From 05a1faca84faadfe9b0beed4b274a39d61515778 Mon Sep 17 00:00:00 2001
From: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
Date: Wed, 23 Oct 2024 13:17:11 +0000
Subject: [PATCH 1/3] Update gempipe to 1.37.0

---
 recipes/gempipe/meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/recipes/gempipe/meta.yaml b/recipes/gempipe/meta.yaml
index af1cdf9c4c906..f7971a8a06788 100755
--- a/recipes/gempipe/meta.yaml
+++ b/recipes/gempipe/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.36.0" %}
+{% set version = "1.37.0" %}
 
 package:
     name: "gempipe"
@@ -7,7 +7,7 @@ package:
 
 source:
     url: https://github.com/lazzarigioele/gempipe/archive/v{{ version }}.tar.gz
-    sha256: e7585c905346be95d9018083928d00a5a44e8f6a4c3f8049e5de873bafdf8926
+    sha256: 469d6d1516f268c16f29ddabf8bf3b6d887fe986bdbfd0a2989c7c626cf2a878
 
 
 build:

From 2a3882e324ee67194cc63ef1749203ed2b2dc255 Mon Sep 17 00:00:00 2001
From: mencian <joshua.zhuang@yahoo.com>
Date: Wed, 23 Oct 2024 11:34:26 -0500
Subject: [PATCH 2/3] Update dependencies

---
 recipes/gempipe/meta.yaml | 24 +++++++++---------------
 1 file changed, 9 insertions(+), 15 deletions(-)

diff --git a/recipes/gempipe/meta.yaml b/recipes/gempipe/meta.yaml
index f7971a8a06788..3c4b9ad60cb1d 100755
--- a/recipes/gempipe/meta.yaml
+++ b/recipes/gempipe/meta.yaml
@@ -4,17 +4,15 @@ package:
     name: "gempipe"
     version: {{ version }}
 
-
 source:
-    url: https://github.com/lazzarigioele/gempipe/archive/v{{ version }}.tar.gz
-    sha256: 469d6d1516f268c16f29ddabf8bf3b6d887fe986bdbfd0a2989c7c626cf2a878
-
+    url: https://pypi.org/packages/source/{{ name[0] }}/{{ name }}/gempipe-{{ version }}.tar.gz
+    sha256: 76b9f005394ee36b7e886fc6417ead37a378563a65c80f653b1c31ea816bbd4a
 
 build:
     number: 0  
     noarch: python
     script: 
-        - {{ PYTHON }} -m pip install . -vv --no-deps  
+        - {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir
     entry_points:
         - gempipe = gempipe:main
     run_exports:
@@ -25,9 +23,7 @@ requirements:
     host:
         - python >=3.9
         - pip
-        - poetry >=1.7.1
-        - poetry-core >=1.8.1
-        - ipython >=8.7.0
+        - poetry-core >=1.0.0
     run:
         - python >=3.9
         - ipython >=8.7.0
@@ -46,9 +42,9 @@ requirements:
         - diamond >=2.0.15
         - eggnog-mapper >=2.1.7
         - matplotlib-base >=3.7.0
-        - seaborn >=0.13.0
-        
-
+        - seaborn-base >=0.13.0
+        - scipy >=1.10.0
+        - scikit-learn >=1.3.0
 
 test:
     imports:
@@ -59,17 +55,15 @@ test:
         - gempipe derive --help
         - gempipe autopilot --help
 
-
 about:
     home: "https://github.com/lazzarigioele/gempipe"
     summary: 'gempipe is a tool for the reconstruction of strain-specific genome-scale metabolic models.'
     license: GPL-3.0-only
+    license_family: GPL3
     license_file: LICENSE.txt
-    doc_url: "https://gempipe.readthedocs.io/"
+    doc_url: "https://gempipe.readthedocs.io"
     dev_url: "https://github.com/lazzarigioele/gempipe"
 
-
 extra:
     recipe-maintainers:
         - lazzarigioele
-        

From 5b87052ceb4771f2d06900bf5c83f24bf59a2da3 Mon Sep 17 00:00:00 2001
From: mencian <joshua.zhuang@yahoo.com>
Date: Wed, 23 Oct 2024 11:49:34 -0500
Subject: [PATCH 3/3] add name variable

---
 recipes/gempipe/meta.yaml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/recipes/gempipe/meta.yaml b/recipes/gempipe/meta.yaml
index 3c4b9ad60cb1d..986fcbbf46404 100755
--- a/recipes/gempipe/meta.yaml
+++ b/recipes/gempipe/meta.yaml
@@ -1,7 +1,8 @@
+{% set name = "gempipe" %}
 {% set version = "1.37.0" %}
 
 package:
-    name: "gempipe"
+    name: {{ name }}
     version: {{ version }}
 
 source: