diff --git a/recipes/deeptools/meta.yaml b/recipes/deeptools/meta.yaml
index 3896ddfa10b57..2e9a9387c1e9b 100644
--- a/recipes/deeptools/meta.yaml
+++ b/recipes/deeptools/meta.yaml
@@ -1,10 +1,10 @@
 package:
   name: deeptools
-  version: '3.1.2'
+  version: '3.1.3'
 
 source:
-  url: https://files.pythonhosted.org/packages/54/7b/a0248f8a65468f399e7956fc79761f55ff785d86775466db0d16e7af163f/deepTools-3.1.2.tar.gz
-  sha256: fc8b17f0a791b5ba6a3d6bcb32ec0731614da2397d38218217ec3d3cd6ee6129
+  url: https://files.pythonhosted.org/packages/43/0b/0ff8d6440feba7fa4e7911ab0d13bab4ce5c72c9be2ffa6633f417a7cfef/deepTools-3.1.3.tar.gz
+  sha256: bfbaf077d5206871f237fa4a8fd0da8ecf0d22f4e868fc6eeb215fd14574f3fb
 
 build:
   number: 0