From 8b3f4964491f44149ec38d14621bee3ddfe09b71 Mon Sep 17 00:00:00 2001
From: David Seifert <dseifert@pacificbiosciences.com>
Date: Wed, 1 Aug 2018 16:31:14 +0200
Subject: [PATCH] PacBio: Initial addition of `pbcoretools`

---
 recipes/pbcoretools/build.sh  |  3 +++
 recipes/pbcoretools/meta.yaml | 47 +++++++++++++++++++++++++++++++++++
 2 files changed, 50 insertions(+)
 create mode 100644 recipes/pbcoretools/build.sh
 create mode 100644 recipes/pbcoretools/meta.yaml

diff --git a/recipes/pbcoretools/build.sh b/recipes/pbcoretools/build.sh
new file mode 100644
index 0000000000000..e45c73d5420b0
--- /dev/null
+++ b/recipes/pbcoretools/build.sh
@@ -0,0 +1,3 @@
+#!/usr/bin/env bash
+
+$PYTHON setup.py install --single-version-externally-managed --record=record.txt
diff --git a/recipes/pbcoretools/meta.yaml b/recipes/pbcoretools/meta.yaml
new file mode 100644
index 0000000000000..c82a996a50e2f
--- /dev/null
+++ b/recipes/pbcoretools/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "pbcoretools" %}
+{% set version = "0.2.4" %}
+{% set sha256 = "b8f51e615b249e2b608367ee39817cec7a90f42e01c80088a4bbecd6b378b6bd" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/PacificBiosciences/{{ name }}/releases/download/{{ version }}/{{ name }}-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+about:
+  home: https://github.com/PacificBiosciences/pbcoretools
+  license: BSD
+  summary: CLI tools and add-ons for PacBio's core APIs
+
+extra:
+  recipe-maintainers:
+    - pb-dseifert
+    - mhsieh
+
+build:
+  skip: True # [not py27]
+  number: 0
+
+requirements:
+  host:
+    - python
+    - setuptools
+    - cython
+    - numpy >=1.7.1
+    - pysam >=0.13
+    - pbcore >=1.5.1
+    - pbcommand >=1.1.1
+  run:
+    - python
+    - numpy >=1.7.1
+    - pysam >=0.13
+    - pbcore >=1.5.1
+    - pbcommand >=1.1.1
+
+test:
+  commands:
+    - bamSieve -h
+    - dataset -h
+    - pbvalidate -h