From 90de3fe2ecdf48029545cbac84bbd973af64a1f3 Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Sun, 2 Nov 2014 22:30:17 -0500 Subject: [PATCH] add supplementaryAlignment to AlignmentRecordField --- .../org/bdgenomics/adam/projections/AlignmentRecordField.scala | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/adam-core/src/main/scala/org/bdgenomics/adam/projections/AlignmentRecordField.scala b/adam-core/src/main/scala/org/bdgenomics/adam/projections/AlignmentRecordField.scala index 315d809890..7634be297f 100644 --- a/adam-core/src/main/scala/org/bdgenomics/adam/projections/AlignmentRecordField.scala +++ b/adam-core/src/main/scala/org/bdgenomics/adam/projections/AlignmentRecordField.scala @@ -28,5 +28,5 @@ import org.bdgenomics.formats.avro.AlignmentRecord */ object AlignmentRecordField extends FieldEnumeration(AlignmentRecord.SCHEMA$) { - val contig, start, end, mapq, readName, sequence, mateAlignmentStart, cigar, qual, recordGroupId, recordGroupName, readPaired, properPair, readMapped, mateMapped, readNegativeStrand, mateNegativeStrand, firstOfPair, secondOfPair, primaryAlignment, failedVendorQualityChecks, duplicateRead, mismatchingPositions, attributes, recordGroupSequencingCenter, recordGroupDescription, recordGroupRunDateEpoch, recordGroupFlowOrder, recordGroupKeySequence, recordGroupLibrary, recordGroupPredictedMedianInsertSize, recordGroupPlatform, recordGroupPlatformUnit, recordGroupSample, mateContig, origQual = SchemaValue + val contig, start, end, mapq, readName, sequence, mateAlignmentStart, cigar, qual, recordGroupId, recordGroupName, readPaired, properPair, readMapped, mateMapped, readNegativeStrand, mateNegativeStrand, firstOfPair, secondOfPair, primaryAlignment, failedVendorQualityChecks, duplicateRead, mismatchingPositions, attributes, recordGroupSequencingCenter, recordGroupDescription, recordGroupRunDateEpoch, recordGroupFlowOrder, recordGroupKeySequence, recordGroupLibrary, recordGroupPredictedMedianInsertSize, recordGroupPlatform, recordGroupPlatformUnit, recordGroupSample, mateContig, origQual, supplmentaryAlignment = SchemaValue }