From 6bd984cd9b2c8c067fa8c5abf23812466f5cd7be Mon Sep 17 00:00:00 2001
From: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
Date: Wed, 16 Oct 2024 15:18:41 +0000
Subject: [PATCH 1/6] Update pggb to 0.7.0

---
 recipes/pggb/meta.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/recipes/pggb/meta.yaml b/recipes/pggb/meta.yaml
index 5b0a82197d30a..b246fd5a8758a 100644
--- a/recipes/pggb/meta.yaml
+++ b/recipes/pggb/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pggb" %}
-{% set version = "0.6.0" %}
+{% set version = "0.7.0" %}
 
 package:
   name: "{{ name }}"
@@ -7,13 +7,13 @@ package:
 
 source:
   url: https://github.com/pangenome/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: e201410e5b7ca7c598267797a7fa30b065a1b2b76ee5c309341a93fc489704f3
+  sha256: 1ea167eadd66db7665c8135a629aea046d79491f57227a4a332a376b92caf911
 
 build:
   noarch: generic
   run_exports:
   - {{ pin_subpackage(name, max_pin='x.x') }}
-  number: 1
+  number: 0
 
 requirements:
   run:

From 7aacf2548fc848f0c11367bcae17f793d648e466 Mon Sep 17 00:00:00 2001
From: AndreaGuarracino <andreaguarracino@outlook.com>
Date: Wed, 16 Oct 2024 10:27:21 -0500
Subject: [PATCH 2/6] update pggb components, and add vcfbub and vcflib

---
 recipes/pggb/meta.yaml | 18 ++++++++++--------
 1 file changed, 10 insertions(+), 8 deletions(-)

diff --git a/recipes/pggb/meta.yaml b/recipes/pggb/meta.yaml
index b246fd5a8758a..c89555abd0dbf 100644
--- a/recipes/pggb/meta.yaml
+++ b/recipes/pggb/meta.yaml
@@ -17,20 +17,22 @@ build:
 
 requirements:
   run:
+    - wfmash ==0.14.0
+    - seqwish ==0.7.11
+    - smoothxg ==0.8.0
+    - odgi ==0.9.0
+    - gfaffix ==0.1.5b
+    - vg ==1.59.0
+    - vcfbub ==0.1.1
+    - vcflib ==1.0.10
+    - multiqc ==1.22
+    - python-igraph ==0.11.5
     - bc
     - tabix
-    - gfaffix ==0.1.5b
     - gsl 2.7.0 
-    - multiqc ==1.19
-    - odgi ==0.8.6
     - pigz
     - bcftools
-    - seqwish ==0.7.10
-    - smoothxg ==0.7.4
     - time
-    - vg 1.59.0
-    - wfmash ==0.13.0
-    - python-igraph ==0.10.4
 
 test:
   commands:

From 38350157e29b38c4514809e830c53ac0c62fcd49 Mon Sep 17 00:00:00 2001
From: AndreaGuarracino <andreaguarracino@outlook.com>
Date: Wed, 16 Oct 2024 10:52:10 -0500
Subject: [PATCH 3/6] skip osx

---
 recipes/pggb/meta.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/recipes/pggb/meta.yaml b/recipes/pggb/meta.yaml
index c89555abd0dbf..f688978e0d743 100644
--- a/recipes/pggb/meta.yaml
+++ b/recipes/pggb/meta.yaml
@@ -10,6 +10,7 @@ source:
   sha256: 1ea167eadd66db7665c8135a629aea046d79491f57227a4a332a376b92caf911
 
 build:
+  skip: True # [osx]
   noarch: generic
   run_exports:
   - {{ pin_subpackage(name, max_pin='x.x') }}

From 52ddad51948c36de0e2a13f648b8a4e2f6ecfade Mon Sep 17 00:00:00 2001
From: AndreaGuarracino <andreaguarracino@outlook.com>
Date: Wed, 16 Oct 2024 11:01:41 -0500
Subject: [PATCH 4/6] remove noarch

---
 recipes/pggb/meta.yaml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/recipes/pggb/meta.yaml b/recipes/pggb/meta.yaml
index f688978e0d743..18eeb633e06dd 100644
--- a/recipes/pggb/meta.yaml
+++ b/recipes/pggb/meta.yaml
@@ -11,7 +11,6 @@ source:
 
 build:
   skip: True # [osx]
-  noarch: generic
   run_exports:
   - {{ pin_subpackage(name, max_pin='x.x') }}
   number: 0

From 313c4b694aeb6d05c48f7e91bc74b4a0d3a2e6cc Mon Sep 17 00:00:00 2001
From: AndreaGuarracino <andreaguarracino@outlook.com>
Date: Wed, 16 Oct 2024 11:14:29 -0500
Subject: [PATCH 5/6] noarch after skip true

---
 recipes/pggb/meta.yaml | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/recipes/pggb/meta.yaml b/recipes/pggb/meta.yaml
index 18eeb633e06dd..bad23cf82ff8e 100644
--- a/recipes/pggb/meta.yaml
+++ b/recipes/pggb/meta.yaml
@@ -10,10 +10,11 @@ source:
   sha256: 1ea167eadd66db7665c8135a629aea046d79491f57227a4a332a376b92caf911
 
 build:
-  skip: True # [osx]
+  number: 0
+  skip: true # [osx]
+  noarch: generic
   run_exports:
   - {{ pin_subpackage(name, max_pin='x.x') }}
-  number: 0
 
 requirements:
   run:
@@ -42,7 +43,7 @@ about:
   home: https://github.com/pangenome/pggb
   license: MIT
   license_file: LICENSE
-  summary: This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model).
+  summary: PanGenome Graph Building pipeline renders
 
 extra:
   recipe-maintainers:

From dd278ad2e0250171eb47b6c9312f674585026687 Mon Sep 17 00:00:00 2001
From: AndreaGuarracino <andreaguarracino@outlook.com>
Date: Wed, 16 Oct 2024 11:58:29 -0500
Subject: [PATCH 6/6] add skip-lints

---
 recipes/pggb/meta.yaml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/recipes/pggb/meta.yaml b/recipes/pggb/meta.yaml
index bad23cf82ff8e..bc530cbe7eb6e 100644
--- a/recipes/pggb/meta.yaml
+++ b/recipes/pggb/meta.yaml
@@ -12,7 +12,6 @@ source:
 build:
   number: 0
   skip: true # [osx]
-  noarch: generic
   run_exports:
   - {{ pin_subpackage(name, max_pin='x.x') }}
 
@@ -48,3 +47,5 @@ about:
 extra:
   recipe-maintainers:
     - AndreaGuarracino
+  skip-lints:
+    - should_be_noarch_generic