HapScore=1;MGOF=35;MMLQ=12;MQ=59.96;NF=168;NR=121;PP=78;QD=0.290657439446;SC=TTTTTTTTTTTCACAGGAAAA;SbPval=0.97;Source=Platypus;TC=18025;TCF=9707;TCR=8318;TR=289;WE=514997;WS=514951 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-37.03,-300.0:35:99:324:7 0/0:0.0,-57.91,-300.0:2:99:191:4 0/0:0.0,-42.93,-300.0:2:99:136:4 0/0:0.0,-26.97,-300.0:2:99:85:0 0/1:-8.72,0.0,-300.0:35:87:325:6 0/0:0.0,-27.27,-300.0:2:99:85:3 0/0:0.0,-38.3,-300.0:1:99:123:3 0/0:0.0,-34.12,-300.0:2:99:109:1 0/0:0.0,-53.2,-300.0:13:99:173:4 0/0:0.0,-100.49,-300.0:20:99:353:3 0/0:0.0,-164.19,-300.0:21:99:540:6 0/0:0.0,-117.0,-300.0:25:99:409:5 0/0:0.0,-148.18,-300.0:22:99:508:5 0/0:0.0,-170.2,-300.0:25:99:583:5 0/0:0.0,-109.26,-300.0:21:99:365:6 0/0:0.0,-200.09,-300.0:20:99:690:12 0/0:0.0,-134.53,-300.0:20:99:471:3 0/0:0.0,-135.25,-300.0:20:99:461:5 0/0:0.0,-145.7,-300.0:18:99:503:9 0/0:0.0,-300.0,-300.0:23:99:1672:28 0/0:0.0,-145.76,-300.0:23:99:516:2 0/0:0.0,-244.43,-300.0:22:99:853:11 0/0:0.0,-139.6,-300.0:21:99:482:6 0/0:0.0,-196.29,-300.0:22:99:654:9 0/0:0.0,-118.14,-300.0:20:99:387:5 0/0:0.0,-111.24,-300.0:20:99:375:6 0/0:0.0,-182.78,-300.0:20:99:634:9 0/0:0.0,-217.71,-300.0:21:99:738:9 0/0:0.0,-48.69,-300.0:10:99:156:4 0/0:0.0,-53.21,-300.0:13:99:170:5 0/0:0.0,-42.54,-300.0:16:99:145:8 0/0:0.0,-59.54,-300.0:15:99:193:2 0/0:0.0,-48.01,-300.0:11:99:161:1 0/0:0.0,-51.96,-300.0:8:99:166:1 0/0:0.0,-23.66,-282.85:7:99:75:3 0/0:0.0,-49.53,-300.0:12:99:166:5 0/0:0.0,-52.51,-300.0:11:99:176:3 0/0:0.0,-53.76,-300.0:13:99:174:3 0/0:0.0,-42.93,-300.0:11:99:161:3 0/0:0.0,-60.62,-300.0:12:99:207:4 0/0:0.0,-36.3,-300.0:18:99:116:12 0/0:0.0,-32.8,-300.0:16:99:117:2 0/0:0.0,-31.39,-300.0:12:99:104:4 0/0:0.0,-54.91,-300.0:13:99:186:6 0/0:0.0,-57.53,-300.0:14:99:183:9 0/0:0.0,-134.44,-300.0:21:99:470:9 0/0:0.0,-140.42,-300.0:24:99:486:7 0/0:0.0,-198.22,-300.0:23:99:690:7 0/0:0.0,-281.21,-300.0:25:99:978:15 chrXII 514978 . CA C 48 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=12;HapScore=1;MGOF=35;MMLQ=12;MQ=59.97;NF=164;NR=121;PP=48;QD=0.291228070175;SC=TTTTTTTTTTCACAGGAAAAC;SbPval=0.96;Source=Platypus;TC=17934;TCF=9667;TCR=8267;TR=285;WE=514997;WS=514951 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-37.03,-300.0:35:99:319:7 0/0:0.0,-57.91,-300.0:2:99:193:4 0/0:0.0,-42.93,-300.0:2:99:140:4 0/0:0.0,-26.97,-300.0:2:99:85:0 0/1:-8.72,0.0,-300.0:35:87:322:6 0/0:0.0,-27.27,-300.0:2:99:87:3 0/0:0.0,-38.3,-300.0:1:99:122:3 0/0:0.0,-34.12,-300.0:2:99:108:1 0/0:0.0,-53.2,-300.0:13:99:170:4 0/0:0.0,-100.49,-300.0:20:99:348:3 0/0:0.0,-164.19,-300.0:21:99:538:6 0/0:0.0,-117.0,-300.0:25:99:409:5 0/0:0.0,-148.18,-300.0:22:99:507:5 0/0:0.0,-170.2,-300.0:25:99:584:5 0/0:0.0,-109.26,-300.0:21:99:362:6 0/0:0.0,-200.09,-300.0:20:99:682:11 0/0:0.0,-134.53,-300.0:20:99:467:3 0/0:0.0,-135.25,-300.0:20:99:460:5 0/0:0.0,-145.7,-300.0:18:99:500:8 0/0:0.0,-300.0,-300.0:23:99:1658:28 0/0:0.0,-145.76,-300.0:23:99:512:2 0/0:0.0,-244.43,-300.0:22:99:853:11 0/0:0.0,-139.6,-300.0:21:99:479:6 0/0:0.0,-196.29,-300.0:22:99:653:9 0/0:0.0,-118.14,-300.0:20:99:382:5 0/0:0.0,-111.24,-300.0:20:99:367:6 0/0:0.0,-182.78,-300.0:20:99:629:9 0/0:0.0,-217.71,-300.0:21:99:735:9 0/0:0.0,-48.69,-300.0:10:99:158:4 0/0:0.0,-53.21,-300.0:13:99:170:5 0/0:0.0,-42.54,-300.0:16:99:146:8 0/0:0.0,-59.54,-300.0:15:99:192:2 0/0:0.0,-48.01,-300.0:11:99:163:1 0/0:0.0,-51.96,-300.0:8:99:166:1 0/0:0.0,-23.66,-300.0:7:99:77:3 0/0:0.0,-49.53,-300.0:12:99:165:5 0/0:0.0,-52.51,-300.0:11:99:180:3 0/0:0.0,-53.76,-300.0:13:99:173:3 0/0:0.0,-42.93,-300.0:11:99:161:3 0/0:0.0,-60.62,-300.0:12:99:207:4 0/0:0.0,-36.3,-300.0:18:99:117:12 0/0:0.0,-32.8,-300.0:16:99:116:2 0/0:0.0,-31.39,-300.0:12:99:103:4 0/0:0.0,-54.91,-300.0:13:99:184:6 0/0:0.0,-57.53,-300.0:14:99:185:9 0/0:0.0,-134.44,-300.0:21:99:459:8 0/0:0.0,-140.42,-300.0:24:99:485:7 0/0:0.0,-198.22,-300.0:23:99:681:7 0/0:0.0,-281.21,-300.0:25:99:975:14 chrXII 515185 . GGTTAGCTTC G 468 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=1;HapScore=1;MGOF=24;MMLQ=12;MQ=59.97;NF=50;NR=86;PP=468;QD=3.87519116764;SC=GTTGTTTTTCGGTTAGCTTCG;SbPval=1.0;Source=Platypus;TC=18566;TCF=8172;TCR=10394;TR=136;WE=515217;WS=515175 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-12.98,-300.0:23:99:359:9 0/0:0.0,-71.22,-300.0:2:99:231:1 0/0:0.0,-56.17,-300.0:1:99:182:0 0/0:0.0,-32.69,-300.0:0:99:101:0 1/0:-53.19,0.0,-300.0:22:99:363:5 0/0:0.0,-38.41,-300.0:0:99:122:0 0/0:0.0,-48.35,-300.0:2:99:154:0 0/0:0.0,-34.8,-300.0:2:99:108:0 0/0:0.0,-51.43,-300.0:8:99:165:1 0/0:0.0,-121.06,-300.0:21:99:385:5 0/0:0.0,-147.89,-300.0:19:99:494:5 0/0:0.0,-131.88,-300.0:24:99:427:0 0/0:0.0,-150.37,-300.0:23:99:493:3 0/0:0.0,-168.62,-300.0:24:99:546:5 0/0:0.0,-111.54,-300.0:21:99:355:3 0/0:0.0,-200.17,-300.0:19:99:648:4 0/0:0.0,-151.78,-300.0:18:99:500:1 0/0:0.0,-142.57,-300.0:18:99:455:4 0/0:0.0,-158.53,-300.0:17:99:518:4 0/0:0.0,-300.0,-300.0:22:99:1711:13 0/0:0.0,-155.99,-300.0:17:99:505:7 0/0:0.0,-243.26,-300.0:20:99:807:5 0/0:0.0,-147.06,-300.0:19:99:478:3 0/0:0.0,-197.17,-300.0:22:99:645:6 0/0:0.0,-125.53,-300.0:22:99:425:6 0/0:0.0,-113.29,-300.0:22:99:371:4 0/0:0.0,-190.6,-300.0:22:99:613:6 0/0:0.0,-231.87,-300.0:22:99:747:4 0/0:0.0,-56.12,-300.0:6:99:184:1 0/0:0.0,-72.13,-300.0:6:99:235:2 0/0:0.0,-50.15,-300.0:4:99:162:1 0/0:0.0,-72.31,-300.0:6:99:242:0 0/0:0.0,-66.41,-300.0:5:99:217:2 0/0:0.0,-58.88,-300.0:6:99:187:0 0/0:0.0,-26.95,-300.0:5:99:83:1 0/0:0.0,-57.05,-300.0:6:99:187:3 0/0:0.0,-65.59,-300.0:6:99:216:2 0/0:0.0,-62.19,-300.0:7:99:204:2 0/0:0.0,-51.05,-300.0:11:99:167:2 0/0:0.0,-71.2,-300.0:8:99:233:4 0/0:0.0,-39.01,-300.0:7:99:121:0 0/0:0.0,-49.55,-300.0:8:99:160:0 0/0:0.0,-38.41,-300.0:9:99:122:2 0/0:0.0,-69.7,-300.0:7:99:223:0 0/0:0.0,-56.84,-300.0:10:99:190:0 0/0:0.0,-140.69,-300.0:19:99:467:1 0/0:0.0,-136.64,-300.0:22:99:449:0 0/0:0.0,-197.88,-300.0:23:99:661:3 0/0:0.0,-277.0,-300.0:23:99:948:6 chrXII 515195 . G GAAAAAAAAA 514 badReads;QD;alleleBias BRF=0.02;FR=0.0102;HP=9;HapScore=1;MGOF=24;MMLQ=12;MQ=59.97;NF=49;NR=88;PP=514;QD=3.85401459854;SC=GGTTAGCTTCGAAAAAAAAAT;SbPval=1.0;Source=Platypus;TC=18537;TCF=8297;TCR=10240;TR=137;WE=515217;WS=515175 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-12.98,-300.0:23:99:364:9 0/0:0.0,-71.22,-300.0:2:99:239:1 0/0:0.0,-56.17,-300.0:1:99:166:0 0/0:0.0,-32.69,-300.0:0:99:96:0 1/0:-53.19,0.0,-300.0:22:99:361:5 0/0:0.0,-38.41,-300.0:0:99:123:0 0/0:0.0,-48.35,-300.0:2:99:151:0 0/0:0.0,-34.8,-300.0:2:99:107:0 0/0:0.0,-51.43,-300.0:8:99:169:1 0/0:0.0,-121.06,-300.0:21:99:387:5 0/0:0.0,-147.89,-300.0:19:99:481:5 0/0:0.0,-131.88,-300.0:24:99:425:0 0/0:0.0,-150.37,-300.0:23:99:484:3 0/0:0.0,-168.62,-300.0:24:99:547:5 0/0:0.0,-111.54,-300.0:21:99:371:3 0/0:0.0,-200.17,-300.0:19:99:643:4 0/0:0.0,-151.78,-300.0:18:99:486:1 0/0:0.0,-142.57,-300.0:18:99:462:4 0/0:0.0,-158.53,-300.0:17:99:515:5 0/0:0.0,-300.0,-300.0:22:99:1729:13 0/0:0.0,-155.99,-300.0:17:99:516:6 0/0:0.0,-243.26,-300.0:20:99:810:6 0/0:0.0,-147.06,-300.0:19:99:491:3 0/0:0.0,-197.17,-300.0:22:99:636:6 0/0:0.0,-125.53,-300.0:23:99:421:6 0/0:0.0,-113.29,-300.0:22:99:370:4 0/0:0.0,-190.6,-300.0:23:99:618:7 0/0:0.0,-231.87,-300.0:22:99:743:4 0/0:0.0,-56.12,-300.0:6:99:180:1 0/0:0.0,-72.13,-300.0:6:99:230:3 0/0:0.0,-50.15,-300.0:4:99:158:0 0/0:0.0,-72.31,-300.0:6:99:241:0 0/0:0.0,-66.41,-300.0:5:99:207:2 0/0:0.0,-58.88,-300.0:6:99:188:0 0/0:0.0,-26.95,-300.0:5:99:80:1 0/0:0.0,-57.05,-300.0:6:99:180:3 0/0:0.0,-65.59,-300.0:6:99:211:2 0/0:0.0,-62.19,-300.0:7:99:195:2 0/0:0.0,-51.05,-300.0:11:99:163:2 0/0:0.0,-71.2,-300.0:8:99:234:4 0/0:0.0,-39.01,-300.0:7:99:124:0 0/0:0.0,-49.55,-300.0:8:99:151:0 0/0:0.0,-38.41,-300.0:9:99:123:1 0/0:0.0,-69.7,-300.0:7:99:230:0 0/0:0.0,-56.84,-300.0:10:99:194:0 0/0:0.0,-140.69,-300.0:19:99:470:1 0/0:0.0,-136.64,-300.0:22:99:434:0 0/0:0.0,-197.88,-300.0:23:99:678:3 0/0:0.0,-277.0,-300.0:23:99:955:6 chrXII 522257 . C A 1216 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=12;HapScore=1;MGOF=36;MMLQ=12;MQ=59.97;NF=43;NR=727;PP=1216;QD=1.62437819811;SC=GTTTTCATATCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=18227;TCF=8605;TCR=9622;TR=770;WE=522280;WS=522199 GT:GL:GOF:GQ:NR:NV 1/0:-67.19,0.0,-300.0:36:99:386:71 0/0:0.0,-44.43,-300.0:1:99:194:12 0/0:0.0,-33.12,-300.0:2:99:137:6 0/0:0.0,-22.16,-228.76:3:99:95:4 1/0:-58.72,0.0,-300.0:35:99:318:59 0/0:0.0,-28.06,-269.66:1:99:107:2 0/0:0.0,-28.14,-300.0:2:99:121:7 0/0:0.0,-23.98,-270.76:2:99:106:3 0/0:0.0,-41.15,-300.0:15:99:167:6 0/0:0.0,-76.2,-300.0:20:99:345:14 0/0:0.0,-106.12,-300.0:20:99:492:24 0/0:0.0,-111.48,-300.0:20:99:442:13 0/0:0.0,-128.13,-300.0:22:99:549:22 0/0:0.0,-141.1,-300.0:25:99:601:23 0/0:0.0,-90.9,-300.0:24:99:377:13 0/0:0.0,-172.53,-300.0:22:99:681:18 0/0:0.0,-112.45,-300.0:22:99:480:18 0/0:0.0,-119.84,-300.0:20:99:453:11 0/0:0.0,-117.79,-300.0:22:99:518:24 0/0:0.0,-300.0,-300.0:24:99:1744:55 0/0:0.0,-122.69,-300.0:17:99:496:14 0/0:0.0,-166.72,-300.0:21:99:804:44 0/0:0.0,-132.84,-300.0:21:99:527:12 0/0:0.0,-157.3,-300.0:22:99:701:31 0/0:0.0,-105.19,-300.0:21:99:436:15 0/0:0.0,-69.45,-300.0:22:99:355:17 0/0:0.0,-142.19,-300.0:19:99:581:20 0/0:0.0,-196.04,-300.0:22:99:775:20 0/0:0.0,-31.87,-300.0:17:99:139:5 0/0:0.0,-35.98,-300.0:15:99:172:10 0/0:0.0,-34.03,-300.0:9:99:125:3 0/0:0.0,-46.33,-300.0:11:99:179:5 0/0:0.0,-38.04,-300.0:12:99:180:9 0/0:0.0,-41.05,-300.0:11:99:161:5 0/0:0.0,-13.5,-186.36:16:99:77:5 0/0:0.0,-34.89,-300.0:14:99:149:5 0/0:0.0,-40.93,-300.0:15:99:188:10 0/0:0.0,-38.08,-300.0:11:99:139:2 0/0:0.0,-24.55,-290.96:13:99:126:9 0/0:0.0,-62.36,-300.0:16:99:242:7 0/0:0.0,-30.36,-300.0:16:99:133:7 0/0:0.0,-29.93,-300.0:8:99:115:4 0/0:0.0,-35.91,-300.0:14:99:124:2 0/0:0.0,-45.02,-300.0:14:99:190:8 0/0:0.0,-44.46,-300.0:14:99:191:7 0/0:0.0,-100.09,-300.0:20:99:451:17 0/0:0.0,-107.24,-300.0:23:99:454:16 0/0:0.0,-151.37,-300.0:22:99:658:22 0/0:0.0,-244.91,-300.0:22:99:1046:34 chrXII 528749 . T A 2965 PASS BRF=0.02;FR=1.0000;HP=3;HapScore=1;MGOF=12;MMLQ=34;MQ=59.98;NF=9088;NR=9072;PP=2965;QD=20;SC=TATATGGTTTTACGAAGAAGC;SbPval=0.5;Source=Platypus;TC=18310;TCF=9139;TCR=9171;TR=18160;WE=528757;WS=528739 GT:GL:GOF:GQ:NR:NV 1/1:-300.0,-194.02,0.0:10:99:479:473 1/1:-300.0,-112.05,0.0:1:99:198:198 1/1:-300.0,-100.61,0.0:0:99:159:159 1/1:-300.0,-84.66,0.0:0:99:103:103 1/1:-300.0,-180.89,0.0:8:99:439:434 1/1:-300.0,-82.83,0.0:0:99:96:96 1/1:-300.0,-97.52,0.0:1:99:152:151 1/1:-300.0,-84.36,0.0:1:99:102:102 1/1:-300.0,-104.83,0.0:1:99:175:175 1/1:-300.0,-155.66,0.0:11:99:351:348 1/1:-300.0,-206.23,0.0:9:99:516:512 1/1:-300.0,-181.0,0.0:12:99:429:424 1/1:-300.0,-196.46,0.0:10:99:489:485 1/1:-300.0,-217.84,0.0:12:99:554:546 1/1:-300.0,-172.74,0.0:10:99:401:398 1/1:-300.0,-256.54,0.0:10:99:697:688 1/1:-300.0,-185.89,0.0:11:99:453:449 1/1:-300.0,-202.89,0.0:9:99:515:509 1/1:-300.0,-200.33,0.0:9:99:510:507 1/1:-300.0,-300.0,0.0:10:99:1663:1645 1/1:-300.0,-203.77,0.0:10:99:508:504 1/1:-300.0,-293.37,0.0:8:99:819:808 1/1:-300.0,-189.89,0.0:11:99:466:462 1/1:-300.0,-249.05,0.0:12:99:656:652 1/1:-300.0,-183.33,0.0:11:99:441:433 1/1:-300.0,-142.49,0.0:12:99:304:300 1/1:-300.0,-238.17,0.0:10:99:625:621 1/1:-300.0,-255.02,0.0:10:99:690:686 1/1:-300.0,-109.04,0.0:2:99:191:191 1/1:-300.0,-109.64,0.0:2:99:204:204 1/1:-300.0,-100.61,0.0:0:99:159:158 1/1:-300.0,-104.83,0.0:2:99:168:168 1/1:-300.0,-107.84,0.0:2:99:185:185 1/1:-300.0,-99.71,0.0:2:99:156:156 1/1:-300.0,-78.94,0.0:1:99:84:84 1/1:-300.0,-98.51,0.0:2:99:156:155 1/1:-300.0,-104.53,0.0:1:99:169:169 1/1:-300.0,-106.93,0.0:2:99:180:180 1/1:-300.0,-104.53,0.0:8:99:169:169 1/1:-300.0,-122.59,0.0:2:99:230:230 1/1:-300.0,-93.39,0.0:1:99:133:133 1/1:-300.0,-101.22,0.0:2:99:159:159 1/1:-300.0,-88.57,0.0:3:99:115:115 1/1:-300.0,-117.89,0.0:2:99:234:232 1/1:-300.0,-115.36,0.0:1:99:225:223 1/1:-300.0,-180.89,0.0:12:99:435:431 1/1:-300.0,-178.57,0.0:11:99:422:420 1/1:-300.0,-234.7,0.0:11:99:609:602 1/1:-300.0,-300.0,0.0:11:99:937:928 chrXII 535166 . CAAAATC AAAAAAA 2070 badReads;alleleBias BRF=0.03;FR=0.0204;HP=4;HapScore=1;MGOF=35;MMLQ=12;MQ=59.96;NF=0;NR=94;PP=2070;QD=22.6964667539;SC=GTACTCATTGCAAAATCAAAA;SbPval=1.0;Source=Platypus;TC=19568;TCF=9855;TCR=9713;TR=94;WE=535182;WS=535152 GT:GL:GOF:GQ:NR:NV 1/0:-104.86,0.0,-300.0:35:99:328:28 0/0:0.0,-52.09,-300.0:2:99:216:2 0/0:0.0,-39.16,-300.0:1:99:158:1 0/0:0.0,-19.58,-300.0:3:99:99:2 1/0:-109.39,0.0,-300.0:28:99:296:35 0/0:0.0,-29.09,-300.0:1:99:117:2 0/0:0.0,-34.78,-300.0:2:99:153:3 0/0:0.0,-26.22,-300.0:2:99:116:2 0/0:0.0,-42.95,-300.0:21:99:192:0 0/0:0.0,-127.64,-300.0:23:99:439:1 0/0:0.0,-141.15,-300.0:19:99:528:0 0/0:0.0,-115.55,-300.0:20:99:467:3 0/0:0.0,-163.33,-300.0:22:99:545:0 0/0:0.0,-177.14,-300.0:21:99:639:0 0/0:0.0,-110.41,-300.0:21:99:442:0 0/0:0.0,-200.7,-300.0:19:99:754:0 0/0:0.0,-147.16,-300.0:23:99:514:0 0/0:0.0,-143.95,-300.0:19:99:482:0 0/0:0.0,-160.98,-300.0:19:99:566:0 0/0:0.0,-300.0,-300.0:21:99:1902:1 0/0:0.0,-161.84,-300.0:20:99:542:0 0/0:0.0,-221.75,-300.0:18:99:811:1 0/0:0.0,-132.94,-300.0:19:99:518:0 0/0:0.0,-189.04,-300.0:21:99:750:1 0/0:0.0,-130.45,-300.0:20:99:458:0 0/0:0.0,-127.11,-300.0:20:99:433:0 0/0:0.0,-189.07,-300.0:21:99:658:0 0/0:0.0,-227.87,-300.0:21:99:810:3 0/0:0.0,-30.4,-300.0:24:99:145:2 0/0:0.0,-47.27,-300.0:16:99:189:1 0/0:0.0,-42.24,-300.0:19:99:153:0 0/0:0.0,-64.32,-300.0:20:99:227:0 0/0:0.0,-50.33,-300.0:29:99:190:0 0/0:0.0,-40.12,-300.0:16:99:167:1 0/0:0.0,-19.25,-300.0:16:99:62:0 0/0:0.0,-42.46,-300.0:24:99:167:0 0/0:0.0,-55.09,-300.0:17:99:198:0 0/0:0.0,-50.14,-300.0:21:99:186:0 0/0:0.0,-51.63,-300.0:20:99:184:0 0/0:0.0,-63.02,-300.0:20:99:236:0 0/0:0.0,-39.33,-300.0:18:99:128:0 0/0:0.0,-35.65,-300.0:24:99:138:0 0/0:0.0,-36.09,-300.0:15:99:139:1 0/0:0.0,-47.29,-300.0:21:99:174:0 0/0:0.0,-40.52,-300.0:20:99:168:0 0/0:0.0,-130.42,-300.0:23:99:477:1 0/0:0.0,-137.71,-300.0:23:99:494:1 0/0:0.0,-221.57,-300.0:23:99:798:1 0/0:0.0,-270.0,-300.0:23:99:1015:1 chrXII 545933 . CT CTT,TT 2392 badReads;QD;alleleBias BRF=0.03;FR=0.0102,0.1734;HP=19;HapScore=1;MGOF=33;MMLQ=12;MQ=59.84;NF=265,35;NR=220,1590;PP=277,2392;QD=0.577319587629;SC=TGAAAATTTTCTTTTTTTTTT;SbPval=0.65;Source=Platypus;TC=19182;TCF=9462;TCR=9720;TR=485,1625;WE=545998;WS=545912 GT:GL:GOF:GQ:NR:NV 0/1:-1,-1,-1:30:99:393,366:6,39 0/0:-1,-1,-1:2:99:227,202:13,27 0/0:-1,-1,-1:2:99:173,166:10,29 0/0:-1,-1,-1:3:83:88,77:9,14 0/0:-1,-1,-1:23:99:320,311:6,23 0/0:-1,-1,-1:2:99:100,100:4,14 0/0:-1,-1,-1:2:99:144,133:8,16 0/0:-1,-1,-1:2:99:135,111:4,16 0/2:-1,-1,-1:17:99:141,112:6,30 0/0:-1,-1,-1:25:99:430,408:10,23 0/0:-1,-1,-1:25:99:561,548:10,45 0/0:-1,-1,-1:25:99:498,492:7,30 0/0:-1,-1,-1:25:99:491,455:8,27 0/0:-1,-1,-1:30:99:633,605:16,49 0/0:-1,-1,-1:23:99:403,386:9,28 0/0:-1,-1,-1:26:99:766,733:17,47 0/0:-1,-1,-1:24:99:519,513:14,36 0/0:-1,-1,-1:26:99:509,490:12,33 0/0:-1,-1,-1:26:99:595,579:18,35 0/0:-1,-1,-1:25:99:1905,1842:42,133 0/0:-1,-1,-1:31:99:472,452:6,27 0/0:-1,-1,-1:25:99:913,888:27,61 0/0:-1,-1,-1:29:99:557,529:12,38 0/0:-1,-1,-1:25:99:792,763:20,57 0/0:-1,-1,-1:29:99:494,477:9,29 0/0:-1,-1,-1:26:99:444,445:7,27 0/0:-1,-1,-1:26:99:704,671:23,41 0/0:-1,-1,-1:28:99:927,864:18,49 0/2:-1,-1,-1:20:29:115,91:2,15 0/2:-1,-1,-1:23:97:140,139:5,28 0/2:-1,-1,-1:21:99:136,121:2,29 0/2:-1,-1,-1:14:99:173,143:3,32 0/2:-1,-1,-1:20:99:141,119:4,32 0/2:-1,-1,-1:20:99:146,129:2,39 0/2:-1,-1,-1:16:99:90,76:3,21 0/2:-1,-1,-1:22:94:142,123:3,25 0/2:-1,-1,-1:22:82:157,130:4,27 0/2:-1,-1,-1:22:99:179,154:9,36 0/2:-1,-1,-1:20:99:146,125:5,32 0/2:-1,-1,-1:19:99:154,137:5,28 0/2:-1,-1,-1:21:87:107,90:5,19 0/2:-1,-1,-1:17:99:110,95:4,25 0/2:-1,-1,-1:21:24:113,93:4,19 0/0:-1,-1,-1:22:49:139,117:3,18 0/2:-1,-1,-1:16:99:153,148:6,27 0/0:-1,-1,-1:26:99:523,505:8,34 0/0:-1,-1,-1:28:99:435,438:12,25 0/0:-1,-1,-1:33:99:621,603:19,42 0/0:-1,-1,-1:27:99:928,882:26,49 chrXII 545948 . TC T 277 badReads;QD;alleleBias BRF=0.03;FR=0.0102;HP=14;HapScore=1;MGOF=33;MMLQ=12;MQ=59.86;NF=264;NR=224;PP=277;QD=0.573770491803;SC=TTTTTTTTTTTCAAAGTGAAA;SbPval=0.56;Source=Platypus;TC=17236;TCF=8256;TCR=8980;TR=488;WE=545998;WS=545912 GT:GL:GOF:GQ:NR:NV 0/1:-28.17,0.0,-300.0:30:99:332:6 0/0:0.0,-57.03,-300.0:2:99:201:14 0/0:0.0,-44.34,-300.0:2:99:162:11 0/0:0.0,-24.15,-247.71:3:99:79:10 0/0:0.0,-14.57,-300.0:23:99:258:6 0/0:0.0,-23.33,-252.41:2:99:83:3 0/0:0.0,-35.86,-300.0:2:99:125:9 0/0:0.0,-30.54,-300.0:2:99:114:4 0/0:0.0,-48.34,-300.0:17:99:134:6 0/0:0.0,-56.38,-300.0:25:99:398:10 0/0:0.0,-65.05,-300.0:25:99:506:11 0/0:0.0,-77.99,-300.0:25:99:455:8 0/0:0.0,-73.33,-300.0:25:99:438:8 0/0:0.0,-91.32,-300.0:30:99:551:16 0/0:0.0,-49.11,-300.0:23:99:355:9 0/0:0.0,-129.72,-300.0:26:99:687:16 0/0:0.0,-79.97,-300.0:24:99:453:14 0/0:0.0,-84.28,-300.0:26:99:472:12 0/0:0.0,-86.98,-300.0:26:99:524:17 0/0:0.0,-248.14,-300.0:25:99:1716:43 0/0:0.0,-85.06,-300.0:31:99:421:6 0/0:0.0,-139.2,-300.0:25:99:833:27 0/0:0.0,-88.52,-300.0:29:99:511:12 0/0:0.0,-116.74,-300.0:25:99:709:20 0/0:0.0,-69.99,-300.0:29:99:438:9 0/0:0.0,-80.65,-300.0:26:99:397:7 0/0:0.0,-99.54,-300.0:26:99:618:23 0/0:0.0,-131.03,-300.0:28:99:850:17 0/0:0.0,-23.38,-249.68:20:99:105:2 0/0:0.0,-30.74,-300.0:23:99:139:5 0/0:0.0,-42.16,-291.7:21:99:127:2 0/0:0.0,-47.59,-300.0:14:99:168:3 0/0:0.0,-53.29,-300.0:20:99:129:4 0/0:0.0,-58.59,-300.0:20:99:135:2 0/0:0.0,-37.78,-228.01:16:99:83:3 0/0:0.0,-32.12,-297.71:22:99:130:3 0/0:0.0,-37.76,-300.0:22:99:141:4 0/0:0.0,-58.34,-300.0:22:99:165:9 0/0:0.0,-41.83,-300.0:20:99:127:5 0/0:0.0,-33.55,-300.0:19:99:133:5 0/0:0.0,-24.64,-238.3:21:99:97:5 0/0:0.0,-28.62,-242.05:17:99:99:5 0/0:0.0,-26.89,-254.45:21:99:104:4 0/0:0.0,-22.05,-300.0:22:99:131:4 0/0:0.0,-42.47,-300.0:16:99:138:6 0/0:0.0,-78.49,-300.0:26:99:475:10 0/0:0.0,-78.08,-300.0:28:99:393:10 0/0:0.0,-68.86,-300.0:33:99:568:18 0/0:0.0,-131.55,-300.0:27:99:829:25 chrXII 550357 . GC G 447 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=3;HapScore=1;MGOF=22;MMLQ=12;MQ=59.95;NF=188;NR=199;PP=447;QD=1.2817335914;SC=CCTTATGTAGGCCCAAAAAAA;SbPval=0.5;Source=Platypus;TC=18278;TCF=9262;TCR=9016;TR=387;WE=550416;WS=550325 GT:GL:GOF:GQ:NR:NV 1/0:-24.37,0.0,-300.0:22:99:320:4 0/0:0.0,-55.31,-300.0:2:99:178:10 0/0:0.0,-39.12,-300.0:1:99:127:7 0/0:0.0,-23.55,-239.96:1:99:80:4 1/0:-26.1,0.0,-300.0:20:99:290:3 0/0:0.0,-25.95,-267.86:1:99:89:2 0/0:0.0,-45.58,-300.0:2:99:151:4 0/0:0.0,-28.35,-299.56:1:99:90:4 0/0:0.0,-51.84,-300.0:15:99:177:6 0/0:0.0,-102.85,-300.0:19:99:446:5 0/0:0.0,-116.81,-300.0:19:99:532:6 0/0:0.0,-99.4,-300.0:19:99:476:8 0/0:0.0,-134.81,-300.0:19:99:576:4 0/0:0.0,-123.74,-300.0:20:99:572:10 0/0:0.0,-83.13,-300.0:22:99:399:9 0/0:0.0,-143.6,-300.0:19:99:713:12 0/0:0.0,-110.92,-300.0:18:99:476:6 0/0:0.0,-115.91,-300.0:22:99:500:8 0/0:0.0,-129.36,-300.0:16:99:549:11 0/0:0.0,-300.0,-300.0:20:99:1809:38 0/0:0.0,-107.19,-300.0:19:99:530:10 0/0:0.0,-191.83,-300.0:20:99:868:9 0/0:0.0,-116.16,-300.0:20:99:446:11 0/0:0.0,-150.24,-300.0:20:99:693:14 0/0:0.0,-106.68,-300.0:21:99:456:11 0/0:0.0,-87.43,-300.0:16:99:363:6 0/0:0.0,-155.58,-300.0:18:99:642:16 0/0:0.0,-146.25,-300.0:19:99:746:13 0/0:0.0,-27.57,-300.0:16:99:151:8 0/0:0.0,-50.57,-300.0:12:99:206:8 0/0:0.0,-31.05,-300.0:17:99:126:3 0/0:0.0,-48.98,-300.0:15:99:185:10 0/0:0.0,-42.32,-300.0:11:99:152:4 0/0:0.0,-39.53,-300.0:13:99:157:4 0/0:0.0,-23.41,-242.36:9:99:86:2 0/0:0.0,-37.57,-300.0:13:99:150:6 0/0:0.0,-39.94,-300.0:9:99:178:7 0/0:0.0,-39.52,-300.0:17:99:147:3 0/0:0.0,-37.18,-300.0:15:99:156:9 0/0:0.0,-45.21,-300.0:13:99:191:4 0/0:0.0,-35.36,-300.0:10:99:131:3 0/0:0.0,-32.7,-300.0:15:99:130:10 0/0:0.0,-37.15,-300.0:15:99:125:4 0/0:0.0,-44.46,-300.0:12:99:165:6 0/0:0.0,-45.91,-300.0:16:99:167:3 0/0:0.0,-93.45,-300.0:21:99:465:5 0/0:0.0,-93.23,-300.0:21:99:407:9 0/0:0.0,-139.68,-300.0:20:99:650:14 0/0:0.0,-189.73,-300.0:21:99:859:14 chrXII 550360 . C CA 493 badReads;QD;alleleBias BRF=0.02;FR=0.0204;HP=13;HapScore=1;MGOF=22;MMLQ=12;MQ=59.96;NF=184;NR=208;PP=493;QD=1.27040816327;SC=TATGTAGGCCCAAAAAAAAAA;SbPval=0.6;Source=Platypus;TC=19456;TCF=9691;TCR=9765;TR=392;WE=550416;WS=550325 GT:GL:GOF:GQ:NR:NV 1/0:-24.37,0.0,-300.0:22:99:341:4 0/0:0.0,-55.31,-257.84:2:99:195:10 0/0:0.0,-39.12,-200.95:1:99:147:7 0/0:0.0,-23.55,-139.38:1:99:84:4 1/0:-26.1,0.0,-279.11:20:99:320:2 0/0:0.0,-25.95,-149.52:2:99:98:2 0/0:0.0,-45.58,-233.94:2:99:159:4 0/0:0.0,-28.35,-148.28:1:99:101:4 0/0:0.0,-51.84,-275.64:15:99:190:6 0/0:0.0,-102.85,-300.0:19:99:456:6 0/0:0.0,-116.81,-300.0:19:99:550:6 0/0:0.0,-99.4,-300.0:19:99:514:9 0/0:0.0,-134.81,-300.0:19:99:618:7 0/0:0.0,-123.74,-300.0:20:99:608:10 0/0:0.0,-83.13,-300.0:22:99:438:11 0/0:0.0,-143.6,-300.0:19:99:762:13 0/0:0.0,-110.92,-300.0:18:99:517:6 0/0:0.0,-115.91,-300.0:22:99:529:8 0/0:0.0,-129.36,-300.0:16:99:585:12 0/0:0.0,-300.0,-300.0:20:99:1903:38 0/0:0.0,-107.19,-300.0:19:99:577:10 0/0:0.0,-191.83,-300.0:20:99:925:10 0/0:0.0,-116.16,-300.0:20:99:473:11 0/0:0.0,-150.24,-300.0:20:99:738:14 0/0:0.0,-106.68,-300.0:21:99:491:11 0/0:0.0,-87.43,-300.0:16:99:380:6 0/0:0.0,-155.58,-300.0:18:99:672:15 0/0:0.0,-146.25,-300.0:19:99:809:12 0/0:0.0,-27.57,-216.82:16:99:158:7 0/0:0.0,-50.57,-300.0:12:99:212:7 0/0:0.0,-31.05,-182.79:17:99:125:3 0/0:0.0,-48.98,-272.72:15:99:200:10 0/0:0.0,-42.32,-226.36:11:99:163:4 0/0:0.0,-39.53,-238.15:13:99:163:4 0/0:0.0,-23.41,-136.7:9:99:86:2 0/0:0.0,-37.57,-214.26:13:99:153:6 0/0:0.0,-39.94,-242.46:9:99:181:7 0/0:0.0,-39.52,-220.57:17:99:149:3 0/0:0.0,-37.18,-228.09:15:99:169:9 0/0:0.0,-45.21,-262.55:13:99:204:4 0/0:0.0,-35.36,-207.59:10:99:137:3 0/0:0.0,-32.7,-195.9:15:99:137:10 0/0:0.0,-37.15,-197.62:15:99:131:4 0/0:0.0,-44.46,-252.17:12:99:178:6 0/0:0.0,-45.91,-269.21:16:99:181:3 0/0:0.0,-93.45,-300.0:21:99:503:5 0/0:0.0,-93.23,-300.0:21:99:430:9 0/0:0.0,-139.68,-300.0:20:99:696:14 0/0:0.0,-189.73,-300.0:21:99:920:14 chrXII 556468 . C CAT 21 badReads;QD;alleleBias BRF=0.03;FR=0.0102;HP=2;HapScore=1;MGOF=27;MMLQ=10;MQ=59.9;NF=198;NR=196;PP=21;QD=0.0634517766497;SC=ACATGTACGACATATATATAT;SbPval=0.2;Source=Platypus;TC=18791;TCF=9001;TCR=9790;TR=394;WE=556479;WS=556425 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-75.91,-300.0:19:99:390:6 0/0:0.0,-7.82,-300.0:4:78:164:11 0/0:0.0,-9.35,-265.37:3:93:110:7 0/0:0.0,-12.64,-239.57:3:99:89:3 0/0:0.0,-75.85,-300.0:19:99:386:9 0/0:0.0,-8.33,-197.97:1:83:71:3 1/0:-2.72,0.0,-300.0:3:27:127:10 0/0:0.0,-17.66,-300.0:2:99:100:3 0/0:0.0,-35.44,-300.0:10:99:187:3 0/0:0.0,-58.31,-300.0:21:99:370:9 0/0:0.0,-116.27,-300.0:21:99:563:9 0/0:0.0,-101.18,-300.0:20:99:429:5 0/0:0.0,-83.64,-300.0:20:99:434:8 0/0:0.0,-106.55,-300.0:25:99:570:11 0/0:0.0,-90.6,-300.0:18:99:415:2 0/0:0.0,-132.29,-300.0:19:99:707:19 0/0:0.0,-82.45,-300.0:25:99:486:13 0/0:0.0,-81.44,-300.0:20:99:459:5 0/0:0.0,-99.51,-300.0:20:99:586:14 0/0:0.0,-300.0,-300.0:22:99:1755:26 0/0:0.0,-85.41,-300.0:22:99:480:10 0/0:0.0,-179.42,-300.0:18:99:883:18 0/0:0.0,-93.69,-300.0:27:99:539:11 0/0:0.0,-148.8,-300.0:21:99:710:17 0/0:0.0,-92.43,-300.0:21:99:459:10 0/0:0.0,-71.61,-300.0:15:99:390:8 0/0:0.0,-123.82,-300.0:20:99:583:8 0/0:0.0,-168.83,-300.0:23:99:787:12 0/0:0.0,-27.72,-300.0:18:99:153:6 0/0:0.0,-37.63,-300.0:9:99:179:5 0/0:0.0,-34.51,-300.0:15:99:170:3 0/0:0.0,-39.74,-300.0:11:99:198:5 0/0:0.0,-36.63,-300.0:15:99:184:4 0/0:0.0,-45.64,-300.0:10:99:200:4 0/0:0.0,-21.77,-300.0:14:99:100:2 0/0:0.0,-30.87,-300.0:15:99:177:4 0/0:0.0,-36.93,-300.0:13:99:182:3 0/0:0.0,-46.65,-300.0:15:99:197:6 0/0:0.0,-39.04,-300.0:15:99:186:5 0/0:0.0,-46.54,-300.0:12:99:211:7 0/0:0.0,-25.74,-300.0:13:99:139:4 0/0:0.0,-28.2,-300.0:14:99:129:4 0/0:0.0,-26.83,-300.0:12:99:126:2 0/0:0.0,-36.11,-300.0:13:99:154:2 0/0:0.0,-30.15,-300.0:13:99:195:9 0/0:0.0,-81.49,-300.0:19:99:493:12 0/0:0.0,-90.24,-300.0:19:99:513:8 0/0:0.0,-139.91,-300.0:23:99:669:14 0/0:0.0,-213.82,-300.0:24:99:1007:15 chrXII 568017 . C CT 16 Q20;QD;alleleBias BRF=0.03;FR=0.0193;HP=15;HapScore=1;MGOF=33;MMLQ=16;MQ=59.93;NF=147;NR=124;PP=16;QD=0.0738007380074;SC=CTGGTATTGTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=18554;TCF=9810;TCR=8744;TR=271;WE=568029;WS=568003 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-48.23,-300.0:29:99:331:4 0/0:0.0,-52.93,-214.92:2:99:179:6 0/0:0.0,-37.8,-180.63:2:99:139:5 0/0:0.0,-23.34,-121.5:1:99:71:1 0/0:0.0,-45.18,-300.0:30:99:285:2 0/0:0.0,-30.19,-141.01:2:99:102:9 0/0:0.0,-38.81,-177.8:1:99:133:3 0/0:0.0,-26.22,-137.76:1:99:85:3 0/0:0.0,-11.44,-176.71:25:99:141:3 0/0:0.0,-104.96,-300.0:23:99:382:4 0/0:0.0,-149.83,-300.0:24:99:537:7 0/0:0.0,-129.47,-300.0:27:99:488:7 0/0:0.0,-148.81,-300.0:27:99:554:4 0/0:0.0,-159.65,-300.0:30:99:609:9 0/0:0.0,-105.8,-300.0:30:99:381:4 0/0:0.0,-186.93,-300.0:25:99:713:8 0/0:0.0,-128.99,-300.0:26:99:502:9 0/0:0.0,-132.45,-300.0:28:99:500:4 0/0:0.0,-151.67,-300.0:23:99:588:9 0/0:0.0,-300.0,-300.0:26:99:1839:12 0/0:0.0,-128.43,-300.0:25:99:496:9 0/0:0.0,-223.12,-300.0:26:99:846:10 0/0:0.0,-150.75,-300.0:25:99:556:3 0/0:0.0,-199.96,-300.0:28:99:737:8 0/0:0.0,-126.12,-300.0:26:99:469:6 0/0:0.0,-95.27,-300.0:22:99:362:2 0/0:0.0,-161.09,-300.0:28:99:618:11 0/0:0.0,-200.32,-300.0:29:99:800:14 0/1:-0.32,0.0,-161.25:28:5:132:2 0/0:0.0,-7.37,-167.4:29:74:142:4 0/0:0.0,-17.63,-194.31:25:99:150:5 0/0:0.0,-11.71,-169.94:27:99:133:1 0/0:0.0,-3.66,-138.32:28:37:114:3 0/0:0.0,-4.46,-155.05:31:45:134:4 0/0:0.0,-1.24,-107.59:28:13:83:2 0/0:0.0,-2.44,-146.3:33:24:128:1 0/0:0.0,-17.98,-199.09:26:99:154:3 0/0:0.0,-18.59,-190.84:28:99:151:4 0/0:0.0,-16.26,-171.79:25:99:134:5 0/0:0.0,-9.32,-220.26:27:93:209:6 0/1:-0.3,0.0,-141.49:31:5:111:6 0/0:0.0,-10.15,-151.4:31:99:103:4 0/0:0.0,-14.2,-156.74:31:99:119:5 0/0:0.0,-18.53,-228.58:31:99:180:4 0/1:-3.62,0.0,-158.99:30:36:135:1 0/0:0.0,-119.27,-300.0:28:99:490:6 0/0:0.0,-142.37,-300.0:26:99:557:6 0/0:0.0,-176.1,-300.0:27:99:711:9 0/0:0.0,-263.88,-300.0:31:99:1041:14 chrXII 581858 . C T 2923 PASS BRF=0.02;FR=0.0204;HP=2;HapScore=1;MGOF=13;MMLQ=37;MQ=59.98;NF=115;NR=98;PP=2923;QD=20;SC=TATCTGAGAGCGATGAGCTGA;SbPval=0.53;Source=Platypus;TC=18839;TCF=10754;TCR=8085;TR=213;WE=581866;WS=581848 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-122.27,-300.0:7:99:421:3 0/0:0.0,-63.92,-300.0:1:99:211:0 0/0:0.0,-47.93,-300.0:1:99:160:0 0/0:0.0,-27.57,-300.0:1:99:88:0 0/0:0.0,-123.74,-300.0:6:99:430:1 0/0:0.0,-29.57,-300.0:2:99:98:0 0/0:0.0,-39.29,-300.0:1:99:127:0 0/0:0.0,-35.35,-300.0:1:99:113:0 0/0:0.0,-55.26,-300.0:1:99:177:0 0/0:0.0,-115.17,-300.0:12:99:387:1 0/0:0.0,-146.57,-300.0:11:99:498:1 0/0:0.0,-132.7,-300.0:9:99:460:2 0/0:0.0,-159.0,-300.0:13:99:541:1 0/0:0.0,-192.33,-300.0:12:99:643:0 0/0:0.0,-116.81,-300.0:9:99:392:2 0/0:0.0,-223.24,-300.0:12:99:755:1 0/0:0.0,-145.55,-300.0:12:99:488:0 0/0:0.0,-147.45,-300.0:11:99:490:0 0/0:0.0,-144.49,-300.0:9:99:502:1 0/0:0.0,-300.0,-300.0:13:99:1710:2 0/0:0.0,-139.17,-300.0:9:99:473:1 0/0:0.0,-244.11,-300.0:11:99:841:0 0/0:0.0,-142.91,-300.0:11:99:477:0 0/0:0.0,-221.64,-300.0:11:99:759:0 0/0:0.0,-147.06,-300.0:11:99:492:1 0/0:0.0,-114.66,-300.0:10:99:385:0 0/0:0.0,-184.06,-300.0:12:99:630:1 0/0:0.0,-233.04,-300.0:13:99:787:0 0/0:0.0,-46.84,-300.0:2:99:152:0 0/0:0.0,-71.52,-300.0:2:99:244:0 0/0:0.0,-48.04,-300.0:1:99:155:0 0/0:0.0,-64.6,-300.0:1:99:212:0 0/0:0.0,-66.1,-300.0:1:99:219:0 0/0:0.0,-66.38,-300.0:3:99:219:0 0/0:0.0,-20.35,-238.16:2:99:65:0 0/0:0.0,-51.65,-300.0:4:99:168:0 1/1:-296.64,-53.52,0.0:2:99:196:195 0/0:0.0,-59.48,-300.0:1:99:192:0 0/0:0.0,-60.08,-300.0:2:99:198:0 0/0:0.0,-68.51,-300.0:2:99:225:0 0/0:0.0,-41.72,-300.0:2:99:134:0 0/0:0.0,-48.34,-300.0:2:99:154:0 0/0:0.0,-43.83,-300.0:3:99:141:0 0/0:0.0,-68.51,-300.0:4:99:224:0 0/0:0.0,-74.23,-300.0:2:99:251:0 0/0:0.0,-138.33,-300.0:12:99:473:0 0/0:0.0,-109.14,-300.0:9:99:359:0 0/0:0.0,-159.2,-300.0:12:99:538:0 0/0:0.0,-232.48,-300.0:12:99:785:0 chrXII 585080 . ATCTTCTTCTTCTTCTTCACTC A 313 QD;alleleBias BRF=0.04;FR=0.0102;HP=1;HapScore=1;MGOF=34;MMLQ=33;MQ=59.94;NF=28;NR=24;PP=313;QD=6.30769230769;SC=CTTCGTCATCATCTTCTTCTT;SbPval=0.66;Source=Platypus;TC=21851;TCF=9421;TCR=12430;TR=52;WE=585111;WS=585070 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-153.38,-300.0:13:99:529:1 0/0:0.0,-49.85,-300.0:2:99:198:0 0/0:0.0,-49.55,-300.0:1:99:190:2 0/0:0.0,-23.66,-300.0:2:99:93:0 0/0:0.0,-134.39,-300.0:8:99:466:0 0/0:0.0,-24.42,-300.0:2:99:82:0 0/0:0.0,-42.63,-300.0:2:99:150:0 0/0:0.0,-36.61,-300.0:1:99:132:0 0/0:0.0,-64.3,-300.0:2:99:234:1 0/0:0.0,-128.99,-300.0:13:99:457:0 0/0:0.0,-160.58,-300.0:13:99:570:1 0/0:0.0,-156.42,-300.0:12:99:561:1 0/0:0.0,-178.94,-300.0:12:99:648:0 0/0:0.0,-171.47,-300.0:13:99:642:1 0/0:0.0,-134.41,-300.0:17:99:459:2 0/0:0.0,-239.66,-300.0:14:99:838:0 0/0:0.0,-167.17,-300.0:15:99:611:0 0/0:0.0,-181.05,-300.0:16:99:630:1 0/0:0.0,-184.41,-300.0:12:99:642:2 0/0:0.0,-300.0,-300.0:14:99:2114:5 0/0:0.0,-157.44,-300.0:13:99:553:3 0/0:0.0,-272.52,-300.0:16:99:964:2 0/0:0.0,-168.13,-300.0:15:99:579:3 0/0:0.0,-225.3,-300.0:17:99:777:1 0/0:0.0,-143.44,-300.0:12:99:524:1 0/0:0.0,-127.11,-300.0:12:99:464:1 0/0:0.0,-214.96,-300.0:14:99:764:1 0/0:0.0,-253.24,-300.0:13:99:931:2 0/0:0.0,-56.77,-300.0:3:99:209:2 0/0:0.0,-72.73,-300.0:6:99:262:1 0/0:0.0,-53.16,-300.0:3:99:187:0 0/0:0.0,-65.81,-300.0:6:99:245:2 0/0:0.0,-57.08,-300.0:2:99:212:2 0/0:0.0,-59.48,-300.0:3:99:210:0 0/0:0.0,-28.0,-300.0:9:99:102:1 0/0:0.0,-52.26,-300.0:6:99:193:3 0/0:0.0,-58.58,-300.0:4:99:230:0 0/0:0.0,-49.85,-300.0:2:99:198:0 0/0:0.0,-61.59,-300.0:1:99:226:0 0/0:0.0,-68.21,-300.0:2:99:257:0 0/0:0.0,-40.22,-300.0:2:99:154:0 1/0:-33.18,0.0,-300.0:3:99:146:2 0/0:0.0,-41.12,-300.0:3:99:157:0 0/0:0.0,-69.12,-300.0:5:99:245:1 0/0:0.0,-65.2,-300.0:2:99:229:1 0/0:0.0,-171.38,-300.0:14:99:618:2 0/0:0.0,-132.23,-300.0:25:99:443:0 0/0:0.0,-178.97,-300.0:34:99:626:1 0/0:0.0,-263.73,-300.0:25:99:900:3 chrXII 585916 . AG A 126 badReads;QD;alleleBias BRF=0.04;FR=0.0197;HP=2;HapScore=1;MGOF=40;MMLQ=14;MQ=59.5;NF=321;NR=129;PP=126;QD=0.344444444444;SC=TTTAGTGATGAGATGAAAAAA;SbPval=0.01;Source=Platypus;TC=12858;TCF=7877;TCR=4981;TR=450;WE=585978;WS=585888 GT:GL:GOF:GQ:NR:NV 1/0:-15.25,0.0,-300.0:28:99:226:2 0/0:0.0,-39.54,-300.0:2:99:135:15 0/0:0.0,-31.96,-235.11:2:99:104:11 0/0:0.0,-16.36,-126.97:2:99:55:7 0/0:0.0,-13.89,-300.0:24:99:170:2 0/0:0.0,-18.52,-133.37:2:99:63:7 0/0:0.0,-29.55,-210.07:2:99:96:13 0/0:0.0,-19.98,-144.67:2:99:62:11 0/0:0.0,-14.04,-149.37:13:99:74:0 0/0:0.0,-53.87,-300.0:24:99:295:7 0/0:0.0,-41.32,-300.0:27:99:354:17 0/0:0.0,-58.55,-300.0:27:99:359:8 0/0:0.0,-66.7,-300.0:26:99:455:15 0/0:0.0,-67.83,-300.0:28:99:429:16 0/0:0.0,-34.59,-300.0:28:99:333:17 0/0:0.0,-95.08,-300.0:25:99:539:16 0/0:0.0,-58.66,-300.0:27:99:402:10 0/0:0.0,-58.43,-300.0:29:99:364:8 0/0:0.0,-65.05,-300.0:26:99:436:13 0/0:0.0,-187.52,-300.0:27:99:1322:41 0/0:0.0,-84.11,-300.0:24:99:386:19 0/0:0.0,-70.05,-300.0:31:99:628:21 0/0:0.0,-46.98,-300.0:29:99:360:15 0/0:0.0,-69.75,-300.0:28:99:566:19 0/0:0.0,-57.44,-300.0:31:99:351:15 0/0:0.0,-23.74,-300.0:28:99:318:7 0/0:0.0,-74.22,-300.0:27:99:456:13 0/0:0.0,-77.26,-300.0:26:99:642:20 0/0:0.0,-5.88,-121.24:25:59:59:5 1/0:-1.11,0.0,-118.59:16:11:66:2 0/0:0.0,-11.59,-126.48:12:99:57:0 0/0:0.0,-26.32,-238.49:13:99:110:1 0/0:0.0,-19.03,-189.07:17:99:94:3 0/0:0.0,-10.56,-181.14:14:99:93:2 0/0:0.0,-5.76,-79.35:20:58:42:0 0/0:0.0,-12.75,-160.2:14:99:85:2 0/0:0.0,-7.38,-182.83:18:74:79:4 0/0:0.0,-14.99,-159.39:15:99:79:1 0/0:0.0,-16.54,-141.68:14:99:65:1 0/0:0.0,-10.78,-186.18:14:99:98:1 0/0:0.0,-15.07,-133.17:13:99:62:3 0/0:0.0,-18.05,-148.12:16:99:59:2 0/0:0.0,-17.22,-150.05:11:99:68:1 0/0:0.0,-6.18,-117.07:16:62:61:1 0/0:0.0,-14.66,-161.7:21:99:77:2 0/0:0.0,-71.5,-300.0:25:99:389:11 0/0:0.0,-4.05,-300.0:40:40:279:8 0/0:0.0,-26.39,-300.0:39:99:380:13 0/0:0.0,-7.56,-300.0:39:76:576:22 chrXII 585918 . ATG A 126 badReads;QD;alleleBias BRF=0.04;FR=0.0197;HP=1;HapScore=1;MGOF=40;MMLQ=14;MQ=59.38;NF=321;NR=141;PP=126;QD=0.335497835498;SC=TAGTGATGAGATGAAAAAAAA;SbPval=0.01;Source=Platypus;TC=12840;TCF=8027;TCR=4813;TR=462;WE=585978;WS=585888 GT:GL:GOF:GQ:NR:NV 1/0:-15.25,0.0,-300.0:28:99:223:2 0/0:0.0,-39.54,-205.28:2:99:130:15 0/0:0.0,-31.96,-161.22:2:99:102:11 0/0:0.0,-16.36,-99.78:2:99:54:7 0/0:0.0,-13.89,-254.27:24:99:170:2 0/0:0.0,-18.52,-101.08:2:99:57:7 0/0:0.0,-29.55,-146.18:2:99:93:13 0/0:0.0,-19.98,-109.78:2:99:60:11 0/0:0.0,-14.04,-113.97:13:99:71:0 0/0:0.0,-53.87,-300.0:24:99:299:7 0/0:0.0,-41.32,-300.0:27:99:371:17 0/0:0.0,-58.55,-300.0:27:99:355:8 0/0:0.0,-66.7,-300.0:26:99:455:16 0/0:0.0,-67.83,-300.0:28:99:435:17 0/0:0.0,-34.59,-300.0:28:99:334:17 0/0:0.0,-88.52,-300.0:25:99:542:16 0/0:0.0,-58.66,-300.0:27:99:395:11 0/0:0.0,-57.67,-300.0:29:99:367:9 0/0:0.0,-64.88,-300.0:26:99:441:14 0/0:0.0,-180.07,-300.0:27:99:1321:41 0/0:0.0,-81.85,-300.0:24:99:390:19 0/0:0.0,-70.05,-300.0:31:99:624:23 0/0:0.0,-45.51,-300.0:29:99:364:15 0/0:0.0,-69.75,-300.0:28:99:568:19 0/0:0.0,-57.44,-300.0:31:99:352:15 0/0:0.0,-23.74,-300.0:28:99:309:8 0/0:0.0,-74.22,-300.0:27:99:464:12 0/0:0.0,-77.26,-300.0:26:99:640:22 0/0:0.0,-5.88,-98.01:25:59:56:5 1/0:-1.11,0.0,-92.14:16:11:63:2 0/0:0.0,-11.59,-99.76:12:99:57:0 0/0:0.0,-26.32,-164.89:13:99:104:1 0/0:0.0,-19.03,-133.18:17:99:91:3 0/0:0.0,-10.56,-139.39:14:99:90:2 0/0:0.0,-5.76,-64.47:20:58:39:0 0/0:0.0,-12.75,-109.2:14:99:79:2 0/0:0.0,-7.38,-139.93:18:74:77:4 0/0:0.0,-14.99,-125.12:15:99:79:1 0/0:0.0,-16.54,-106.09:14:99:64:2 0/0:0.0,-10.78,-133.08:14:99:96:1 0/0:0.0,-15.07,-102.38:13:99:59:3 0/0:0.0,-18.05,-123.16:16:99:59:2 0/0:0.0,-17.22,-115.55:11:99:64:1 0/0:0.0,-6.18,-91.74:16:62:68:1 0/0:0.0,-14.66,-127.15:21:99:80:2 0/0:0.0,-71.02,-300.0:25:99:391:11 0/0:0.0,-4.05,-300.0:40:40:280:10 0/0:0.0,-26.39,-300.0:39:99:381:13 0/0:0.0,-7.56,-300.0:39:76:577:22 chrXII 585920 . G GA 939 badReads;QD;alleleBias BRF=0.04;FR=0.1466;HP=20;HapScore=1;MGOF=40;MMLQ=14;MQ=59.36;NF=286;NR=131;PP=939;QD=2.25899280576;SC=GTGATGAGATGAAAAAAAAAA;SbPval=0.7;Source=Platypus;TC=15790;TCF=9488;TCR=6302;TR=417;WE=585978;WS=585888 GT:GL:GOF:GQ:NR:NV 1/0:-15.25,0.0,-104.43:28:99:287:3 0/0:0.0,-2.3,-15.55:2:23:150:6 0/0:0.0,-0.43,-7.72:2:6:105:10 0/0:0.0,-3.86,-11.88:2:39:67:5 0/0:0.0,-12.32,-47.24:24:99:226:2 0/0:0.0,-3.11,-9.62:2:31:63:5 0/0:0.0,-4.71,-16.22:2:47:110:7 0/0:0.0,-5.14,-13.5:2:51:67:5 0/0:0.0,-8.85,-27.32:13:88:97:0 0/0:0.0,-48.3,-166.55:24:99:368:7 0/0:0.0,-41.32,-206.25:27:99:461:17 0/0:0.0,-56.8,-195.65:27:99:441:7 0/0:0.0,-66.69,-241.65:26:99:563:15 0/0:0.0,-66.66,-239.75:28:99:546:17 0/0:0.0,-34.59,-173.65:28:99:409:16 0/0:0.0,-88.52,-300.0:25:99:668:14 0/0:0.0,-58.66,-219.35:27:99:494:11 0/0:0.0,-57.67,-212.85:29:99:467:8 0/0:0.0,-64.88,-248.65:26:99:536:13 0/0:0.0,-180.07,-300.0:27:99:1629:40 0/0:0.0,-59.39,-214.55:24:99:496:20 0/0:0.0,-70.05,-300.0:31:99:775:20 0/0:0.0,-45.51,-189.85:29:99:433:14 0/0:0.0,-69.75,-300.0:28:99:687:19 0/0:0.0,-51.5,-185.55:31:99:422:12 0/0:0.0,-23.74,-163.24:28:99:377:9 0/0:0.0,-69.58,-247.05:27:99:562:11 0/0:0.0,-77.26,-300.0:26:99:821:22 1/0:-12.67,0.0,-5.88:25:59:63:5 1/1:-2.01,-1.1,0.0:16:11:70:1 1/0:-5.31,0.0,-10.1:12:53:70:0 1/0:-0.49,0.0,-11.34:13:6:127:1 0/0:0.0,-5.36,-13.42:17:54:103:3 1/0:-5.97,0.0,-10.56:14:60:112:2 1/0:-5.28,0.0,-5.76:20:52:45:0 1/0:-2.12,0.0,-12.89:14:21:91:2 1/0:-18.66,0.0,-7.38:18:74:90:4 ./.:0.0,-0.18,-12.28:15:4:96:1 1/0:-2.61,0.0,-10.37:14:26:81:1 0/0:0.0,-2.75,-14.06:14:28:119:1 0/0:0.0,-3.43,-19.32:13:34:78:3 1/0:-15.85,0.0,-12.65:16:99:71:2 1/0:-4.27,0.0,-10.08:11:43:78:1 0/0:0.0,-5.1,-13.88:16:51:82:1 1/0:-9.62,0.0,-14.67:21:96:94:2 0/0:0.0,-61.4,-213.35:25:99:483:11 0/0:0.0,-4.05,-135.05:40:40:359:10 0/0:0.0,-26.39,-204.15:39:99:468:11 0/0:0.0,-7.56,-257.53:39:76:683:20 chrXII 585942 . AG A 793 badReads;QD;alleleBias BRF=0.04;FR=0.1238;HP=20;HapScore=1;MGOF=40;MMLQ=14;MQ=59.25;NF=283;NR=154;PP=793;QD=1.82151029748;SC=AAAAAAAAAAAGAATTCCAAC;SbPval=0.01;Source=Platypus;TC=16437;TCF=7981;TCR=8456;TR=437;WE=585978;WS=585888 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-40.57,-300.0:28:99:336:2 0/0:0.0,-16.14,-300.0:2:99:154:9 0/0:0.0,-5.32,-263.91:2:53:107:14 0/0:0.0,-8.4,-183.28:2:84:77:12 0/0:0.0,-15.16,-300.0:24:99:272:2 0/0:0.0,-6.4,-184.08:2:64:77:9 0/0:0.0,-8.47,-286.28:2:85:123:13 0/0:0.0,-6.91,-180.28:2:69:77:9 0/0:0.0,-10.77,-253.18:13:99:93:0 0/0:0.0,-81.89,-300.0:24:99:384:7 0/0:0.0,-105.77,-300.0:27:99:503:14 0/0:0.0,-75.03,-300.0:27:99:436:7 0/0:0.0,-73.88,-300.0:26:99:564:16 0/0:0.0,-96.95,-300.0:28:99:579:17 0/0:0.0,-85.62,-300.0:28:99:422:17 0/0:0.0,-129.26,-300.0:25:99:689:15 0/0:0.0,-89.8,-300.0:27:99:521:12 0/0:0.0,-91.23,-300.0:29:99:494:8 0/0:0.0,-114.77,-300.0:26:99:587:14 0/0:0.0,-300.0,-300.0:27:99:1657:38 0/0:0.0,-85.66,-300.0:24:99:505:20 0/0:0.0,-150.59,-300.0:31:99:842:19 0/0:0.0,-70.55,-300.0:29:99:450:14 0/0:0.0,-93.24,-300.0:28:99:728:19 0/0:0.0,-82.4,-300.0:31:99:425:13 0/0:0.0,-79.33,-300.0:28:99:408:9 0/0:0.0,-109.28,-300.0:27:99:578:11 0/0:0.0,-171.88,-300.0:26:99:902:22 1/0:-12.67,0.0,-145.25:25:99:62:5 0/1:-1.73,0.0,-191.31:16:17:82:1 1/0:-5.31,0.0,-153.89:12:53:65:0 1/0:-0.49,0.0,-235.07:13:6:97:0 0/0:0.0,-5.41,-221.88:17:54:87:3 1/0:-5.97,0.0,-233.44:14:60:103:1 1/0:-5.28,0.0,-101.76:20:53:46:0 1/0:-2.12,0.0,-206.5:14:21:84:2 1/0:-18.66,0.0,-185.63:18:99:86:2 ./.:0.0,-0.18,-208.38:15:4:88:1 1/0:-2.61,0.0,-159.38:14:26:64:2 0/0:0.0,-2.75,-300.0:14:28:120:1 0/0:0.0,-3.43,-163.88:13:34:66:3 1/0:-15.85,0.0,-120.52:16:99:57:2 1/0:-4.27,0.0,-174.75:11:43:76:1 0/0:0.0,-5.25,-218.28:16:53:91:1 1/0:-9.62,0.0,-243.2:21:96:103:1 0/0:0.0,-85.85,-300.0:25:99:481:12 0/0:0.0,-68.56,-300.0:40:99:370:9 0/0:0.0,-77.69,-300.0:39:99:482:9 0/0:0.0,-113.35,-300.0:39:99:737:19 chrXII 593469 . AT CC 93 badReads;MQ;QD;alleleBias BRF=0.81;FR=0.0102;HP=1;HapScore=1;MGOF=17;MMLQ=32;MQ=17.83;NF=0;NR=16;PP=93;QD=9.15424217889;SC=CAACATTCACATATTTCTCAT;SbPval=1.0;Source=Platypus;TC=5562;TCF=2087;TCR=3475;TR=16;WE=593478;WS=593459 GT:GL:GOF:GQ:NR:NV 0/0:0.0,-31.19,-300.0:11:99:99:0 0/0:0.0,-14.03,-284.47:1:99:42:0 0/0:0.0,-7.1,-131.87:0:71:20:0 0/0:0.0,-6.2,-111.47:0:62:16:0 0/1:-15.04,0.0,-300.0:5:99:73:5 0/0:0.0,-5.6,-97.47:1:56:14:0 0/0:0.0,-8.31,-158.37:0:83:22:0 0/0:0.0,-9.51,-188.67:1:95:27:0 0/0:0.0,-12.52,-265.57:2:99:36:0 0/0:0.0,-40.74,-300.0:14:99:131:0 0/0:0.0,-50.15,-300.0:12:99:164:0 0/0:0.0,-42.9,-300.0:17:99:138:0 0/0:0.0,-37.52,-300.0:13:99:153:1 0/0:0.0,-75.94,-300.0:13:99:275:1 0/0:0.0,-45.01,-300.0:13:99:144:0 0/0:0.0,-65.81,-300.0:9:99:213:0 0/0:0.0,-27.44,-300.0:14:99:147:3 0/0:0.0,-46.81,-300.0:14:99:152:0 0/0:0.0,-35.03,-300.0:10:99:139:1 0/0:0.0,-181.87,-300.0:12:99:636:1 0/0:0.0,-51.05,-300.0:11:99:166:0 0/0:0.0,-72.03,-300.0:12:99:260:1 0/0:0.0,-45.01,-300.0:15:99:143:0 0/0:0.0,-67.31,-300.0:11:99:217:0 0/0:0.0,-45.03,-300.0:10:99:145:0 0/0:0.0,-28.48,-300.0:7:99:89:0 0/0:0.0,-67.22,-300.0:11:99:218:0 0/0:0.0,-71.74,-300.0:14:99:239:0 0/0:0.0,-11.62,-242.87:4:99:33:0 0/0:0.0,-9.21,-171.17:2:92:25:0 0/0:0.0,-11.92,-254.07:1:99:34:0 0/0:0.0,-13.73,-292.57:0:99:40:0 0/0:0.0,-9.21,-187.67:2:92:25:0 0/0:0.0,-8.91,-181.47:4:89:24:0 0/0:0.0,-8.31,-160.57:7:83:22:0 0/0:0.0,-12.52,-261.47:1:99:36:0 0/0:0.0,-13.73,-293.37:1:99:40:0 0/0:0.0,-14.33,-300.0:2:99:41:0 0/0:0.0,-18.54,-300.0:0:99:56:0 0/0:0.0,-18.84,-300.0:1:99:57:0 0/0:0.0,-11.32,-236.37:1:99:32:0 0/0:0.0,-15.23,-300.0:1:99:44:0 0/0:0.0,-15.23,-300.0:2:99:45:0 0/0:0.0,-14.03,-293.77:2:99:41:0 0/0:0.0,-7.71,-154.07:2:77:20:0 0/0:0.0,-36.15,-300.0:14:99:164:2 0/0:0.0,-45.34,-300.0:13:99:147:0 0/0:0.0,-60.04,-300.0:13:99:195:0 0/0:0.0,-93.87,-300.0:11:99:323:1