From 19f80784e6c73a526b6915fbf311464d22f5a94d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ya=C3=ABl=20Balbastre?= Date: Mon, 11 Mar 2024 15:19:03 +0000 Subject: [PATCH] [ENH] Add support for HiP-CT (#1686) * microscopy: add "hipCT" suffix * suffixes.yaml: add "hipCT" suffix * files/micr.yaml: add "hipCT" suffix * Update src/modality-specific-files/microscopy.md --------- Co-authored-by: Satrajit Ghosh Co-authored-by: Chris Markiewicz --- src/modality-specific-files/microscopy.md | 3 ++- src/schema/objects/suffixes.yaml | 5 +++++ src/schema/rules/files/raw/micr.yaml | 1 + 3 files changed, 8 insertions(+), 1 deletion(-) diff --git a/src/modality-specific-files/microscopy.md b/src/modality-specific-files/microscopy.md index 5d08f79377..7e3108c13f 100644 --- a/src/modality-specific-files/microscopy.md +++ b/src/modality-specific-files/microscopy.md @@ -26,7 +26,7 @@ and a guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> {{ MACROS___make_filename_template("raw", datatypes=["micr"], suffixes=["TEM", "SEM", "uCT", "BF", "DF", -"PC", "DIC", "FLUO", "CONF", "PLI", "CARS", "2PE", "MPE", "SR", "NLO", "OCT", "SPIM"], n_dupes_to_combine=4) }} +"PC", "DIC", "FLUO", "CONF", "PLI", "CARS", "2PE", "MPE", "SR", "NLO", "OCT", "SPIM", "hipCT"], n_dupes_to_combine=4) }} Microscopy data MUST be stored in the `micr` directory. @@ -89,6 +89,7 @@ and a guide for using macros can be found at "NLO", "OCT", "SPIM", + "hipCT", ] ) }} diff --git a/src/schema/objects/suffixes.yaml b/src/schema/objects/suffixes.yaml index 16e410c70d..13ee57ebc5 100644 --- a/src/schema/objects/suffixes.yaml +++ b/src/schema/objects/suffixes.yaml @@ -595,6 +595,11 @@ headshape: description: | The 3-D locations of points that describe the head shape and/or electrode locations can be digitized and stored in separate files. +hipCT: + value: hipCT + display_name: HiP-CT + description: | + Hierarchical Phase-Contrast Tomography imaging data ieeg: value: ieeg display_name: Intracranial Electroencephalography diff --git a/src/schema/rules/files/raw/micr.yaml b/src/schema/rules/files/raw/micr.yaml index aba1b48352..52d1adb74f 100644 --- a/src/schema/rules/files/raw/micr.yaml +++ b/src/schema/rules/files/raw/micr.yaml @@ -18,6 +18,7 @@ microscopy: - NLO - OCT - SPIM + - hipCT extensions: - .ome.tif - .ome.btf