From b8da6503c9ccf40d413b6d1b4692f77a65cf0690 Mon Sep 17 00:00:00 2001 From: Chengxin Dai <37200167+daichengxin@users.noreply.github.com> Date: Tue, 14 Jan 2025 16:20:46 +0800 Subject: [PATCH] update ms2rescore --- modules/local/ms2rescore/main.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/local/ms2rescore/main.nf b/modules/local/ms2rescore/main.nf index 2c1614b4..287bc9a7 100644 --- a/modules/local/ms2rescore/main.nf +++ b/modules/local/ms2rescore/main.nf @@ -45,7 +45,7 @@ process MS2RESCORE { """ rescoring ms2rescore \\ --psm_file $idxml \\ - --spectrum_path . \\ + --spectrum_path $mzml \\ --ms2_tolerance $ms2_tolerence \\ --output_path ${idxml.baseName}_ms2rescore.idXML \\ --ms2pip_model_dir ${params.ms2pip_model_dir} \\