From a32bb12c6805c102b75166b71d57e293a6985672 Mon Sep 17 00:00:00 2001
From: ypriverol <ypriverol@gmail.com>
Date: Fri, 7 Jan 2022 09:59:18 +0000
Subject: [PATCH] improving conda

---
 .gitignore                         | 1 +
 modules/local/samplesheet_check.nf | 2 +-
 modules/local/sdrfparsing/main.nf  | 4 ++--
 3 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/.gitignore b/.gitignore
index b468c1ee..eef70311 100644
--- a/.gitignore
+++ b/.gitignore
@@ -8,3 +8,4 @@ testing*
 *.pyc
 .idea/
 .idea/*
+*.log
diff --git a/modules/local/samplesheet_check.nf b/modules/local/samplesheet_check.nf
index 709a474c..d4d41bba 100644
--- a/modules/local/samplesheet_check.nf
+++ b/modules/local/samplesheet_check.nf
@@ -12,7 +12,7 @@ process SAMPLESHEET_CHECK {
         mode: params.publish_dir_mode,
         saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:'pipeline_info', meta:[:], publish_by_meta:[]) }
 
-    conda (params.enable_conda ? "conda-forge::pandas_schema bioconda::sdrf-pipelines=0.0.18" : null)
+    conda (params.enable_conda ? "conda-forge::pandas_schema bioconda::sdrf-pipelines=0.0.19" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/sdrf-pipelines:0.0.18--pyhdfd78af_0"
     } else {
diff --git a/modules/local/sdrfparsing/main.nf b/modules/local/sdrfparsing/main.nf
index a2e9a6f0..514da03d 100644
--- a/modules/local/sdrfparsing/main.nf
+++ b/modules/local/sdrfparsing/main.nf
@@ -10,7 +10,7 @@ process SDRFPARSING {
         mode: params.publish_dir_mode,
         saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:[:], publish_by_meta:[]) }
 
-    conda (params.enable_conda ? "conda-forge::pandas_schema bioconda::sdrf-pipelines=0.0.18" : null)
+    conda (params.enable_conda ? "conda-forge::pandas_schema bioconda::sdrf-pipelines=0.0.19" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/sdrf-pipelines:0.0.18--pyhdfd78af_0"
     } else {
@@ -36,6 +36,6 @@ process SDRFPARSING {
 
     parse_sdrf $options.args -s ${sdrf} > sdrf_parsing.log
 
-    echo "0.0.18" > sdrf-pipelines.version.txt
+    echo "0.0.19" > sdrf-pipelines.version.txt
     """
 }