Releases · biocommons/anyvar

What's Changed

Fixes so I can build and run the anyvar docker container. by @naomifox-invitae in #6
Fix #8- SeqRepoDataProxy by @jarbesfeld in #9
added postgres data store, fix #10 by @jarbesfeld in #11
docs: update readme for postgres setup by @korikuzma in #14
feat #13: get statistics about variation content by @jarbesfeld in #16
feat: add endpoint for querying alleles in one genomic region by @korikuzma in #15
fix: use VRS-Python for translate call by @jsstevenson in #18
test: basic route coverage by @jsstevenson in #31
test: add coverage reporting by @jsstevenson in #32
feat: use Variation Normalizer for translation by @jsstevenson in #33
style: add new linting checks by @jsstevenson in #34
feat: use FastAPI for endpoint service by @jsstevenson in #43
fix: don't create redundant DB entries by @jsstevenson in #46
feat: add vcf endpoint by @jsstevenson in #48
Enable batched insert by @jsstevenson in #50
fix: don't expose stack in error response by @jsstevenson in #57
merge hackathon work by @jsstevenson in #60
feat!: use vrs 2-alpha1 by @korikuzma in #61
chore: remove unused code by @korikuzma in #63
Added 'dependencies' and 'optional-dependencies' to dynamic list by @ehclark in #69
Snowflake database storage integration by @ehclark in #70
Add parameter to the /vcf endpoint to control whether VRS IDs are generated for REF alleles by @ehclark in #74
Cleanup storage integration and write pending batches on shutdown by @ehclark in #76
Improve performance of AnyVar.put_object() by eliminating unnecessary digest computation by @ehclark in #73
Add parameter to /vcf endpoint to force async writes to complete before returning response by @ehclark in #75
Add support for GRCh37 to /vcf endpoint by @ehclark in #77
Apply formatting and specify version by @theferrit32 in #82
Update README-pg.md by @larrybabb in #79
Fix postgres connection issue and typo in postgres readme by @theferrit32 in #83
Update VCF annotator code to be compatible with superclass in vrs-python by @ehclark in #86
Snowflake storage integration updates for collation and private key auth by @ehclark in #90
Update unit tests to match the new VRS 2.0 digests by @ehclark in #92
Integrate SQLAlchemy for db conn management and introduce new SqlStorage abstraction by @ehclark in #93
docs: update readme + postgres_init.sql commands by @korikuzma in #96
fix: update ga4gh.vrs version + add back VRS type anno in models by @korikuzma in #95
feat!: update configs and core template stuff by @jsstevenson in #97
Fix problems introduced by project configuration changes and dependency upgrades by @ehclark in #101
Convert ANYVAR_SQL_STORE_FLUSH_ON_BATCHCTX_EXIT env value to boolean explicitly by @ehclark in #105
Add feature to allow logging configuration to be specified at runtime by @ehclark in #106
VCF annotation via asynchronous request-response pattern by @ehclark in #108
Suppress Pydantic warnings by default by @ehclark in #110
build: pin VRS-Python 2.0a12 by @jsstevenson in #114