chore: Replace mutect2_par wrapper with snakemake scattergather #538
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ericblanc20
reviewed
Aug 27, 2024
| """Splits a given collection of contigs based on their length into `n_chunks` equal sized chunks""" | ||
| contigs, lengths = zip(*contig_lengths.items()) | ||
| cumulative_lengths = list(accumulate(lengths, initial=0)) | ||
| chunk_size = cumulative_lengths[-1] // n_chunks |
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Is that correct? I have the feeling that the code above would return two chunks of size of 4 each if the cumulative length is 9.
I would suggest:
# assert cumulative_lengths[-1] > 0, "Total sequence length is 0"
chunk_size = 1 + ((cumulative_lengths[-1] - 1) // n_chunks)
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