diff --git a/recipes/metagenome-atlas/meta.yaml b/recipes/metagenome-atlas/meta.yaml index c6f998087ba7f..9515b0e6f7a07 100644 --- a/recipes/metagenome-atlas/meta.yaml +++ b/recipes/metagenome-atlas/meta.yaml @@ -11,9 +11,10 @@ source: build: skip: True # [osx] - number: 0 + number: 1 entry_points: - - atlas=atlas.main:cli + - atlas=atlas.atlas:cli + requirements: build: @@ -39,14 +40,9 @@ test: imports: atlas # commands: - # - atlas --version - # - atlas init --help - # - atlas run --help -# extra: -# container: -# # click requires a unicode locale when used with Python 3 -# # extended-base generates en_US.UTF-8 locale and sets LC_ALL, LANG properly -# extended-base: true + # - LANG=en_US.utf8 atlas --version + # - LANG=en_US.utf8 atlas init --help + # - LANG=en_US.utf8 atlas run --help about: home: https://github.com/metagenome-atlas @@ -54,6 +50,27 @@ about: license_family: BSD summary: | ATLAS - Three commands to start analysing your metagenome data + + description: | + Atlas is a easy to use metagenomic pipeline + ![scheme of workflow](https://github.com/metagenome-atlas/atlas/blob/f8627545bcfb8f2b55733a35ecd0426ae4bbd5d1/resources/images/ATLAS_scheme.png) + + # Quick Start + + Three commands to start analysing your metagenome data: + ``` + conda install -c bioconda -c conda-forge metagenome-atlas + atlas init --db-dir databases path/to/fastq/files + atlas run + ``` + All databases and dependencies are installed on the fly in the directory `db-dir`. + You want to run these three commands on the example_data on the GitHub repo. + If you have more time, then we recommend you configure atlas according to your needs. + - check the `samples.tsv` + - edit the `config.yaml` + - run atlas on any cluster system + For more details see documentation. + dev_url: https://github.com/metagenome-atlas/atlas doc_url: https://metagenome-atlas.rtfd.io extra: