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Remove various packages from the blacklist #10269

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merged 2 commits into from
Aug 6, 2018
Merged

Remove various packages from the blacklist #10269

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8fb1ca2
Remove various packages from the blacklist
dpryan79 Aug 5, 2018
427631e
graphmap uses openmp, which is problematic with clang
dpryan79 Aug 5, 2018
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9 changes: 0 additions & 9 deletions build-fail-blacklist
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Original file line number Diff line number Diff line change
Expand Up @@ -1586,18 +1586,9 @@ recipes/ms
# GL missing, needs the extended base image
recipes/emperor

recipes/graphmap
# /opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/ld: cannot find -lz
recipes/hera


# RuntimeError: Setuptools downloading is disabled in conda build. Be sure to add all dependencies in the meta.yaml url=https://pypi.org/simple/HyPhy/
recipes/hivtrace


# [Jun 26 23:28:29] SERR ImportError: libstdc++.so.6: cannot open shared object file: No such file or directory
recipes/htseq/0.6.1

# sed: can't read /opt/conda/conda-bld/idba_1530055808563/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/bin/aclocal: No such file or directory
recipes/idba
# socket.timeout: timed out
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7 changes: 4 additions & 3 deletions recipes/graphmap/build.sh
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@@ -1,8 +1,9 @@
#!/bin/bash

export CFLAGS="-I$PREFIX/include"
export LDFLAGS="-L$PREFIX/lib"
export CPATH=${PREFIX}/include
export CPP_INCLUDE_PATH=${PREFIX}/include
export CPLUS_INCLUDE_PATH=${PREFIX}/include
export CXX_INCLUDE_PATH=${PREFIX}/include
export LIBRARY_PATH=${PREFIX}/lib

mkdir -p $PREFIX/bin

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5 changes: 3 additions & 2 deletions recipes/graphmap/meta.yaml
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Expand Up @@ -8,6 +8,7 @@ package:

build:
number: 2
skip: True # [osx]

source:
url: https://github.com/isovic/{{ name|lower }}/archive/eb8c75d68b03be95464318afa69b645a59f8f6b7.tar.gz
Expand All @@ -18,12 +19,12 @@ source:

requirements:
build:
- {{ compiler('c') }}
- {{ compiler('cxx') }}
host:
- wget
- zlib
run:
- zlib
- zlib

test:
commands:
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1 change: 1 addition & 0 deletions recipes/hera/build.sh
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Expand Up @@ -2,6 +2,7 @@

mkdir -p $PREFIX/bin

export LIBRARY_PATH=${PREFIX}/lib
if [ `uname` == Darwin ]; then
export CFLAGS="-I$PREFIX/include -fgnu89-inline -O2 -D USE_JEMALLOC -w -lz -Wl,-rpath,${PREFIX}/lib"
else
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1 change: 1 addition & 0 deletions recipes/htseq/0.6.1/meta.yaml
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Expand Up @@ -14,6 +14,7 @@ package:
requirements:
host:
- python
- cython
- numpy ==1.7.1
- matplotlib ==1.2.1
run:
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