diff --git a/bin/mzml_statistics.py b/bin/mzml_statistics.py index 672eb3cf..01d32be0 100755 --- a/bin/mzml_statistics.py +++ b/bin/mzml_statistics.py @@ -23,7 +23,7 @@ def parse_mzml(file_name: str, file_columns: list): exp = MSExperiment() MzMLFile().load(file_name, exp) for spectrum in exp: - id = spectrum.getNativeID() + id_ = spectrum.getNativeID() MSLevel = spectrum.getMSLevel() rt = spectrum.getRT() if spectrum.getRT() else None if MSLevel == 2: @@ -35,9 +35,9 @@ def parse_mzml(file_name: str, file_columns: list): base_peak_intensity = spectrum.getMetaValue("base peak intensity") else: base_peak_intensity = max(peaks_tuple[1]) if len(peaks_tuple[1]) > 0 else None - info_list = [id, 2, charge_state, peak_per_ms2, base_peak_intensity, rt, emz] + info_list = [id_, 2, charge_state, peak_per_ms2, base_peak_intensity, rt, emz] else: - info_list = [id, MSLevel, None, None, None, rt, None] + info_list = [id_, MSLevel, None, None, None, rt, None] info.append(info_list)