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(cached) awk - checking for x86_64-apple-darwin13.4.0-gcc... x86_64-apple-darwin13.4.0-clang - checking whether the C compiler works... yes - checking for C compiler default output file name... a.out - checking for suffix of executables... - checking whether we are cross compiling... no - checking for suffix of object files... o - checking whether we are using the GNU C compiler... yes - checking whether x86_64-apple-darwin13.4.0-clang accepts -g... yes - checking for x86_64-apple-darwin13.4.0-clang option to accept ISO C89... none needed - checking for style of include used by make... GNU - checking dependency style of x86_64-apple-darwin13.4.0-clang... gcc3 - checking for math.h... yes - checking for log in -lm... yes - checking for zlib.h... yes - checking for inflate in -lz... yes - checking for bzlib.h... yes - checking for BZ2_bzBuffToBuffCompress in -lbz2... yes - checking for lzma.h... yes - checking for lzma_easy_buffer_encode in -llzma... yes - checking for curl_easy_pause in -lcurl... yes - checking for HMAC in -lcrypto... yes - checking location of HTSlib installation... none found - checking for htslib/sam.h... yes - checking for sam_hdr_init in -lhts... yes - checking how to run the C preprocessor... x86_64-apple-darwin13.4.0-clang -E - checking for grep that handles long lines and -e... /usr/bin/grep - checking for egrep... /usr/bin/grep -E - checking for ANSI C header files... yes - checking for sys/types.h... yes - checking for sys/stat.h... yes - checking for stdlib.h... yes - checking for string.h... yes - checking for memory.h... yes - checking for strings.h... yes - checking for inttypes.h... yes - checking for stdint.h... yes - checking for unistd.h... yes - checking for stdlib.h... (cached) yes - checking for string.h... (cached) yes - checking for unistd.h... (cached) yes - checking for inline... inline - checking for int32_t... yes - checking for int8_t... yes - checking for size_t... yes - checking for ssize_t... yes - checking for uint32_t... yes - checking for uint8_t... yes - checking for stdlib.h... (cached) yes - checking for GNU libc compatible malloc... (cached) yes - checking for stdlib.h... (cached) yes - checking for GNU libc compatible realloc... (cached) yes - checking for memset... yes - checking for mkdir... yes - checking for pow... yes - checking for strdup... yes - checking that generated files are newer than configure... done - configure: creating ./config.status - config.status: creating Makefile - config.status: creating conf.h - config.status: executing depfiles commands - make all-am - make[1]: Entering directory '$SRC_DIR' - x86_64-apple-darwin13.4.0-clang -DHAVE_CONFIG_H -I. -Isrc -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -g -Wall -O2 -Wno-unused-function -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/cellsnp-lite-1.2.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -MT src/cellsnp_lite-cellsnp.o -MD -MP -MF src/.deps/cellsnp_lite-cellsnp.Tpo -c -o src/cellsnp_lite-cellsnp.o test -f 'src/cellsnp.c' || echo './'src/cellsnp.c - mv -f src/.deps/cellsnp_lite-cellsnp.Tpo src/.deps/cellsnp_lite-cellsnp.Po - x86_64-apple-darwin13.4.0-clang -DHAVE_CONFIG_H -I. -Isrc -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -g -Wall -O2 -Wno-unused-function -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/cellsnp-lite-1.2.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -MT src/cellsnp_lite-csp.o -MD -MP -MF src/.deps/cellsnp_lite-csp.Tpo -c -o src/cellsnp_lite-csp.o test -f 'src/csp.c' || echo './'src/csp.c - mv -f src/.deps/cellsnp_lite-csp.Tpo src/.deps/cellsnp_lite-csp.Po - x86_64-apple-darwin13.4.0-clang -DHAVE_CONFIG_H -I. -Isrc -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -g -Wall -O2 -Wno-unused-function -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/cellsnp-lite-1.2.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -MT src/cellsnp_lite-csp_fetch.o -MD -MP -MF src/.deps/cellsnp_lite-csp_fetch.Tpo -c -o src/cellsnp_lite-csp_fetch.o test -f 'src/csp_fetch.c' || echo './'src/csp_fetch.c - mv -f src/.deps/cellsnp_lite-csp_fetch.Tpo src/.deps/cellsnp_lite-csp_fetch.Po - x86_64-apple-darwin13.4.0-clang -DHAVE_CONFIG_H -I. -Isrc -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -g -Wall -O2 -Wno-unused-function -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/cellsnp-lite-1.2.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -MT src/cellsnp_lite-csp_pileup.o -MD -MP -MF src/.deps/cellsnp_lite-csp_pileup.Tpo -c -o src/cellsnp_lite-csp_pileup.o test -f 'src/csp_pileup.c' || echo './'src/csp_pileup.c - mv -f src/.deps/cellsnp_lite-csp_pileup.Tpo src/.deps/cellsnp_lite-csp_pileup.Po - x86_64-apple-darwin13.4.0-clang -DHAVE_CONFIG_H -I. -Isrc -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -g -Wall -O2 -Wno-unused-function -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/cellsnp-lite-1.2.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -MT src/cellsnp_lite-jfile.o -MD -MP -MF src/.deps/cellsnp_lite-jfile.Tpo -c -o src/cellsnp_lite-jfile.o test -f 'src/jfile.c' || echo './'src/jfile.c - mv -f src/.deps/cellsnp_lite-jfile.Tpo src/.deps/cellsnp_lite-jfile.Po - x86_64-apple-darwin13.4.0-clang -DHAVE_CONFIG_H -I. -Isrc -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -g -Wall -O2 -Wno-unused-function -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/cellsnp-lite-1.2.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -MT src/cellsnp_lite-jsam.o -MD -MP -MF src/.deps/cellsnp_lite-jsam.Tpo -c -o src/cellsnp_lite-jsam.o test -f 'src/jsam.c' || echo './'src/jsam.c - mv -f src/.deps/cellsnp_lite-jsam.Tpo src/.deps/cellsnp_lite-jsam.Po - x86_64-apple-darwin13.4.0-clang -DHAVE_CONFIG_H -I. -Isrc -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -g -Wall -O2 -Wno-unused-function -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/cellsnp-lite-1.2.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -MT src/cellsnp_lite-jstring.o -MD -MP -MF src/.deps/cellsnp_lite-jstring.Tpo -c -o src/cellsnp_lite-jstring.o test -f 'src/jstring.c' || echo './'src/jstring.c - mv -f src/.deps/cellsnp_lite-jstring.Tpo src/.deps/cellsnp_lite-jstring.Po - x86_64-apple-darwin13.4.0-clang -DHAVE_CONFIG_H -I. -Isrc -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -g -Wall -O2 -Wno-unused-function -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/cellsnp-lite-1.2.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -MT src/cellsnp_lite-mplp.o -MD -MP -MF src/.deps/cellsnp_lite-mplp.Tpo -c -o src/cellsnp_lite-mplp.o test -f 'src/mplp.c' || echo './'src/mplp.c - mv -f src/.deps/cellsnp_lite-mplp.Tpo src/.deps/cellsnp_lite-mplp.Po - x86_64-apple-darwin13.4.0-clang -DHAVE_CONFIG_H -I. -Isrc -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -g -Wall -O2 -Wno-unused-function -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/cellsnp-lite-1.2.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -MT src/cellsnp_lite-snp.o -MD -MP -MF src/.deps/cellsnp_lite-snp.Tpo -c -o src/cellsnp_lite-snp.o test -f 'src/snp.c' || echo './'src/snp.c - mv -f src/.deps/cellsnp_lite-snp.Tpo src/.deps/cellsnp_lite-snp.Po - x86_64-apple-darwin13.4.0-clang -DHAVE_CONFIG_H -I. -Isrc -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -g -Wall -O2 -Wno-unused-function -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/cellsnp-lite-1.2.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -MT src/cellsnp_lite-thpool.o -MD -MP -MF src/.deps/cellsnp_lite-thpool.Tpo -c -o src/cellsnp_lite-thpool.o test -f 'src/thpool.c' || echo './'src/thpool.c - make[1]: Leaving directory '$SRC_DIR' -# Last 100 lines of the build log. diff --git a/recipes/cellsnp-lite/meta.yaml b/recipes/cellsnp-lite/meta.yaml index 5a2d55ecac7cd..f44ac346eecc8 100644 --- a/recipes/cellsnp-lite/meta.yaml +++ b/recipes/cellsnp-lite/meta.yaml @@ -1,8 +1,9 @@ +{% set name = "cellsnp-lite" %} {% set version = "1.2.3" %} {% set sha256 = "baf84ee8fc80e5a11d31e266ed6087e7dcba65be6b8583b025c628a9ff9d9dd7" %} package: - name: cellsnp-lite + name: {{ name }} version: {{ version }} source: @@ -10,27 +11,42 @@ source: sha256: {{ sha256 }} build: - number: 3 - #skip: True # [osx] + number: 4 + run_exports: + - {{ pin_subpackage('cellsnp-lite', max_pin="x") }} requirements: build: - make - {{ compiler('c') }} + - autoconf + - automake + - libtool host: - htslib + - libcurl + - bzip2 - zlib run: - htslib - - zlib test: commands: - cellsnp-lite 2>&1 | grep -i 'options' about: - home: https://github.com/single-cell-genetics/cellsnp-lite - license: Apache-2.0 + home: "https://github.com/single-cell-genetics/cellsnp-lite" + license: "Apache-2.0" + license_family: APACHE license_file: LICENSE - summary: Efficient genotyping bi-allelic SNPs on single cells + summary: "Efficient genotyping bi-allelic SNPs on single cells." + dev_url: "https://github.com/single-cell-genetics/cellsnp-lite" + doc_url: "https://cellsnp-lite.readthedocs.io/en/latest" +extra: + identifiers: + - doi:10.1093/bioinformatics/btab358 + - biotools:cellsnp-lite + additional-platforms: + - linux-aarch64 + - osx-arm64