From b8f4ce7a7e86defb0acb4d0fc7ff872c09427e26 Mon Sep 17 00:00:00 2001 From: Mingxun Wang Date: Tue, 16 Mar 2021 12:10:58 -0700 Subject: [PATCH 1/6] adding factor --- annotated-projects/MSV000086206/MSV000086206.sdrf.tsv | 7 +++++++ 1 file changed, 7 insertions(+) create mode 100644 annotated-projects/MSV000086206/MSV000086206.sdrf.tsv diff --git a/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv b/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv new file mode 100644 index 00000000..4ff95939 --- /dev/null +++ b/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv @@ -0,0 +1,7 @@ +source name characteristics[organism part] characteristics[organism] characteristics[disease] characteristics[cell type] assay name comment[data file] comment[instrument] comment[fraction identifier] comment[label] comment[ionization] comment[injection volumn] factor value[mutant] +S_N1 not applicable Escherichia coli not applicable not applicable S_N1.mzML S_N1.mzML Q Exactive 88e5d20d-75cb-4233-9c50-7666e25ece5a AC=MS:1002038;NT=label free sample ESI Positive 5 WT +S_N2 not applicable Escherichia coli not applicable not applicable S_N2.mzML S_N2.mzML Q Exactive 88e5d20d-75cb-4233-9c50-7666e25ece5a AC=MS:1002038;NT=label free sample ESI Positive 5 WT +S_N3 not applicable Escherichia coli not applicable not applicable S_N3.mzML S_N3.mzML Q Exactive 88e5d20d-75cb-4233-9c50-7666e25ece5a AC=MS:1002038;NT=label free sample ESI Positive 5 WT +S_P1 not applicable Escherichia coli not applicable not applicable S_P1.mzML S_P1.mzML Q Exactive 88e5d20d-75cb-4233-9c50-7666e25ece5a AC=MS:1002038;NT=label free sample ESI Positive 5 KO +S_P2 not applicable Escherichia coli not applicable not applicable S_P2.mzML S_P2.mzML Q Exactive 88e5d20d-75cb-4233-9c50-7666e25ece5a AC=MS:1002038;NT=label free sample ESI Positive 5 KO +S_P3 not applicable Escherichia coli not applicable not applicable S_P3.mzML S_P3.mzML Q Exactive 88e5d20d-75cb-4233-9c50-7666e25ece5a AC=MS:1002038;NT=label free sample ESI Positive 5 KO From df346c1d5cad41dd34183a6aaf8f1b94e0857649 Mon Sep 17 00:00:00 2001 From: Mingxun Wang Date: Tue, 16 Mar 2021 12:14:56 -0700 Subject: [PATCH 2/6] adding technical replicates --- .../MSV000086206/MSV000086206.sdrf.tsv | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv b/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv index 4ff95939..d38d0060 100644 --- a/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv +++ b/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv @@ -1,7 +1,7 @@ -source name characteristics[organism part] characteristics[organism] characteristics[disease] characteristics[cell type] assay name comment[data file] comment[instrument] comment[fraction identifier] comment[label] comment[ionization] comment[injection volumn] factor value[mutant] -S_N1 not applicable Escherichia coli not applicable not applicable S_N1.mzML S_N1.mzML Q Exactive 88e5d20d-75cb-4233-9c50-7666e25ece5a AC=MS:1002038;NT=label free sample ESI Positive 5 WT -S_N2 not applicable Escherichia coli not applicable not applicable S_N2.mzML S_N2.mzML Q Exactive 88e5d20d-75cb-4233-9c50-7666e25ece5a AC=MS:1002038;NT=label free sample ESI Positive 5 WT -S_N3 not applicable Escherichia coli not applicable not applicable S_N3.mzML S_N3.mzML Q Exactive 88e5d20d-75cb-4233-9c50-7666e25ece5a AC=MS:1002038;NT=label free sample ESI Positive 5 WT -S_P1 not applicable Escherichia coli not applicable not applicable S_P1.mzML S_P1.mzML Q Exactive 88e5d20d-75cb-4233-9c50-7666e25ece5a AC=MS:1002038;NT=label free sample ESI Positive 5 KO -S_P2 not applicable Escherichia coli not applicable not applicable S_P2.mzML S_P2.mzML Q Exactive 88e5d20d-75cb-4233-9c50-7666e25ece5a AC=MS:1002038;NT=label free sample ESI Positive 5 KO -S_P3 not applicable Escherichia coli not applicable not applicable S_P3.mzML S_P3.mzML Q Exactive 88e5d20d-75cb-4233-9c50-7666e25ece5a AC=MS:1002038;NT=label free sample ESI Positive 5 KO +source name characteristics[organism part] characteristics[organism] characteristics[disease] characteristics[cell type] characteristics[biological replicate] characteristics[technical replicate] assay name comment[data file] comment[instrument] comment[fraction identifier] comment[label] comment[ionization] comment[injection volumn] factor value[mutant] +S_N1 not applicable Escherichia coli not applicable not applicable WT 1 S_N1.mzML S_N1.mzML Q Exactive 09794217-582f-45d7-badb-ab45b4cdcf5c AC=MS:1002038;NT=label free sample ESI Positive 5 WT +S_N2 not applicable Escherichia coli not applicable not applicable WT 2 S_N2.mzML S_N2.mzML Q Exactive 09794217-582f-45d7-badb-ab45b4cdcf5c AC=MS:1002038;NT=label free sample ESI Positive 5 WT +S_N3 not applicable Escherichia coli not applicable not applicable WT 3 S_N3.mzML S_N3.mzML Q Exactive 09794217-582f-45d7-badb-ab45b4cdcf5c AC=MS:1002038;NT=label free sample ESI Positive 5 WT +S_P1 not applicable Escherichia coli not applicable not applicable KO 4 S_P1.mzML S_P1.mzML Q Exactive 09794217-582f-45d7-badb-ab45b4cdcf5c AC=MS:1002038;NT=label free sample ESI Positive 5 KO +S_P2 not applicable Escherichia coli not applicable not applicable KO 5 S_P2.mzML S_P2.mzML Q Exactive 09794217-582f-45d7-badb-ab45b4cdcf5c AC=MS:1002038;NT=label free sample ESI Positive 5 KO +S_P3 not applicable Escherichia coli not applicable not applicable KO 6 S_P3.mzML S_P3.mzML Q Exactive 09794217-582f-45d7-badb-ab45b4cdcf5c AC=MS:1002038;NT=label free sample ESI Positive 5 KO From 4c2c90e2754d26c96daca2181c82e80c4e486564 Mon Sep 17 00:00:00 2001 From: Mingxun Wang Date: Wed, 24 Mar 2021 11:40:32 -0700 Subject: [PATCH 3/6] fixing technical --- .../MSV000086206/MSV000086206.sdrf.tsv | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv b/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv index d38d0060..1573cce7 100644 --- a/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv +++ b/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv @@ -1,7 +1,7 @@ -source name characteristics[organism part] characteristics[organism] characteristics[disease] characteristics[cell type] characteristics[biological replicate] characteristics[technical replicate] assay name comment[data file] comment[instrument] comment[fraction identifier] comment[label] comment[ionization] comment[injection volumn] factor value[mutant] -S_N1 not applicable Escherichia coli not applicable not applicable WT 1 S_N1.mzML S_N1.mzML Q Exactive 09794217-582f-45d7-badb-ab45b4cdcf5c AC=MS:1002038;NT=label free sample ESI Positive 5 WT -S_N2 not applicable Escherichia coli not applicable not applicable WT 2 S_N2.mzML S_N2.mzML Q Exactive 09794217-582f-45d7-badb-ab45b4cdcf5c AC=MS:1002038;NT=label free sample ESI Positive 5 WT -S_N3 not applicable Escherichia coli not applicable not applicable WT 3 S_N3.mzML S_N3.mzML Q Exactive 09794217-582f-45d7-badb-ab45b4cdcf5c AC=MS:1002038;NT=label free sample ESI Positive 5 WT -S_P1 not applicable Escherichia coli not applicable not applicable KO 4 S_P1.mzML S_P1.mzML Q Exactive 09794217-582f-45d7-badb-ab45b4cdcf5c AC=MS:1002038;NT=label free sample ESI Positive 5 KO -S_P2 not applicable Escherichia coli not applicable not applicable KO 5 S_P2.mzML S_P2.mzML Q Exactive 09794217-582f-45d7-badb-ab45b4cdcf5c AC=MS:1002038;NT=label free sample ESI Positive 5 KO -S_P3 not applicable Escherichia coli not applicable not applicable KO 6 S_P3.mzML S_P3.mzML Q Exactive 09794217-582f-45d7-badb-ab45b4cdcf5c AC=MS:1002038;NT=label free sample ESI Positive 5 KO +source name characteristics[organism part] characteristics[organism] characteristics[disease] characteristics[cell type] characteristics[biological replicate] assay name comment[data file] comment[instrument] comment[fraction identifier] comment[technical replicate] comment[label] comment[ionization] comment[injection volumn] factor value[mutant] +S_N1 not applicable Escherichia coli not applicable not applicable WT S_N1.mzML S_N1.mzML Q Exactive 69e67d5a-0d17-4fbe-8c0a-898fde19a489 1 AC=MS:1002038;NT=label free sample ESI Positive 5 WT +S_N2 not applicable Escherichia coli not applicable not applicable WT S_N2.mzML S_N2.mzML Q Exactive 69e67d5a-0d17-4fbe-8c0a-898fde19a489 2 AC=MS:1002038;NT=label free sample ESI Positive 5 WT +S_N3 not applicable Escherichia coli not applicable not applicable WT S_N3.mzML S_N3.mzML Q Exactive 69e67d5a-0d17-4fbe-8c0a-898fde19a489 3 AC=MS:1002038;NT=label free sample ESI Positive 5 WT +S_P1 not applicable Escherichia coli not applicable not applicable KO S_P1.mzML S_P1.mzML Q Exactive 69e67d5a-0d17-4fbe-8c0a-898fde19a489 4 AC=MS:1002038;NT=label free sample ESI Positive 5 KO +S_P2 not applicable Escherichia coli not applicable not applicable KO S_P2.mzML S_P2.mzML Q Exactive 69e67d5a-0d17-4fbe-8c0a-898fde19a489 5 AC=MS:1002038;NT=label free sample ESI Positive 5 KO +S_P3 not applicable Escherichia coli not applicable not applicable KO S_P3.mzML S_P3.mzML Q Exactive 69e67d5a-0d17-4fbe-8c0a-898fde19a489 6 AC=MS:1002038;NT=label free sample ESI Positive 5 KO From df67eb407d83e381e92961ca18930a3025fc9cae Mon Sep 17 00:00:00 2001 From: Mingxun Wang Date: Wed, 24 Mar 2021 12:22:41 -0700 Subject: [PATCH 4/6] adding cleavage --- .../MSV000086206/MSV000086206.sdrf.tsv | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv b/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv index 1573cce7..85da710f 100644 --- a/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv +++ b/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv @@ -1,7 +1,7 @@ -source name characteristics[organism part] characteristics[organism] characteristics[disease] characteristics[cell type] characteristics[biological replicate] assay name comment[data file] comment[instrument] comment[fraction identifier] comment[technical replicate] comment[label] comment[ionization] comment[injection volumn] factor value[mutant] -S_N1 not applicable Escherichia coli not applicable not applicable WT S_N1.mzML S_N1.mzML Q Exactive 69e67d5a-0d17-4fbe-8c0a-898fde19a489 1 AC=MS:1002038;NT=label free sample ESI Positive 5 WT -S_N2 not applicable Escherichia coli not applicable not applicable WT S_N2.mzML S_N2.mzML Q Exactive 69e67d5a-0d17-4fbe-8c0a-898fde19a489 2 AC=MS:1002038;NT=label free sample ESI Positive 5 WT -S_N3 not applicable Escherichia coli not applicable not applicable WT S_N3.mzML S_N3.mzML Q Exactive 69e67d5a-0d17-4fbe-8c0a-898fde19a489 3 AC=MS:1002038;NT=label free sample ESI Positive 5 WT -S_P1 not applicable Escherichia coli not applicable not applicable KO S_P1.mzML S_P1.mzML Q Exactive 69e67d5a-0d17-4fbe-8c0a-898fde19a489 4 AC=MS:1002038;NT=label free sample ESI Positive 5 KO -S_P2 not applicable Escherichia coli not applicable not applicable KO S_P2.mzML S_P2.mzML Q Exactive 69e67d5a-0d17-4fbe-8c0a-898fde19a489 5 AC=MS:1002038;NT=label free sample ESI Positive 5 KO -S_P3 not applicable Escherichia coli not applicable not applicable KO S_P3.mzML S_P3.mzML Q Exactive 69e67d5a-0d17-4fbe-8c0a-898fde19a489 6 AC=MS:1002038;NT=label free sample ESI Positive 5 KO +source name characteristics[organism part] characteristics[organism] characteristics[disease] characteristics[cell type] characteristics[biological replicate] assay name comment[data file] comment[instrument] comment[fraction identifier] comment[technical replicate] comment[label] comment[ionization] comment[injection volume] comment[cleavage agent details] factor value[mutant] +S_N1 not applicable Escherichia coli not applicable not applicable WT S_N1.mzML S_N1.mzML Q Exactive deacfaf6-d3d4-4250-94e5-c4cc245a5152 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable WT +S_N2 not applicable Escherichia coli not applicable not applicable WT S_N2.mzML S_N2.mzML Q Exactive deacfaf6-d3d4-4250-94e5-c4cc245a5152 2 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable WT +S_N3 not applicable Escherichia coli not applicable not applicable WT S_N3.mzML S_N3.mzML Q Exactive deacfaf6-d3d4-4250-94e5-c4cc245a5152 3 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable WT +S_P1 not applicable Escherichia coli not applicable not applicable KO S_P1.mzML S_P1.mzML Q Exactive deacfaf6-d3d4-4250-94e5-c4cc245a5152 4 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable KO +S_P2 not applicable Escherichia coli not applicable not applicable KO S_P2.mzML S_P2.mzML Q Exactive deacfaf6-d3d4-4250-94e5-c4cc245a5152 5 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable KO +S_P3 not applicable Escherichia coli not applicable not applicable KO S_P3.mzML S_P3.mzML Q Exactive deacfaf6-d3d4-4250-94e5-c4cc245a5152 6 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable KO From 376398c39114c3a29ed59f034dbd4e2a8021e2e1 Mon Sep 17 00:00:00 2001 From: Yasset Perez-Riverol Date: Tue, 10 Aug 2021 12:14:00 +0100 Subject: [PATCH 5/6] minor changes in PR --- .../MSV000086206/MSV000086206.sdrf.tsv | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv b/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv index 85da710f..ba55e752 100644 --- a/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv +++ b/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv @@ -1,7 +1,7 @@ -source name characteristics[organism part] characteristics[organism] characteristics[disease] characteristics[cell type] characteristics[biological replicate] assay name comment[data file] comment[instrument] comment[fraction identifier] comment[technical replicate] comment[label] comment[ionization] comment[injection volume] comment[cleavage agent details] factor value[mutant] -S_N1 not applicable Escherichia coli not applicable not applicable WT S_N1.mzML S_N1.mzML Q Exactive deacfaf6-d3d4-4250-94e5-c4cc245a5152 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable WT -S_N2 not applicable Escherichia coli not applicable not applicable WT S_N2.mzML S_N2.mzML Q Exactive deacfaf6-d3d4-4250-94e5-c4cc245a5152 2 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable WT -S_N3 not applicable Escherichia coli not applicable not applicable WT S_N3.mzML S_N3.mzML Q Exactive deacfaf6-d3d4-4250-94e5-c4cc245a5152 3 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable WT -S_P1 not applicable Escherichia coli not applicable not applicable KO S_P1.mzML S_P1.mzML Q Exactive deacfaf6-d3d4-4250-94e5-c4cc245a5152 4 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable KO -S_P2 not applicable Escherichia coli not applicable not applicable KO S_P2.mzML S_P2.mzML Q Exactive deacfaf6-d3d4-4250-94e5-c4cc245a5152 5 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable KO -S_P3 not applicable Escherichia coli not applicable not applicable KO S_P3.mzML S_P3.mzML Q Exactive deacfaf6-d3d4-4250-94e5-c4cc245a5152 6 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable KO +source name characteristics[organism] characteristics[organism part] characteristics[disease] characteristics[cell type] characteristics[biological replicate] characteristics[mutant] assay name comment[data file] comment[instrument] comment[fraction identifier] comment[technical replicate] comment[label] comment[ionization] comment[injection volume] comment[cleavage agent details] factor value[mutant] +Sample 1 Escherichia coli not applicable not applicable not applicable 1 WT msrun 1 S_N1.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable WT +Sample 2 Escherichia coli not applicable not applicable not applicable 2 WT msrun 2 S_N2.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable WT +Sample 3 Escherichia coli not applicable not applicable not applicable 3 WT msrun 3 S_N3.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable WT +Sample 4 Escherichia coli not applicable not applicable not applicable 1 KO msrun 4 S_P1.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable KO +Sample 5 Escherichia coli not applicable not applicable not applicable 2 KO msrun 5 S_P2.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable KO +Sample 6 Escherichia coli not applicable not applicable not applicable 3 KO msrun 6 S_P3.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable KO \ No newline at end of file From 72f05821c6c71f28a4d593d1d5662b0880bdf92a Mon Sep 17 00:00:00 2001 From: Yasset Perez-Riverol Date: Tue, 10 Aug 2021 14:03:58 +0100 Subject: [PATCH 6/6] minor changes --- .../MSV000086206/MSV000086206.sdrf.tsv | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv b/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv index ba55e752..4c43351a 100644 --- a/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv +++ b/annotated-projects/MSV000086206/MSV000086206.sdrf.tsv @@ -1,7 +1,7 @@ -source name characteristics[organism] characteristics[organism part] characteristics[disease] characteristics[cell type] characteristics[biological replicate] characteristics[mutant] assay name comment[data file] comment[instrument] comment[fraction identifier] comment[technical replicate] comment[label] comment[ionization] comment[injection volume] comment[cleavage agent details] factor value[mutant] -Sample 1 Escherichia coli not applicable not applicable not applicable 1 WT msrun 1 S_N1.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable WT -Sample 2 Escherichia coli not applicable not applicable not applicable 2 WT msrun 2 S_N2.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable WT -Sample 3 Escherichia coli not applicable not applicable not applicable 3 WT msrun 3 S_N3.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable WT -Sample 4 Escherichia coli not applicable not applicable not applicable 1 KO msrun 4 S_P1.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable KO -Sample 5 Escherichia coli not applicable not applicable not applicable 2 KO msrun 5 S_P2.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable KO -Sample 6 Escherichia coli not applicable not applicable not applicable 3 KO msrun 6 S_P3.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable KO \ No newline at end of file +source name characteristics[organism] characteristics[organism part] characteristics[disease] characteristics[cell type] characteristics[biological replicate] characteristics[mutant] technology type assay name comment[data file] comment[instrument] comment[fraction identifier] comment[technical replicate] comment[label] comment[ionization] comment[injection volume] comment[modification parameters] comment[cleavage agent details] factor value[mutant] +Sample 1 Escherichia coli not applicable not applicable not applicable 1 WT metabolomics profiling by mass spectrometry msrun 1 S_N1.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable not applicable WT +Sample 2 Escherichia coli not applicable not applicable not applicable 2 WT metabolomics profiling by mass spectrometry msrun 2 S_N2.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable not applicable WT +Sample 3 Escherichia coli not applicable not applicable not applicable 3 WT metabolomics profiling by mass spectrometry msrun 3 S_N3.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable not applicable WT +Sample 4 Escherichia coli not applicable not applicable not applicable 1 KO metabolomics profiling by mass spectrometry msrun 4 S_P1.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable not applicable KO +Sample 5 Escherichia coli not applicable not applicable not applicable 2 KO metabolomics profiling by mass spectrometry msrun 5 S_P2.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable not applicable KO +Sample 6 Escherichia coli not applicable not applicable not applicable 3 KO metabolomics profiling by mass spectrometry msrun 6 S_P3.mzML Q Exactive 1 1 AC=MS:1002038;NT=label free sample ESI Positive 5 not applicable not applicable KO \ No newline at end of file