diff --git a/recipes/vt/2015.11.10/build.sh b/recipes/vt/2015.11.10/build.sh new file mode 100644 index 0000000000000..22bbe965baf75 --- /dev/null +++ b/recipes/vt/2015.11.10/build.sh @@ -0,0 +1,14 @@ +#!/bin/bash + +export INCLUDE_PATH="${PREFIX}/include" +export LIBRARY_PATH="${PREFIX}/lib" +export LD_LIBRARY_PATH="${PREFIX}/lib" + +export CFLAGS="-I$PREFIX/include" +export CPATH=${PREFIX}/include +export LDFLAGS="-L${PREFIX}/lib" +export CPPFLAGS="-I${PREFIX}/include" + +make +mkdir -p $PREFIX/bin +cp vt $PREFIX/bin diff --git a/recipes/vt/2015.11.10/meta.yaml b/recipes/vt/2015.11.10/meta.yaml new file mode 100644 index 0000000000000..c772c054ac50f --- /dev/null +++ b/recipes/vt/2015.11.10/meta.yaml @@ -0,0 +1,28 @@ +package: + name: vt + version: '2015.11.10' + +source: + url: https://github.com/atks/vt/archive/15f90de5.tar.gz + sha256: a135be9a9b3094e21e92e915633e114a794d197172093fcab4c0999b97fa7e87 + +build: + number: 3 + skip: True # [osx] + +requirements: + build: + - {{ compiler('cxx') }} + host: + - zlib + run: + - zlib + +test: + commands: + - vt + +about: + home: https://github.com/atks/vt + license: MIT + summary: A tool set for short variant discovery in genetic sequence data diff --git a/recipes/vt/build.sh b/recipes/vt/build.sh index 22bbe965baf75..2c9ec0f2ecd7d 100644 --- a/recipes/vt/build.sh +++ b/recipes/vt/build.sh @@ -9,6 +9,7 @@ export CPATH=${PREFIX}/include export LDFLAGS="-L${PREFIX}/lib" export CPPFLAGS="-I${PREFIX}/include" -make +make -j${CPU_COUNT} +make test mkdir -p $PREFIX/bin cp vt $PREFIX/bin diff --git a/recipes/vt/meta.yaml b/recipes/vt/meta.yaml index c772c054ac50f..c0b75f1e2d1b1 100644 --- a/recipes/vt/meta.yaml +++ b/recipes/vt/meta.yaml @@ -1,28 +1,39 @@ +{% set name = "vt" %} +{% set version = "0.57721" %} + package: - name: vt - version: '2015.11.10' + name: {{ name }} + version: {{ version }} source: - url: https://github.com/atks/vt/archive/15f90de5.tar.gz - sha256: a135be9a9b3094e21e92e915633e114a794d197172093fcab4c0999b97fa7e87 + url: https://github.com/atks/{{ name }}/archive/{{ version }}.tar.gz + sha256: 8f06d464ec5458539cfa30f81a034f47fe7f801146fe8ca80c14a3816b704e17 build: - number: 3 + number: 0 skip: True # [osx] requirements: build: - {{ compiler('cxx') }} host: + - bzip2 + - curl + - xz - zlib + - libdeflate run: + - bzip2 + - curl + - xz - zlib + - libdeflate test: commands: - vt about: - home: https://github.com/atks/vt + home: https://genome.sph.umich.edu/wiki/Vt license: MIT - summary: A tool set for short variant discovery in genetic sequence data + summary: A tool set for manipulating and generating VCF files