diff --git a/snappy_pipeline/workflows/common/melt.py b/snappy_pipeline/workflows/common/melt.py index fc688f46e..e70a9ee70 100644 --- a/snappy_pipeline/workflows/common/melt.py +++ b/snappy_pipeline/workflows/common/melt.py @@ -43,7 +43,7 @@ class MeltStepPart( _resource_usage = ResourceUsage( threads=1, time="1-00:00:00", - memory="6G", + memory="12G", ) resource_usage_dict = { "preprocess": _resource_usage, diff --git a/snappy_wrappers/wrappers/melt/genotype/wrapper.py b/snappy_wrappers/wrappers/melt/genotype/wrapper.py index 1b2a70434..f4ec278e5 100644 --- a/snappy_wrappers/wrappers/melt/genotype/wrapper.py +++ b/snappy_wrappers/wrappers/melt/genotype/wrapper.py @@ -16,7 +16,7 @@ ME_REFS={melt_config[me_refs_path]} ME_INFIX={melt_config[me_refs_infix]} -java -Xmx6G -jar $JAR \ +java -Xmx8G -jar $JAR \ Genotype \ -h {snakemake.config[static_data_config][reference][path]} \ -bamfile {snakemake.input.bam} \ diff --git a/snappy_wrappers/wrappers/melt/group_analysis/wrapper.py b/snappy_wrappers/wrappers/melt/group_analysis/wrapper.py index 98f5384d3..8c0a3b9b8 100644 --- a/snappy_wrappers/wrappers/melt/group_analysis/wrapper.py +++ b/snappy_wrappers/wrappers/melt/group_analysis/wrapper.py @@ -16,7 +16,7 @@ ME_REFS={melt_config[me_refs_path]} ME_INFIX={melt_config[me_refs_infix]} -java -jar -Xmx6G -jar $JAR \ +java -jar -Xmx8G -jar $JAR \ GroupAnalysis \ -h {snakemake.config[static_data_config][reference][path]} \ -t $ME_REFS/$ME_INFIX/{snakemake.wildcards.me_type}_MELT.zip \ diff --git a/snappy_wrappers/wrappers/melt/indiv_analysis/wrapper.py b/snappy_wrappers/wrappers/melt/indiv_analysis/wrapper.py index 34d41106e..7d2efcd3b 100644 --- a/snappy_wrappers/wrappers/melt/indiv_analysis/wrapper.py +++ b/snappy_wrappers/wrappers/melt/indiv_analysis/wrapper.py @@ -17,7 +17,7 @@ ME_REFS={melt_config[me_refs_path]} ME_INFIX={melt_config[me_refs_infix]} -java -Xmx6G -jar $JAR \ +java -Xmx8G -jar $JAR \ IndivAnalysis \ -b hs37d5/NC_007605 \ {melt_arg_exome} \ diff --git a/snappy_wrappers/wrappers/melt/make_vcf/wrapper.py b/snappy_wrappers/wrappers/melt/make_vcf/wrapper.py index 1c0437827..5386a559b 100644 --- a/snappy_wrappers/wrappers/melt/make_vcf/wrapper.py +++ b/snappy_wrappers/wrappers/melt/make_vcf/wrapper.py @@ -22,7 +22,7 @@ > {snakemake.output.list_txt} # TODO: allowing 100% no-call wise? -java -Xmx6G -jar $JAR \ +java -Xmx8G -jar $JAR \ MakeVCF \ -genotypingdir $genotype_dir \ -h {snakemake.config[static_data_config][reference][path]} \ diff --git a/snappy_wrappers/wrappers/melt/preprocess/wrapper.py b/snappy_wrappers/wrappers/melt/preprocess/wrapper.py index 076a52615..02de9d410 100644 --- a/snappy_wrappers/wrappers/melt/preprocess/wrapper.py +++ b/snappy_wrappers/wrappers/melt/preprocess/wrapper.py @@ -17,7 +17,7 @@ JAR={melt_config[jar_file]} -java -Xmx4G -jar $JAR \ +java -Xmx8G -jar $JAR \ Preprocess \ -bamfile {snakemake.output.orig_bam} \ -h {snakemake.config[static_data_config][reference][path]}