From 780b95908a4cded0592a64b74f08781c347f8877 Mon Sep 17 00:00:00 2001 From: dpryan79 Date: Sat, 20 Oct 2018 22:12:24 +0200 Subject: [PATCH 1/5] Don't use r-base >=3.5, use a conda_build_config.yaml instead --- recipes/bioconductor-affy/conda_build_config.yaml | 2 ++ recipes/bioconductor-affy/meta.yaml | 4 ++-- recipes/bioconductor-affycontam/conda_build_config.yaml | 2 ++ recipes/bioconductor-affycontam/meta.yaml | 4 ++-- recipes/bioconductor-affycoretools/conda_build_config.yaml | 2 ++ recipes/bioconductor-affycoretools/meta.yaml | 4 ++-- recipes/bioconductor-affydata/conda_build_config.yaml | 2 ++ recipes/bioconductor-affydata/meta.yaml | 4 ++-- recipes/bioconductor-affyexpress/conda_build_config.yaml | 2 ++ recipes/bioconductor-affyexpress/meta.yaml | 4 ++-- recipes/bioconductor-affyilm/conda_build_config.yaml | 2 ++ recipes/bioconductor-affyilm/meta.yaml | 4 ++-- recipes/bioconductor-affypdnn/conda_build_config.yaml | 2 ++ recipes/bioconductor-affypdnn/meta.yaml | 4 ++-- recipes/bioconductor-affyplm/conda_build_config.yaml | 2 ++ recipes/bioconductor-affyplm/meta.yaml | 4 ++-- .../bioconductor-affyrnadegradation/conda_build_config.yaml | 2 ++ recipes/bioconductor-affyrnadegradation/meta.yaml | 4 ++-- recipes/bioconductor-altcdfenvs/conda_build_config.yaml | 2 ++ recipes/bioconductor-altcdfenvs/meta.yaml | 4 ++-- recipes/bioconductor-annotationhub/conda_build_config.yaml | 2 ++ recipes/bioconductor-annotationhub/meta.yaml | 4 ++-- .../bioconductor-annotationhubdata/conda_build_config.yaml | 2 ++ recipes/bioconductor-annotationhubdata/meta.yaml | 4 ++-- .../conda_build_config.yaml | 2 ++ recipes/bioconductor-arrayqualitymetrics/meta.yaml | 4 ++-- recipes/bioconductor-arraytools/conda_build_config.yaml | 2 ++ recipes/bioconductor-arraytools/meta.yaml | 4 ++-- recipes/bioconductor-atacseqqc/conda_build_config.yaml | 2 ++ recipes/bioconductor-atacseqqc/meta.yaml | 4 ++-- recipes/bioconductor-beachmat/conda_build_config.yaml | 2 ++ recipes/bioconductor-beachmat/meta.yaml | 4 ++-- recipes/bioconductor-biocinstaller/conda_build_config.yaml | 2 ++ recipes/bioconductor-biocinstaller/meta.yaml | 4 ++-- recipes/bioconductor-cager/conda_build_config.yaml | 2 ++ recipes/bioconductor-cager/meta.yaml | 4 ++-- recipes/bioconductor-cellhts2/conda_build_config.yaml | 2 ++ recipes/bioconductor-cellhts2/meta.yaml | 4 ++-- recipes/bioconductor-chippeakanno/conda_build_config.yaml | 2 ++ recipes/bioconductor-chippeakanno/meta.yaml | 4 ++-- recipes/bioconductor-chipxpress/conda_build_config.yaml | 2 ++ recipes/bioconductor-chipxpress/meta.yaml | 4 ++-- recipes/bioconductor-chronos/conda_build_config.yaml | 2 ++ recipes/bioconductor-chronos/meta.yaml | 4 ++-- recipes/bioconductor-classifyr/conda_build_config.yaml | 2 ++ recipes/bioconductor-classifyr/meta.yaml | 4 ++-- recipes/bioconductor-cn.farms/conda_build_config.yaml | 2 ++ recipes/bioconductor-cn.farms/meta.yaml | 4 ++-- recipes/bioconductor-cormotif/conda_build_config.yaml | 2 ++ recipes/bioconductor-cormotif/meta.yaml | 4 ++-- recipes/bioconductor-crisprseekplus/conda_build_config.yaml | 2 ++ recipes/bioconductor-crisprseekplus/meta.yaml | 4 ++-- recipes/bioconductor-crisprvariants/conda_build_config.yaml | 2 ++ recipes/bioconductor-crisprvariants/meta.yaml | 4 ++-- recipes/bioconductor-crlmm/conda_build_config.yaml | 2 ++ recipes/bioconductor-crlmm/meta.yaml | 4 ++-- recipes/bioconductor-csaw/conda_build_config.yaml | 2 ++ recipes/bioconductor-csaw/meta.yaml | 4 ++-- .../conda_build_config.yaml | 2 ++ recipes/bioconductor-curatedmetagenomicdata/meta.yaml | 6 ++---- .../bioconductor-curatedovariandata/conda_build_config.yaml | 2 ++ recipes/bioconductor-curatedovariandata/meta.yaml | 6 ++---- recipes/bioconductor-dchiprep/conda_build_config.yaml | 2 ++ recipes/bioconductor-dchiprep/meta.yaml | 4 ++-- recipes/bioconductor-drugvsdisease/conda_build_config.yaml | 2 ++ recipes/bioconductor-drugvsdisease/meta.yaml | 4 ++-- recipes/bioconductor-elmer/conda_build_config.yaml | 2 ++ recipes/bioconductor-elmer/meta.yaml | 6 ++---- recipes/bioconductor-epivizrdata/conda_build_config.yaml | 2 ++ recipes/bioconductor-epivizrdata/meta.yaml | 4 ++-- recipes/bioconductor-eximir/conda_build_config.yaml | 2 ++ recipes/bioconductor-eximir/meta.yaml | 4 ++-- recipes/bioconductor-experimenthub/conda_build_config.yaml | 2 ++ recipes/bioconductor-experimenthub/meta.yaml | 6 ++---- recipes/bioconductor-farms/conda_build_config.yaml | 2 ++ recipes/bioconductor-farms/meta.yaml | 4 ++-- recipes/bioconductor-ffpe/conda_build_config.yaml | 2 ++ recipes/bioconductor-ffpe/meta.yaml | 4 ++-- recipes/bioconductor-frma/conda_build_config.yaml | 2 ++ recipes/bioconductor-frma/meta.yaml | 4 ++-- recipes/bioconductor-frmatools/conda_build_config.yaml | 2 ++ recipes/bioconductor-frmatools/meta.yaml | 4 ++-- recipes/bioconductor-gcrma/conda_build_config.yaml | 2 ++ recipes/bioconductor-gcrma/meta.yaml | 4 ++-- .../conda_build_config.yaml | 2 ++ recipes/bioconductor-genomicinteractions/meta.yaml | 4 ++-- recipes/bioconductor-genomicscores/conda_build_config.yaml | 2 ++ recipes/bioconductor-genomicscores/meta.yaml | 6 ++---- recipes/bioconductor-geosubmission/conda_build_config.yaml | 2 ++ recipes/bioconductor-geosubmission/meta.yaml | 4 ++-- recipes/bioconductor-ggbio/conda_build_config.yaml | 2 ++ recipes/bioconductor-ggbio/meta.yaml | 4 ++-- recipes/bioconductor-guideseq/conda_build_config.yaml | 2 ++ recipes/bioconductor-guideseq/meta.yaml | 4 ++-- recipes/bioconductor-harshlight/conda_build_config.yaml | 2 ++ recipes/bioconductor-harshlight/meta.yaml | 4 ++-- recipes/bioconductor-hiccompare/conda_build_config.yaml | 2 ++ recipes/bioconductor-hiccompare/meta.yaml | 4 ++-- recipes/bioconductor-homo.sapiens/conda_build_config.yaml | 2 ++ recipes/bioconductor-homo.sapiens/meta.yaml | 6 ++---- recipes/bioconductor-htqpcr/conda_build_config.yaml | 2 ++ recipes/bioconductor-htqpcr/meta.yaml | 4 ++-- recipes/bioconductor-imagehts/conda_build_config.yaml | 2 ++ recipes/bioconductor-imagehts/meta.yaml | 4 ++-- recipes/bioconductor-interactionset/conda_build_config.yaml | 2 ++ recipes/bioconductor-interactionset/meta.yaml | 4 ++-- recipes/bioconductor-lmgene/conda_build_config.yaml | 2 ++ recipes/bioconductor-lmgene/meta.yaml | 4 ++-- recipes/bioconductor-logitt/conda_build_config.yaml | 2 ++ recipes/bioconductor-logitt/meta.yaml | 4 ++-- recipes/bioconductor-lumi/conda_build_config.yaml | 2 ++ recipes/bioconductor-lumi/meta.yaml | 4 ++-- recipes/bioconductor-lvsmirna/conda_build_config.yaml | 2 ++ recipes/bioconductor-lvsmirna/meta.yaml | 4 ++-- recipes/bioconductor-makecdfenv/conda_build_config.yaml | 2 ++ recipes/bioconductor-makecdfenv/meta.yaml | 4 ++-- recipes/bioconductor-mapredictdsc/conda_build_config.yaml | 2 ++ recipes/bioconductor-mapredictdsc/meta.yaml | 4 ++-- recipes/bioconductor-maskbad/conda_build_config.yaml | 2 ++ recipes/bioconductor-maskbad/meta.yaml | 4 ++-- recipes/bioconductor-mast/conda_build_config.yaml | 2 ++ recipes/bioconductor-mast/meta.yaml | 4 ++-- .../bioconductor-minimumdistance/conda_build_config.yaml | 2 ++ recipes/bioconductor-minimumdistance/meta.yaml | 4 ++-- recipes/bioconductor-mlp/conda_build_config.yaml | 2 ++ recipes/bioconductor-mlp/meta.yaml | 4 ++-- recipes/bioconductor-msnbase/conda_build_config.yaml | 2 ++ recipes/bioconductor-msnbase/meta.yaml | 4 ++-- .../conda_build_config.yaml | 2 ++ recipes/bioconductor-multiassayexperiment/meta.yaml | 4 ++-- recipes/bioconductor-oligo/conda_build_config.yaml | 2 ++ recipes/bioconductor-oligo/meta.yaml | 4 ++-- recipes/bioconductor-oligoclasses/conda_build_config.yaml | 2 ++ recipes/bioconductor-oligoclasses/meta.yaml | 4 ++-- recipes/bioconductor-organismdbi/conda_build_config.yaml | 2 ++ recipes/bioconductor-organismdbi/meta.yaml | 4 ++-- recipes/bioconductor-panp/conda_build_config.yaml | 2 ++ recipes/bioconductor-panp/meta.yaml | 4 ++-- recipes/bioconductor-pdinfobuilder/conda_build_config.yaml | 2 ++ recipes/bioconductor-pdinfobuilder/meta.yaml | 4 ++-- recipes/bioconductor-peca/conda_build_config.yaml | 2 ++ recipes/bioconductor-peca/meta.yaml | 4 ++-- .../conda_build_config.yaml | 2 ++ recipes/bioconductor-phastcons100way.ucsc.hg19/meta.yaml | 6 ++---- recipes/bioconductor-plier/conda_build_config.yaml | 2 ++ recipes/bioconductor-plier/meta.yaml | 4 ++-- recipes/bioconductor-plw/conda_build_config.yaml | 2 ++ recipes/bioconductor-plw/meta.yaml | 4 ++-- recipes/bioconductor-prebs/conda_build_config.yaml | 2 ++ recipes/bioconductor-prebs/meta.yaml | 4 ++-- .../conda_build_config.yaml | 2 ++ recipes/bioconductor-proteomicsannotationhubdata/meta.yaml | 4 ++-- recipes/bioconductor-psygenet2r/conda_build_config.yaml | 2 ++ recipes/bioconductor-psygenet2r/meta.yaml | 4 ++-- recipes/bioconductor-puma/conda_build_config.yaml | 2 ++ recipes/bioconductor-puma/meta.yaml | 4 ++-- recipes/bioconductor-pvac/conda_build_config.yaml | 2 ++ recipes/bioconductor-pvac/meta.yaml | 4 ++-- recipes/bioconductor-pvca/conda_build_config.yaml | 2 ++ recipes/bioconductor-pvca/meta.yaml | 4 ++-- recipes/bioconductor-pwomics/conda_build_config.yaml | 2 ++ recipes/bioconductor-pwomics/meta.yaml | 4 ++-- recipes/bioconductor-qpcrnorm/conda_build_config.yaml | 2 ++ recipes/bioconductor-qpcrnorm/meta.yaml | 4 ++-- recipes/bioconductor-quasr/conda_build_config.yaml | 2 ++ recipes/bioconductor-quasr/meta.yaml | 4 ++-- recipes/bioconductor-rarevariantvis/conda_build_config.yaml | 2 ++ recipes/bioconductor-rarevariantvis/meta.yaml | 4 ++-- recipes/bioconductor-rcgh/conda_build_config.yaml | 2 ++ recipes/bioconductor-rcgh/meta.yaml | 4 ++-- recipes/bioconductor-readqpcr/conda_build_config.yaml | 2 ++ recipes/bioconductor-readqpcr/meta.yaml | 4 ++-- recipes/bioconductor-refnet/conda_build_config.yaml | 2 ++ recipes/bioconductor-refnet/meta.yaml | 4 ++-- recipes/bioconductor-refplus/conda_build_config.yaml | 2 ++ recipes/bioconductor-refplus/meta.yaml | 4 ++-- recipes/bioconductor-ringo/conda_build_config.yaml | 2 ++ recipes/bioconductor-ringo/meta.yaml | 4 ++-- recipes/bioconductor-risa/conda_build_config.yaml | 2 ++ recipes/bioconductor-risa/meta.yaml | 4 ++-- recipes/bioconductor-rnits/conda_build_config.yaml | 2 ++ recipes/bioconductor-rnits/meta.yaml | 4 ++-- recipes/bioconductor-rpa/conda_build_config.yaml | 2 ++ recipes/bioconductor-rpa/meta.yaml | 4 ++-- recipes/bioconductor-sc3/conda_build_config.yaml | 2 ++ recipes/bioconductor-sc3/meta.yaml | 4 ++-- recipes/bioconductor-scan.upc/conda_build_config.yaml | 2 ++ recipes/bioconductor-scan.upc/meta.yaml | 4 ++-- recipes/bioconductor-scater/conda_build_config.yaml | 2 ++ recipes/bioconductor-scater/meta.yaml | 4 ++-- recipes/bioconductor-scnorm/conda_build_config.yaml | 2 ++ recipes/bioconductor-scnorm/meta.yaml | 5 +++-- recipes/bioconductor-scran/conda_build_config.yaml | 2 ++ recipes/bioconductor-scran/meta.yaml | 4 ++-- recipes/bioconductor-simpleaffy/conda_build_config.yaml | 2 ++ recipes/bioconductor-simpleaffy/meta.yaml | 4 ++-- .../conda_build_config.yaml | 2 ++ recipes/bioconductor-singlecellexperiment/meta.yaml | 6 ++---- recipes/bioconductor-snpchip/conda_build_config.yaml | 2 ++ recipes/bioconductor-snpchip/meta.yaml | 4 ++-- recipes/bioconductor-sscore/conda_build_config.yaml | 2 ++ recipes/bioconductor-sscore/meta.yaml | 4 ++-- recipes/bioconductor-starr/conda_build_config.yaml | 2 ++ recipes/bioconductor-starr/meta.yaml | 4 ++-- recipes/bioconductor-stategra/conda_build_config.yaml | 2 ++ recipes/bioconductor-stategra/meta.yaml | 4 ++-- recipes/bioconductor-switchde/conda_build_config.yaml | 2 ++ recipes/bioconductor-switchde/meta.yaml | 4 ++-- recipes/bioconductor-trackviewer/conda_build_config.yaml | 2 ++ recipes/bioconductor-trackviewer/meta.yaml | 4 ++-- recipes/bioconductor-turbonorm/conda_build_config.yaml | 2 ++ recipes/bioconductor-turbonorm/meta.yaml | 4 ++-- recipes/bioconductor-vanillaice/conda_build_config.yaml | 2 ++ recipes/bioconductor-vanillaice/meta.yaml | 4 ++-- .../bioconductor-variantfiltering/conda_build_config.yaml | 2 ++ recipes/bioconductor-variantfiltering/meta.yaml | 4 ++-- recipes/bioconductor-vsn/conda_build_config.yaml | 2 ++ recipes/bioconductor-vsn/meta.yaml | 4 ++-- recipes/bioconductor-wavetiling/conda_build_config.yaml | 2 ++ recipes/bioconductor-wavetiling/meta.yaml | 4 ++-- recipes/bioconductor-webbioc/conda_build_config.yaml | 2 ++ recipes/bioconductor-webbioc/meta.yaml | 4 ++-- 222 files changed, 445 insertions(+), 238 deletions(-) create mode 100644 recipes/bioconductor-affy/conda_build_config.yaml create mode 100644 recipes/bioconductor-affycontam/conda_build_config.yaml create mode 100644 recipes/bioconductor-affycoretools/conda_build_config.yaml create mode 100644 recipes/bioconductor-affydata/conda_build_config.yaml create mode 100644 recipes/bioconductor-affyexpress/conda_build_config.yaml create mode 100644 recipes/bioconductor-affyilm/conda_build_config.yaml create mode 100644 recipes/bioconductor-affypdnn/conda_build_config.yaml create mode 100644 recipes/bioconductor-affyplm/conda_build_config.yaml create mode 100644 recipes/bioconductor-affyrnadegradation/conda_build_config.yaml create mode 100644 recipes/bioconductor-altcdfenvs/conda_build_config.yaml create mode 100644 recipes/bioconductor-annotationhub/conda_build_config.yaml create mode 100644 recipes/bioconductor-annotationhubdata/conda_build_config.yaml create mode 100644 recipes/bioconductor-arrayqualitymetrics/conda_build_config.yaml create mode 100644 recipes/bioconductor-arraytools/conda_build_config.yaml create mode 100644 recipes/bioconductor-atacseqqc/conda_build_config.yaml create mode 100644 recipes/bioconductor-beachmat/conda_build_config.yaml create mode 100644 recipes/bioconductor-biocinstaller/conda_build_config.yaml create mode 100644 recipes/bioconductor-cager/conda_build_config.yaml create mode 100644 recipes/bioconductor-cellhts2/conda_build_config.yaml create mode 100644 recipes/bioconductor-chippeakanno/conda_build_config.yaml create mode 100644 recipes/bioconductor-chipxpress/conda_build_config.yaml create mode 100644 recipes/bioconductor-chronos/conda_build_config.yaml create mode 100644 recipes/bioconductor-classifyr/conda_build_config.yaml create mode 100644 recipes/bioconductor-cn.farms/conda_build_config.yaml create mode 100644 recipes/bioconductor-cormotif/conda_build_config.yaml create mode 100644 recipes/bioconductor-crisprseekplus/conda_build_config.yaml create mode 100644 recipes/bioconductor-crisprvariants/conda_build_config.yaml create mode 100644 recipes/bioconductor-crlmm/conda_build_config.yaml create mode 100644 recipes/bioconductor-csaw/conda_build_config.yaml create mode 100644 recipes/bioconductor-curatedmetagenomicdata/conda_build_config.yaml create mode 100644 recipes/bioconductor-curatedovariandata/conda_build_config.yaml create mode 100644 recipes/bioconductor-dchiprep/conda_build_config.yaml create mode 100644 recipes/bioconductor-drugvsdisease/conda_build_config.yaml create mode 100644 recipes/bioconductor-elmer/conda_build_config.yaml create mode 100644 recipes/bioconductor-epivizrdata/conda_build_config.yaml create mode 100644 recipes/bioconductor-eximir/conda_build_config.yaml create mode 100644 recipes/bioconductor-experimenthub/conda_build_config.yaml create mode 100644 recipes/bioconductor-farms/conda_build_config.yaml create mode 100644 recipes/bioconductor-ffpe/conda_build_config.yaml create mode 100644 recipes/bioconductor-frma/conda_build_config.yaml create mode 100644 recipes/bioconductor-frmatools/conda_build_config.yaml create mode 100644 recipes/bioconductor-gcrma/conda_build_config.yaml create mode 100644 recipes/bioconductor-genomicinteractions/conda_build_config.yaml create mode 100644 recipes/bioconductor-genomicscores/conda_build_config.yaml create mode 100644 recipes/bioconductor-geosubmission/conda_build_config.yaml create mode 100644 recipes/bioconductor-ggbio/conda_build_config.yaml create mode 100644 recipes/bioconductor-guideseq/conda_build_config.yaml create mode 100644 recipes/bioconductor-harshlight/conda_build_config.yaml create mode 100644 recipes/bioconductor-hiccompare/conda_build_config.yaml create mode 100644 recipes/bioconductor-homo.sapiens/conda_build_config.yaml create mode 100644 recipes/bioconductor-htqpcr/conda_build_config.yaml create mode 100644 recipes/bioconductor-imagehts/conda_build_config.yaml create mode 100644 recipes/bioconductor-interactionset/conda_build_config.yaml create mode 100644 recipes/bioconductor-lmgene/conda_build_config.yaml create mode 100644 recipes/bioconductor-logitt/conda_build_config.yaml create mode 100644 recipes/bioconductor-lumi/conda_build_config.yaml create mode 100644 recipes/bioconductor-lvsmirna/conda_build_config.yaml create mode 100644 recipes/bioconductor-makecdfenv/conda_build_config.yaml create mode 100644 recipes/bioconductor-mapredictdsc/conda_build_config.yaml create mode 100644 recipes/bioconductor-maskbad/conda_build_config.yaml create mode 100644 recipes/bioconductor-mast/conda_build_config.yaml create mode 100644 recipes/bioconductor-minimumdistance/conda_build_config.yaml create mode 100644 recipes/bioconductor-mlp/conda_build_config.yaml create mode 100644 recipes/bioconductor-msnbase/conda_build_config.yaml create mode 100644 recipes/bioconductor-multiassayexperiment/conda_build_config.yaml create mode 100644 recipes/bioconductor-oligo/conda_build_config.yaml create mode 100644 recipes/bioconductor-oligoclasses/conda_build_config.yaml create mode 100644 recipes/bioconductor-organismdbi/conda_build_config.yaml create mode 100644 recipes/bioconductor-panp/conda_build_config.yaml create mode 100644 recipes/bioconductor-pdinfobuilder/conda_build_config.yaml create mode 100644 recipes/bioconductor-peca/conda_build_config.yaml create mode 100644 recipes/bioconductor-phastcons100way.ucsc.hg19/conda_build_config.yaml create mode 100644 recipes/bioconductor-plier/conda_build_config.yaml create mode 100644 recipes/bioconductor-plw/conda_build_config.yaml create mode 100644 recipes/bioconductor-prebs/conda_build_config.yaml create mode 100644 recipes/bioconductor-proteomicsannotationhubdata/conda_build_config.yaml create mode 100644 recipes/bioconductor-psygenet2r/conda_build_config.yaml create mode 100644 recipes/bioconductor-puma/conda_build_config.yaml create mode 100644 recipes/bioconductor-pvac/conda_build_config.yaml create mode 100644 recipes/bioconductor-pvca/conda_build_config.yaml create mode 100644 recipes/bioconductor-pwomics/conda_build_config.yaml create mode 100644 recipes/bioconductor-qpcrnorm/conda_build_config.yaml create mode 100644 recipes/bioconductor-quasr/conda_build_config.yaml create mode 100644 recipes/bioconductor-rarevariantvis/conda_build_config.yaml create mode 100644 recipes/bioconductor-rcgh/conda_build_config.yaml create mode 100644 recipes/bioconductor-readqpcr/conda_build_config.yaml create mode 100644 recipes/bioconductor-refnet/conda_build_config.yaml create mode 100644 recipes/bioconductor-refplus/conda_build_config.yaml create mode 100644 recipes/bioconductor-ringo/conda_build_config.yaml create mode 100644 recipes/bioconductor-risa/conda_build_config.yaml create mode 100644 recipes/bioconductor-rnits/conda_build_config.yaml create mode 100644 recipes/bioconductor-rpa/conda_build_config.yaml create mode 100644 recipes/bioconductor-sc3/conda_build_config.yaml create mode 100644 recipes/bioconductor-scan.upc/conda_build_config.yaml create mode 100644 recipes/bioconductor-scater/conda_build_config.yaml create mode 100644 recipes/bioconductor-scnorm/conda_build_config.yaml create mode 100644 recipes/bioconductor-scran/conda_build_config.yaml create mode 100644 recipes/bioconductor-simpleaffy/conda_build_config.yaml create mode 100644 recipes/bioconductor-singlecellexperiment/conda_build_config.yaml create mode 100644 recipes/bioconductor-snpchip/conda_build_config.yaml create mode 100644 recipes/bioconductor-sscore/conda_build_config.yaml create mode 100644 recipes/bioconductor-starr/conda_build_config.yaml create mode 100644 recipes/bioconductor-stategra/conda_build_config.yaml create mode 100644 recipes/bioconductor-switchde/conda_build_config.yaml create mode 100644 recipes/bioconductor-trackviewer/conda_build_config.yaml create mode 100644 recipes/bioconductor-turbonorm/conda_build_config.yaml create mode 100644 recipes/bioconductor-vanillaice/conda_build_config.yaml create mode 100644 recipes/bioconductor-variantfiltering/conda_build_config.yaml create mode 100644 recipes/bioconductor-vsn/conda_build_config.yaml create mode 100644 recipes/bioconductor-wavetiling/conda_build_config.yaml create mode 100644 recipes/bioconductor-webbioc/conda_build_config.yaml diff --git a/recipes/bioconductor-affy/conda_build_config.yaml b/recipes/bioconductor-affy/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-affy/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-affy/meta.yaml b/recipes/bioconductor-affy/meta.yaml index 6b5378e8b4f4b..92b0d60752a38 100644 --- a/recipes/bioconductor-affy/meta.yaml +++ b/recipes/bioconductor-affy/meta.yaml @@ -24,7 +24,7 @@ requirements: - 'bioconductor-biocinstaller >=1.30.0,<1.32.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affyio >=1.50.0,<1.52.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' @@ -32,7 +32,7 @@ requirements: - 'bioconductor-biocinstaller >=1.30.0,<1.32.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base build: - {{ compiler('c') }} - automake diff --git a/recipes/bioconductor-affycontam/conda_build_config.yaml b/recipes/bioconductor-affycontam/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-affycontam/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-affycontam/meta.yaml b/recipes/bioconductor-affycontam/meta.yaml index 93426db985938..5daf7ca87f605 100644 --- a/recipes/bioconductor-affycontam/meta.yaml +++ b/recipes/bioconductor-affycontam/meta.yaml @@ -21,12 +21,12 @@ requirements: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-affydata >=1.28.0,<1.30.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-affydata >=1.28.0,<1.30.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-affycoretools/conda_build_config.yaml b/recipes/bioconductor-affycoretools/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-affycoretools/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-affycoretools/meta.yaml b/recipes/bioconductor-affycoretools/meta.yaml index 0bb5f58ae5b3a..caaccedaebb87 100644 --- a/recipes/bioconductor-affycoretools/meta.yaml +++ b/recipes/bioconductor-affycoretools/meta.yaml @@ -29,7 +29,7 @@ requirements: - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-reportingtools >=2.20.0,<2.22.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-dbi - r-ggplot2 - r-gplots @@ -49,7 +49,7 @@ requirements: - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-reportingtools >=2.20.0,<2.22.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-dbi - r-ggplot2 - r-gplots diff --git a/recipes/bioconductor-affydata/conda_build_config.yaml b/recipes/bioconductor-affydata/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-affydata/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-affydata/meta.yaml b/recipes/bioconductor-affydata/meta.yaml index 6b2f5f5ff5c1f..87b08e0c5f6e5 100644 --- a/recipes/bioconductor-affydata/meta.yaml +++ b/recipes/bioconductor-affydata/meta.yaml @@ -19,10 +19,10 @@ build: requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - - r-base >=3.5 + - r-base - wget test: commands: diff --git a/recipes/bioconductor-affyexpress/conda_build_config.yaml b/recipes/bioconductor-affyexpress/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-affyexpress/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-affyexpress/meta.yaml b/recipes/bioconductor-affyexpress/meta.yaml index 09a3424310b93..54d55d3514f9a 100644 --- a/recipes/bioconductor-affyexpress/meta.yaml +++ b/recipes/bioconductor-affyexpress/meta.yaml @@ -20,11 +20,11 @@ requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-affyilm/conda_build_config.yaml b/recipes/bioconductor-affyilm/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-affyilm/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-affyilm/meta.yaml b/recipes/bioconductor-affyilm/meta.yaml index a15c69f697ad4..a468e62aee55e 100644 --- a/recipes/bioconductor-affyilm/meta.yaml +++ b/recipes/bioconductor-affyilm/meta.yaml @@ -22,13 +22,13 @@ requirements: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-gcrma >=2.52.0,<2.54.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affxparser >=1.52.0,<1.54.0' - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-gcrma >=2.52.0,<2.54.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-affypdnn/conda_build_config.yaml b/recipes/bioconductor-affypdnn/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-affypdnn/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-affypdnn/meta.yaml b/recipes/bioconductor-affypdnn/meta.yaml index ff27026a52cd2..a0d5c9ec481a6 100644 --- a/recipes/bioconductor-affypdnn/meta.yaml +++ b/recipes/bioconductor-affypdnn/meta.yaml @@ -19,10 +19,10 @@ build: requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-affyplm/conda_build_config.yaml b/recipes/bioconductor-affyplm/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-affyplm/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-affyplm/meta.yaml b/recipes/bioconductor-affyplm/meta.yaml index aad36c115eebd..4f33493ff8be3 100644 --- a/recipes/bioconductor-affyplm/meta.yaml +++ b/recipes/bioconductor-affyplm/meta.yaml @@ -24,7 +24,7 @@ requirements: - 'bioconductor-gcrma >=2.52.0,<2.54.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' @@ -32,7 +32,7 @@ requirements: - 'bioconductor-gcrma >=2.52.0,<2.54.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base build: - {{ compiler('c') }} - make diff --git a/recipes/bioconductor-affyrnadegradation/conda_build_config.yaml b/recipes/bioconductor-affyrnadegradation/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-affyrnadegradation/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-affyrnadegradation/meta.yaml b/recipes/bioconductor-affyrnadegradation/meta.yaml index badc57ea3e28a..1e5469e30d177 100644 --- a/recipes/bioconductor-affyrnadegradation/meta.yaml +++ b/recipes/bioconductor-affyrnadegradation/meta.yaml @@ -19,10 +19,10 @@ build: requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-altcdfenvs/conda_build_config.yaml b/recipes/bioconductor-altcdfenvs/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-altcdfenvs/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-altcdfenvs/meta.yaml b/recipes/bioconductor-altcdfenvs/meta.yaml index 91cb259316bb3..36c2babbd3e96 100644 --- a/recipes/bioconductor-altcdfenvs/meta.yaml +++ b/recipes/bioconductor-altcdfenvs/meta.yaml @@ -25,7 +25,7 @@ requirements: - 'bioconductor-hypergraph >=1.52.0,<1.54.0' - 'bioconductor-makecdfenv >=1.56.0,<1.58.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' @@ -34,7 +34,7 @@ requirements: - 'bioconductor-hypergraph >=1.52.0,<1.54.0' - 'bioconductor-makecdfenv >=1.56.0,<1.58.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-annotationhub/conda_build_config.yaml b/recipes/bioconductor-annotationhub/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-annotationhub/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-annotationhub/meta.yaml b/recipes/bioconductor-annotationhub/meta.yaml index 53f3a04de4aaa..21f5b0a0b1e22 100644 --- a/recipes/bioconductor-annotationhub/meta.yaml +++ b/recipes/bioconductor-annotationhub/meta.yaml @@ -23,7 +23,7 @@ requirements: - 'bioconductor-biocinstaller >=1.30.0,<1.32.0' - 'bioconductor-interactivedisplaybase >=1.18.0,<1.20.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-curl - r-httr - r-rsqlite @@ -34,7 +34,7 @@ requirements: - 'bioconductor-biocinstaller >=1.30.0,<1.32.0' - 'bioconductor-interactivedisplaybase >=1.18.0,<1.20.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-curl - r-httr - r-rsqlite diff --git a/recipes/bioconductor-annotationhubdata/conda_build_config.yaml b/recipes/bioconductor-annotationhubdata/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-annotationhubdata/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-annotationhubdata/meta.yaml b/recipes/bioconductor-annotationhubdata/meta.yaml index 66ef53c5b50ff..62b076530efdf 100644 --- a/recipes/bioconductor-annotationhubdata/meta.yaml +++ b/recipes/bioconductor-annotationhubdata/meta.yaml @@ -36,7 +36,7 @@ requirements: - 'bioconductor-rsamtools >=1.32.3,<1.34.0' - 'bioconductor-rtracklayer >=1.40.6,<1.42.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-dbi - 'r-futile.logger >=1.3.0' - r-jsonlite @@ -62,7 +62,7 @@ requirements: - 'bioconductor-rsamtools >=1.32.3,<1.34.0' - 'bioconductor-rtracklayer >=1.40.6,<1.42.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-dbi - 'r-futile.logger >=1.3.0' - r-jsonlite diff --git a/recipes/bioconductor-arrayqualitymetrics/conda_build_config.yaml b/recipes/bioconductor-arrayqualitymetrics/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-arrayqualitymetrics/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-arrayqualitymetrics/meta.yaml b/recipes/bioconductor-arrayqualitymetrics/meta.yaml index 42f655e931b82..cbb80e0d3b7e6 100644 --- a/recipes/bioconductor-arrayqualitymetrics/meta.yaml +++ b/recipes/bioconductor-arrayqualitymetrics/meta.yaml @@ -25,7 +25,7 @@ requirements: - 'bioconductor-genefilter >=1.62.0,<1.64.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - - r-base >=3.5 + - r-base - 'r-cairo >=1.4-6' - 'r-gridsvg >=1.4-3' - r-hmisc @@ -43,7 +43,7 @@ requirements: - 'bioconductor-genefilter >=1.62.0,<1.64.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - - r-base >=3.5 + - r-base - 'r-cairo >=1.4-6' - 'r-gridsvg >=1.4-3' - r-hmisc diff --git a/recipes/bioconductor-arraytools/conda_build_config.yaml b/recipes/bioconductor-arraytools/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-arraytools/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-arraytools/meta.yaml b/recipes/bioconductor-arraytools/meta.yaml index 3591203f9fa31..a079e1dbbbbcc 100644 --- a/recipes/bioconductor-arraytools/meta.yaml +++ b/recipes/bioconductor-arraytools/meta.yaml @@ -21,13 +21,13 @@ requirements: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - - r-base >=3.5 + - r-base - r-xtable run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - - r-base >=3.5 + - r-base - r-xtable test: commands: diff --git a/recipes/bioconductor-atacseqqc/conda_build_config.yaml b/recipes/bioconductor-atacseqqc/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-atacseqqc/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-atacseqqc/meta.yaml b/recipes/bioconductor-atacseqqc/meta.yaml index 4c5f8e2d0a808..f95b249a1d027 100644 --- a/recipes/bioconductor-atacseqqc/meta.yaml +++ b/recipes/bioconductor-atacseqqc/meta.yaml @@ -32,7 +32,7 @@ requirements: - 'bioconductor-rsamtools >=1.32.3,<1.34.0' - 'bioconductor-rtracklayer >=1.40.6,<1.42.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-kernsmooth - r-preseqr - r-randomforest @@ -51,7 +51,7 @@ requirements: - 'bioconductor-rsamtools >=1.32.3,<1.34.0' - 'bioconductor-rtracklayer >=1.40.6,<1.42.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-kernsmooth - r-preseqr - r-randomforest diff --git a/recipes/bioconductor-beachmat/conda_build_config.yaml b/recipes/bioconductor-beachmat/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-beachmat/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-beachmat/meta.yaml b/recipes/bioconductor-beachmat/meta.yaml index bd4d1fc90a456..4060272cc7a27 100644 --- a/recipes/bioconductor-beachmat/meta.yaml +++ b/recipes/bioconductor-beachmat/meta.yaml @@ -22,14 +22,14 @@ requirements: - 'bioconductor-hdf5array >=1.8.1,<1.10.0' - 'bioconductor-rhdf5 >=2.24.0,<2.26.0' - 'bioconductor-rhdf5lib >=1.2.1,<1.4.0' - - r-base >=3.5 + - r-base - 'r-rcpp >=0.12.14' run: - 'bioconductor-delayedarray >=0.6.6,<0.8.0' - 'bioconductor-hdf5array >=1.8.1,<1.10.0' - 'bioconductor-rhdf5 >=2.24.0,<2.26.0' - 'bioconductor-rhdf5lib >=1.2.1,<1.4.0' - - r-base >=3.5 + - r-base - 'r-rcpp >=0.12.14' build: - {{ compiler('c') }} diff --git a/recipes/bioconductor-biocinstaller/conda_build_config.yaml b/recipes/bioconductor-biocinstaller/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-biocinstaller/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-biocinstaller/meta.yaml b/recipes/bioconductor-biocinstaller/meta.yaml index ca4d7426edf58..d3fa05009189a 100644 --- a/recipes/bioconductor-biocinstaller/meta.yaml +++ b/recipes/bioconductor-biocinstaller/meta.yaml @@ -18,9 +18,9 @@ build: - lib/ requirements: host: - - r-base >=3.5.0 + - r-base run: - - r-base >=3.5.0 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-cager/conda_build_config.yaml b/recipes/bioconductor-cager/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-cager/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-cager/meta.yaml b/recipes/bioconductor-cager/meta.yaml index e21ae8fe78e01..dc985ba8818b5 100644 --- a/recipes/bioconductor-cager/meta.yaml +++ b/recipes/bioconductor-cager/meta.yaml @@ -31,7 +31,7 @@ requirements: - 'bioconductor-rtracklayer >=1.40.6,<1.42.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-beanplot - r-data.table - 'r-ggplot2 >=2.2.0' @@ -59,7 +59,7 @@ requirements: - 'bioconductor-rtracklayer >=1.40.6,<1.42.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-beanplot - r-data.table - 'r-ggplot2 >=2.2.0' diff --git a/recipes/bioconductor-cellhts2/conda_build_config.yaml b/recipes/bioconductor-cellhts2/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-cellhts2/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-cellhts2/meta.yaml b/recipes/bioconductor-cellhts2/meta.yaml index 9ac1271e71fad..58c4173232b2b 100644 --- a/recipes/bioconductor-cellhts2/meta.yaml +++ b/recipes/bioconductor-cellhts2/meta.yaml @@ -26,7 +26,7 @@ requirements: - 'bioconductor-prada >=1.56.0,<1.58.0' - 'bioconductor-splots >=1.46.0,<1.48.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - - r-base >=3.5 + - r-base - r-hwriter - r-locfit - r-rcolorbrewer @@ -39,7 +39,7 @@ requirements: - 'bioconductor-prada >=1.56.0,<1.58.0' - 'bioconductor-splots >=1.46.0,<1.48.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - - r-base >=3.5 + - r-base - r-hwriter - r-locfit - r-rcolorbrewer diff --git a/recipes/bioconductor-chippeakanno/conda_build_config.yaml b/recipes/bioconductor-chippeakanno/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-chippeakanno/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-chippeakanno/meta.yaml b/recipes/bioconductor-chippeakanno/meta.yaml index bc816c275fef1..6a77f5238d575 100644 --- a/recipes/bioconductor-chippeakanno/meta.yaml +++ b/recipes/bioconductor-chippeakanno/meta.yaml @@ -41,7 +41,7 @@ requirements: - 'bioconductor-rsamtools >=1.32.3,<1.34.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-dbi - r-idr - r-matrixstats @@ -71,7 +71,7 @@ requirements: - 'bioconductor-rsamtools >=1.32.3,<1.34.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-dbi - r-idr - r-matrixstats diff --git a/recipes/bioconductor-chipxpress/conda_build_config.yaml b/recipes/bioconductor-chipxpress/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-chipxpress/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-chipxpress/meta.yaml b/recipes/bioconductor-chipxpress/meta.yaml index 099d25044f5dc..4c177ebc4fa06 100644 --- a/recipes/bioconductor-chipxpress/meta.yaml +++ b/recipes/bioconductor-chipxpress/meta.yaml @@ -23,7 +23,7 @@ requirements: - 'bioconductor-chipxpressdata >=1.18.0,<1.20.0' - 'bioconductor-frma >=1.32.0,<1.34.0' - 'bioconductor-geoquery >=2.48.0,<2.50.0' - - r-base >=3.5 + - r-base - r-biganalytics - r-bigmemory run: @@ -32,7 +32,7 @@ requirements: - 'bioconductor-chipxpressdata >=1.18.0,<1.20.0' - 'bioconductor-frma >=1.32.0,<1.34.0' - 'bioconductor-geoquery >=2.48.0,<2.50.0' - - r-base >=3.5 + - r-base - r-biganalytics - r-bigmemory test: diff --git a/recipes/bioconductor-chronos/conda_build_config.yaml b/recipes/bioconductor-chronos/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-chronos/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-chronos/meta.yaml b/recipes/bioconductor-chronos/meta.yaml index 5039a1b082a45..dd70faff781e5 100644 --- a/recipes/bioconductor-chronos/meta.yaml +++ b/recipes/bioconductor-chronos/meta.yaml @@ -21,7 +21,7 @@ requirements: - 'bioconductor-biomart >=2.36.1,<2.38.0' - 'bioconductor-graph >=1.58.0,<1.60.0' - 'bioconductor-rbgl >=1.56.0,<1.58.0' - - r-base >=3.5 + - r-base - r-circlize - r-doparallel - r-foreach @@ -32,7 +32,7 @@ requirements: - 'bioconductor-biomart >=2.36.1,<2.38.0' - 'bioconductor-graph >=1.58.0,<1.60.0' - 'bioconductor-rbgl >=1.56.0,<1.58.0' - - r-base >=3.5 + - r-base - r-circlize - r-doparallel - r-foreach diff --git a/recipes/bioconductor-classifyr/conda_build_config.yaml b/recipes/bioconductor-classifyr/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-classifyr/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-classifyr/meta.yaml b/recipes/bioconductor-classifyr/meta.yaml index 01885e8cf90c6..043c5d728078e 100644 --- a/recipes/bioconductor-classifyr/meta.yaml +++ b/recipes/bioconductor-classifyr/meta.yaml @@ -21,14 +21,14 @@ requirements: - 'bioconductor-biocparallel >=1.14.2,<1.16.0' - 'bioconductor-multiassayexperiment >=1.6.0,<1.8.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-locfit - r-plyr run: - 'bioconductor-biocparallel >=1.14.2,<1.16.0' - 'bioconductor-multiassayexperiment >=1.6.0,<1.8.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-locfit - r-plyr test: diff --git a/recipes/bioconductor-cn.farms/conda_build_config.yaml b/recipes/bioconductor-cn.farms/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-cn.farms/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-cn.farms/meta.yaml b/recipes/bioconductor-cn.farms/meta.yaml index a52495c181315..f979c43c8c3ab 100644 --- a/recipes/bioconductor-cn.farms/meta.yaml +++ b/recipes/bioconductor-cn.farms/meta.yaml @@ -24,7 +24,7 @@ requirements: - 'bioconductor-oligo >=1.44.0,<1.46.0' - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base - r-dbi - r-ff - r-lattice @@ -36,7 +36,7 @@ requirements: - 'bioconductor-oligo >=1.44.0,<1.46.0' - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base - r-dbi - r-ff - r-lattice diff --git a/recipes/bioconductor-cormotif/conda_build_config.yaml b/recipes/bioconductor-cormotif/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-cormotif/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-cormotif/meta.yaml b/recipes/bioconductor-cormotif/meta.yaml index b174cd44486af..70d3c05b263c1 100644 --- a/recipes/bioconductor-cormotif/meta.yaml +++ b/recipes/bioconductor-cormotif/meta.yaml @@ -20,11 +20,11 @@ requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-crisprseekplus/conda_build_config.yaml b/recipes/bioconductor-crisprseekplus/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-crisprseekplus/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-crisprseekplus/meta.yaml b/recipes/bioconductor-crisprseekplus/meta.yaml index cf79ca8602a8b..a99bf1d94d729 100644 --- a/recipes/bioconductor-crisprseekplus/meta.yaml +++ b/recipes/bioconductor-crisprseekplus/meta.yaml @@ -25,7 +25,7 @@ requirements: - 'bioconductor-genomicfeatures >=1.32.2,<1.34.0' - 'bioconductor-genomicranges >=1.32.7,<1.34.0' - 'bioconductor-guideseq >=1.10.0,<1.12.0' - - r-base >=3.5 + - r-base - r-dt - r-hash - r-shiny @@ -38,7 +38,7 @@ requirements: - 'bioconductor-genomicfeatures >=1.32.2,<1.34.0' - 'bioconductor-genomicranges >=1.32.7,<1.34.0' - 'bioconductor-guideseq >=1.10.0,<1.12.0' - - r-base >=3.5 + - r-base - r-dt - r-hash - r-shiny diff --git a/recipes/bioconductor-crisprvariants/conda_build_config.yaml b/recipes/bioconductor-crisprvariants/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-crisprvariants/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-crisprvariants/meta.yaml b/recipes/bioconductor-crisprvariants/meta.yaml index 32c8d3c4d2a8a..7b58deaf33cde 100644 --- a/recipes/bioconductor-crisprvariants/meta.yaml +++ b/recipes/bioconductor-crisprvariants/meta.yaml @@ -27,7 +27,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-rsamtools >=1.32.3,<1.34.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - 'r-ggplot2 >=2.2.0' - r-gridextra - r-reshape2 @@ -41,7 +41,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-rsamtools >=1.32.3,<1.34.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - 'r-ggplot2 >=2.2.0' - r-gridextra - r-reshape2 diff --git a/recipes/bioconductor-crlmm/conda_build_config.yaml b/recipes/bioconductor-crlmm/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-crlmm/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-crlmm/meta.yaml b/recipes/bioconductor-crlmm/meta.yaml index f58d4cbec4442..329219b07dd8e 100644 --- a/recipes/bioconductor-crlmm/meta.yaml +++ b/recipes/bioconductor-crlmm/meta.yaml @@ -26,7 +26,7 @@ requirements: - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - 'bioconductor-snpchip >=2.26.0,<2.28.0' - - r-base >=3.5 + - r-base - r-beanplot - r-ellipse - r-ff @@ -45,7 +45,7 @@ requirements: - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - 'bioconductor-snpchip >=2.26.0,<2.28.0' - - r-base >=3.5 + - r-base - r-beanplot - r-ellipse - r-ff diff --git a/recipes/bioconductor-csaw/conda_build_config.yaml b/recipes/bioconductor-csaw/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-csaw/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-csaw/meta.yaml b/recipes/bioconductor-csaw/meta.yaml index 5365d37c65c5d..6675885ee89c7 100644 --- a/recipes/bioconductor-csaw/meta.yaml +++ b/recipes/bioconductor-csaw/meta.yaml @@ -31,7 +31,7 @@ requirements: - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base - r-rcpp run: - 'bioconductor-annotationdbi >=1.42.1,<1.44.0' @@ -47,7 +47,7 @@ requirements: - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base - r-rcpp build: - {{ compiler('c') }} diff --git a/recipes/bioconductor-curatedmetagenomicdata/conda_build_config.yaml b/recipes/bioconductor-curatedmetagenomicdata/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-curatedmetagenomicdata/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-curatedmetagenomicdata/meta.yaml b/recipes/bioconductor-curatedmetagenomicdata/meta.yaml index 8c0c2ea838988..b44a073ec828d 100644 --- a/recipes/bioconductor-curatedmetagenomicdata/meta.yaml +++ b/recipes/bioconductor-curatedmetagenomicdata/meta.yaml @@ -22,7 +22,7 @@ requirements: - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-experimenthub >=1.6.1,<1.8.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - 'r-dplyr >=0.5.0' - r-magrittr - r-tidyr @@ -31,7 +31,7 @@ requirements: - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-experimenthub >=1.6.1,<1.8.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - 'r-dplyr >=0.5.0' - r-magrittr - r-tidyr @@ -43,5 +43,3 @@ about: home: 'http://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html' license: Artistic-2.0 summary: ' The curatedMetagenomicData package provides microbial taxonomic, functional, and gene marker abundance for samples collected from different bodysites.' - - diff --git a/recipes/bioconductor-curatedovariandata/conda_build_config.yaml b/recipes/bioconductor-curatedovariandata/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-curatedovariandata/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-curatedovariandata/meta.yaml b/recipes/bioconductor-curatedovariandata/meta.yaml index 5943f4ea5e6d7..652fd76d63ed4 100644 --- a/recipes/bioconductor-curatedovariandata/meta.yaml +++ b/recipes/bioconductor-curatedovariandata/meta.yaml @@ -20,11 +20,11 @@ requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' - - r-base >=3.5 + - r-base - wget test: commands: @@ -33,5 +33,3 @@ about: home: 'http://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html' license: Artistic-2.0 summary: 'The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer.' - - diff --git a/recipes/bioconductor-dchiprep/conda_build_config.yaml b/recipes/bioconductor-dchiprep/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-dchiprep/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-dchiprep/meta.yaml b/recipes/bioconductor-dchiprep/meta.yaml index d411a59011a8e..f55d5b0bd57f4 100644 --- a/recipes/bioconductor-dchiprep/meta.yaml +++ b/recipes/bioconductor-dchiprep/meta.yaml @@ -25,7 +25,7 @@ requirements: - 'bioconductor-soggi >=1.12.0,<1.14.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - r-assertthat - - r-base >=3.5 + - r-base - r-fdrtool - r-ggplot2 - r-plyr @@ -41,7 +41,7 @@ requirements: - 'bioconductor-soggi >=1.12.0,<1.14.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - r-assertthat - - r-base >=3.5 + - r-base - r-fdrtool - r-ggplot2 - r-plyr diff --git a/recipes/bioconductor-drugvsdisease/conda_build_config.yaml b/recipes/bioconductor-drugvsdisease/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-drugvsdisease/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-drugvsdisease/meta.yaml b/recipes/bioconductor-drugvsdisease/meta.yaml index d07744135f437..b393e73ff0ce7 100644 --- a/recipes/bioconductor-drugvsdisease/meta.yaml +++ b/recipes/bioconductor-drugvsdisease/meta.yaml @@ -31,7 +31,7 @@ requirements: - 'bioconductor-hgu133plus2.db >=3.2.3,<3.4.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-qvalue >=2.12.0,<2.14.0' - - r-base >=3.5 + - r-base - r-runit - r-xtable run: @@ -48,7 +48,7 @@ requirements: - 'bioconductor-hgu133plus2.db >=3.2.3,<3.4.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-qvalue >=2.12.0,<2.14.0' - - r-base >=3.5 + - r-base - r-runit - r-xtable test: diff --git a/recipes/bioconductor-elmer/conda_build_config.yaml b/recipes/bioconductor-elmer/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-elmer/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-elmer/meta.yaml b/recipes/bioconductor-elmer/meta.yaml index a4a622f8a5311..c983ca8b8e4b2 100644 --- a/recipes/bioconductor-elmer/meta.yaml +++ b/recipes/bioconductor-elmer/meta.yaml @@ -30,7 +30,7 @@ requirements: - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - 'bioconductor-tcgabiolinks >=2.8.4,<2.10.0' - - r-base >=3.5 + - r-base - r-circlize - r-doparallel - r-downloader @@ -62,7 +62,7 @@ requirements: - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - 'bioconductor-tcgabiolinks >=2.8.4,<2.10.0' - - r-base >=3.5 + - r-base - r-circlize - r-doparallel - r-downloader @@ -88,5 +88,3 @@ about: home: 'http://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: GPL-3 summary: 'ELMER is designed to use DNA methylation and gene expression from a large number of samples to infere regulatory element landscape and transcription factor network in primary tissue.' - - diff --git a/recipes/bioconductor-epivizrdata/conda_build_config.yaml b/recipes/bioconductor-epivizrdata/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-epivizrdata/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-epivizrdata/meta.yaml b/recipes/bioconductor-epivizrdata/meta.yaml index 1f95bed13b523..0cdd89356bbc3 100644 --- a/recipes/bioconductor-epivizrdata/meta.yaml +++ b/recipes/bioconductor-epivizrdata/meta.yaml @@ -28,7 +28,7 @@ requirements: - 'bioconductor-organismdbi >=1.22.0,<1.24.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-ensembldb >=2.4.1,<2.6.0' @@ -40,7 +40,7 @@ requirements: - 'bioconductor-organismdbi >=1.22.0,<1.24.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-eximir/conda_build_config.yaml b/recipes/bioconductor-eximir/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-eximir/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-eximir/meta.yaml b/recipes/bioconductor-eximir/meta.yaml index 42aac146be439..3ddee083dae78 100644 --- a/recipes/bioconductor-eximir/meta.yaml +++ b/recipes/bioconductor-eximir/meta.yaml @@ -23,14 +23,14 @@ requirements: - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-affyio >=1.50.0,<1.52.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-experimenthub/conda_build_config.yaml b/recipes/bioconductor-experimenthub/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-experimenthub/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-experimenthub/meta.yaml b/recipes/bioconductor-experimenthub/meta.yaml index a0632135616df..9b6030e6595f8 100644 --- a/recipes/bioconductor-experimenthub/meta.yaml +++ b/recipes/bioconductor-experimenthub/meta.yaml @@ -22,14 +22,14 @@ requirements: - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' - 'bioconductor-biocinstaller >=1.30.0,<1.32.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-curl run: - 'bioconductor-annotationhub >=2.12.1,<2.14.0' - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' - 'bioconductor-biocinstaller >=1.30.0,<1.32.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-curl test: commands: @@ -38,5 +38,3 @@ about: home: 'http://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: Artistic-2.0 summary: 'This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.' - - diff --git a/recipes/bioconductor-farms/conda_build_config.yaml b/recipes/bioconductor-farms/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-farms/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-farms/meta.yaml b/recipes/bioconductor-farms/meta.yaml index 589fbdab94ecf..da392428ee9da 100644 --- a/recipes/bioconductor-farms/meta.yaml +++ b/recipes/bioconductor-farms/meta.yaml @@ -20,12 +20,12 @@ requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base - r-mass run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base - r-mass test: commands: diff --git a/recipes/bioconductor-ffpe/conda_build_config.yaml b/recipes/bioconductor-ffpe/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-ffpe/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-ffpe/meta.yaml b/recipes/bioconductor-ffpe/meta.yaml index d62acbb8f88cb..d11d5a2433cb6 100644 --- a/recipes/bioconductor-ffpe/meta.yaml +++ b/recipes/bioconductor-ffpe/meta.yaml @@ -23,7 +23,7 @@ requirements: - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' - 'bioconductor-lumi >=2.32.0,<2.34.0' - 'bioconductor-methylumi >=2.26.0,<2.28.0' - - r-base >=3.5 + - r-base - r-sfsmisc - r-ttr run: @@ -32,7 +32,7 @@ requirements: - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' - 'bioconductor-lumi >=2.32.0,<2.34.0' - 'bioconductor-methylumi >=2.26.0,<2.28.0' - - r-base >=3.5 + - r-base - r-sfsmisc - r-ttr test: diff --git a/recipes/bioconductor-frma/conda_build_config.yaml b/recipes/bioconductor-frma/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-frma/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-frma/meta.yaml b/recipes/bioconductor-frma/meta.yaml index 547bbf10b73b8..8266a972793cd 100644 --- a/recipes/bioconductor-frma/meta.yaml +++ b/recipes/bioconductor-frma/meta.yaml @@ -24,7 +24,7 @@ requirements: - 'bioconductor-oligo >=1.44.0,<1.46.0' - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base - r-dbi - r-mass run: @@ -34,7 +34,7 @@ requirements: - 'bioconductor-oligo >=1.44.0,<1.46.0' - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base - r-dbi - r-mass test: diff --git a/recipes/bioconductor-frmatools/conda_build_config.yaml b/recipes/bioconductor-frmatools/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-frmatools/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-frmatools/meta.yaml b/recipes/bioconductor-frmatools/meta.yaml index 13af075677948..4a3a1adf39c31 100644 --- a/recipes/bioconductor-frmatools/meta.yaml +++ b/recipes/bioconductor-frmatools/meta.yaml @@ -21,13 +21,13 @@ requirements: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base - r-dbi run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base - r-dbi test: commands: diff --git a/recipes/bioconductor-gcrma/conda_build_config.yaml b/recipes/bioconductor-gcrma/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-gcrma/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-gcrma/meta.yaml b/recipes/bioconductor-gcrma/meta.yaml index b4d4fd6ea8973..7a84db87751a7 100644 --- a/recipes/bioconductor-gcrma/meta.yaml +++ b/recipes/bioconductor-gcrma/meta.yaml @@ -24,7 +24,7 @@ requirements: - 'bioconductor-biocinstaller >=1.30.0,<1.32.0' - 'bioconductor-biostrings >=2.48.0,<2.50.0' - 'bioconductor-xvector >=0.20.0,<0.22.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-affyio >=1.50.0,<1.52.0' @@ -32,7 +32,7 @@ requirements: - 'bioconductor-biocinstaller >=1.30.0,<1.32.0' - 'bioconductor-biostrings >=2.48.0,<2.50.0' - 'bioconductor-xvector >=0.20.0,<0.22.0' - - r-base >=3.5 + - r-base build: - {{ compiler('c') }} - make diff --git a/recipes/bioconductor-genomicinteractions/conda_build_config.yaml b/recipes/bioconductor-genomicinteractions/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-genomicinteractions/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-genomicinteractions/meta.yaml b/recipes/bioconductor-genomicinteractions/meta.yaml index cba271645dd92..c62c5de64acb3 100644 --- a/recipes/bioconductor-genomicinteractions/meta.yaml +++ b/recipes/bioconductor-genomicinteractions/meta.yaml @@ -28,7 +28,7 @@ requirements: - 'bioconductor-rsamtools >=1.32.3,<1.34.0' - 'bioconductor-rtracklayer >=1.40.6,<1.42.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-data.table - r-dplyr - r-ggplot2 @@ -46,7 +46,7 @@ requirements: - 'bioconductor-rsamtools >=1.32.3,<1.34.0' - 'bioconductor-rtracklayer >=1.40.6,<1.42.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-data.table - r-dplyr - r-ggplot2 diff --git a/recipes/bioconductor-genomicscores/conda_build_config.yaml b/recipes/bioconductor-genomicscores/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-genomicscores/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-genomicscores/meta.yaml b/recipes/bioconductor-genomicscores/meta.yaml index d47c99c9cc466..0d7251ab91405 100644 --- a/recipes/bioconductor-genomicscores/meta.yaml +++ b/recipes/bioconductor-genomicscores/meta.yaml @@ -27,7 +27,7 @@ requirements: - 'bioconductor-genomicranges >=1.32.7,<1.34.0' - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-xml run: - 'bioconductor-annotationhub >=2.12.1,<2.14.0' @@ -39,7 +39,7 @@ requirements: - 'bioconductor-genomicranges >=1.32.7,<1.34.0' - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-xml test: commands: @@ -48,5 +48,3 @@ about: home: 'http://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: Artistic-2.0 summary: 'Provide infrastructure to store and access genomewide position-specific scores within R and Bioconductor.' - - diff --git a/recipes/bioconductor-geosubmission/conda_build_config.yaml b/recipes/bioconductor-geosubmission/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-geosubmission/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-geosubmission/meta.yaml b/recipes/bioconductor-geosubmission/meta.yaml index 8e35721b95960..eca6a270fbc16 100644 --- a/recipes/bioconductor-geosubmission/meta.yaml +++ b/recipes/bioconductor-geosubmission/meta.yaml @@ -20,11 +20,11 @@ requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-ggbio/conda_build_config.yaml b/recipes/bioconductor-ggbio/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-ggbio/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-ggbio/meta.yaml b/recipes/bioconductor-ggbio/meta.yaml index 83f7c8eda7986..0718a0b3635fd 100644 --- a/recipes/bioconductor-ggbio/meta.yaml +++ b/recipes/bioconductor-ggbio/meta.yaml @@ -37,7 +37,7 @@ requirements: - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - 'bioconductor-variantannotation >=1.26.1,<1.28.0' - - r-base >=3.5 + - r-base - r-ggally - 'r-ggplot2 >=1.0.0' - r-gridextra @@ -66,7 +66,7 @@ requirements: - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - 'bioconductor-variantannotation >=1.26.1,<1.28.0' - - r-base >=3.5 + - r-base - r-ggally - 'r-ggplot2 >=1.0.0' - r-gridextra diff --git a/recipes/bioconductor-guideseq/conda_build_config.yaml b/recipes/bioconductor-guideseq/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-guideseq/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-guideseq/meta.yaml b/recipes/bioconductor-guideseq/meta.yaml index e654abad505c8..d6f014722aed7 100644 --- a/recipes/bioconductor-guideseq/meta.yaml +++ b/recipes/bioconductor-guideseq/meta.yaml @@ -31,7 +31,7 @@ requirements: - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-rsamtools >=1.32.3,<1.34.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-data.table - r-hash - r-matrixstats @@ -49,7 +49,7 @@ requirements: - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-rsamtools >=1.32.3,<1.34.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-data.table - r-hash - r-matrixstats diff --git a/recipes/bioconductor-harshlight/conda_build_config.yaml b/recipes/bioconductor-harshlight/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-harshlight/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-harshlight/meta.yaml b/recipes/bioconductor-harshlight/meta.yaml index 55c9c40bd70c3..55aced634b1a6 100644 --- a/recipes/bioconductor-harshlight/meta.yaml +++ b/recipes/bioconductor-harshlight/meta.yaml @@ -21,12 +21,12 @@ requirements: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-altcdfenvs >=2.42.0,<2.44.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-altcdfenvs >=2.42.0,<2.44.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base build: - {{ compiler('c') }} - make diff --git a/recipes/bioconductor-hiccompare/conda_build_config.yaml b/recipes/bioconductor-hiccompare/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-hiccompare/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-hiccompare/meta.yaml b/recipes/bioconductor-hiccompare/meta.yaml index 6bbcc0f9761af..3626bdb8852a6 100644 --- a/recipes/bioconductor-hiccompare/meta.yaml +++ b/recipes/bioconductor-hiccompare/meta.yaml @@ -24,7 +24,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-qdnaseq >=1.16.0,<1.18.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-data.table - r-dplyr - r-ggplot2 @@ -40,7 +40,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-qdnaseq >=1.16.0,<1.18.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-data.table - r-dplyr - r-ggplot2 diff --git a/recipes/bioconductor-homo.sapiens/conda_build_config.yaml b/recipes/bioconductor-homo.sapiens/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-homo.sapiens/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-homo.sapiens/meta.yaml b/recipes/bioconductor-homo.sapiens/meta.yaml index dd0547f717ba5..c818fa177a26b 100644 --- a/recipes/bioconductor-homo.sapiens/meta.yaml +++ b/recipes/bioconductor-homo.sapiens/meta.yaml @@ -24,7 +24,7 @@ requirements: - 'bioconductor-org.hs.eg.db >=3.6.0,<3.8.0' - 'bioconductor-organismdbi >=1.22.0,<1.24.0' - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.2,<3.4.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-annotationdbi >=1.42.1,<1.44.0' - 'bioconductor-genomicfeatures >=1.32.2,<1.34.0' @@ -32,7 +32,7 @@ requirements: - 'bioconductor-org.hs.eg.db >=3.6.0,<3.8.0' - 'bioconductor-organismdbi >=1.22.0,<1.24.0' - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.2,<3.4.0' - - r-base >=3.5 + - r-base - wget test: commands: @@ -41,5 +41,3 @@ about: home: 'http://bioconductor.org/packages/{{ bioc }}/data/annotation/html/{{ name }}.html' license: Artistic-2.0 summary: 'Contains the Homo.sapiens object to access data from several related annotation packages.' - - diff --git a/recipes/bioconductor-htqpcr/conda_build_config.yaml b/recipes/bioconductor-htqpcr/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-htqpcr/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-htqpcr/meta.yaml b/recipes/bioconductor-htqpcr/meta.yaml index 3cfc66b536cf5..2aa3be0bd6c60 100644 --- a/recipes/bioconductor-htqpcr/meta.yaml +++ b/recipes/bioconductor-htqpcr/meta.yaml @@ -21,14 +21,14 @@ requirements: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - - r-base >=3.5 + - r-base - r-gplots - r-rcolorbrewer run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - - r-base >=3.5 + - r-base - r-gplots - r-rcolorbrewer test: diff --git a/recipes/bioconductor-imagehts/conda_build_config.yaml b/recipes/bioconductor-imagehts/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-imagehts/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-imagehts/meta.yaml b/recipes/bioconductor-imagehts/meta.yaml index 209b07a2c2d50..6376dfcb80559 100644 --- a/recipes/bioconductor-imagehts/meta.yaml +++ b/recipes/bioconductor-imagehts/meta.yaml @@ -22,7 +22,7 @@ requirements: - 'bioconductor-cellhts2 >=2.44.0,<2.46.0' - 'bioconductor-ebimage >=4.22.1,<4.24.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - - r-base >=3.5 + - r-base - r-e1071 - r-hwriter run: @@ -30,7 +30,7 @@ requirements: - 'bioconductor-cellhts2 >=2.44.0,<2.46.0' - 'bioconductor-ebimage >=4.22.1,<4.24.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - - r-base >=3.5 + - r-base - r-e1071 - r-hwriter test: diff --git a/recipes/bioconductor-interactionset/conda_build_config.yaml b/recipes/bioconductor-interactionset/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-interactionset/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-interactionset/meta.yaml b/recipes/bioconductor-interactionset/meta.yaml index 7d2b4ef833b43..cca74b999fef1 100644 --- a/recipes/bioconductor-interactionset/meta.yaml +++ b/recipes/bioconductor-interactionset/meta.yaml @@ -24,7 +24,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-matrix - r-rcpp run: @@ -34,7 +34,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-matrix - r-rcpp build: diff --git a/recipes/bioconductor-lmgene/conda_build_config.yaml b/recipes/bioconductor-lmgene/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-lmgene/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-lmgene/meta.yaml b/recipes/bioconductor-lmgene/meta.yaml index 0e7944343dfee..d96dfdcd880d5 100644 --- a/recipes/bioconductor-lmgene/meta.yaml +++ b/recipes/bioconductor-lmgene/meta.yaml @@ -21,13 +21,13 @@ requirements: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-multtest >=2.36.0,<2.38.0' - - r-base >=3.5 + - r-base - r-survival run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-multtest >=2.36.0,<2.38.0' - - r-base >=3.5 + - r-base - r-survival test: commands: diff --git a/recipes/bioconductor-logitt/conda_build_config.yaml b/recipes/bioconductor-logitt/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-logitt/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-logitt/meta.yaml b/recipes/bioconductor-logitt/meta.yaml index 775f81afbbb78..ec69b83e50f09 100644 --- a/recipes/bioconductor-logitt/meta.yaml +++ b/recipes/bioconductor-logitt/meta.yaml @@ -19,10 +19,10 @@ build: requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - - r-base >=3.5 + - r-base build: - {{ compiler('c') }} - make diff --git a/recipes/bioconductor-lumi/conda_build_config.yaml b/recipes/bioconductor-lumi/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-lumi/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-lumi/meta.yaml b/recipes/bioconductor-lumi/meta.yaml index cfa316f4d3113..f1a59c3d96245 100644 --- a/recipes/bioconductor-lumi/meta.yaml +++ b/recipes/bioconductor-lumi/meta.yaml @@ -26,7 +26,7 @@ requirements: - 'bioconductor-genomicranges >=1.32.7,<1.34.0' - 'bioconductor-methylumi >=2.26.0,<2.28.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base - r-dbi - r-kernsmooth - r-lattice @@ -43,7 +43,7 @@ requirements: - 'bioconductor-genomicranges >=1.32.7,<1.34.0' - 'bioconductor-methylumi >=2.26.0,<2.28.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base - r-dbi - r-kernsmooth - r-lattice diff --git a/recipes/bioconductor-lvsmirna/conda_build_config.yaml b/recipes/bioconductor-lvsmirna/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-lvsmirna/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-lvsmirna/meta.yaml b/recipes/bioconductor-lvsmirna/meta.yaml index 82cb479c090df..a5d9e847037f6 100644 --- a/recipes/bioconductor-lvsmirna/meta.yaml +++ b/recipes/bioconductor-lvsmirna/meta.yaml @@ -24,7 +24,7 @@ requirements: - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base - r-mass - r-quantreg - r-sparsem @@ -35,7 +35,7 @@ requirements: - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base - r-mass - r-quantreg - r-sparsem diff --git a/recipes/bioconductor-makecdfenv/conda_build_config.yaml b/recipes/bioconductor-makecdfenv/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-makecdfenv/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-makecdfenv/meta.yaml b/recipes/bioconductor-makecdfenv/meta.yaml index bd63878671ae8..b721590f5bd54 100644 --- a/recipes/bioconductor-makecdfenv/meta.yaml +++ b/recipes/bioconductor-makecdfenv/meta.yaml @@ -22,13 +22,13 @@ requirements: - 'bioconductor-affyio >=1.50.0,<1.52.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-affyio >=1.50.0,<1.52.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base build: - {{ compiler('c') }} - automake diff --git a/recipes/bioconductor-mapredictdsc/conda_build_config.yaml b/recipes/bioconductor-mapredictdsc/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-mapredictdsc/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-mapredictdsc/meta.yaml b/recipes/bioconductor-mapredictdsc/meta.yaml index 230e2424a8fb1..c5346a79ff404 100644 --- a/recipes/bioconductor-mapredictdsc/meta.yaml +++ b/recipes/bioconductor-mapredictdsc/meta.yaml @@ -25,7 +25,7 @@ requirements: - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-lungcanceracvssccgeo >=1.16.0,<1.18.0' - 'bioconductor-roc >=1.56.0,<1.58.0' - - r-base >=3.5 + - r-base - r-caret - r-class - r-e1071 @@ -39,7 +39,7 @@ requirements: - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-lungcanceracvssccgeo >=1.16.0,<1.18.0' - 'bioconductor-roc >=1.56.0,<1.58.0' - - r-base >=3.5 + - r-base - r-caret - r-class - r-e1071 diff --git a/recipes/bioconductor-maskbad/conda_build_config.yaml b/recipes/bioconductor-maskbad/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-maskbad/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-maskbad/meta.yaml b/recipes/bioconductor-maskbad/meta.yaml index e51fe11e519c9..802dde7bfbe4e 100644 --- a/recipes/bioconductor-maskbad/meta.yaml +++ b/recipes/bioconductor-maskbad/meta.yaml @@ -20,11 +20,11 @@ requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-gcrma >=2.52.0,<2.54.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-gcrma >=2.52.0,<2.54.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-mast/conda_build_config.yaml b/recipes/bioconductor-mast/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-mast/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-mast/meta.yaml b/recipes/bioconductor-mast/meta.yaml index 861dcb6adb78b..7f5e432a95f82 100644 --- a/recipes/bioconductor-mast/meta.yaml +++ b/recipes/bioconductor-mast/meta.yaml @@ -24,7 +24,7 @@ requirements: - 'bioconductor-singlecellexperiment >=1.2.0,<1.4.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - r-abind - - r-base >=3.5 + - r-base - r-data.table - r-ggplot2 - r-plyr @@ -37,7 +37,7 @@ requirements: - 'bioconductor-singlecellexperiment >=1.2.0,<1.4.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - r-abind - - r-base >=3.5 + - r-base - r-data.table - r-ggplot2 - r-plyr diff --git a/recipes/bioconductor-minimumdistance/conda_build_config.yaml b/recipes/bioconductor-minimumdistance/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-minimumdistance/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-minimumdistance/meta.yaml b/recipes/bioconductor-minimumdistance/meta.yaml index 609d71de44878..2d199601fdeb9 100644 --- a/recipes/bioconductor-minimumdistance/meta.yaml +++ b/recipes/bioconductor-minimumdistance/meta.yaml @@ -28,7 +28,7 @@ requirements: - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - 'bioconductor-vanillaice >=1.42.4,<1.44.0' - - r-base >=3.5 + - r-base - r-data.table - r-ff - r-foreach @@ -45,7 +45,7 @@ requirements: - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - 'bioconductor-vanillaice >=1.42.4,<1.44.0' - - r-base >=3.5 + - r-base - r-data.table - r-ff - r-foreach diff --git a/recipes/bioconductor-mlp/conda_build_config.yaml b/recipes/bioconductor-mlp/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-mlp/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-mlp/meta.yaml b/recipes/bioconductor-mlp/meta.yaml index bd9189e8bc682..4afc56e334fcc 100644 --- a/recipes/bioconductor-mlp/meta.yaml +++ b/recipes/bioconductor-mlp/meta.yaml @@ -20,7 +20,7 @@ requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-annotationdbi >=1.42.1,<1.44.0' - - r-base >=3.5 + - r-base - r-gdata - r-gmodels - r-gplots @@ -29,7 +29,7 @@ requirements: run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-annotationdbi >=1.42.1,<1.44.0' - - r-base >=3.5 + - r-base - r-gdata - r-gmodels - r-gplots diff --git a/recipes/bioconductor-msnbase/conda_build_config.yaml b/recipes/bioconductor-msnbase/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-msnbase/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-msnbase/meta.yaml b/recipes/bioconductor-msnbase/meta.yaml index 0e2a02d947ab4..97d2e3c6c63a8 100644 --- a/recipes/bioconductor-msnbase/meta.yaml +++ b/recipes/bioconductor-msnbase/meta.yaml @@ -31,7 +31,7 @@ requirements: - 'bioconductor-protgenerics >=1.12.0,<1.14.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - - r-base >=3.5 + - r-base - r-digest - r-ggplot2 - r-lattice @@ -55,7 +55,7 @@ requirements: - 'bioconductor-protgenerics >=1.12.0,<1.14.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - - r-base >=3.5 + - r-base - r-digest - r-ggplot2 - r-lattice diff --git a/recipes/bioconductor-multiassayexperiment/conda_build_config.yaml b/recipes/bioconductor-multiassayexperiment/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-multiassayexperiment/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-multiassayexperiment/meta.yaml b/recipes/bioconductor-multiassayexperiment/meta.yaml index de3d64cda4ed2..ee43d23a286cf 100644 --- a/recipes/bioconductor-multiassayexperiment/meta.yaml +++ b/recipes/bioconductor-multiassayexperiment/meta.yaml @@ -24,7 +24,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-tidyr run: - 'bioconductor-biobase >=2.40.0,<2.42.0' @@ -33,7 +33,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-tidyr test: commands: diff --git a/recipes/bioconductor-oligo/conda_build_config.yaml b/recipes/bioconductor-oligo/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-oligo/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-oligo/meta.yaml b/recipes/bioconductor-oligo/meta.yaml index 19ccf2437a196..b48d25885cfd0 100644 --- a/recipes/bioconductor-oligo/meta.yaml +++ b/recipes/bioconductor-oligo/meta.yaml @@ -26,7 +26,7 @@ requirements: - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base - 'r-dbi >=0.3.1' - r-ff - 'r-rsqlite >=1.0.0' @@ -39,7 +39,7 @@ requirements: - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base - 'r-dbi >=0.3.1' - r-ff - 'r-rsqlite >=1.0.0' diff --git a/recipes/bioconductor-oligoclasses/conda_build_config.yaml b/recipes/bioconductor-oligoclasses/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-oligoclasses/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-oligoclasses/meta.yaml b/recipes/bioconductor-oligoclasses/meta.yaml index f728d310b211b..4cf4709a72528 100644 --- a/recipes/bioconductor-oligoclasses/meta.yaml +++ b/recipes/bioconductor-oligoclasses/meta.yaml @@ -27,7 +27,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-dbi - r-ff - r-foreach @@ -42,7 +42,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-dbi - r-ff - r-foreach diff --git a/recipes/bioconductor-organismdbi/conda_build_config.yaml b/recipes/bioconductor-organismdbi/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-organismdbi/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-organismdbi/meta.yaml b/recipes/bioconductor-organismdbi/meta.yaml index 824376c6e9f56..13b11f80a2efc 100644 --- a/recipes/bioconductor-organismdbi/meta.yaml +++ b/recipes/bioconductor-organismdbi/meta.yaml @@ -28,7 +28,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-rbgl >=1.56.0,<1.58.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-dbi run: - 'bioconductor-annotationdbi >=1.42.1,<1.44.0' @@ -41,7 +41,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-rbgl >=1.56.0,<1.58.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-dbi test: commands: diff --git a/recipes/bioconductor-panp/conda_build_config.yaml b/recipes/bioconductor-panp/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-panp/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-panp/meta.yaml b/recipes/bioconductor-panp/meta.yaml index 86b6e82b4ccdf..8189868b695b6 100644 --- a/recipes/bioconductor-panp/meta.yaml +++ b/recipes/bioconductor-panp/meta.yaml @@ -20,11 +20,11 @@ requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-pdinfobuilder/conda_build_config.yaml b/recipes/bioconductor-pdinfobuilder/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-pdinfobuilder/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-pdinfobuilder/meta.yaml b/recipes/bioconductor-pdinfobuilder/meta.yaml index 9ebb991dad5fe..70fbafad106fe 100644 --- a/recipes/bioconductor-pdinfobuilder/meta.yaml +++ b/recipes/bioconductor-pdinfobuilder/meta.yaml @@ -26,7 +26,7 @@ requirements: - 'bioconductor-oligo >=1.44.0,<1.46.0' - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - 'r-dbi >=0.3.1' - 'r-rsqlite >=1.0.0' run: @@ -38,7 +38,7 @@ requirements: - 'bioconductor-oligo >=1.44.0,<1.46.0' - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - 'r-dbi >=0.3.1' - 'r-rsqlite >=1.0.0' build: diff --git a/recipes/bioconductor-peca/conda_build_config.yaml b/recipes/bioconductor-peca/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-peca/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-peca/meta.yaml b/recipes/bioconductor-peca/meta.yaml index ceb87776e8f9c..094c365561e83 100644 --- a/recipes/bioconductor-peca/meta.yaml +++ b/recipes/bioconductor-peca/meta.yaml @@ -25,7 +25,7 @@ requirements: - 'bioconductor-rots >=1.8.0,<1.10.0' - r-aroma.affymetrix - r-aroma.core - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-genefilter >=1.62.0,<1.64.0' @@ -34,7 +34,7 @@ requirements: - 'bioconductor-rots >=1.8.0,<1.10.0' - r-aroma.affymetrix - r-aroma.core - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-phastcons100way.ucsc.hg19/conda_build_config.yaml b/recipes/bioconductor-phastcons100way.ucsc.hg19/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-phastcons100way.ucsc.hg19/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-phastcons100way.ucsc.hg19/meta.yaml b/recipes/bioconductor-phastcons100way.ucsc.hg19/meta.yaml index 7932eaa4c6134..2fd9f058d2491 100644 --- a/recipes/bioconductor-phastcons100way.ucsc.hg19/meta.yaml +++ b/recipes/bioconductor-phastcons100way.ucsc.hg19/meta.yaml @@ -24,7 +24,7 @@ requirements: - 'bioconductor-genomicscores >=1.4.1,<1.6.0' - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-bsgenome >=1.48.0,<1.50.0' - 'bioconductor-genomeinfodb >=1.16.0,<1.18.0' @@ -32,7 +32,7 @@ requirements: - 'bioconductor-genomicscores >=1.4.1,<1.6.0' - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - wget test: commands: @@ -41,5 +41,3 @@ about: home: 'http://bioconductor.org/packages/{{ bioc }}/data/annotation/html/{{ name }}.html' license: Artistic-2.0 summary: 'Store UCSC phastCons conservation scores for the human genome (hg19) calculated from multiple alignments with other 99 vertebrate species.' - - diff --git a/recipes/bioconductor-plier/conda_build_config.yaml b/recipes/bioconductor-plier/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-plier/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-plier/meta.yaml b/recipes/bioconductor-plier/meta.yaml index 26f6c58f7097a..b16f80743bed9 100644 --- a/recipes/bioconductor-plier/meta.yaml +++ b/recipes/bioconductor-plier/meta.yaml @@ -20,11 +20,11 @@ requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-plw/conda_build_config.yaml b/recipes/bioconductor-plw/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-plw/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-plw/meta.yaml b/recipes/bioconductor-plw/meta.yaml index 1ef4e8e650ef7..34369e21fccd8 100644 --- a/recipes/bioconductor-plw/meta.yaml +++ b/recipes/bioconductor-plw/meta.yaml @@ -19,11 +19,11 @@ build: requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - - r-base >=3.5 + - r-base - r-mass run: - 'bioconductor-affy >=1.58.0,<1.60.0' - - r-base >=3.5 + - r-base - r-mass build: - {{ compiler('c') }} diff --git a/recipes/bioconductor-prebs/conda_build_config.yaml b/recipes/bioconductor-prebs/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-prebs/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-prebs/meta.yaml b/recipes/bioconductor-prebs/meta.yaml index 29b94abf76378..68f061c9a6106 100644 --- a/recipes/bioconductor-prebs/meta.yaml +++ b/recipes/bioconductor-prebs/meta.yaml @@ -26,7 +26,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-rpa >=1.36.0,<1.38.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' @@ -36,7 +36,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-rpa >=1.36.0,<1.38.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-proteomicsannotationhubdata/conda_build_config.yaml b/recipes/bioconductor-proteomicsannotationhubdata/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-proteomicsannotationhubdata/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-proteomicsannotationhubdata/meta.yaml b/recipes/bioconductor-proteomicsannotationhubdata/meta.yaml index 89b16ce27d39e..3cf6ee386b48e 100644 --- a/recipes/bioconductor-proteomicsannotationhubdata/meta.yaml +++ b/recipes/bioconductor-proteomicsannotationhubdata/meta.yaml @@ -26,7 +26,7 @@ requirements: - 'bioconductor-genomeinfodb >=1.16.0,<1.18.0' - 'bioconductor-msnbase >=2.6.4,<2.8.0' - 'bioconductor-mzr >=2.17.0,<2.19.0' - - r-base >=3.5 + - r-base - r-rcurl run: - 'bioconductor-annotationhub >=2.12.1,<2.14.0' @@ -37,7 +37,7 @@ requirements: - 'bioconductor-genomeinfodb >=1.16.0,<1.18.0' - 'bioconductor-msnbase >=2.6.4,<2.8.0' - 'bioconductor-mzr >=2.17.0,<2.19.0' - - r-base >=3.5 + - r-base - r-rcurl test: commands: diff --git a/recipes/bioconductor-psygenet2r/conda_build_config.yaml b/recipes/bioconductor-psygenet2r/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-psygenet2r/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-psygenet2r/meta.yaml b/recipes/bioconductor-psygenet2r/meta.yaml index 0883c44215752..f31151eb62bbb 100644 --- a/recipes/bioconductor-psygenet2r/meta.yaml +++ b/recipes/bioconductor-psygenet2r/meta.yaml @@ -24,7 +24,7 @@ requirements: - 'bioconductor-biomart >=2.36.1,<2.38.0' - 'bioconductor-go.db >=3.6.0,<3.8.0' - 'bioconductor-topgo >=2.32.0,<2.34.0' - - r-base >=3.5 + - r-base - r-ggplot2 - r-igraph - r-labeling @@ -38,7 +38,7 @@ requirements: - 'bioconductor-biomart >=2.36.1,<2.38.0' - 'bioconductor-go.db >=3.6.0,<3.8.0' - 'bioconductor-topgo >=2.32.0,<2.34.0' - - r-base >=3.5 + - r-base - r-ggplot2 - r-igraph - r-labeling diff --git a/recipes/bioconductor-puma/conda_build_config.yaml b/recipes/bioconductor-puma/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-puma/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-puma/meta.yaml b/recipes/bioconductor-puma/meta.yaml index 80ac491f26837..8cd1f47d2c82c 100644 --- a/recipes/bioconductor-puma/meta.yaml +++ b/recipes/bioconductor-puma/meta.yaml @@ -23,7 +23,7 @@ requirements: - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-oligo >=1.44.0,<1.46.0' - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base - r-mclust run: - 'bioconductor-affy >=1.58.0,<1.60.0' @@ -31,7 +31,7 @@ requirements: - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-oligo >=1.44.0,<1.46.0' - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base - r-mclust build: - {{ compiler('c') }} diff --git a/recipes/bioconductor-pvac/conda_build_config.yaml b/recipes/bioconductor-pvac/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-pvac/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-pvac/meta.yaml b/recipes/bioconductor-pvac/meta.yaml index 6d7306f59f2fc..4c86922d0bf74 100644 --- a/recipes/bioconductor-pvac/meta.yaml +++ b/recipes/bioconductor-pvac/meta.yaml @@ -20,11 +20,11 @@ requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-pvca/conda_build_config.yaml b/recipes/bioconductor-pvca/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-pvca/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-pvca/meta.yaml b/recipes/bioconductor-pvca/meta.yaml index 09b840847f6a3..d9421a513d469 100644 --- a/recipes/bioconductor-pvca/meta.yaml +++ b/recipes/bioconductor-pvca/meta.yaml @@ -20,13 +20,13 @@ requirements: host: - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - - r-base >=3.5 + - r-base - r-lme4 - r-matrix run: - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - - r-base >=3.5 + - r-base - r-lme4 - r-matrix test: diff --git a/recipes/bioconductor-pwomics/conda_build_config.yaml b/recipes/bioconductor-pwomics/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-pwomics/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-pwomics/meta.yaml b/recipes/bioconductor-pwomics/meta.yaml index 6e0981dfcd45f..3eb315f0d8892 100644 --- a/recipes/bioconductor-pwomics/meta.yaml +++ b/recipes/bioconductor-pwomics/meta.yaml @@ -27,7 +27,7 @@ requirements: - 'bioconductor-graph >=1.58.0,<1.60.0' - 'bioconductor-rbiopaxparser >=2.20.0,<2.22.0' - 'bioconductor-stringdb >=1.20.0,<1.22.0' - - r-base >=3.5 + - r-base - r-data.table - r-gplots - r-igraph @@ -41,7 +41,7 @@ requirements: - 'bioconductor-graph >=1.58.0,<1.60.0' - 'bioconductor-rbiopaxparser >=2.20.0,<2.22.0' - 'bioconductor-stringdb >=1.20.0,<1.22.0' - - r-base >=3.5 + - r-base - r-data.table - r-gplots - r-igraph diff --git a/recipes/bioconductor-qpcrnorm/conda_build_config.yaml b/recipes/bioconductor-qpcrnorm/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-qpcrnorm/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-qpcrnorm/meta.yaml b/recipes/bioconductor-qpcrnorm/meta.yaml index a7ba50552c016..ea4b24554d2b5 100644 --- a/recipes/bioconductor-qpcrnorm/meta.yaml +++ b/recipes/bioconductor-qpcrnorm/meta.yaml @@ -21,12 +21,12 @@ requirements: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-quasr/conda_build_config.yaml b/recipes/bioconductor-quasr/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-quasr/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-quasr/meta.yaml b/recipes/bioconductor-quasr/meta.yaml index 8f8c606230e48..8dd862752ddbd 100644 --- a/recipes/bioconductor-quasr/meta.yaml +++ b/recipes/bioconductor-quasr/meta.yaml @@ -36,7 +36,7 @@ requirements: - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-shortread >=1.38.0,<1.40.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' @@ -56,7 +56,7 @@ requirements: - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-shortread >=1.38.0,<1.40.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base build: - {{ compiler('c') }} - {{ compiler('cxx') }} diff --git a/recipes/bioconductor-rarevariantvis/conda_build_config.yaml b/recipes/bioconductor-rarevariantvis/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-rarevariantvis/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-rarevariantvis/meta.yaml b/recipes/bioconductor-rarevariantvis/meta.yaml index 508b74529df51..200920625fac0 100644 --- a/recipes/bioconductor-rarevariantvis/meta.yaml +++ b/recipes/bioconductor-rarevariantvis/meta.yaml @@ -31,7 +31,7 @@ requirements: - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.2,<3.4.0' - 'bioconductor-variantannotation >=1.26.1,<1.28.0' - - r-base >=3.5 + - r-base - r-googlevis - r-gtools run: @@ -48,7 +48,7 @@ requirements: - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.2,<3.4.0' - 'bioconductor-variantannotation >=1.26.1,<1.28.0' - - r-base >=3.5 + - r-base - r-googlevis - r-gtools test: diff --git a/recipes/bioconductor-rcgh/conda_build_config.yaml b/recipes/bioconductor-rcgh/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-rcgh/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-rcgh/meta.yaml b/recipes/bioconductor-rcgh/meta.yaml index f0cc23c6d2a00..9e835b5de5e68 100644 --- a/recipes/bioconductor-rcgh/meta.yaml +++ b/recipes/bioconductor-rcgh/meta.yaml @@ -31,7 +31,7 @@ requirements: - 'bioconductor-txdb.hsapiens.ucsc.hg18.knowngene >=3.2.2,<3.4.0' - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.2,<3.4.0' - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.4.0,<3.6.0' - - r-base >=3.5 + - r-base - r-ggplot2 - r-lattice - r-mclust @@ -51,7 +51,7 @@ requirements: - 'bioconductor-txdb.hsapiens.ucsc.hg18.knowngene >=3.2.2,<3.4.0' - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.2,<3.4.0' - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.4.0,<3.6.0' - - r-base >=3.5 + - r-base - r-ggplot2 - r-lattice - r-mclust diff --git a/recipes/bioconductor-readqpcr/conda_build_config.yaml b/recipes/bioconductor-readqpcr/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-readqpcr/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-readqpcr/meta.yaml b/recipes/bioconductor-readqpcr/meta.yaml index 63a2291bfbb64..360ed34443308 100644 --- a/recipes/bioconductor-readqpcr/meta.yaml +++ b/recipes/bioconductor-readqpcr/meta.yaml @@ -20,11 +20,11 @@ requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-refnet/conda_build_config.yaml b/recipes/bioconductor-refnet/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-refnet/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-refnet/meta.yaml b/recipes/bioconductor-refnet/meta.yaml index defc4d7aa52eb..20bd8634948b6 100644 --- a/recipes/bioconductor-refnet/meta.yaml +++ b/recipes/bioconductor-refnet/meta.yaml @@ -22,7 +22,7 @@ requirements: - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-psicquic >=1.18.1,<1.20.0' - - r-base >=3.5 + - r-base - r-rcurl - r-shiny run: @@ -30,7 +30,7 @@ requirements: - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-psicquic >=1.18.1,<1.20.0' - - r-base >=3.5 + - r-base - r-rcurl - r-shiny test: diff --git a/recipes/bioconductor-refplus/conda_build_config.yaml b/recipes/bioconductor-refplus/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-refplus/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-refplus/meta.yaml b/recipes/bioconductor-refplus/meta.yaml index cdbeaeb4c5fdf..b56a45e6a7af6 100644 --- a/recipes/bioconductor-refplus/meta.yaml +++ b/recipes/bioconductor-refplus/meta.yaml @@ -22,13 +22,13 @@ requirements: - 'bioconductor-affyplm >=1.56.0,<1.58.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-affyplm >=1.56.0,<1.58.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-ringo/conda_build_config.yaml b/recipes/bioconductor-ringo/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-ringo/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-ringo/meta.yaml b/recipes/bioconductor-ringo/meta.yaml index d20b4865df976..dae378b386dd1 100644 --- a/recipes/bioconductor-ringo/meta.yaml +++ b/recipes/bioconductor-ringo/meta.yaml @@ -23,7 +23,7 @@ requirements: - 'bioconductor-genefilter >=1.62.0,<1.64.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - - r-base >=3.5 + - r-base - r-lattice - r-matrix - r-rcolorbrewer @@ -33,7 +33,7 @@ requirements: - 'bioconductor-genefilter >=1.62.0,<1.64.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - - r-base >=3.5 + - r-base - r-lattice - r-matrix - r-rcolorbrewer diff --git a/recipes/bioconductor-risa/conda_build_config.yaml b/recipes/bioconductor-risa/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-risa/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-risa/meta.yaml b/recipes/bioconductor-risa/meta.yaml index 5ab619bccfcf2..b2097996a8790 100644 --- a/recipes/bioconductor-risa/meta.yaml +++ b/recipes/bioconductor-risa/meta.yaml @@ -22,14 +22,14 @@ requirements: - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-biocviews >=1.48.3,<1.50.0' - 'bioconductor-xcms >=3.2.0,<3.4.0' - - r-base >=3.5 + - r-base - 'r-rcpp >=0.9.13' run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-biocviews >=1.48.3,<1.50.0' - 'bioconductor-xcms >=3.2.0,<3.4.0' - - r-base >=3.5 + - r-base - 'r-rcpp >=0.9.13' build: - {{ compiler('c') }} diff --git a/recipes/bioconductor-rnits/conda_build_config.yaml b/recipes/bioconductor-rnits/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-rnits/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-rnits/meta.yaml b/recipes/bioconductor-rnits/meta.yaml index 786c05e71bf88..1d552efcec1cd 100644 --- a/recipes/bioconductor-rnits/meta.yaml +++ b/recipes/bioconductor-rnits/meta.yaml @@ -23,7 +23,7 @@ requirements: - 'bioconductor-impute >=1.54.0,<1.56.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-qvalue >=2.12.0,<2.14.0' - - r-base >=3.5 + - r-base - r-boot - r-ggplot2 - r-reshape2 @@ -33,7 +33,7 @@ requirements: - 'bioconductor-impute >=1.54.0,<1.56.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-qvalue >=2.12.0,<2.14.0' - - r-base >=3.5 + - r-base - r-boot - r-ggplot2 - r-reshape2 diff --git a/recipes/bioconductor-rpa/conda_build_config.yaml b/recipes/bioconductor-rpa/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-rpa/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-rpa/meta.yaml b/recipes/bioconductor-rpa/meta.yaml index 4691e7a542cfb..6d53f98a80edf 100644 --- a/recipes/bioconductor-rpa/meta.yaml +++ b/recipes/bioconductor-rpa/meta.yaml @@ -21,12 +21,12 @@ requirements: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' - 'bioconductor-phyloseq >=1.24.2,<1.26.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' - 'bioconductor-phyloseq >=1.24.2,<1.26.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-sc3/conda_build_config.yaml b/recipes/bioconductor-sc3/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-sc3/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-sc3/meta.yaml b/recipes/bioconductor-sc3/meta.yaml index ff393ec27db5c..c675756455ffa 100644 --- a/recipes/bioconductor-sc3/meta.yaml +++ b/recipes/bioconductor-sc3/meta.yaml @@ -22,7 +22,7 @@ requirements: - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-singlecellexperiment >=1.2.0,<1.4.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-cluster - r-doparallel - r-dorng @@ -42,7 +42,7 @@ requirements: - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-singlecellexperiment >=1.2.0,<1.4.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-cluster - r-doparallel - r-dorng diff --git a/recipes/bioconductor-scan.upc/conda_build_config.yaml b/recipes/bioconductor-scan.upc/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-scan.upc/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-scan.upc/meta.yaml b/recipes/bioconductor-scan.upc/meta.yaml index 526b6e3663e54..46eb80a532853 100644 --- a/recipes/bioconductor-scan.upc/meta.yaml +++ b/recipes/bioconductor-scan.upc/meta.yaml @@ -26,7 +26,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-oligo >=1.44.0,<1.46.0' - 'bioconductor-sva >=3.28.0,<3.30.0' - - r-base >=3.5 + - r-base - r-foreach - r-mass run: @@ -38,7 +38,7 @@ requirements: - 'bioconductor-iranges >=2.14.12,<2.16.0' - 'bioconductor-oligo >=1.44.0,<1.46.0' - 'bioconductor-sva >=3.28.0,<3.30.0' - - r-base >=3.5 + - r-base - r-foreach - r-mass test: diff --git a/recipes/bioconductor-scater/conda_build_config.yaml b/recipes/bioconductor-scater/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-scater/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-scater/meta.yaml b/recipes/bioconductor-scater/meta.yaml index 0d4acb4a845ec..f7baac2012b38 100644 --- a/recipes/bioconductor-scater/meta.yaml +++ b/recipes/bioconductor-scater/meta.yaml @@ -31,7 +31,7 @@ requirements: - 'bioconductor-singlecellexperiment >=1.2.0,<1.4.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - 'bioconductor-tximport >=1.8.0,<1.10.0' - - r-base >=3.5 + - r-base - r-data.table - r-dplyr - r-ggbeeswarm @@ -58,7 +58,7 @@ requirements: - 'bioconductor-singlecellexperiment >=1.2.0,<1.4.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - 'bioconductor-tximport >=1.8.0,<1.10.0' - - r-base >=3.5 + - r-base - r-data.table - r-dplyr - r-ggbeeswarm diff --git a/recipes/bioconductor-scnorm/conda_build_config.yaml b/recipes/bioconductor-scnorm/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-scnorm/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-scnorm/meta.yaml b/recipes/bioconductor-scnorm/meta.yaml index 0620ba33ff684..0ba12d20c39d8 100644 --- a/recipes/bioconductor-scnorm/meta.yaml +++ b/recipes/bioconductor-scnorm/meta.yaml @@ -16,13 +16,14 @@ build: rpaths: - lib/R/lib/ - lib/ +# note the conda_build_config.yaml requirements: host: - 'bioconductor-biocparallel >=1.14.2,<1.16.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-singlecellexperiment >=1.2.0,<1.4.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-cluster - r-data.table - r-forcats @@ -34,7 +35,7 @@ requirements: - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-singlecellexperiment >=1.2.0,<1.4.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-cluster - r-data.table - r-forcats diff --git a/recipes/bioconductor-scran/conda_build_config.yaml b/recipes/bioconductor-scran/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-scran/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-scran/meta.yaml b/recipes/bioconductor-scran/meta.yaml index 139cbc82e2439..8b6b93b8cb024 100644 --- a/recipes/bioconductor-scran/meta.yaml +++ b/recipes/bioconductor-scran/meta.yaml @@ -30,7 +30,7 @@ requirements: - 'bioconductor-scater >=1.8.4,<1.10.0' - 'bioconductor-singlecellexperiment >=1.2.0,<1.4.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-dt - r-dynamictreecut - r-fnn @@ -54,7 +54,7 @@ requirements: - 'bioconductor-scater >=1.8.4,<1.10.0' - 'bioconductor-singlecellexperiment >=1.2.0,<1.4.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-dt - r-dynamictreecut - r-fnn diff --git a/recipes/bioconductor-simpleaffy/conda_build_config.yaml b/recipes/bioconductor-simpleaffy/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-simpleaffy/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-simpleaffy/meta.yaml b/recipes/bioconductor-simpleaffy/meta.yaml index 7a877c611cc69..928eccd768d38 100644 --- a/recipes/bioconductor-simpleaffy/meta.yaml +++ b/recipes/bioconductor-simpleaffy/meta.yaml @@ -23,14 +23,14 @@ requirements: - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' - 'bioconductor-gcrma >=2.52.0,<2.54.0' - 'bioconductor-genefilter >=1.62.0,<1.64.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' - 'bioconductor-gcrma >=2.52.0,<2.54.0' - 'bioconductor-genefilter >=1.62.0,<1.64.0' - - r-base >=3.5 + - r-base build: - {{ compiler('c') }} - make diff --git a/recipes/bioconductor-singlecellexperiment/conda_build_config.yaml b/recipes/bioconductor-singlecellexperiment/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-singlecellexperiment/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-singlecellexperiment/meta.yaml b/recipes/bioconductor-singlecellexperiment/meta.yaml index e080fb9bec8d7..b5e9632f7df0e 100644 --- a/recipes/bioconductor-singlecellexperiment/meta.yaml +++ b/recipes/bioconductor-singlecellexperiment/meta.yaml @@ -21,12 +21,12 @@ requirements: - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' @@ -34,5 +34,3 @@ about: home: 'http://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: GPL-3 summary: 'Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.' - - diff --git a/recipes/bioconductor-snpchip/conda_build_config.yaml b/recipes/bioconductor-snpchip/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-snpchip/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-snpchip/meta.yaml b/recipes/bioconductor-snpchip/meta.yaml index d1efc893fdb09..0e9602ec9a597 100644 --- a/recipes/bioconductor-snpchip/meta.yaml +++ b/recipes/bioconductor-snpchip/meta.yaml @@ -25,7 +25,7 @@ requirements: - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-foreach - r-lattice run: @@ -36,7 +36,7 @@ requirements: - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-foreach - r-lattice test: diff --git a/recipes/bioconductor-sscore/conda_build_config.yaml b/recipes/bioconductor-sscore/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-sscore/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-sscore/meta.yaml b/recipes/bioconductor-sscore/meta.yaml index 7d1d060311df9..907bc53922241 100644 --- a/recipes/bioconductor-sscore/meta.yaml +++ b/recipes/bioconductor-sscore/meta.yaml @@ -20,11 +20,11 @@ requirements: host: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-affyio >=1.50.0,<1.52.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-affyio >=1.50.0,<1.52.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/bioconductor-starr/conda_build_config.yaml b/recipes/bioconductor-starr/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-starr/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-starr/meta.yaml b/recipes/bioconductor-starr/meta.yaml index 761a6a22ecd09..24007b43c89f6 100644 --- a/recipes/bioconductor-starr/meta.yaml +++ b/recipes/bioconductor-starr/meta.yaml @@ -22,7 +22,7 @@ requirements: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-ringo >=1.44.0,<1.46.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base - r-mass - r-pspline run: @@ -30,7 +30,7 @@ requirements: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-ringo >=1.44.0,<1.46.0' - 'bioconductor-zlibbioc >=1.26.0,<1.28.0' - - r-base >=3.5 + - r-base - r-mass - r-pspline build: diff --git a/recipes/bioconductor-stategra/conda_build_config.yaml b/recipes/bioconductor-stategra/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-stategra/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-stategra/meta.yaml b/recipes/bioconductor-stategra/meta.yaml index 802e28e564422..b437decc66f9f 100644 --- a/recipes/bioconductor-stategra/meta.yaml +++ b/recipes/bioconductor-stategra/meta.yaml @@ -22,7 +22,7 @@ requirements: - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-edger >=3.22.4,<3.24.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - - r-base >=3.5 + - r-base - r-calibrate - r-foreach - r-ggplot2 @@ -34,7 +34,7 @@ requirements: - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-edger >=3.22.4,<3.24.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - - r-base >=3.5 + - r-base - r-calibrate - r-foreach - r-ggplot2 diff --git a/recipes/bioconductor-switchde/conda_build_config.yaml b/recipes/bioconductor-switchde/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-switchde/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-switchde/meta.yaml b/recipes/bioconductor-switchde/meta.yaml index 27cae263b5f51..d78ef5dcda6de 100644 --- a/recipes/bioconductor-switchde/meta.yaml +++ b/recipes/bioconductor-switchde/meta.yaml @@ -20,13 +20,13 @@ requirements: host: - 'bioconductor-singlecellexperiment >=1.2.0,<1.4.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-dplyr - r-ggplot2 run: - 'bioconductor-singlecellexperiment >=1.2.0,<1.4.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-dplyr - r-ggplot2 test: diff --git a/recipes/bioconductor-trackviewer/conda_build_config.yaml b/recipes/bioconductor-trackviewer/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-trackviewer/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-trackviewer/meta.yaml b/recipes/bioconductor-trackviewer/meta.yaml index 09e2746944d1e..d8e7b4674ace4 100644 --- a/recipes/bioconductor-trackviewer/meta.yaml +++ b/recipes/bioconductor-trackviewer/meta.yaml @@ -32,7 +32,7 @@ requirements: - 'bioconductor-rsamtools >=1.32.3,<1.34.0' - 'bioconductor-rtracklayer >=1.40.6,<1.42.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-grimport - r-htmlwidgets - r-plotrix @@ -52,7 +52,7 @@ requirements: - 'bioconductor-rsamtools >=1.32.3,<1.34.0' - 'bioconductor-rtracklayer >=1.40.6,<1.42.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - - r-base >=3.5 + - r-base - r-grimport - r-htmlwidgets - r-plotrix diff --git a/recipes/bioconductor-turbonorm/conda_build_config.yaml b/recipes/bioconductor-turbonorm/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-turbonorm/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-turbonorm/meta.yaml b/recipes/bioconductor-turbonorm/meta.yaml index 41db8186d756c..087840bcee23e 100644 --- a/recipes/bioconductor-turbonorm/meta.yaml +++ b/recipes/bioconductor-turbonorm/meta.yaml @@ -22,14 +22,14 @@ requirements: - 'bioconductor-convert >=1.56.0,<1.58.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-marray >=1.58.0,<1.60.0' - - r-base >=3.5 + - r-base - r-lattice run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-convert >=1.56.0,<1.58.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - 'bioconductor-marray >=1.58.0,<1.60.0' - - r-base >=3.5 + - r-base - r-lattice build: - {{ compiler('c') }} diff --git a/recipes/bioconductor-vanillaice/conda_build_config.yaml b/recipes/bioconductor-vanillaice/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-vanillaice/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-vanillaice/meta.yaml b/recipes/bioconductor-vanillaice/meta.yaml index e63367572f7a1..d6c6e57f8bf1d 100644 --- a/recipes/bioconductor-vanillaice/meta.yaml +++ b/recipes/bioconductor-vanillaice/meta.yaml @@ -28,7 +28,7 @@ requirements: - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-data.table - r-foreach - r-lattice @@ -44,7 +44,7 @@ requirements: - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-s4vectors >=0.18.3,<0.20.0' - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - - r-base >=3.5 + - r-base - r-data.table - r-foreach - r-lattice diff --git a/recipes/bioconductor-variantfiltering/conda_build_config.yaml b/recipes/bioconductor-variantfiltering/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-variantfiltering/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-variantfiltering/meta.yaml b/recipes/bioconductor-variantfiltering/meta.yaml index edaac3b06e5fb..891040a80c2d2 100644 --- a/recipes/bioconductor-variantfiltering/meta.yaml +++ b/recipes/bioconductor-variantfiltering/meta.yaml @@ -37,7 +37,7 @@ requirements: - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - 'bioconductor-variantannotation >=1.26.1,<1.28.0' - 'bioconductor-xvector >=0.20.0,<0.22.0' - - r-base >=3.5 + - r-base - r-dt - r-shiny - r-shinyjs @@ -63,7 +63,7 @@ requirements: - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' - 'bioconductor-variantannotation >=1.26.1,<1.28.0' - 'bioconductor-xvector >=0.20.0,<0.22.0' - - r-base >=3.5 + - r-base - r-dt - r-shiny - r-shinyjs diff --git a/recipes/bioconductor-vsn/conda_build_config.yaml b/recipes/bioconductor-vsn/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-vsn/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-vsn/meta.yaml b/recipes/bioconductor-vsn/meta.yaml index c0619cd303624..1b40a9a5e68cb 100644 --- a/recipes/bioconductor-vsn/meta.yaml +++ b/recipes/bioconductor-vsn/meta.yaml @@ -21,14 +21,14 @@ requirements: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - - r-base >=3.5 + - r-base - r-ggplot2 - r-lattice run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-biobase >=2.40.0,<2.42.0' - 'bioconductor-limma >=3.36.5,<3.38.0' - - r-base >=3.5 + - r-base - r-ggplot2 - r-lattice build: diff --git a/recipes/bioconductor-wavetiling/conda_build_config.yaml b/recipes/bioconductor-wavetiling/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-wavetiling/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-wavetiling/meta.yaml b/recipes/bioconductor-wavetiling/meta.yaml index 0e0808d810bd5..a136d9d3c44f3 100644 --- a/recipes/bioconductor-wavetiling/meta.yaml +++ b/recipes/bioconductor-wavetiling/meta.yaml @@ -27,7 +27,7 @@ requirements: - 'bioconductor-oligo >=1.44.0,<1.46.0' - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base - r-waveslim run: - 'bioconductor-affy >=1.58.0,<1.60.0' @@ -39,7 +39,7 @@ requirements: - 'bioconductor-oligo >=1.44.0,<1.46.0' - 'bioconductor-oligoclasses >=1.42.0,<1.44.0' - 'bioconductor-preprocesscore >=1.42.0,<1.44.0' - - r-base >=3.5 + - r-base - r-waveslim build: - {{ compiler('c') }} diff --git a/recipes/bioconductor-webbioc/conda_build_config.yaml b/recipes/bioconductor-webbioc/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-webbioc/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-webbioc/meta.yaml b/recipes/bioconductor-webbioc/meta.yaml index e1c59ad369052..593165c34993e 100644 --- a/recipes/bioconductor-webbioc/meta.yaml +++ b/recipes/bioconductor-webbioc/meta.yaml @@ -26,7 +26,7 @@ requirements: - 'bioconductor-multtest >=2.36.0,<2.38.0' - 'bioconductor-qvalue >=2.12.0,<2.14.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - - r-base >=3.5 + - r-base run: - 'bioconductor-affy >=1.58.0,<1.60.0' - 'bioconductor-annaffy >=1.52.0,<1.54.0' @@ -36,7 +36,7 @@ requirements: - 'bioconductor-multtest >=2.36.0,<2.38.0' - 'bioconductor-qvalue >=2.12.0,<2.14.0' - 'bioconductor-vsn >=3.48.1,<3.50.0' - - r-base >=3.5 + - r-base test: commands: - '$R -e "library(''{{ name }}'')"' From 1fe9aea01d5f59b5116e4e2d8e3bd818bceaf3a9 Mon Sep 17 00:00:00 2001 From: dpryan79 Date: Sat, 20 Oct 2018 22:31:41 +0200 Subject: [PATCH 2/5] blacklist r-phangorn --- build-fail-blacklist | 1 + 1 file changed, 1 insertion(+) diff --git a/build-fail-blacklist b/build-fail-blacklist index 65716c0a8c559..99e03a2fdd90f 100644 --- a/build-fail-blacklist +++ b/build-fail-blacklist @@ -105,6 +105,7 @@ recipes/r-mlgt recipes/r-mqtl recipes/r-pamr recipes/r-patpro +recipes/r-phangorn recipes/r-pinfsc50 recipes/r-plasmidprofiler recipes/r-precrec From 7b10ebeb29d2d4b930257b963eb12019bc7bec5d Mon Sep 17 00:00:00 2001 From: dpryan79 Date: Sat, 20 Oct 2018 23:18:14 +0200 Subject: [PATCH 3/5] Update variancepartition --- recipes/bioconductor-variancepartition/meta.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/recipes/bioconductor-variancepartition/meta.yaml b/recipes/bioconductor-variancepartition/meta.yaml index 9c1e070a1fd6e..bc8a8f6312176 100644 --- a/recipes/bioconductor-variancepartition/meta.yaml +++ b/recipes/bioconductor-variancepartition/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.10.1" %} +{% set version = "1.10.4" %} {% set name = "variancePartition" %} {% set bioc = "3.7" %} @@ -10,7 +10,7 @@ source: - 'http://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - sha256: 72d8386a63273693c27139a56e1a90a52b45ab4912cebb3456758166c84cf289 + sha256: 24a6bc59c65bc97d0818010c489bd16eb7c746d9c45f0c53b90e581e9fbc5b2f build: number: 0 rpaths: From 2da988f9607fb213bb656b2a4544aaf61708d44f Mon Sep 17 00:00:00 2001 From: dpryan79 Date: Sat, 20 Oct 2018 23:29:55 +0200 Subject: [PATCH 4/5] R 3.5 for packages requiring singlecellexperiment --- recipes/bioconductor-scater-scripts/conda_build_config.yaml | 2 ++ recipes/bioconductor-scpipe/conda_build_config.yaml | 2 ++ .../conda_build_config.yaml | 2 ++ recipes/bioconductor-splatter/conda_build_config.yaml | 2 ++ recipes/bioconductor-zinbwave/conda_build_config.yaml | 2 ++ 5 files changed, 10 insertions(+) create mode 100644 recipes/bioconductor-scater-scripts/conda_build_config.yaml create mode 100644 recipes/bioconductor-scpipe/conda_build_config.yaml create mode 100644 recipes/bioconductor-singlecellexperiment-scripts/conda_build_config.yaml create mode 100644 recipes/bioconductor-splatter/conda_build_config.yaml create mode 100644 recipes/bioconductor-zinbwave/conda_build_config.yaml diff --git a/recipes/bioconductor-scater-scripts/conda_build_config.yaml b/recipes/bioconductor-scater-scripts/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-scater-scripts/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-scpipe/conda_build_config.yaml b/recipes/bioconductor-scpipe/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-scpipe/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-singlecellexperiment-scripts/conda_build_config.yaml b/recipes/bioconductor-singlecellexperiment-scripts/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-singlecellexperiment-scripts/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-splatter/conda_build_config.yaml b/recipes/bioconductor-splatter/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-splatter/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-zinbwave/conda_build_config.yaml b/recipes/bioconductor-zinbwave/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-zinbwave/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 From 5192623ed1fcf4871c6b445d6a96561be1370e0b Mon Sep 17 00:00:00 2001 From: dpryan79 Date: Sun, 21 Oct 2018 10:31:31 +0200 Subject: [PATCH 5/5] Update a few packages --- recipes/bioconductor-graphite/meta.yaml | 4 ++-- recipes/bioconductor-org.dm.eg.db/meta.yaml | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/recipes/bioconductor-graphite/meta.yaml b/recipes/bioconductor-graphite/meta.yaml index 8904030b1f9e1..a5aa5cf05f400 100644 --- a/recipes/bioconductor-graphite/meta.yaml +++ b/recipes/bioconductor-graphite/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.26.1" %} +{% set version = "1.26.3" %} {% set name = "graphite" %} {% set bioc = "3.7" %} @@ -10,7 +10,7 @@ source: - 'http://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' - sha256: 571a92944b255a6236843f9ed1a1e5c29936216922975cb424f68a2361c9c94e + sha256: a6a62e225b31c37082624f90e15d1da30323fba35e6bef5b8c7e4f0ce342f2a0 build: number: 0 rpaths: diff --git a/recipes/bioconductor-org.dm.eg.db/meta.yaml b/recipes/bioconductor-org.dm.eg.db/meta.yaml index 24576710f01cb..3a1fe2a664a7a 100644 --- a/recipes/bioconductor-org.dm.eg.db/meta.yaml +++ b/recipes/bioconductor-org.dm.eg.db/meta.yaml @@ -7,7 +7,7 @@ package: version: '{{ version }}' source: url: - - 'http://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz' + - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' sha256: fd83e931a4921b5171b9ad4445eac1c3c8166eaa63dd0c16ed8185751ce2927e