From 7025c473afacec71d1bf13d610231008ef0d1a07 Mon Sep 17 00:00:00 2001 From: Kirill Bessonov Date: Mon, 19 Nov 2018 14:23:06 -0500 Subject: [PATCH 1/6] Updated to version 1.4.9 --- recipes/mob_suite/meta.yaml | 41 +++++++++++++++++++++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 recipes/mob_suite/meta.yaml diff --git a/recipes/mob_suite/meta.yaml b/recipes/mob_suite/meta.yaml new file mode 100644 index 0000000000000..1e662eadafa8c --- /dev/null +++ b/recipes/mob_suite/meta.yaml @@ -0,0 +1,41 @@ +{% set version = "1.4.9" %} + +package: + name: mob_suite + version: {{ version }} + +build: + number: 1 + skip: True # [not py36] + script: python -m pip install --no-deps --ignore-installed . + +source: + url: https://github.com/phac-nml/mob-suite/archive/{{ version }}.tar.gz + sha256: 8bb2442737a11fc2c6b45c6a371b05ccb2defa6b57a77150aa141795367acd0c + +requirements: + host: + - python + - pip + - setuptools + run: + - python + - pycurl >=7.43 + - scipy >=1.1 + - numpy >=1.11 + - biopython >=1.70 + - pandas >=0.22.0 + - pytables >=3.3 + - blast + - mash + - circlator + +test: + commands: + - "mob_typer -h" + - "mob_recon -h" + +about: + home: https://github.com/phac-nml/mob-suite + license: Apache License, Version 2.0 + summary: 'This package MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies. The MOB-suite is designed to be a modular set of tools for the typing and reconstruction of plasmid sequences from WGS assemblies.' From b1ae8746654c8ca80a667a630817beed505b5c90 Mon Sep 17 00:00:00 2001 From: Kirill Bessonov Date: Mon, 26 Nov 2018 14:48:37 -0500 Subject: [PATCH 2/6] Downgraded to python >= 3.4 to accomodate lowandrew request --- recipes/mob_suite/meta.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/recipes/mob_suite/meta.yaml b/recipes/mob_suite/meta.yaml index 1e662eadafa8c..8ef92a3135a6d 100644 --- a/recipes/mob_suite/meta.yaml +++ b/recipes/mob_suite/meta.yaml @@ -15,11 +15,11 @@ source: requirements: host: - - python + - python >=3.4 - pip - setuptools run: - - python + - python >=3.4 - pycurl >=7.43 - scipy >=1.1 - numpy >=1.11 From 32a191f2909bb092fd7a577a3fe9bdbf5beb9b19 Mon Sep 17 00:00:00 2001 From: Kirill Bessonov Date: Tue, 27 Nov 2018 14:22:29 -0500 Subject: [PATCH 3/6] new build --- recipes/mob_suite/meta.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/recipes/mob_suite/meta.yaml b/recipes/mob_suite/meta.yaml index ed8b0b7adbca8..d825423446b1a 100644 --- a/recipes/mob_suite/meta.yaml +++ b/recipes/mob_suite/meta.yaml @@ -6,7 +6,7 @@ package: build: number: 1 - skip: True # [not py36] + skip: True # [py27] script: python -m pip install --no-deps --ignore-installed . source: From 58abafa9ba68a4586fb03b736dc1986b407123ba Mon Sep 17 00:00:00 2001 From: Kirill Bessonov Date: Tue, 4 Dec 2018 09:59:13 -0500 Subject: [PATCH 4/6] no arch commit for python 3.4 --- recipes/mob_suite/meta.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/recipes/mob_suite/meta.yaml b/recipes/mob_suite/meta.yaml index d825423446b1a..15b7ac08c1333 100644 --- a/recipes/mob_suite/meta.yaml +++ b/recipes/mob_suite/meta.yaml @@ -6,7 +6,7 @@ package: build: number: 1 - skip: True # [py27] + noarch: python script: python -m pip install --no-deps --ignore-installed . source: From 1b4a52d8ced28e646c2bea71a4a618beeda8b051 Mon Sep 17 00:00:00 2001 From: kbessonov1984 Date: Tue, 4 Dec 2018 16:07:32 -0500 Subject: [PATCH 5/6] no arch conda package version --- recipes/mob_suite/meta.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/recipes/mob_suite/meta.yaml b/recipes/mob_suite/meta.yaml index 15b7ac08c1333..7365f95d88300 100644 --- a/recipes/mob_suite/meta.yaml +++ b/recipes/mob_suite/meta.yaml @@ -5,7 +5,7 @@ package: version: {{ version }} build: - number: 1 + number: 2 noarch: python script: python -m pip install --no-deps --ignore-installed . From 6c61366bd9cd36557ad439caa4ded8e92ec4fcc2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Andreas=20Sj=C3=B6din?= Date: Wed, 5 Dec 2018 12:20:13 +0100 Subject: [PATCH 6/6] Set build number to 1 --- recipes/mob_suite/meta.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/recipes/mob_suite/meta.yaml b/recipes/mob_suite/meta.yaml index 7365f95d88300..15b7ac08c1333 100644 --- a/recipes/mob_suite/meta.yaml +++ b/recipes/mob_suite/meta.yaml @@ -5,7 +5,7 @@ package: version: {{ version }} build: - number: 2 + number: 1 noarch: python script: python -m pip install --no-deps --ignore-installed .