From 40b2c80b47bda34074d604660b8ff2d920a535ed Mon Sep 17 00:00:00 2001
From: "Robert A. Petit III" <robbie.petit@gmail.com>
Date: Mon, 22 Oct 2018 14:06:55 -0400
Subject: [PATCH 1/3] Add vcf-annotator recipe

---
 recipes/vcf-annotator/build.sh  |  6 ++++++
 recipes/vcf-annotator/meta.yaml | 36 +++++++++++++++++++++++++++++++++
 2 files changed, 42 insertions(+)
 create mode 100644 recipes/vcf-annotator/build.sh
 create mode 100644 recipes/vcf-annotator/meta.yaml

diff --git a/recipes/vcf-annotator/build.sh b/recipes/vcf-annotator/build.sh
new file mode 100644
index 0000000000000..86551f81f1966
--- /dev/null
+++ b/recipes/vcf-annotator/build.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+mkdir -p $PREFIX/bin
+pip install PyVCF==0.6.8
+chmod 755 vcf-annotator.py
+cp -f vcf-annotator.py $PREFIX/bin/vcf-annotator
diff --git a/recipes/vcf-annotator/meta.yaml b/recipes/vcf-annotator/meta.yaml
new file mode 100644
index 0000000000000..da003adffbe9a
--- /dev/null
+++ b/recipes/vcf-annotator/meta.yaml
@@ -0,0 +1,36 @@
+{% set name="vcf-annotator" %}
+{% set version = "0.5" %}
+{% set sha256 = "48e9a0103b4c390bb59e357da9b0316843e5c543d9a9e1488e054982d462c6ca" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/rpetit3/vcf-annotator/archive/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 1
+  skip: True  # [py27]
+
+requirements:
+  build:
+    - python
+    - pip
+    - biopython >=1.70
+  run:
+    - python
+    - biopython >=1.70
+
+test:
+  commands:
+    - vcf-annotator
+    - vcf-annotator --version
+    - vcf-annotator -h
+
+about:
+  home: https://github.com/rpetit3/vcf-annotator
+  license: MIT
+  license_file: LICENSE
+  summary: Use the reference GenBank file to add biological annotations to the variant calls in a VCF.

From e9d1b559143b8b1f65854a1631678eca9c6c0495 Mon Sep 17 00:00:00 2001
From: "Robert A. Petit III" <robbie.petit@gmail.com>
Date: Tue, 23 Oct 2018 11:31:44 -0400
Subject: [PATCH 2/3] added pyvcf dependency

---
 recipes/vcf-annotator/build.sh  | 1 -
 recipes/vcf-annotator/meta.yaml | 6 ++++--
 2 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/recipes/vcf-annotator/build.sh b/recipes/vcf-annotator/build.sh
index 86551f81f1966..4633cacf51b67 100644
--- a/recipes/vcf-annotator/build.sh
+++ b/recipes/vcf-annotator/build.sh
@@ -1,6 +1,5 @@
 #!/bin/bash
 
 mkdir -p $PREFIX/bin
-pip install PyVCF==0.6.8
 chmod 755 vcf-annotator.py
 cp -f vcf-annotator.py $PREFIX/bin/vcf-annotator
diff --git a/recipes/vcf-annotator/meta.yaml b/recipes/vcf-annotator/meta.yaml
index da003adffbe9a..5ccf16ccf721a 100644
--- a/recipes/vcf-annotator/meta.yaml
+++ b/recipes/vcf-annotator/meta.yaml
@@ -18,10 +18,12 @@ requirements:
   build:
     - python
     - pip
-    - biopython >=1.70
+    - biopython
+    - pyvcf
   run:
     - python
-    - biopython >=1.70
+    - biopython
+    - pyvcf
 
 test:
   commands:

From 32165f3522f5c3e24479b8ce7ff8643967cce6d2 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andreas=20Sj=C3=B6din?= <andreas.sjodin@gmail.com>
Date: Fri, 26 Oct 2018 10:35:24 +0200
Subject: [PATCH 3/3] Update meta.yaml

---
 recipes/vcf-annotator/meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/recipes/vcf-annotator/meta.yaml b/recipes/vcf-annotator/meta.yaml
index 5ccf16ccf721a..961b1c4fbd38a 100644
--- a/recipes/vcf-annotator/meta.yaml
+++ b/recipes/vcf-annotator/meta.yaml
@@ -11,11 +11,11 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 0
   skip: True  # [py27]
 
 requirements:
-  build:
+  host:
     - python
     - pip
     - biopython