Mon Oct 21 18:22:19 2019 /scratch/dawn/old_layout.txt 13217238 function calls (13210997 primitive calls) in 86.921 seconds Ordered by: internal time ncalls tottime percall cumtime percall filename:lineno(function) 26282 13.783 0.001 13.783 0.001 {built-in method posix.stat} 124266 7.506 0.000 36.251 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/bids/layout/validation.py:136(get_regular_expressions) 144979 6.852 0.000 9.222 0.000 {built-in method io.open} 144979 5.220 0.000 5.220 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/json/decoder.py:343(raw_decode) 755806 3.638 0.000 3.638 0.000 {method 'search' of 're.Pattern' objects} 662895 3.053 0.000 4.662 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/re.py:271(_compile) 233114 2.761 0.000 5.154 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/posixpath.py:75(join) 144979 2.384 0.000 3.805 0.000 {method 'read' of '_io.TextIOWrapper' objects} 1276021 2.375 0.000 2.375 0.000 {built-in method builtins.isinstance} 766309 1.996 0.000 1.996 0.000 {method 'replace' of 'str' objects} 662768 1.955 0.000 6.575 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/re.py:232(compile) 144979 1.818 0.000 8.798 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/json/decoder.py:332(decode) 2784 1.602 0.001 1.602 0.001 {built-in method posix.listdir} 1153716 1.571 0.000 1.571 0.000 {method 'append' of 'list' objects} 813329 1.455 0.000 1.455 0.000 {method 'join' of 'str' objects} 144979 1.398 0.000 15.726 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/json/__init__.py:274(load) 237904 1.283 0.000 3.333 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/grabbit/core.py:261(match_file) 46991 1.218 0.000 2.162 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/posixpath.py:331(normpath) 144979 1.181 0.000 10.523 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/json/__init__.py:299(loads) 20711 1.142 0.000 5.098 0.000 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/home/dawn/.pyenv/versions/3.7.1/lib/python3.7/posixpath.py:64(isabs) 20711 0.271 0.000 61.893 0.003 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/bids/layout/layout.py:296(_validate_file) 20711 0.267 0.000 5.126 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/bids/layout/validation.py:89(is_associated_data) 23494 0.265 0.000 0.445 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/genericpath.py:69(commonprefix) 20711 0.257 0.000 5.016 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/bids/layout/validation.py:109(is_subject_level) 144977 0.253 0.000 0.253 0.000 {built-in method builtins.any} 96823 0.246 0.000 0.246 0.000 {method 'split' of 'str' objects} 20711 0.242 0.000 4.660 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/bids/layout/validation.py:118(is_phenotypic) 75412 0.221 0.000 0.358 0.000 :1(__new__) 23494 0.215 0.000 12.528 0.001 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/genericpath.py:39(isdir) 14869 0.209 0.000 0.401 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/posixpath.py:104(split) 124327 0.207 0.000 0.207 0.000 {method 'keys' of 'dict' objects} 23494 0.196 0.000 0.287 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/grabbit/core.py:469(_check_inclusions) 14870 0.161 0.000 0.320 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/posixpath.py:154(dirname) 75412 0.158 0.000 0.158 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/grabbit/core.py:278(add_file) 75461 0.139 0.000 0.139 0.000 {method 'group' of 're.Match' objects} 75412 0.137 0.000 0.137 0.000 {built-in method __new__ of type object at 0x8a8ee0} 14869 0.130 0.000 0.678 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/grabbit/core.py:21(__init__) 20711 0.128 0.000 0.467 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/bids/layout/validation.py:113() 20711 0.127 0.000 0.469 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/bids/layout/validation.py:96() 20711 0.125 0.000 0.452 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/bids/layout/validation.py:122() 14869 0.110 0.000 1.195 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/bids/layout/layout.py:629(_make_file_object) 14869 0.107 0.000 0.228 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/posixpath.py:144(basename) 25596 0.099 0.000 0.099 0.000 {built-in method builtins.min} 44608 0.098 0.000 0.098 0.000 {method 'rfind' of 'str' objects} 14869 0.090 0.000 0.768 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/bids/layout/layout.py:51(__init__) 23494 0.090 0.000 0.376 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/grabbit/core.py:588() 23494 0.064 0.000 0.064 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/posixpath.py:468() 2784 0.059 0.000 0.510 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/grabbit/core.py:577() 23494 0.057 0.000 0.057 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/posixpath.py:469() 29739 0.053 0.000 0.053 0.000 {method 'rstrip' of 'str' objects} 23495 0.052 0.000 0.052 0.000 {method 'insert' of 'list' objects} 634/56 0.049 0.000 0.175 0.003 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/sre_parse.py:475(_parse) 23848 0.049 0.000 0.049 0.000 {built-in method builtins.max} 14869 0.047 0.000 0.068 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/grabbit/core.py:180(add_file) 23494 0.045 0.000 0.045 0.000 {built-in method _stat.S_ISDIR} 14879 0.045 0.000 0.068 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/grabbit/utils.py:34(listify) 861/56 0.034 0.000 0.092 0.002 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/sre_compile.py:71(_compile) 14869 0.033 0.000 0.033 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/grabbit/core.py:605() 10727 0.032 0.000 0.049 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/sre_parse.py:164(__getitem__) 2783 0.024 0.000 0.653 0.000 /home/dawn/.pyenv/versions/3.7.1/envs/pybidsold/lib/python3.7/site-packages/bids/layout/layout.py:285(_validate_dir) 14990 0.024 0.000 0.024 0.000 {method 'items' of 'dict' objects} 14869 0.023 0.000 0.023 0.000 {method 'values' of 'dict' objects} 2788 0.023 0.000 1.539 0.001 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/genericpath.py:16(exists) 5761 0.017 0.000 0.029 0.000 /home/dawn/.pyenv/versions/3.7.1/lib/python3.7/sre_parse.py:254(get) 6982 0.015 0.000 0.015 0.000 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