sources

## 2020-02-01: NCBI moved "old" refseq to genomes/archive/old_refseq/
## see ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/00__README_archiving_notice.txt

gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz
gene/DATA/gene2accession.gz
gene/DATA/gene2refseq.gz
gene/DATA/gene_info.gz
gene/GeneRIF/generifs_basic.gz
gene/GeneRIF/interactions.gz
gene/README

genomes/all/GCF/000/001/405/*/*assembly_report.txt

# fasta assembly with latest patches of build 38:
genomes/refseq/vertebrate_mammalian/Homo_sapiens/all_assembly_versions/GCF_000001405.*_GRCh38.p14/GCF_000001405.*_GRCh38.p14_genomic.fna.gz

# T2T assembly
genomes/refseq/vertebrate_mammalian/Homo_sapiens/all_assembly_versions/GCF_009914755.*_T2T-CHM13v2.0/GCF_009914755.*_T2T-CHM13v2.0_genomic.fna.gz


# fasta assembly of build 37, which was archived in Feb 2020
# see: https://ftp.ncbi.nlm.nih.gov/genomes/archive/old_refseq/Homo_sapiens/00__README_archiving_notice.txt
genomes/archive/old_refseq/Homo_sapiens/ARCHIVE/BUILD.37.3/CHR_*/hs*.fa.gz
genomes/archive/old_refseq/Homo_sapiens/ARCHIVE/BUILD.37.3/protein/protein.fa.gz

refseq/H_sapiens/README
refseq/H_sapiens/RefSeqGene/*.gz
refseq/H_sapiens/RefSeqGene/LRG_RefSeqGene
refseq/H_sapiens/RefSeqGene/gene_RefSeqGene

# gff3 files in here:
refseq/H_sapiens/alignments

refseq/H_sapiens/mRNA_Prot


#pub/clinvar/xml/
#pub/clinvar/xml/_README
#pub/clinvar/vcf_GRCh37/clinvar*
#pub/clinvar/vcf_GRCh38/clinvar*

## 2020-02-01: NCBI moved "old" refseq to genomes/archive/old_refseq/
## see ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/00__README_archiving_notice.txt
# genomes/H_sapiens/CHR_*/hs*.fa.gz
# genomes/H_sapiens/protein/protein.fa.gz

#snp/organisms/human_9606/VCF/All*.vcf*
#snp/organisms/human_9606/XML/*xml.gz
#snp/organisms/human_9606_b147_GRCh37p13/VCF/All*.vcf*
#snp/organisms/human_9606_b147_GRCh37p13/XML/*xml.gz
#snp/organisms/human_9606_b147_GRCh38p2/VCF/All*.vcf*
#snp/organisms/human_9606_b147_GRCh38p2/XML/*xml.gz