diff --git a/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala b/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala
index cbbda02..e3a6dc4 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala
@@ -47,8 +47,8 @@ class BedtoolsIntersectArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the Bedtools executable. Defaults to bedtools.")
   var executable: String = "bedtools"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bedtools:2.30.0--h468198e_3.")
-  var image: String = "quay.io/biocontainers/bedtools:2.30.0--h468198e_3"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bedtools:2.31.1--hf5e1c6e_0.")
+  var image: String = "quay.io/biocontainers/bedtools:2.31.1--hf5e1c6e_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala b/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala
index 492faa7..c3afb60 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala
@@ -37,8 +37,8 @@ class BlastnArgs extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the blastn executable. Defaults to blastn.")
   var executable: String = "blastn"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/blast:2.13.0--hf3cf87c_0.")
-  var image: String = "quay.io/biocontainers/blast:2.13.0--hf3cf87c_0"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/blast:2.15.0--pl5321h6f7f691_0.")
+  var image: String = "quay.io/biocontainers/blast:2.15.0--pl5321h6f7f691_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala b/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala
index 89aad75..71e24c9 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala
@@ -36,8 +36,8 @@ class Bowtie2Args extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the Bowtie 2 executable. Defaults to bowtie2.")
   var executable: String = "bowtie2"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bowtie2:2.5.1--py310h8d7afc0_0.")
-  var image: String = "quay.io/biocontainers/bowtie2:2.5.1--py310h8d7afc0_0"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bowtie2:2.5.2--py39h6fed5c7_0.")
+  var image: String = "quay.io/biocontainers/bowtie2:2.5.2--py39h6fed5c7_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/Minimap2.scala b/core/src/main/scala/org/bdgenomics/cannoli/Minimap2.scala
index 4f82226..3c04a2c 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/Minimap2.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/Minimap2.scala
@@ -36,8 +36,8 @@ class Minimap2Args extends ReadGroupArgs {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the Minimap2 executable. Defaults to minimap2.")
   var executable: String = "minimap2"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/minimap2:2.24--h7132678_1.")
-  var image: String = "quay.io/biocontainers/minimap2:2.24--h7132678_1"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/minimap2:2.25--h7132678_0.")
+  var image: String = "quay.io/biocontainers/minimap2:2.25--h7132678_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false
diff --git a/core/src/main/scala/org/bdgenomics/cannoli/SingleEndBowtie2.scala b/core/src/main/scala/org/bdgenomics/cannoli/SingleEndBowtie2.scala
index 184ed0c..15b6b20 100644
--- a/core/src/main/scala/org/bdgenomics/cannoli/SingleEndBowtie2.scala
+++ b/core/src/main/scala/org/bdgenomics/cannoli/SingleEndBowtie2.scala
@@ -39,8 +39,8 @@ class SingleEndBowtie2Args extends Args4jBase {
   @Args4jOption(required = false, name = "-executable", usage = "Path to the Bowtie 2 executable. Defaults to bowtie2.")
   var executable: String = "bowtie2"
 
-  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bowtie2:2.5.0--py310h8d7afc0_0.")
-  var image: String = "quay.io/biocontainers/bowtie2:2.5.0--py310h8d7afc0_0"
+  @Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bowtie2:2.5.2--py39h6fed5c7_0.")
+  var image: String = "quay.io/biocontainers/bowtie2:2.5.2--py39h6fed5c7_0"
 
   @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
   var sudo: Boolean = false